Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Ao8	11837	2022-07-03	2020-10-14	4.5	5.23	4.51	3.6	0.011	1.51	8.0	0.26	16.21	0.01	1.219	8.99	4.18	6.9	92.5	0.6	-3.46	0.62	0.31	—	3.6	0.007	0.99	0.0	0.05	14.47	0.01	1.784	42.62	0.00	8.3	91.7	0.0	-2.14	2.68	0.85	0.75	—	10905	1350	9	0	8	0	0	logfile
✔	7Q1Z	13776	2022-07-05	2021-10-22	3.4	2.41	—	4.0	0.003	0.55	0.0	0.04	12.53	0.00	2.074	6.33	0.04	2.2	97.8	0.0	0.60	0.48	0.31	-0.02	2.2	0.005	0.79	0.0	0.05	16.02	0.01	2.100	11.70	0.74	3.3	96.7	0.0	-0.15	1.59	0.75	0.75	1.53	23694	2916	21	0	63	0	0	logfile
✘	5A7U	3079	2022-07-02	2015-07-10	4.8	3.82	—	4.6	0.020	3.41	3.0	0.25	21.78	0.08	2.651	30.77	25.00	24.0	72.0	4.0	-6.05	-0.01	0.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	455	27	1	0	1	0	231	logfile
✘	7JMJ	22396	2022-07-04	2020-07-31	4.5	5.51	—	4.3	0.007	1.08	0.0	0.05	10.58	0.01	1.373	10.02	0.62	11.3	88.5	0.3	-4.67	0.56	0.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	120756	13500	12	0	3608	0	0	logfile
✔	6RWE	10038	2022-07-02	2019-06-04	3.0	3.12	—	3.7	0.009	1.02	1.0	0.06	13.12	0.01	1.975	6.79	0.73	7.4	92.5	0.1	-4.84	0.44	0.32	0.00	3.1	0.008	1.01	2.0	0.05	18.21	0.01	2.002	17.29	2.52	6.2	93.8	0.0	-1.73	1.38	0.71	0.73	1.38	53719	6454	26	95	8	0	0	logfile
✔	6i1X	0326	2022-07-03	2018-10-30	3.7	3.83	—	3.8	0.013	1.81	34.0	0.10	14.94	0.01	0.458	50.06	4.35	7.5	90.6	1.9	-3.51	0.50	0.32	0.28	3.8	0.005	0.87	0.0	0.05	16.53	0.01	2.131	19.55	0.28	5.8	93.8	0.4	-1.45	1.02	0.65	0.61	0.75	54915	7290	15	0	0	0	0	logfile
✔	6HD5	0201	2022-07-03	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.52	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.003	0.73	0.0	0.04	11.96	0.00	2.138	15.29	0.00	5.4	94.5	0.1	-0.09	2.01	0.45	0.55	—	9707	1234	3	0	0	0	0	logfile
✔	6YW7	10960	2022-07-03	2020-04-29	4.5	5.21	—	4.7	0.021	3.50	0.0	0.09	6.70	0.01	2.034	2.17	0.00	4.5	94.7	0.9	-1.45	0.57	0.32	—	4.6	0.003	1.00	0.0	0.02	5.16	0.00	2.215	9.65	0.00	10.5	89.4	0.2	-3.99	6.44	0.82	0.75	—	5426	1788	9	0	2	0	0	logfile
✔	6YRG	10889	2022-07-05	2020-04-20	4.8	6.94	—	7.9	0.009	1.41	18.0	0.08	13.69	0.01	1.270	31.66	0.48	9.4	90.3	0.3	-2.26	0.66	0.32	—	7.8	0.003	0.75	0.0	0.04	12.97	0.00	2.136	16.35	0.00	9.3	90.6	0.1	-1.50	3.42	0.75	0.52	—	21992	2736	4	0	0	0	0	logfile
✘	5UCY	8539	2022-07-05	2016-12-22	4.6	4.99	—	4.6	0.011	1.21	3.0	0.06	13.21	0.01	0.244	89.25	0.68	11.3	88.3	0.5	-4.47	0.50	0.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24990	2610	12	3	6	0	4452	logfile
