Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CTG	26989	2023-07-03	2022-05-14	3.8	3.16	3.72	3.3	0.004	0.98	0.0	0.05	7.62	0.01	2.113	12.33	6.90	9.7	88.5	1.8	-3.04	0.57	0.35	-0.17	2.3	0.004	0.91	0.0	0.04	7.56	0.00	2.231	7.59	1.15	15.0	84.8	0.2	-3.09	2.07	0.60	0.45	1.92	5100	1006	4	0	1	0	0	logfile
✔	7UPH	26666	2023-07-16	2022-04-15	4.18	5.35	4.33	4.2	0.007	1.00	1.0	0.05	18.96	0.02	1.193	122.79	0.02	12.5	86.5	1.0	-2.90	0.63	0.35	—	4.3	0.007	0.88	1.0	0.04	18.39	0.01	1.165	109.33	0.02	15.7	83.6	0.7	-2.80	1.34	0.87	0.78	—	141080	5442	49	4556	0	0	625	logfile
✘	7EDX	31075	2023-07-14	2021-03-17	4.5	4.87	—	4.1	0.008	1.09	34.0	0.07	16.62	0.01	1.497	20.97	3.31	6.1	93.4	0.5	-3.70	0.67	0.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	81790	9837	46	154	10	0	0	logfile
✔	7NJ3	12371	2023-07-13	2021-02-15	4.48	4.72	—	4.6	0.004	0.70	1.0	0.05	13.64	0.00	1.907	8.92	0.38	4.2	95.8	0.0	-0.73	0.57	0.36	—	4.6	0.006	0.81	0.0	0.04	13.81	0.01	1.754	25.13	0.00	8.4	91.6	0.0	-2.08	2.79	0.72	0.62	—	28778	1795	6	23	0	0	13868	logfile
✔	7FJo	31625	2023-07-13	2021-08-04	3.34	3.72	—	3.5	0.012	1.56	4.0	0.09	12.69	0.02	1.277	9.35	3.26	7.2	92.4	0.4	-1.06	0.55	0.36	0.19	3.5	0.008	0.85	0.0	0.05	14.79	0.00	2.080	12.88	0.42	5.7	94.2	0.0	-0.56	3.15	0.77	0.79	1.92	28547	3640	12	0	25	0	0	logfile
✔	7VQ2	32083	2023-07-11	2021-10-18	3.68	4.07	—	3.9	0.009	0.83	0.0	0.05	12.14	0.00	2.297	6.39	1.27	4.8	93.8	1.4	-3.35	0.54	0.36	1.21	4.0	0.003	0.63	0.0	0.04	14.54	0.00	1.949	10.63	0.56	6.6	93.4	0.0	0.80	1.32	0.73	0.65	1.26	23340	1416	4	0	0	0	11764	logfile
✔	7VPX	32074	2023-07-18	2021-10-18	3.0	3.28	—	3.1	0.009	1.32	28.0	0.17	16.60	0.01	1.018	18.59	7.75	3.5	96.2	0.3	-2.52	0.44	0.36	1.22	3.2	0.005	0.83	0.0	0.06	16.69	0.01	2.049	12.10	5.20	6.2	93.7	0.0	-0.34	1.48	0.59	0.64	1.31	43240	5611	39	319	7	0	0	logfile
✔	4V91	2599	2023-07-09	2014-03-21	3.7	3.84	—	3.8	0.133	4.77	525.0	0.43	20.66	0.07	0.695	17.94	12.79	14.1	78.2	7.8	-5.39	0.33	0.36	0.15	3.8	0.032	1.24	0.0	0.04	17.28	0.01	2.047	15.07	1.04	8.1	91.2	0.7	-2.72	2.02	0.63	0.81	1.43	125665	6450	45	3482	0	0	0	logfile
✔	6PLQ	20372	2023-07-07	2019-07-01	3.4	4.30	—	4.3	0.002	0.53	0.0	0.05	7.12	0.00	2.285	5.97	0.00	2.0	98.0	0.0	-4.40	0.57	0.36	0.62	3.9	0.004	0.98	0.0	0.05	14.71	0.00	2.167	14.91	0.45	4.9	95.1	0.0	-1.16	2.47	0.73	0.78	1.41	14240	1730	15	0	20	0	0	logfile
✔	7UiL	26548	2023-07-17	2022-03-29	4.3	9.74	4.31	8.6	0.004	0.67	0.0	0.04	13.36	0.00	0.667	9.13	0.07	1.2	98.7	0.1	0.35	0.63	0.36	—	8.6	0.003	0.62	0.0	0.04	13.43	0.00	2.049	15.02	0.00	2.6	97.4	0.0	0.35	1.62	0.77	0.64	—	37614	4641	13	0	0	0	0	logfile
