Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6FVW	4322	2021-12-01	2018-03-05	4.5	4.60	—	4.6	0.035	3.52	888.0	0.20	17.57	0.03	0.436	3.51	2.98	5.7	92.3	2.0	-2.29	0.50	0.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	110594	14032	59	0	12	20	0	logfile
✔	7ARK	11885	2021-12-01	2020-10-25	4.1	4.15	—	4.1	0.003	0.77	0.0	0.05	13.71	0.00	2.191	3.82	0.10	5.5	94.5	0.0	-5.58	0.59	0.54	—	4.1	0.003	0.72	0.0	0.04	13.54	0.00	1.991	12.07	0.00	5.2	94.8	0.0	-2.74	1.34	0.63	0.63	—	9570	1243	6	0	4	0	0	logfile
✔	5FN4	3239	2021-12-01	2015-11-10	4.0	4.24	—	4.2	0.010	1.71	17.0	0.10	18.07	0.01	2.131	10.17	10.51	12.0	84.8	3.2	-1.44	0.61	0.55	—	4.1	0.004	0.96	0.0	0.05	17.15	0.01	2.115	22.07	0.48	8.5	90.8	0.7	-0.61	1.72	0.69	0.79	—	9776	1250	5	0	0	0	0	logfile
✔	6PZC	20534	2021-12-01	2019-07-31	4.34	4.63	—	4.4	0.008	1.12	0.0	0.06	11.22	0.01	2.137	7.44	0.42	9.7	90.3	0.0	-5.15	0.60	0.55	—	4.4	0.003	0.72	0.0	0.04	11.18	0.00	2.097	11.35	0.00	6.8	93.2	0.0	0.04	1.67	0.70	0.78	—	7456	1173	1	0	0	0	0	logfile
✔	6ZPG	11338	2021-12-01	2020-07-08	4.6	4.29	—	7.0	0.004	0.99	0.0	0.05	15.64	0.01	2.313	5.51	0.25	5.6	94.4	0.0	-3.85	0.60	0.55	—	6.9	0.003	0.85	0.0	0.05	15.43	0.00	2.151	21.12	0.00	7.4	92.6	0.0	-0.02	2.62	0.63	0.60	—	3808	463	1	0	0	0	0	logfile
✔	5FN2	3237	2021-12-02	2015-11-10	4.2	4.23	—	4.2	0.009	1.73	23.0	0.10	17.98	0.01	1.890	19.04	11.69	11.9	84.1	3.9	-1.77	0.48	0.55	—	4.2	0.004	0.93	0.0	0.05	14.29	0.01	2.041	23.70	0.00	9.0	90.1	0.8	-1.04	1.12	0.59	0.73	—	10276	1309	4	0	0	0	0	logfile
✔	6TNF	10531	2021-12-01	2019-12-07	3.8	2.90	3.67	2.7	0.034	1.65	0.0	0.27	15.46	0.01	2.236	8.40	0.00	17.8	81.5	0.7	-5.32	0.60	0.56	—	2.7	0.003	0.83	0.0	0.06	12.92	0.00	2.186	8.27	0.00	15.8	84.2	0.0	-2.26	0.51	0.65	0.63	—	9559	2206	5	0	66	0	0	logfile
✔	5YRN	6842	2021-12-01	2017-11-09	4.1	3.09	3.51	6.7	0.007	1.00	0.0	0.05	10.65	0.00	2.371	8.18	0.00	4.7	95.3	0.0	-3.39	0.53	0.56	—	3.8	0.004	0.87	0.0	0.04	14.72	0.00	2.104	21.86	0.00	3.4	96.6	0.0	-0.52	2.86	0.62	0.78	—	8280	1044	12	0	0	0	0	logfile
✔	6YBV	10774	2021-12-01	2020-03-17	3.8	3.86	4.60	3.6	0.008	1.47	0.0	0.07	17.69	0.01	2.202	9.58	6.67	6.1	93.4	0.5	-2.26	0.34	0.56	1.26	3.6	0.004	0.86	0.0	0.05	18.51	0.00	2.029	20.34	0.80	11.9	87.9	0.1	-2.61	3.36	0.34	0.60	0.38	6731	769	5	78	0	0	0	logfile
✔	6J5A	0670	2021-12-01	2019-01-10	4.35	4.41	—	4.3	0.008	1.25	0.0	0.05	15.23	0.01	1.776	15.50	1.18	8.9	90.5	0.6	-6.05	0.52	0.56	—	4.3	0.003	0.81	0.0	0.04	13.04	0.00	2.218	11.14	0.00	8.5	91.5	0.0	-1.38	1.80	0.57	0.67	—	8544	1064	18	0	218	0	0	logfile
