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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6YRG | 10889 | 2023-04-26 | 2020-04-20 | 4.8 | 6.94 | — | 7.9 | 0.009 | 1.41 | 18.0 | 0.08 | 13.69 | 0.01 | 1.270 | 31.61 | 0.48 | 9.4 | 90.3 | 0.3 | -2.26 | 0.66 | 0.32 | — | 7.9 | 0.003 | 0.74 | 0.0 | 0.04 | 13.07 | 0.00 | 2.157 | 15.69 | 0.00 | 9.7 | 90.2 | 0.1 | -1.41 | 3.45 | 0.74 | 0.50 | — | 21992 | 2736 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 5UCY | 8539 | 2023-04-27 | 2016-12-22 | 4.6 | 4.99 | — | 4.6 | 0.011 | 1.21 | 3.0 | 0.06 | 13.21 | 0.01 | 0.244 | 89.25 | 0.68 | 11.3 | 88.3 | 0.5 | -4.47 | 0.50 | 0.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24990 | 2610 | 12 | 3 | 6 | 0 | 4452 | logfile |
✔ | 8DWi | 27755 | 2023-04-19 | 2022-08-01 | 3.4 | 4.06 | 3.58 | 4.1 | 0.003 | 0.63 | 0.0 | 0.04 | 13.02 | 0.01 | 2.258 | 7.44 | 0.00 | 5.0 | 95.0 | 0.0 | 0.29 | 0.28 | 0.33 | -0.40 | 4.0 | 0.003 | 0.74 | 0.0 | 0.04 | 16.17 | 0.01 | 2.113 | 11.24 | 0.64 | 5.0 | 95.0 | 0.0 | -0.32 | 1.76 | 0.49 | 0.73 | 1.52 | 3192 | 424 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ZPJ | 14855 | 2023-04-26 | 2022-04-27 | 3.81 | 3.24 | 3.86 | 6.5 | 0.004 | 0.86 | 0.0 | 0.05 | 13.19 | 0.01 | 2.159 | 2.94 | 0.67 | 3.3 | 96.7 | 0.0 | 0.22 | 0.54 | 0.33 | 0.15 | 2.1 | 0.004 | 0.69 | 0.0 | 0.04 | 15.40 | 0.01 | 1.881 | 14.65 | 0.75 | 4.9 | 95.1 | 0.0 | -0.12 | 1.51 | 0.64 | 0.57 | 0.39 | 23479 | 1355 | 3 | 55 | 0 | 0 | 11508 | logfile |
✔ | 7N9Y | 24264 | 2023-04-20 | 2021-06-18 | 4.8 | 4.30 | — | 2.2 | 0.019 | 1.07 | 0.0 | 0.00 | 6.04 | 0.00 | 2.538 | 0.59 | 0.00 | 8.5 | 91.1 | 0.3 | -1.98 | 0.49 | 0.33 | — | 2.2 | 0.003 | 1.01 | 0.0 | 0.00 | 4.81 | 0.00 | 2.550 | 7.73 | 0.00 | 18.2 | 81.3 | 0.5 | -4.24 | 2.61 | 0.52 | 0.31 | — | 7515 | 2505 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oFJ | 20047 | 2023-04-21 | 2019-03-30 | 4.5 | 5.60 | 3.27 | 7.8 | 0.007 | 0.96 | 0.0 | 0.05 | 15.74 | 0.01 | 2.135 | 3.69 | 0.00 | 7.1 | 92.9 | 0.0 | -4.36 | 0.48 | 0.33 | — | 7.8 | 0.002 | 0.58 | 0.0 | 0.04 | 14.03 | 0.00 | 2.002 | 10.00 | 0.00 | 8.7 | 91.3 | 0.0 | -1.93 | 1.22 | 0.56 | 0.54 | — | 10310 | 650 | 2 | 0 | 0 | 0 | 5142 | logfile |