✔	6UE9	20751	2023-07-09	2019-09-20	2.9	3.89	—	4.2	0.007	1.05	0.0	0.06	13.69	0.01	2.241	3.10	0.32	11.2	88.8	0.0	-3.87	0.59	0.37	0.26	3.6	0.004	1.00	0.0	0.05	15.77	0.01	2.138	12.28	4.31	7.3	92.7	0.0	-1.79	1.79	0.78	0.81	1.76	18227	2475	17	0	12	0	0	logfile
✔	6QG2	4545	2023-07-17	2019-01-10	4.55	4.79	4.48	4.5	0.009	1.44	35.0	0.09	18.65	0.00	1.236	4.68	7.64	13.2	83.4	3.4	-1.88	0.58	0.37	—	4.5	0.003	0.71	0.0	0.04	15.44	0.00	2.134	14.22	0.00	9.9	89.5	0.6	-1.62	1.67	0.70	0.57	—	38664	4961	16	0	0	0	0	logfile
✔	5MPD	3534	2023-07-18	2016-12-16	4.1	4.14	—	4.1	0.035	3.40	330.0	0.20	17.76	0.03	0.656	3.82	2.78	5.6	92.3	2.1	-2.14	0.21	0.37	—	4.1	0.004	0.81	0.0	0.04	15.26	0.00	2.095	17.29	0.00	6.2	93.6	0.2	-0.71	1.92	0.27	0.60	—	40974	5142	13	0	0	0	0	logfile
✔	8FEL	29032	2023-07-05	2022-12-06	4.64	5.02	4.40	4.5	0.001	0.35	0.0	0.04	14.88	0.00	2.191	6.97	1.98	3.8	96.2	0.0	-0.24	0.70	0.37	—	4.2	0.002	0.55	0.0	0.04	12.77	0.00	2.288	10.75	0.00	3.8	96.2	0.0	0.13	1.69	0.74	0.45	—	9201	1191	3	0	0	0	0	logfile
✔	7XZX	33533	2023-07-09	2022-06-03	4.53	5.42	4.49	4.5	0.006	0.99	0.0	0.06	25.64	0.00	1.688	10.77	0.15	1.7	98.3	0.0	0.69	0.69	0.37	—	4.4	0.004	0.65	0.0	0.04	25.63	0.00	2.095	14.00	0.00	2.6	97.4	0.0	1.09	1.71	0.90	0.82	—	19270	1554	14	342	0	0	0	logfile
✔	8E5L	27914	2023-07-10	2022-08-22	4.2	8.91	5.82	7.6	0.003	0.64	0.0	0.04	11.68	0.00	1.299	26.62	1.63	1.3	98.4	0.3	-0.83	0.63	0.37	—	7.5	0.002	0.65	0.0	0.04	12.02	0.00	1.046	16.48	0.00	2.4	97.6	0.0	0.49	1.33	0.89	0.83	—	20058	2502	13	9	18	0	0	logfile
✔	7KQE	22997	2023-07-09	2020-11-15	2.88	3.80	2.90	3.4	0.012	1.80	8.0	0.10	13.99	0.01	2.478	0.25	1.08	6.3	93.6	0.1	-1.09	0.73	0.37	2.42	2.9	0.003	0.59	0.0	0.04	14.25	0.00	2.025	4.55	0.77	4.4	95.6	0.0	-0.11	0.67	0.87	0.83	2.31	68370	4467	9	0	0	0	33744	logfile
✔	7W0F	32241	2023-07-07	2021-11-18	4.55	8.43	—	7.5	0.003	0.64	1.0	0.04	14.12	0.00	1.356	21.15	1.19	4.4	94.7	0.8	-0.94	0.71	0.38	—	7.4	0.003	0.66	0.0	0.04	14.18	0.00	2.160	18.40	0.00	5.1	94.9	0.1	-0.71	1.00	0.87	0.70	—	14097	1492	6	94	0	0	0	logfile
✔	7M3L	23656	2023-07-04	2021-03-18	3.2	4.99	—	3.3	0.009	0.97	0.0	0.06	15.05	0.01	1.551	6.78	0.30	9.1	90.6	0.3	-3.19	0.29	0.38	0.40	3.1	0.004	0.72	0.0	0.04	15.15	0.00	2.043	15.39	0.30	7.0	92.8	0.1	-0.73	3.83	0.46	0.76	1.89	6113	775	3	0	0	0	0	logfile
✔	7QGH	13955	2023-07-23	2021-12-08	4.48	9.26	—	4.8	0.016	1.62	58.0	0.11	15.10	0.01	0.197	5.44	1.41	8.8	90.2	1.0	-4.05	0.66	0.38	—	4.5	0.006	0.93	1.0	0.05	18.29	0.01	1.254	59.68	0.04	11.4	88.5	0.1	-2.68	2.11	0.85	0.78	—	147973	6046	58	4716	3	9	0	logfile

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