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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7Ao8 | 11837 | 2022-07-03 | 2020-10-14 | 4.5 | 5.23 | 4.51 | 3.6 | 0.011 | 1.51 | 8.0 | 0.26 | 16.21 | 0.01 | 1.219 | 8.99 | 4.18 | 6.9 | 92.5 | 0.6 | -3.46 | 0.62 | 0.31 | — | 3.6 | 0.007 | 0.99 | 0.0 | 0.05 | 14.47 | 0.01 | 1.784 | 42.62 | 0.00 | 8.3 | 91.7 | 0.0 | -2.14 | 2.68 | 0.85 | 0.75 | — | 10905 | 1350 | 9 | 0 | 8 | 0 | 0 | logfile |
✔ | 7Q1Z | 13776 | 2022-07-05 | 2021-10-22 | 3.4 | 2.41 | — | 4.0 | 0.003 | 0.55 | 0.0 | 0.04 | 12.53 | 0.00 | 2.074 | 6.33 | 0.04 | 2.2 | 97.8 | 0.0 | 0.60 | 0.48 | 0.31 | -0.02 | 2.2 | 0.005 | 0.79 | 0.0 | 0.05 | 16.02 | 0.01 | 2.100 | 11.70 | 0.74 | 3.3 | 96.7 | 0.0 | -0.15 | 1.59 | 0.75 | 0.75 | 1.53 | 23694 | 2916 | 21 | 0 | 63 | 0 | 0 | logfile |
✘ | 5A7U | 3079 | 2022-07-02 | 2015-07-10 | 4.8 | 3.82 | — | 4.6 | 0.020 | 3.41 | 3.0 | 0.25 | 21.78 | 0.08 | 2.651 | 30.77 | 25.00 | 24.0 | 72.0 | 4.0 | -6.05 | -0.01 | 0.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 455 | 27 | 1 | 0 | 1 | 0 | 231 | logfile |
✘ | 7JMJ | 22396 | 2022-07-04 | 2020-07-31 | 4.5 | 5.51 | — | 4.3 | 0.007 | 1.08 | 0.0 | 0.05 | 10.58 | 0.01 | 1.373 | 10.02 | 0.62 | 11.3 | 88.5 | 0.3 | -4.67 | 0.56 | 0.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✔ | 6RWE | 10038 | 2022-07-02 | 2019-06-04 | 3.0 | 3.12 | — | 3.7 | 0.009 | 1.02 | 1.0 | 0.06 | 13.12 | 0.01 | 1.975 | 6.79 | 0.73 | 7.4 | 92.5 | 0.1 | -4.84 | 0.44 | 0.32 | 0.00 | 3.1 | 0.008 | 1.01 | 2.0 | 0.05 | 18.21 | 0.01 | 2.002 | 17.29 | 2.52 | 6.2 | 93.8 | 0.0 | -1.73 | 1.38 | 0.71 | 0.73 | 1.38 | 53719 | 6454 | 26 | 95 | 8 | 0 | 0 | logfile |
✔ | 6i1X | 0326 | 2022-07-03 | 2018-10-30 | 3.7 | 3.83 | — | 3.8 | 0.013 | 1.81 | 34.0 | 0.10 | 14.94 | 0.01 | 0.458 | 50.06 | 4.35 | 7.5 | 90.6 | 1.9 | -3.51 | 0.50 | 0.32 | 0.28 | 3.8 | 0.005 | 0.87 | 0.0 | 0.05 | 16.53 | 0.01 | 2.131 | 19.55 | 0.28 | 5.8 | 93.8 | 0.4 | -1.45 | 1.02 | 0.65 | 0.61 | 0.75 | 54915 | 7290 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 6HD5 | 0201 | 2022-07-03 | 2018-08-17 | 4.8 | 6.01 | — | 5.9 | 0.001 | 0.40 | 0.0 | 0.03 | 8.70 | 0.00 | 2.289 | 4.52 | 0.10 | 10.5 | 88.4 | 1.1 | -1.81 | 0.36 | 0.32 | — | 