✔ | 8E5P | 27917 | 2023-04-25 | 2022-08-22 | 4.4 | 9.89 | 6.01 | 8.2 | 0.003 | 0.64 | 0.0 | 0.04 | 11.32 | 0.00 | 1.299 | 26.66 | 1.63 | 1.3 | 98.4 | 0.3 | -0.83 | 0.61 | 0.33 | — | 8.2 | 0.003 | 0.69 | 0.0 | 0.04 | 11.81 | 0.00 | 1.266 | 18.73 | 0.00 | 2.8 | 97.2 | 0.0 | 0.85 | 1.53 | 0.85 | 0.77 | — | 20038 | 2502 | 13 | 8 | 18 | 0 | 0 | logfile |
✔ | 7UiF | 26544 | 2023-04-22 | 2022-03-29 | 4.6 | 5.63 | 4.34 | 6.7 | 0.004 | 0.69 | 0.0 | 0.05 | 13.63 | 0.01 | 0.850 | 9.76 | 0.06 | 1.9 | 98.0 | 0.1 | 0.62 | 0.48 | 0.33 | — | 6.7 | 0.003 | 0.75 | 0.0 | 0.05 | 13.27 | 0.00 | 2.026 | 20.55 | 0.00 | 3.5 | 96.5 | 0.0 | 0.05 | 1.21 | 0.61 | 0.62 | — | 63137 | 7857 | 33 | 0 | 0 | 0 | 0 | logfile |
✘ | 7JMG | 22393 | 2023-04-24 | 2020-07-31 | 4.5 | 7.15 | — | 4.3 | 0.005 | 0.93 | 0.0 | 0.05 | 9.82 | 0.01 | 1.373 | 7.38 | 0.27 | 10.3 | 89.6 | 0.1 | -4.77 | 0.57 | 0.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✔ | 7URi | 26713 | 2023-04-19 | 2022-04-22 | 2.6 | 2.67 | 2.95 | 2.6 | 0.009 | 1.37 | 0.0 | 0.12 | 25.77 | 0.01 | 2.201 | 7.31 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.05 | 0.34 | — | 2.6 | 0.008 | 1.44 | 0.0 | 0.07 | 23.84 | 0.01 | 2.072 | 23.68 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.06 | 0.08 | 0.38 | — | 1905 | 0 | 1 | 90 | 0 | 0 | 0 | logfile |
✔ | 7JMi | 22395 | 2023-04-24 | 2020-07-31 | 4.5 | 6.62 | — | 4.3 | 0.004 | 0.92 | 0.0 | 0.05 | 10.07 | 0.01 | 1.373 | 7.47 | 0.31 | 10.5 | 89.3 | 0.2 | -4.79 | 0.58 | 0.34 | — | 4.2 | 0.003 | 0.89 | 0.0 | 0.05 | 11.88 | 0.01 | 2.082 | 18.52 | 0.00 | 11.8 | 88.0 | 0.2 | -3.52 | 0.83 | 0.81 | 0.69 | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✔ | 7Uo0 | 26636 | 2023-04-21 | 2022-04-12 | 3.4 | 4.47 | — | 3.5 | 0.003 | 2.23 | 0.0 | 0.11 | 24.66 | 0.00 | 2.117 | 7.29 | 2.04 | 6.4 | 93.6 | 0.0 | -0.20 | 0.73 | 0.34 | 1.64 | 3.4 | 0.004 | 0.89 | 0.0 | 0.04 | 26.78 | 0.01 | 2.050 | 25.40 | 1.02 | 10.0 | 90.0 | 0.0 | -3.19 | 5.62 | 0.84 | 0.62 | 1.35 | 10697 | 112 | 4 | 455 | 7 | 0 | 0 | logfile |
✔ | 8CTG | 26989 | 2023-04-20 | 2022-05-14 | 3.8 | 3.16 | 3.72 | 3.3 | 0.004 | 0.98 | 0.0 | 0.05 | 7.62 | 0.01 | 2.113 | 12.33 | 6.90 | 9.7 | 88.5 | 1.8 | -3.04 | 0.57 | 0.35 | -0.17 | 2.3 | 0.004 | 0.91 | 0.0 | 0.04 | 7.56 | 0.00 | 2.231 | 7.59 | 1.15 | 15.0 | 84.8 | 0.2 | -3.09 | 2.07 | 0.60 | 0.45 | 1.92 | 5100 | 1006 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7NJ3 | 12371 | 2023-04-28 | 2021-02-15 | 4.48 | 4.72 | — | 4.6 | 0.004 | 0.70 | 1.0 | 0.05 | 13.64 | 0.00 | 1.907 | 8.92 | 0.38 | 4.2 | 95.8 | 0.0 | -0.73 | 0.57 | 0.36 | — | 4.6 | 0.006 | 0.81 | 0.0 | 0.04 | 13.81 | 0.01 | 1.754 | 25.13 | 0.00 | 8.4 | 91.6 | 0.0 | -2.08 | 2.79 | 0.72 | 0.62 | — | 28778 | 1795 | 6 | 23 | 0 | 0 | 13868 | logfile |
