Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7N9Y	24264	2023-02-18	2021-06-18	4.8	4.30	—	2.2	0.019	1.07	0.0	0.00	6.04	0.00	2.538	0.59	0.00	8.5	91.1	0.3	-1.98	0.49	0.33	—	2.2	0.003	1.01	0.0	0.00	4.45	0.00	2.547	7.13	0.00	19.3	80.3	0.4	-4.00	2.62	0.52	0.31	—	7515	2505	2	0	0	0	0	logfile
✔	6oFJ	20047	2023-02-19	2019-03-30	4.5	5.60	3.27	7.8	0.007	0.96	0.0	0.05	15.74	0.01	2.135	3.69	0.00	7.1	92.9	0.0	-4.36	0.48	0.33	—	7.8	0.002	0.58	0.0	0.04	14.03	0.00	2.002	10.00	0.00	8.7	91.3	0.0	-1.93	1.22	0.56	0.54	—	10310	650	2	0	0	0	5142	logfile
✔	8E5P	27917	2023-02-23	2022-08-22	4.4	9.89	6.01	8.2	0.003	0.64	0.0	0.04	11.32	0.00	1.299	26.66	1.63	1.3	98.4	0.3	-0.83	0.61	0.33	—	8.2	0.003	0.69	0.0	0.04	11.81	0.00	1.266	18.73	0.00	2.8	97.2	0.0	0.85	1.53	0.85	0.77	—	20038	2502	13	8	18	0	0	logfile
✔	7URi	26713	2023-02-16	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	25.77	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.6	0.008	1.44	0.0	0.07	23.84	0.01	2.072	23.68	0.00	0.0	0.0	0.0	—	2.06	0.08	0.38	—	1905	0	1	90	0	0	0	logfile
✔	7Uo0	26636	2023-02-19	2022-04-12	3.4	4.47	—	3.5	0.003	2.23	0.0	0.11	24.66	0.00	2.117	7.29	2.04	6.4	93.6	0.0	-0.20	0.73	0.34	1.64	3.4	0.004	0.89	0.0	0.04	26.78	0.01	2.050	25.40	1.02	10.0	90.0	0.0	-3.19	5.62	0.84	0.62	1.35	10697	112	4	455	7	0	0	logfile
✔	7NJ3	12371	2023-02-26	2021-02-15	4.48	4.72	—	4.6	0.004	0.70	1.0	0.05	13.64	0.00	1.907	8.92	0.38	4.2	95.8	0.0	-0.73	0.57	0.36	—	4.6	0.006	0.81	0.0	0.04	13.81	0.01	1.754	25.03	0.00	8.4	91.6	0.0	-2.08	2.79	0.72	0.62	—	28778	1795	6	23	0	0	13868	logfile
✔	7VQ2	32083	2023-02-24	2021-10-18	3.68	4.07	—	3.9	0.009	0.83	0.0	0.05	12.14	0.00	2.297	6.39	1.27	4.8	93.8	1.4	-3.35	0.54	0.36	1.21	4.0	0.003	0.63	0.0	0.04	14.54	0.00	1.949	10.63	0.56	6.6	93.4	0.0	0.80	1.32	0.73	0.65	1.26	23340	1416	4	0	0	0	11764	logfile
✔	6PLQ	20372	2023-02-21	2019-07-01	3.4	4.30	—	4.3	0.001	0.46	0.0	0.04	7.10	0.00	2.285	5.97	0.00	2.0	98.0	0.0	-4.40	0.57	0.36	0.62	3.9	0.004	1.00	0.0	0.05	14.57	0.00	2.135	15.79	0.58	4.9	95.1	0.0	-1.08	1.74	0.72	0.74	0.99	14240	1730	15	0	20	0	0	logfile
✔	7FJo	31625	2023-02-26	2021-08-04	3.34	3.72	—	3.5	0.012	1.56	4.0	0.09	12.63	0.02	1.277	9.35	3.26	7.2	92.4	0.4	-1.06	0.55	0.36	0.19	3.5	0.005	0.75	1.0	0.05	14.55	0.00	2.122	10.66	0.26	5.0	94.9	0.1	-0.24	1.91	0.78	0.82	1.93	28547	3640	12	0	25	0	0	logfile
✔	7KQE	22997	2023-02-26	2020-11-15	2.88	3.80	2.90	3.4	0.012	1.80	8.0	0.10	13.99	0.01	2.478	0.25	1.08	6.3	93.6	0.1	-1.09	0.73	0.37	2.42	2.9	0.003	0.59	0.0	0.04	14.25	0.00	2.025	4.48	0.77	4.4	95.6	0.0	-0.11	0.67	0.87	0.83	2.31	68370	4467	9	0	0	0	33744	logfile
