Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7JSH	22454	2022-07-03	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.004	1.19	0.0	0.04	13.17	0.00	1.948	19.40	0.00	27.4	72.5	0.2	-5.14	6.11	0.74	0.62	—	7916	1904	8	15	0	0	0	logfile
✔	7oLE	12979	2022-07-05	2021-05-19	3.41	4.34	3.59	3.9	0.013	1.74	25.0	0.10	15.12	0.01	1.371	42.23	0.38	17.2	81.9	0.8	-5.68	0.55	0.26	-0.19	3.6	0.010	1.10	1.0	0.04	16.15	0.00	1.615	22.77	0.10	10.2	89.6	0.2	-2.21	1.45	0.77	0.74	0.57	26995	2899	14	0	1129	0	0	logfile
✘	7JMF	22392	2022-07-04	2020-07-31	4.5	5.06	—	4.7	0.005	0.98	0.0	0.05	10.23	0.01	1.373	8.17	0.36	11.2	88.6	0.2	-4.91	0.54	0.27	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	120756	13500	12	0	3608	0	0	logfile
✔	5N6W	3595	2022-07-07	2017-02-16	4.2	4.31	—	4.2	0.001	0.36	0.0	0.04	4.92	0.00	2.309	3.73	0.00	17.7	79.7	2.6	-5.61	0.44	0.27	—	4.2	0.021	1.61	1.0	0.04	10.59	0.01	1.586	23.57	0.04	11.8	87.5	0.6	-4.11	1.47	0.68	0.64	—	40752	2512	16	0	0	0	20032	logfile
✔	7DZY	30921	2022-07-04	2021-01-26	3.6	3.83	3.38	3.1	0.020	2.12	0.0	0.00	4.32	0.01	1.980	3.14	0.00	3.7	95.4	0.9	-0.42	0.43	0.27	—	3.3	0.003	0.85	0.0	0.00	5.31	0.00	2.074	2.81	0.00	11.3	88.5	0.2	-2.84	2.17	0.71	0.71	—	18708	4677	9	0	0	0	0	logfile
✔	6CB8	7449	2022-07-06	2018-02-02	3.8	4.11	—	4.7	0.006	0.84	0.0	0.05	11.53	0.01	1.542	37.70	0.00	18.6	81.4	0.0	-5.72	0.54	0.27	0.20	4.0	0.011	0.99	1.0	0.04	15.21	0.01	1.760	22.20	0.27	11.3	88.7	0.0	-3.56	1.96	0.64	0.51	0.20	100224	6210	27	0	27	0	50436	logfile
✔	5G2Y	3332	2022-07-03	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	11.90	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.7	0.007	1.01	0.0	0.05	23.66	0.01	1.957	72.02	0.00	0.0	0.0	0.0	—	3.26	0.89	0.78	—	13494	0	1	630	0	0	0	logfile
✔	6C9K	7437	2022-07-07	2018-01-26	3.49	5.32	—	5.0	0.016	1.08	0.0	0.07	11.33	0.01	2.388	1.65	0.00	0.6	99.4	0.0	1.74	0.55	0.28	0.81	5.0	0.004	0.62	0.0	0.04	14.84	0.00	2.148	18.74	0.15	2.1	97.9	0.0	3.14	0.89	0.81	0.67	-0.17	37632	4923	24	0	0	0	0	logfile
✔	3KTT	5148	2022-07-03	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	180.45	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	1.9	0.006	1.32	0.0	0.06	17.22	0.01	2.001	37.19	1.22	10.2	88.6	1.2	-2.54	1.70	0.31	0.43	—	3855	513	1	0	0	0	0	logfile
✔	7EGA	31110	2022-07-05	2021-03-24	4.1	4.55	—	4.1	0.008	1.08	35.0	0.07	16.87	0.01	1.445	18.80	3.89	6.5	93.1	0.4	-3.75	0.60	0.28	—	3.9	0.005	0.77	0.0	0.04	15.63	0.00	1.863	18.42	0.00	6.3	93.6	0.1	-0.76	1.41	0.75	0.56	—	85697	10273	49	170	11	0	0	logfile