✔	7FDB	31539	2022-07-03	2021-07-16	4.8	5.04	4.73	8.8	0.003	0.57	0.0	0.04	13.84	0.00	1.761	12.65	0.00	7.3	92.6	0.0	-0.78	0.66	0.32	—	4.7	0.005	0.87	0.0	0.05	13.83	0.01	1.970	28.88	0.03	7.4	92.6	0.0	-1.66	2.21	0.77	0.67	—	64497	8295	31	0	0	0	0	logfile
✔	7WoT	32658	2022-07-06	2022-01-22	3.73	4.26	—	3.8	0.010	1.69	284.0	0.10	15.82	0.01	1.016	24.11	4.41	9.4	88.4	2.2	-3.07	0.49	0.33	0.06	3.9	0.009	1.00	2.0	0.05	16.48	0.01	1.624	22.10	0.13	9.9	89.8	0.3	-1.23	1.08	0.56	0.44	0.23	133827	17285	24	0	0	0	0	logfile
✘	7N9Y	24264	2022-07-03	2021-06-18	4.8	4.30	—	2.2	0.019	1.07	0.0	0.00	6.04	0.00	2.538	0.68	0.00	8.5	91.1	0.3	-1.98	0.49	0.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7515	2505	2	0	0	0	0	logfile
✔	6oFJ	20047	2022-07-03	2019-03-30	4.5	5.60	3.27	7.8	0.007	0.96	0.0	0.05	15.74	0.01	2.135	3.88	0.00	7.1	92.9	0.0	-4.36	0.48	0.33	—	7.8	0.002	0.57	0.0	0.04	14.05	0.00	1.989	9.61	0.00	8.0	92.0	0.0	-2.00	1.40	0.55	0.54	—	10310	650	2	0	0	0	5142	logfile
✘	7JMi	22395	2022-07-04	2020-07-31	4.5	6.62	—	4.3	0.004	0.92	0.0	0.05	10.07	0.01	1.373	7.58	0.31	10.5	89.3	0.2	-4.79	0.58	0.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	120756	13500	12	0	3608	0	0	logfile
✘	7JMG	22393	2022-07-04	2020-07-31	4.5	7.15	—	4.3	0.005	0.93	0.0	0.05	9.82	0.01	1.373	7.47	0.27	10.3	89.6	0.1	-4.77	0.57	0.34	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	120756	13500	12	0	3608	0	0	logfile
✔	5YFP	6827	2022-07-06	2017-09-21	4.4	8.20	—	6.7	0.006	1.33	0.0	0.06	12.26	0.01	2.215	16.92	0.10	17.8	81.5	0.7	-6.11	0.83	0.34	—	5.5	0.004	1.12	0.0	0.04	10.78	0.00	2.024	26.41	0.10	17.3	82.4	0.3	-2.42	3.44	0.91	0.74	—	33096	5982	8	0	0	0	0	logfile
✔	7ML4	23908	2022-07-03	2021-04-27	3.1	4.68	—	2.8	0.006	0.74	0.0	0.04	13.76	0.00	1.382	21.85	0.53	9.0	90.8	0.2	-1.53	0.52	0.34	0.04	2.4	0.004	0.70	0.0	0.04	15.64	0.00	1.889	19.37	0.11	7.9	92.0	0.1	-0.68	1.80	0.80	0.77	1.56	62733	7907	42	91	138	0	0	logfile
✔	7TPP	26060	2022-07-04	2022-01-25	4.1	4.39	4.20	7.9	0.002	0.53	0.0	0.04	9.16	0.00	2.240	10.18	2.87	21.8	75.4	2.8	-5.30	0.70	0.35	—	7.8	0.004	0.84	0.0	0.05	12.03	0.00	2.001	29.05	0.00	14.1	85.6	0.3	-3.91	1.28	0.78	0.69	—	18513	2309	5	0	0	0	0	logfile
✔	7EDX	31075	2022-07-05	2021-03-17	4.5	4.87	—	4.1	0.008	1.09	34.0	0.07	16.63	0.01	1.497	21.08	3.31	6.1	93.4	0.5	-3.70	0.67	0.35	—	3.7	0.005	0.79	0.0	0.04	15.52	0.00	1.980	19.78	0.02	6.6	93.3	0.1	-0.80	0.99	0.78	0.59	—	81790	9837	46	154	10	0	0	logfile

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