5.9 | 0.003 | 0.73 | 0.0 | 0.04 | 11.96 | 0.00 | 2.138 | 15.29 | 0.00 | 5.4 | 94.5 | 0.1 | -0.09 | 2.01 | 0.45 | 0.55 | — | 9707 | 1234 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YW7 | 10960 | 2022-07-03 | 2020-04-29 | 4.5 | 5.21 | — | 4.7 | 0.021 | 3.50 | 0.0 | 0.09 | 6.70 | 0.01 | 2.034 | 2.17 | 0.00 | 4.5 | 94.7 | 0.9 | -1.45 | 0.57 | 0.32 | — | 4.6 | 0.003 | 1.00 | 0.0 | 0.02 | 5.16 | 0.00 | 2.215 | 9.65 | 0.00 | 10.5 | 89.4 | 0.2 | -3.99 | 6.44 | 0.82 | 0.75 | — | 5426 | 1788 | 9 | 0 | 2 | 0 | 0 | logfile |
✔ | 6YRG | 10889 | 2022-07-05 | 2020-04-20 | 4.8 | 6.94 | — | 7.9 | 0.009 | 1.41 | 18.0 | 0.08 | 13.69 | 0.01 | 1.270 | 31.66 | 0.48 | 9.4 | 90.3 | 0.3 | -2.26 | 0.66 | 0.32 | — | 7.8 | 0.003 | 0.75 | 0.0 | 0.04 | 12.97 | 0.00 | 2.136 | 16.35 | 0.00 | 9.3 | 90.6 | 0.1 | -1.50 | 3.42 | 0.75 | 0.52 | — | 21992 | 2736 | 4 | 0 | 0 | 0 | 0 | logfile |
✘ | 5UCY | 8539 | 2022-07-05 | 2016-12-22 | 4.6 | 4.99 | — | 4.6 | 0.011 | 1.21 | 3.0 | 0.06 | 13.21 | 0.01 | 0.244 | 89.25 | 0.68 | 11.3 | 88.3 | 0.5 | -4.47 | 0.50 | 0.32 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 24990 | 2610 | 12 | 3 | 6 | 0 | 4452 | logfile |
✔ | 7FDB | 31539 | 2022-07-03 | 2021-07-16 | 4.8 | 5.04 | 4.73 | 8.8 | 0.003 | 0.57 | 0.0 | 0.04 | 13.84 | 0.00 | 1.761 | 12.65 | 0.00 | 7.3 | 92.6 | 0.0 | -0.78 | 0.66 | 0.32 | — | 4.7 | 0.005 | 0.87 | 0.0 | 0.05 | 13.83 | 0.01 | 1.970 | 28.88 | 0.03 | 7.4 | 92.6 | 0.0 | -1.66 | 2.21 | 0.77 | 0.67 | — | 64497 | 8295 | 31 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WoT | 32658 | 2022-07-06 | 2022-01-22 | 3.73 | 4.26 | — | 3.8 | 0.010 | 1.69 | 284.0 | 0.10 | 15.82 | 0.01 | 1.016 | 24.11 | 4.41 | 9.4 | 88.4 | 2.2 | -3.07 | 0.49 | 0.33 | 0.06 | 3.9 | 0.009 | 1.00 | 2.0 | 0.05 | 16.48 | 0.01 | 1.624 | 22.10 | 0.13 | 9.9 | 89.8 | 0.3 | -1.23 | 1.08 | 0.56 | 0.44 | 0.23 | 133827 | 17285 | 24 | 0 | 0 | 0 | 0 | logfile |
✘ | 7N9Y | 24264 | 2022-07-03 | 2021-06-18 | 4.8 | 4.30 | — | 2.2 | 0.019 | 1.07 | 0.0 | 0.00 | 6.04 | 0.00 | 2.538 | 0.68 | 0.00 | 8.5 | 91.1 | 0.3 | -1.98 | 0.49 | 0.33 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 7515 | 2505 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oFJ | 20047 | 2022-07-03 | 2019-03-30 | 4.5 | 5.60 | 3.27 | 7.8 | 0.007 | 0.96 | 0.0 | 0.05 | 15.74 | 0.01 | 2.135 | 3.88 | 0.00 | 7.1 | 92.9 | 0.0 | -4.36 | 0.48 | 0.33 | — | 7.8 | 0.002 | 0.57 | 0.0 | 0.04 | 14.05 | 0.00 | 1.989 | 9.61 | 0.00 | 8.0 | 92.0 | 0.0 | -2.00 | 1.40 | 0.55 | 0.54 | — | 10310 | 650 | 2 | 0 | 0 | 0 | 5142 | logfile |
