Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7U6V	26381	2023-08-13	2022-03-06	4.1	3.17	4.21	6.8	0.002	0.52	0.0	0.04	13.79	0.00	1.948	13.74	1.57	4.7	95.3	0.0	-0.16	0.64	0.29	—	6.8	0.002	0.50	0.0	0.04	13.89	0.00	1.956	14.79	1.75	6.1	93.9	0.0	-0.54	0.42	0.82	0.72	—	9997	637	14	0	0	23	4901	logfile
✔	5Li4	4052	2023-08-16	2016-07-14	4.2	5.13	—	4.0	0.053	3.07	114.0	0.34	14.44	0.02	0.111	93.07	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.1	0.004	1.04	0.0	0.05	13.71	0.01	1.950	32.75	0.09	15.2	83.8	1.0	-3.85	4.19	0.34	0.58	—	20070	2562	6	0	0	0	0	logfile
✔	7NKC	12437	2023-08-20	2021-02-17	4.46	4.76	—	4.6	0.004	0.72	0.0	0.04	13.69	0.01	1.795	9.79	0.25	4.3	95.7	0.1	-0.76	0.51	0.30	—	4.7	0.003	0.68	0.0	0.04	14.11	0.00	1.766	20.02	0.00	6.1	93.9	0.0	-0.83	1.94	0.64	0.52	—	28788	1795	6	23	0	0	13868	logfile
✔	5G2X	3331	2023-08-15	2016-04-16	3.8	3.49	—	3.4	0.001	0.32	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.005	0.87	0.0	0.04	19.17	0.01	1.949	36.81	0.45	21.6	77.1	1.3	-5.19	1.94	0.80	0.66	0.50	19072	487	3	704	0	0	0	logfile
✔	7Q1Z	13776	2023-08-17	2021-10-22	3.4	2.41	—	4.0	0.004	0.61	0.0	0.04	12.71	0.00	2.074	6.27	0.04	2.2	97.8	0.0	0.60	0.48	0.31	-0.02	2.1	0.006	0.85	0.0	0.05	15.89	0.01	2.073	12.66	0.94	4.4	95.6	0.0	-0.31	1.64	0.75	0.76	1.74	23694	2916	21	0	63	0	0	logfile
✘	7JMH	22394	2023-08-14	2020-07-31	4.5	5.68	—	4.4	0.005	1.02	0.0	0.05	10.48	0.01	1.373	9.43	0.46	11.7	88.2	0.1	-4.60	0.56	0.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	120756	13500	12	0	3608	0	0	logfile
✔	7Ao8	11837	2023-08-12	2020-10-14	4.5	5.23	4.51	3.6	0.011	1.51	8.0	0.26	16.21	0.01	1.219	8.80	4.18	6.9	92.5	0.6	-3.46	0.62	0.31	—	3.6	0.002	0.66	0.0	0.04	14.05	0.00	1.997	16.46	0.00	3.1	96.9	0.0	-0.64	2.63	0.85	0.72	—	10905	1350	9	0	8	0	0	logfile
✘	7JMJ	22396	2023-08-14	2020-07-31	4.5	5.51	—	4.3	0.007	1.08	0.0	0.05	10.58	0.01	1.373	9.90	0.62	11.3	88.5	0.3	-4.67	0.56	0.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	120756	13500	12	0	3608	0	0	logfile
✔	7TMC	25995	2023-08-09	2022-01-19	3.25	3.24	2.95	4.2	0.005	0.72	0.0	0.07	14.28	0.01	2.152	13.78	0.00	9.5	90.5	0.0	-4.08	0.21	0.31	-0.39	3.4	0.005	0.89	0.0	0.07	17.14	0.01	2.144	18.47	0.53	12.0	88.0	0.0	-4.18	1.94	0.36	0.76	3.09	3426	405	6	0	12	0	0	logfile
✔	6CS1	7579	2023-08-18	2018-03-19	4.6	4.79	4.84	6.8	0.006	0.92	0.0	0.06	8.77	0.01	2.229	7.26	0.00	7.2	92.8	0.0	-4.20	0.61	0.31	—	4.6	0.007	1.10	1.0	0.06	11.78	0.01	1.900	35.89	0.00	11.7	88.3	0.0	-3.21	1.93	0.71	0.58	—	25995	3202	27	0	75	0	0	logfile