✔ | 7VQ2 | 32083 | 2023-04-26 | 2021-10-18 | 3.68 | 4.07 | — | 3.9 | 0.009 | 0.83 | 0.0 | 0.05 | 12.14 | 0.00 | 2.297 | 6.39 | 1.27 | 4.8 | 93.8 | 1.4 | -3.35 | 0.54 | 0.36 | 1.21 | 4.0 | 0.003 | 0.63 | 0.0 | 0.04 | 14.54 | 0.00 | 1.949 | 10.63 | 0.56 | 6.6 | 93.4 | 0.0 | 0.80 | 1.32 | 0.73 | 0.65 | 1.26 | 23340 | 1416 | 4 | 0 | 0 | 0 | 11764 | logfile |
✔ | 6PLQ | 20372 | 2023-04-23 | 2019-07-01 | 3.4 | 4.30 | — | 4.3 | 0.002 | 0.53 | 0.0 | 0.05 | 7.12 | 0.00 | 2.285 | 5.97 | 0.00 | 2.0 | 98.0 | 0.0 | -4.40 | 0.57 | 0.36 | 0.62 | 3.9 | 0.004 | 0.98 | 0.0 | 0.05 | 14.71 | 0.00 | 2.167 | 14.91 | 0.45 | 4.9 | 95.1 | 0.0 | -1.16 | 2.47 | 0.73 | 0.78 | 1.41 | 14240 | 1730 | 15 | 0 | 20 | 0 | 0 | logfile |
✔ | 4V91 | 2599 | 2023-04-25 | 2014-03-21 | 3.7 | 3.84 | — | 3.8 | 0.133 | 4.77 | 525.0 | 0.43 | 20.66 | 0.07 | 0.695 | 17.94 | 12.79 | 14.1 | 78.2 | 7.8 | -5.39 | 0.33 | 0.36 | 0.15 | 3.8 | 0.032 | 1.24 | 0.0 | 0.04 | 17.28 | 0.01 | 2.047 | 15.07 | 1.04 | 8.1 | 91.2 | 0.7 | -2.72 | 2.02 | 0.63 | 0.81 | 1.43 | 125665 | 6450 | 45 | 3482 | 0 | 0 | 0 | logfile |
✔ | 7FJo | 31625 | 2023-04-28 | 2021-08-04 | 3.34 | 3.72 | — | 3.5 | 0.012 | 1.56 | 4.0 | 0.09 | 12.69 | 0.02 | 1.277 | 9.35 | 3.26 | 7.2 | 92.4 | 0.4 | -1.06 | 0.55 | 0.36 | 0.19 | 3.5 | 0.008 | 0.85 | 0.0 | 0.05 | 14.79 | 0.00 | 2.080 | 12.88 | 0.42 | 5.7 | 94.2 | 0.0 | -0.56 | 3.15 | 0.77 | 0.79 | 1.92 | 28547 | 3640 | 12 | 0 | 25 | 0 | 0 | logfile |
✔ | 7XZX | 33533 | 2023-04-25 | 2022-06-03 | 4.53 | 5.42 | 4.49 | 4.5 | 0.006 | 0.99 | 0.0 | 0.06 | 25.64 | 0.00 | 1.688 | 10.77 | 0.15 | 1.7 | 98.3 | 0.0 | 0.69 | 0.69 | 0.37 | — | 4.4 | 0.004 | 0.65 | 0.0 | 0.04 | 25.63 | 0.00 | 2.095 | 14.00 | 0.00 | 2.6 | 97.4 | 0.0 | 1.09 | 1.71 | 0.90 | 0.82 | — | 19270 | 1554 | 14 | 342 | 0 | 0 | 0 | logfile |
✔ | 8E5L | 27914 | 2023-04-25 | 2022-08-22 | 4.2 | 8.91 | 5.82 | 7.6 | 0.003 | 0.64 | 0.0 | 0.04 | 11.68 | 0.00 | 1.299 | 26.62 | 1.63 | 1.3 | 98.4 | 0.3 | -0.83 | 0.63 | 0.37 | — | 7.5 | 0.002 | 0.65 | 0.0 | 0.04 | 12.02 | 0.00 | 1.046 | 16.48 | 0.00 | 2.4 | 97.6 | 0.0 | 0.49 | 1.33 | 0.89 | 0.83 | — | 20058 | 2502 | 13 | 9 | 18 | 0 | 0 | logfile |