✔	6EK5	3521	2021-12-01	2017-09-25	4.2	4.30	4.14	4.3	0.004	1.20	0.0	0.06	10.40	0.01	2.104	10.95	0.61	19.3	80.6	0.1	-5.33	0.65	0.57	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	165959	20300	110	0	0	0	0	logfile
✔	5TV4	8469	2021-12-01	2016-11-08	4.2	4.13	—	4.0	0.007	1.26	0.0	0.06	12.31	0.01	1.511	46.46	0.48	13.1	86.2	0.7	-5.82	0.48	0.57	—	4.0	0.004	0.78	0.0	0.04	10.40	0.00	2.164	10.33	0.00	5.7	94.3	0.0	0.13	0.85	0.54	0.66	—	6548	1140	4	0	17	0	0	logfile
✔	5X0M	6698	2021-12-02	2017-01-21	3.8	3.85	—	3.9	0.008	1.37	2.0	0.06	20.84	0.01	1.915	54.20	11.48	12.9	81.9	5.2	-5.95	0.39	0.57	0.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10654	1323	1	0	20	0	0	logfile
✔	6M5V	30094	2021-12-02	2020-03-11	4.5	4.75	—	4.6	0.007	0.86	1.0	0.05	16.07	0.00	2.209	18.28	5.50	9.0	90.9	0.2	-3.04	0.56	0.57	—	4.6	0.006	0.82	0.0	0.04	13.60	0.01	2.139	21.09	0.00	8.9	91.1	0.0	-0.58	2.38	0.63	0.74	—	10549	1359	5	0	5	0	0	logfile
✔	6VWH	21416	2021-12-01	2020-02-19	4.26	4.65	—	4.3	0.006	1.06	0.0	0.06	13.75	0.01	2.223	10.17	0.82	6.7	92.5	0.8	-1.73	0.69	0.57	—	4.4	0.003	0.69	0.0	0.04	12.76	0.00	1.895	13.60	0.00	10.5	89.3	0.2	-1.79	1.53	0.71	0.60	—	8461	539	2	0	0	0	4139	logfile
✔	6F07	4163	2021-12-02	2017-11-17	3.6	3.68	—	3.7	0.007	0.96	0.0	0.05	10.28	0.01	0.559	5.78	0.70	6.1	93.7	0.2	-3.04	0.47	0.57	1.27	3.6	0.012	0.85	0.0	0.04	15.61	0.01	2.110	10.83	0.61	4.9	95.1	0.0	0.86	1.53	0.56	0.70	0.61	10149	1227	4	0	2	0	0	logfile
✔	6P49	20247	2021-12-01	2019-05-26	3.3	3.60	3.10	3.6	0.007	1.50	0.0	0.08	16.18	0.01	2.164	18.16	3.28	6.9	92.4	0.7	-6.27	0.54	0.57	1.13	3.6	0.014	1.32	0.0	0.05	16.97	0.01	1.996	20.55	0.10	10.4	89.5	0.2	-4.38	1.70	0.55	0.59	1.05	9576	1166	4	0	2	0	0	logfile
✔	5V6P	8637	2021-12-01	2017-03-17	4.1	4.04	—	4.1	0.015	1.37	0.0	0.08	9.65	0.01	2.463	1.41	0.00	2.6	97.0	0.4	0.18	0.40	0.58	—	4.0	0.003	0.65	0.0	0.03	12.71	0.00	1.883	12.62	0.00	2.4	97.4	0.2	3.20	1.62	0.41	0.66	—	9194	540	2	0	0	0	4676	logfile
✔	5XLP	6731	2021-12-01	2017-05-11	4.2	4.23	—	4.2	0.009	1.36	0.0	0.06	14.75	0.01	2.194	12.48	0.57	18.2	81.4	0.5	-5.53	0.62	0.58	—	4.2	0.013	1.39	0.0	0.05	16.16	0.01	1.225	26.13	0.11	16.4	83.3	0.3	-4.10	2.32	0.65	0.63	—	9952	1343	6	24	0	0	0	logfile
✔	6MEo	9108	2021-12-01	2018-09-06	3.9	3.97	3.94	3.9	0.006	0.93	1.0	0.16	10.01	0.01	1.985	7.93	1.01	7.3	92.7	0.0	-4.26	0.54	0.58	1.37	3.9	0.004	0.93	0.0	0.07	15.92	0.00	2.062	14.45	0.63	6.2	93.7	0.1	-1.80	1.25	0.63	0.78	1.43	7465	887	5	0	32	0	0	logfile

• ← previous
• Page 4 of 85
• next →