✔	8E5L	27914	2023-02-23	2022-08-22	4.2	8.91	5.82	7.6	0.003	0.64	0.0	0.04	11.68	0.00	1.299	26.62	1.63	1.3	98.4	0.3	-0.83	0.63	0.37	—	7.5	0.002	0.65	0.0	0.04	12.02	0.00	1.046	16.48	0.00	2.4	97.6	0.0	0.49	1.33	0.89	0.83	—	20058	2502	13	9	18	0	0	logfile
✔	7XZX	33533	2023-02-23	2022-06-03	4.53	5.42	4.49	4.5	0.006	0.99	0.0	0.06	25.64	0.00	1.688	10.77	0.15	1.7	98.3	0.0	0.69	0.69	0.37	—	4.4	0.004	0.65	0.0	0.04	25.63	0.00	2.095	14.00	0.00	2.6	97.4	0.0	1.09	1.71	0.90	0.82	—	19270	1554	14	342	0	0	0	logfile
✔	6UE9	20751	2023-02-22	2019-09-20	2.9	3.89	—	4.2	0.007	1.04	0.0	0.06	13.76	0.01	2.241	3.10	0.32	11.2	88.8	0.0	-3.87	0.59	0.37	0.26	3.6	0.004	0.96	0.0	0.05	15.93	0.01	2.142	12.09	4.21	7.7	92.3	0.0	-1.60	1.71	0.78	0.80	1.58	18227	2475	17	0	12	0	0	logfile
✔	7V9C	31815	2023-02-24	2021-08-24	4.5	3.01	4.36	3.5	0.002	0.44	0.0	0.03	28.95	0.00	2.240	8.56	1.27	5.0	94.1	0.9	-0.37	0.60	0.38	—	2.9	0.006	0.86	0.0	0.04	29.58	0.01	2.063	26.21	0.40	5.8	93.9	0.3	-0.16	1.78	0.73	0.58	—	23228	1518	18	546	0	0	0	logfile
✔	7Pii	13437	2023-02-20	2021-08-19	2.68	2.39	—	2.7	0.010	0.78	0.0	0.05	28.29	0.00	2.229	8.23	0.31	4.0	96.0	0.0	-0.89	0.51	0.38	3.69	2.6	0.004	0.66	0.0	0.04	29.02	0.00	2.175	7.79	2.33	2.8	97.2	0.0	1.88	0.98	0.81	0.88	3.36	11192	779	12	245	0	0	0	logfile
✔	7W0F	32241	2023-02-21	2021-11-18	4.55	8.43	—	7.5	0.003	0.64	1.0	0.04	14.12	0.00	1.356	21.15	1.19	4.4	94.7	0.8	-0.94	0.71	0.38	—	7.4	0.003	0.66	0.0	0.04	14.18	0.00	2.160	18.40	0.00	5.1	94.9	0.1	-0.71	1.00	0.87	0.70	—	14097	1492	6	94	0	0	0	logfile
✔	7M3L	23656	2023-02-17	2021-03-18	3.2	4.99	—	3.3	0.009	0.97	0.0	0.06	15.05	0.01	1.551	6.78	0.30	9.1	90.6	0.3	-3.19	0.29	0.38	0.40	3.1	0.004	0.72	0.0	0.04	15.15	0.00	2.043	15.39	0.30	7.0	92.8	0.1	-0.73	3.83	0.46	0.76	1.89	6113	775	3	0	0	0	0	logfile
✔	7R5R	14334	2023-02-20	2022-02-11	2.44	3.05	—	2.9	0.004	0.66	0.0	0.04	27.14	0.00	2.226	6.02	0.31	2.5	97.5	0.0	-0.10	0.59	0.39	3.60	2.8	0.014	0.90	0.0	0.04	28.54	0.01	2.131	5.12	1.71	3.6	96.4	0.0	1.78	0.94	0.81	0.87	3.25	11625	779	12	266	0	0	0	logfile
✔	6MWQ	9277	2023-02-24	2018-10-30	3.0	3.33	2.89	3.1	0.001	0.36	0.0	0.04	4.66	0.00	2.321	4.19	0.13	11.0	87.5	1.5	-4.81	0.54	0.39	0.22	3.1	0.003	0.72	0.0	0.04	13.43	0.00	2.152	8.38	1.78	4.1	95.7	0.2	-1.12	1.34	0.78	0.87	1.94	22072	2873	8	0	0	0	0	logfile
✔	5A63	3061	2023-02-19	2015-06-24	3.4	3.50	3.42	3.5	0.010	1.68	8.0	0.11	19.25	0.01	2.079	39.51	13.74	6.4	91.5	2.1	-0.17	0.36	0.40	2.09	3.5	0.004	0.75	0.0	0.05	17.83	0.00	2.195	13.49	0.48	5.9	93.7	0.3	-0.03	3.23	0.62	0.82	2.08	10003	1223	13	0	22	0	0	logfile

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