✘ | 7JMi | 22395 | 2022-07-04 | 2020-07-31 | 4.5 | 6.62 | — | 4.3 | 0.004 | 0.92 | 0.0 | 0.05 | 10.07 | 0.01 | 1.373 | 7.58 | 0.31 | 10.5 | 89.3 | 0.2 | -4.79 | 0.58 | 0.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✘ | 7JMG | 22393 | 2022-07-04 | 2020-07-31 | 4.5 | 7.15 | — | 4.3 | 0.005 | 0.93 | 0.0 | 0.05 | 9.82 | 0.01 | 1.373 | 7.47 | 0.27 | 10.3 | 89.6 | 0.1 | -4.77 | 0.57 | 0.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✔ | 5YFP | 6827 | 2022-07-06 | 2017-09-21 | 4.4 | 8.20 | — | 6.7 | 0.006 | 1.33 | 0.0 | 0.06 | 12.26 | 0.01 | 2.215 | 16.92 | 0.10 | 17.8 | 81.5 | 0.7 | -6.11 | 0.83 | 0.34 | — | 5.5 | 0.004 | 1.12 | 0.0 | 0.04 | 10.78 | 0.00 | 2.024 | 26.41 | 0.10 | 17.3 | 82.4 | 0.3 | -2.42 | 3.44 | 0.91 | 0.74 | — | 33096 | 5982 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ML4 | 23908 | 2022-07-03 | 2021-04-27 | 3.1 | 4.68 | — | 2.8 | 0.006 | 0.74 | 0.0 | 0.04 | 13.76 | 0.00 | 1.382 | 21.85 | 0.53 | 9.0 | 90.8 | 0.2 | -1.53 | 0.52 | 0.34 | 0.04 | 2.4 | 0.004 | 0.70 | 0.0 | 0.04 | 15.64 | 0.00 | 1.889 | 19.37 | 0.11 | 7.9 | 92.0 | 0.1 | -0.68 | 1.80 | 0.80 | 0.77 | 1.56 | 62733 | 7907 | 42 | 91 | 138 | 0 | 0 | logfile |
✔ | 7TPP | 26060 | 2022-07-04 | 2022-01-25 | 4.1 | 4.39 | 4.20 | 7.9 | 0.002 | 0.53 | 0.0 | 0.04 | 9.16 | 0.00 | 2.240 | 10.18 | 2.87 | 21.8 | 75.4 | 2.8 | -5.30 | 0.70 | 0.35 | — | 7.8 | 0.004 | 0.84 | 0.0 | 0.05 | 12.03 | 0.00 | 2.001 | 29.05 | 0.00 | 14.1 | 85.6 | 0.3 | -3.91 | 1.28 | 0.78 | 0.69 | — | 18513 | 2309 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7EDX | 31075 | 2022-07-05 | 2021-03-17 | 4.5 | 4.87 | — | 4.1 | 0.008 | 1.09 | 34.0 | 0.07 | 16.63 | 0.01 | 1.497 | 21.08 | 3.31 | 6.1 | 93.4 | 0.5 | -3.70 | 0.67 | 0.35 | — | 3.7 | 0.005 | 0.79 | 0.0 | 0.04 | 15.52 | 0.00 | 1.980 | 19.78 | 0.02 | 6.6 | 93.3 | 0.1 | -0.80 | 0.99 | 0.78 | 0.59 | — | 81790 | 9837 | 46 | 154 | 10 | 0 | 0 | logfile |