Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6CBE	7452	2021-09-21	2018-02-02	2.78	2.88	—	3.9	0.010	0.81	0.0	0.05	9.59	0.01	2.147	9.53	0.00	1.9	98.1	0.0	-2.06	0.28	0.26	0.12	2.9	0.009	0.76	0.0	0.05	16.67	0.01	2.058	12.48	3.28	3.5	96.4	0.1	-0.86	3.92	0.69	0.88	4.53	248520	31080	60	0	0	0	0	logfile
✔	7oLE	12979	2021-09-04	2021-05-19	3.41	4.34	3.59	3.9	0.013	1.74	25.0	0.10	15.12	0.01	1.371	40.96	0.38	17.2	81.9	0.8	-5.68	0.55	0.26	-0.19	3.6	0.007	0.98	0.0	0.04	15.91	0.01	2.134	21.14	0.10	10.4	89.3	0.3	-1.83	1.99	0.76	0.75	0.82	26995	2899	14	0	1129	0	0	logfile
✔	7DZW	30915	2021-09-03	2021-01-26	3.45	4.19	3.55	3.3	0.019	2.27	0.0	0.00	4.81	0.01	2.240	1.99	0.00	5.1	93.3	1.6	-1.27	0.44	0.26	—	3.3	0.003	0.78	0.0	0.00	4.55	0.00	2.226	2.34	0.00	11.4	88.5	0.1	-1.82	2.18	0.76	0.74	—	13452	3363	3	0	0	0	0	logfile
✘	6CB8	7449	2021-09-07	2018-02-02	3.8	4.11	—	4.7	0.009	1.00	0.0	0.05	11.61	0.01	1.542	36.70	0.00	18.6	81.4	0.0	-5.72	0.54	0.27	0.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	100224	6210	27	0	27	0	50436	logfile
✔	7JMF	22392	2021-09-04	2020-07-31	4.5	5.06	—	4.7	0.005	0.99	0.0	0.05	10.23	0.01	1.373	8.03	0.36	11.2	88.6	0.2	-4.91	0.54	0.27	—	4.5	0.003	0.72	0.0	0.04	11.28	0.00	1.978	16.46	0.00	9.1	90.9	0.0	-1.47	1.58	0.72	0.49	—	120756	13500	12	0	3608	0	0	logfile
✔	7DZY	30921	2021-09-04	2021-01-26	3.6	3.83	3.38	3.1	0.020	2.12	0.0	0.00	4.32	0.01	1.980	2.73	0.00	3.7	95.4	0.9	-0.42	0.43	0.27	—	3.3	0.003	0.92	0.0	0.00	5.76	0.00	2.163	3.65	0.00	14.0	85.9	0.1	-3.26	2.39	0.70	0.73	—	18708	4677	9	0	0	0	0	logfile
✔	6S13	10079	2021-09-16	2019-06-18	3.58	3.67	—	5.8	0.023	1.27	2.0	0.06	22.26	0.01	1.596	18.72	21.29	20.5	79.4	0.1	-5.98	0.56	0.28	0.14	3.6	0.012	0.87	2.0	0.04	21.78	0.01	1.315	28.12	1.37	18.9	81.1	0.0	-4.60	2.82	0.68	0.59	0.75	233957	5608	52	4559	0	0	93218	logfile
✔	6C9K	7437	2021-09-06	2018-01-26	3.49	5.32	—	5.0	0.016	1.08	0.0	0.07	11.33	0.01	2.388	0.33	0.00	0.6	99.4	0.0	1.74	0.55	0.28	0.81	5.0	0.003	0.59	0.0	0.04	14.71	0.00	2.162	16.61	0.31	2.0	98.0	0.0	3.42	0.94	0.81	0.67	-0.16	37632	4923	24	0	0	0	0	logfile
✔	3KTT	5148	2021-09-02	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	176.10	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	2.1	0.007	1.18	0.0	0.05	17.26	0.01	2.046	27.09	0.49	10.8	88.3	1.0	-2.28	1.90	0.31	0.43	—	3855	513	1	0	0	0	0	logfile
✔	5G2Y	3332	2021-09-03	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	11.90	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.7	0.007	1.01	0.0	0.05	23.93	0.01	1.976	72.56	0.00	0.0	0.0	0.0	—	3.28	0.90	0.79	—	13494	0	1	630	0	0	0	logfile