✔	6Q2J	20572	2022-07-04	2019-08-08	4.1	4.32	—	4.1	0.006	0.96	0.0	0.06	8.65	0.01	1.677	4.31	0.13	5.0	94.8	0.1	-3.22	0.52	0.28	—	4.2	0.006	0.89	0.0	0.05	11.94	0.00	2.155	11.65	0.07	5.5	94.5	0.0	-1.61	2.28	0.67	0.58	—	13796	1738	8	0	22	0	0	logfile
✘	6RUo	10007	2022-07-08	2019-05-28	3.5	3.56	—	4.0	0.007	1.05	0.0	0.06	13.11	0.01	2.170	8.01	0.40	10.5	89.4	0.1	-4.99	0.53	0.29	0.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	50792	6086	26	93	8	0	0	logfile
✔	6XRE	22294	2022-07-04	2020-07-12	4.6	7.52	—	4.5	0.011	1.16	1.0	0.07	10.73	0.01	0.771	5.43	0.24	7.9	91.5	0.6	-3.72	0.62	0.29	—	4.5	0.004	0.74	0.0	0.04	11.94	0.00	1.838	18.75	0.00	13.9	86.0	0.0	-2.98	0.91	0.85	0.65	—	68542	4289	18	0	9	0	34248	logfile
✔	5FN1	3236	2022-07-03	2015-11-10	3.9	4.00	—	4.7	0.009	1.18	0.0	0.07	11.47	0.00	0.877	53.81	0.00	8.8	88.4	2.8	-3.37	0.24	0.29	0.57	3.9	0.006	0.89	0.0	0.04	16.82	0.01	1.902	20.80	0.89	12.6	86.4	1.1	-1.11	2.11	0.41	0.74	1.07	61308	3906	36	90	0	0	30078	logfile
✔	7NKC	12437	2022-07-06	2021-02-17	4.46	4.76	—	4.6	0.004	0.72	0.0	0.04	13.69	0.01	1.795	9.79	0.25	4.3	95.7	0.1	-0.76	0.51	0.30	—	4.7	0.011	0.97	1.0	0.04	14.20	0.01	1.829	18.97	0.00	5.7	94.3	0.0	-0.82	2.33	0.63	0.50	—	28788	1795	6	23	0	0	13868	logfile
✔	5Li4	4052	2022-07-04	2016-07-14	4.2	5.13	—	4.0	0.053	3.06	114.0	0.34	14.44	0.02	0.111	93.15	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.4	0.004	1.02	0.0	0.05	13.71	0.01	2.118	26.70	0.00	14.0	85.0	1.0	-3.83	4.19	0.34	0.57	—	20070	2562	6	0	0	0	0	logfile
✔	7EG9	31109	2022-07-05	2021-03-24	3.7	4.62	—	3.7	0.008	1.15	54.0	0.08	16.39	0.01	1.514	21.15	4.37	6.7	92.6	0.7	-3.68	0.58	0.30	0.60	3.6	0.003	0.70	0.0	0.04	16.83	0.00	2.021	12.24	0.13	4.7	95.2	0.1	-0.37	1.36	0.78	0.64	0.61	84318	10176	49	142	11	0	0	logfile
✔	5G2X	3331	2022-07-04	2016-04-16	3.8	3.49	—	3.4	0.001	0.31	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.004	0.76	0.0	0.04	17.15	0.01	1.994	28.48	0.45	18.5	80.5	1.1	-4.42	1.71	0.79	0.64	0.68	19072	487	3	704	0	0	0	logfile
✔	7Ao8	11837	2022-07-03	2020-10-14	4.5	5.23	4.51	3.6	0.011	1.51	8.0	0.26	16.21	0.01	1.219	8.99	4.18	6.9	92.5	0.6	-3.46	0.62	0.31	—	3.6	0.007	0.99	0.0	0.05	14.47	0.01	1.784	42.62	0.00	8.3	91.7	0.0	-2.14	2.68	0.85	0.75	—	10905	1350	9	0	8	0	0	logfile
✔	7Q1Z	13776	2022-07-05	2021-10-22	3.4	2.41	—	4.0	0.003	0.55	0.0	0.04	12.53	0.00	2.074	6.33	0.04	2.2	97.8	0.0	0.60	0.48	0.31	-0.02	2.2	0.005	0.79	0.0	0.05	16.02	0.01	2.100	11.70	0.74	3.3	96.7	0.0	-0.15	1.59	0.75	0.75	1.53	23694	2916	21	0	63	0	0	logfile

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