✔	6HD5	0201	2023-08-11	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.004	0.81	0.0	0.04	11.92	0.01	2.072	21.86	0.00	6.4	93.5	0.1	-0.40	2.04	0.46	0.56	—	9707	1234	3	0	0	0	0	logfile
✔	8F7J	28905	2023-08-09	2022-11-18	4.32	4.45	4.63	8.9	0.005	0.92	0.0	0.05	15.44	0.01	2.282	15.12	0.26	5.7	94.3	0.0	-3.18	0.38	0.32	—	4.3	0.004	0.80	0.0	0.04	13.92	0.01	2.122	24.96	0.00	9.4	90.6	0.0	-3.21	2.94	0.44	0.45	—	3321	407	1	0	0	0	0	logfile
✔	6RWE	10038	2023-08-09	2019-06-04	3.0	3.12	—	3.7	0.009	1.02	1.0	0.06	13.12	0.01	1.975	6.33	0.73	7.4	92.5	0.1	-4.84	0.44	0.32	0.00	3.1	0.008	1.06	0.0	0.06	18.26	0.01	1.845	18.12	2.92	7.6	92.3	0.0	-2.05	2.44	0.76	0.81	1.72	53719	6454	26	95	8	0	0	logfile
✔	6i1X	0326	2023-08-10	2018-10-30	3.7	3.83	—	3.8	0.013	1.81	34.0	0.10	14.94	0.01	0.458	50.06	4.35	7.5	90.6	1.9	-3.51	0.50	0.32	0.28	3.8	0.003	0.77	0.0	0.05	16.37	0.00	2.134	17.07	0.28	4.8	95.0	0.2	-0.88	1.06	0.65	0.60	0.83	54915	7290	15	0	0	0	0	logfile
✘	5UCY	8539	2023-08-18	2016-12-22	4.6	4.99	—	4.6	0.011	1.21	3.0	0.06	13.21	0.01	0.244	89.25	0.68	11.3	88.3	0.5	-4.47	0.50	0.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	24990	2610	12	3	6	0	4452	logfile
✔	6YW7	10960	2023-08-09	2020-04-29	4.5	5.21	—	4.7	0.021	3.50	0.0	0.09	6.70	0.01	2.034	2.17	0.00	4.5	94.7	0.9	-1.45	0.57	0.32	—	4.6	0.003	1.01	0.0	0.02	5.70	0.00	2.420	14.13	0.00	13.2	86.6	0.2	-3.90	6.17	0.81	0.75	—	5426	1788	9	0	2	0	0	logfile
✔	6YRG	10889	2023-08-17	2020-04-20	4.8	6.94	—	7.9	0.009	1.41	18.0	0.08	13.69	0.01	1.270	31.61	0.48	9.4	90.3	0.3	-2.26	0.66	0.32	—	7.9	0.003	0.74	0.0	0.04	13.07	0.00	2.157	15.69	0.00	9.7	90.2	0.1	-1.41	3.45	0.74	0.50	—	21992	2736	4	0	0	0	0	logfile
✔	7FDB	31539	2023-08-12	2021-07-16	4.8	5.04	4.73	8.8	0.003	0.57	0.0	0.04	13.84	0.00	1.761	12.61	0.00	7.3	92.6	0.0	-0.78	0.66	0.32	—	4.7	0.004	0.88	0.0	0.05	13.87	0.01	2.001	29.12	0.03	7.7	92.3	0.0	-1.80	2.25	0.77	0.68	—	64497	8295	31	0	0	0	0	logfile
✔	8DWi	27755	2023-08-09	2022-08-01	3.4	4.06	3.58	4.1	0.003	0.63	0.0	0.04	13.02	0.01	2.258	7.44	0.00	5.0	95.0	0.0	0.29	0.28	0.33	-0.40	4.0	0.003	0.74	0.0	0.04	16.17	0.01	2.113	11.24	0.64	5.0	95.0	0.0	-0.32	1.76	0.49	0.73	1.52	3192	424	1	0	0	0	0	logfile
✔	7UiF	26544	2023-08-12	2022-03-29	4.6	5.63	4.34	6.7	0.004	0.69	0.0	0.05	13.63	0.01	0.850	9.76	0.06	1.9	98.0	0.1	0.62	0.48	0.33	—	6.7	0.003	0.75	0.0	0.05	13.27	0.00	2.026	20.55	0.00	3.5	96.5	0.0	0.05	1.21	0.61	0.62	—	63137	7857	33	0	0	0	0	logfile

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