✔	5N6W	3595	2021-09-06	2017-02-16	4.2	4.31	—	4.2	0.001	0.36	0.0	0.04	4.92	0.00	2.309	3.73	0.00	17.7	79.7	2.6	-5.61	0.44	0.28	—	4.2	0.028	2.04	4.0	0.05	11.63	0.01	1.888	29.56	0.17	13.8	85.3	0.8	-4.48	1.56	0.69	0.66	—	40752	2512	16	0	0	0	20032	logfile
✔	7EGA	31110	2021-09-06	2021-03-24	4.1	4.55	—	4.1	0.008	1.08	35.0	0.07	16.87	0.01	1.445	18.41	3.89	6.5	93.1	0.4	-3.75	0.60	0.28	—	3.9	0.003	0.69	0.0	0.04	15.50	0.00	1.995	14.62	0.00	4.9	95.0	0.1	-0.35	1.47	0.74	0.56	—	85697	10273	49	170	11	0	0	logfile
✔	6Q2J	20572	2021-09-03	2019-08-08	4.1	4.32	—	4.1	0.006	0.98	0.0	0.06	8.65	0.01	1.677	4.24	0.13	5.0	94.8	0.1	-3.22	0.52	0.28	—	4.2	0.005	0.85	0.0	0.05	11.87	0.00	2.185	10.40	0.00	5.0	95.0	0.0	-1.08	2.29	0.70	0.62	—	13796	1738	8	0	22	0	0	logfile
✔	7ENA	31204	2021-09-04	2021-04-16	4.07	3.90	—	3.5	0.011	1.59	361.0	0.11	17.28	0.01	1.497	21.87	10.72	7.9	90.7	1.4	-2.34	0.57	0.29	—	3.3	0.004	0.73	0.0	0.04	14.25	0.00	1.757	14.95	0.02	7.1	92.6	0.3	-0.39	2.08	0.64	0.47	—	173965	21595	88	138	18	0	0	logfile
✔	6JCR	9795	2021-09-19	2019-01-30	3.07	3.19	—	3.6	0.009	1.12	0.0	0.06	10.94	0.01	0.548	52.93	0.44	6.4	93.6	0.0	-3.60	0.44	0.29	-0.03	3.1	0.004	0.67	0.0	0.04	15.47	0.00	2.097	12.54	0.36	5.2	94.8	0.0	-1.58	1.10	0.82	0.88	4.02	246720	31080	60	0	0	0	0	logfile
✔	6XRE	22294	2021-09-04	2020-07-12	4.6	7.52	—	4.5	0.011	1.16	1.0	0.07	10.73	0.01	0.771	4.76	0.24	7.9	91.5	0.6	-3.72	0.62	0.29	—	4.5	0.004	0.74	0.0	0.04	12.43	0.00	1.796	21.61	0.00	14.6	85.4	0.0	-3.29	1.13	0.84	0.63	—	68542	4289	18	0	9	0	34248	logfile
✔	6RUo	10007	2021-09-06	2019-05-28	3.5	3.56	—	4.0	0.007	1.05	0.0	0.06	13.11	0.01	2.170	7.92	0.40	10.5	89.4	0.1	-4.99	0.53	0.29	0.05	3.5	0.015	1.35	6.0	0.05	17.70	0.01	1.802	22.61	0.46	9.8	90.1	0.1	-2.94	2.47	0.69	0.62	0.89	50792	6086	26	93	8	0	0	logfile
✔	5US7	8604	2021-09-17	2017-02-13	2.8	3.07	—	3.9	0.010	1.15	0.0	0.07	10.63	0.01	1.998	25.45	0.00	15.6	82.1	2.4	-3.94	0.36	0.29	-0.07	3.0	0.008	1.13	0.0	0.05	16.93	0.01	1.758	21.09	2.67	15.0	83.0	1.9	-2.60	1.63	0.71	0.84	3.68	242340	30360	60	0	0	0	0	logfile
✔	5FN1	3236	2021-09-03	2015-11-10	3.9	4.00	—	4.7	0.009	1.18	0.0	0.07	11.47	0.00	0.877	52.86	0.00	8.8	88.4	2.8	-3.37	0.24	0.29	0.57	3.9	0.004	0.80	0.0	0.04	17.28	0.01	1.886	18.71	1.12	11.8	87.2	1.0	-0.89	1.76	0.42	0.77	1.57	61308	3906	36	90	0	0	30078	logfile
✔	5Li4	4052	2021-09-04	2016-07-14	4.2	5.13	—	4.0	0.053	3.07	114.0	0.34	14.44	0.02	0.111	92.06	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.4	0.004	1.01	0.0	0.05	13.55	0.01	2.127	27.58	0.00	16.6	82.5	0.9	-3.40	4.65	0.35	0.60	—	20070	2562	6	0	0	0	0	logfile

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