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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6YRK | 10890 | 2023-04-29 | 2020-04-20 | 4.1 | 4.59 | — | 4.0 | 0.014 | 1.85 | 13.0 | 0.12 | 18.90 | 0.01 | 2.473 | 6.64 | 12.77 | 6.4 | 93.2 | 0.5 | -2.49 | 0.68 | 0.44 | — | 4.1 | 0.003 | 0.72 | 0.0 | 0.04 | 14.01 | 0.00 | 2.124 | 20.91 | 0.00 | 5.0 | 94.9 | 0.1 | -1.13 | 1.88 | 0.85 | 0.68 | — | 15058 | 1937 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UiG | 26545 | 2023-04-28 | 2022-03-29 | 4.3 | 8.24 | 4.32 | 3.9 | 0.005 | 0.80 | 0.0 | 0.05 | 12.88 | 0.01 | 0.850 | 11.11 | 0.09 | 1.3 | 98.5 | 0.1 | 1.54 | 0.45 | 0.44 | — | 3.9 | 0.011 | 0.85 | 0.0 | 0.04 | 12.99 | 0.01 | 2.065 | 23.76 | 0.00 | 3.7 | 96.3 | 0.0 | 0.65 | 0.85 | 0.58 | 0.79 | — | 27580 | 3390 | 17 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Y9A | 10734 | 2023-04-20 | 2020-03-06 | 4.2 | 5.61 | — | 5.7 | 0.004 | 0.81 | 0.0 | 0.05 | 13.59 | 0.01 | 2.211 | 10.90 | 0.00 | 5.9 | 94.1 | 0.0 | -1.17 | 0.53 | 0.44 | — | 5.6 | 0.004 | 0.77 | 0.0 | 0.05 | 13.55 | 0.01 | 2.116 | 20.54 | 0.00 | 6.5 | 93.5 | 0.0 | 0.07 | 1.42 | 0.56 | 0.67 | — | 5948 | 776 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MDW | 23782 | 2023-04-20 | 2021-04-06 | 3.58 | 2.25 | 3.45 | 1.5 | 0.002 | 0.55 | 0.0 | 0.04 | 12.65 | 0.00 | 2.293 | 8.46 | 0.00 | 6.5 | 93.5 | 0.0 | -1.58 | 0.52 | 0.44 | 1.65 | 1.5 | 0.005 | 0.79 | 0.0 | 0.05 | 15.12 | 0.00 | 2.071 | 19.80 | 0.56 | 13.5 | 86.5 | 0.0 | -3.45 | 1.37 | 0.56 | 0.50 | 1.94 | 3392 | 435 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 6R1U | 4705 | 2023-04-24 | 2019-03-15 | 4.36 | 6.44 | — | 3.8 | 0.009 | 1.04 | 0.0 | 0.06 | 25.65 | 0.02 | 0.544 | 11.98 | 6.26 | 4.7 | 94.1 | 1.2 | -2.99 | 0.73 | 0.45 | — | 3.9 | 0.004 | 0.64 | 0.0 | 0.04 | 25.40 | 0.00 | 2.023 | 15.41 | 0.00 | 2.9 | 97.0 | 0.1 | 0.92 | 1.09 | 0.89 | 0.77 | — | 18394 | 1550 | 14 | 294 | 4 | 0 | 0 | logfile |
✔ | 7VNQ | 32045 | 2023-04-23 | 2021-10-11 | 2.96 | 3.80 | — | 3.5 | 0.010 | 1.02 | 0.0 | 0.06 | 15.91 | 0.01 | 2.207 | 12.52 | 6.90 | 5.7 | 93.9 | 0.4 | -1.00 | 0.50 | 0.45 | 1.23 | 3.5 | 0.005 | 0.97 | 0.0 | 0.05 | 17.95 | 0.01 | 2.111 | 22.25 | 3.20 | 5.5 | 94.3 | 0.2 | 0.74 | 1.75 | 0.59 | 0.80 | 1.55 | 15507 | 1920 | 12 | 0 | 7 | 0 | 0 | logfile |
✔ | 6R25 | 4710 | 2023-04-24 | 2019-03-15 | 4.61 | 8.06 | — | 3.8 | 0.009 | 1.05 | 0.0 | 0.06 | 25.57 | 0.02 | 1.036 | 12.86 | 5.67 | 4.9 | 93.8 | 1.3 | -2.97 | 0.74 | 0.45 | — | 3.9 | 0.003 | 0.65 | 0.0 | 0.04 | 25.62 | 0.00 | 2.041 | 14.59 | 0.00 | 2.6 | 97.4 | 0.1 | 1.18 | 1.46 | 0.88 | 0.70 | — | 18654 | 1544 | 16 | 294 | 4 | 314 | 0 | logfile |
✔ | 8EXT | 28662 | 2023-04-21 | 2022-10-25 | 4.6 | 4.06 | 4.52 | 7.3 | 0.026 | 2.04 | 0.0 | 0.12 | 10.97 | 0.01 | 2.014 | 14.28 | 2.03 | 5.3 | 93.9 | 0.8 | -0.66 | 0.53 | 0.45 | — | 7.3 | 0.003 | 0.69 | 0.0 | 0.04 | 12.72 | 0.00 | 2.143 | 16.84 | 0.00 | 7.6 | 92.4 | 0.0 | -0.51 | 1.22 | 0.61 | 0.62 | — | 8846 | 1062 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 8DWS | 27758 | 2023-04-24 | 2022-08-02 | 3.73 | 4.92 | 3.73 | 3.6 | 0.004 | 0.79 | 4.0 | 0.05 | 14.37 | 0.00 | 2.013 | 6.84 | 0.32 | 8.2 | 91.2 | 0.6 | -1.47 | 0.69 | 0.45 | 0.78 | 3.6 | 0.007 | 0.92 | 0.0 | 0.05 | 15.86 | 0.00 | 2.010 | 32.17 | 0.21 | 9.9 | 89.5 | 0.6 | -1.42 | 1.99 | 0.90 | 0.83 | 0.71 | 17229 | 2182 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7ASo | 11902 | 2023-04-25 | 2020-10-27 | 3.11 | 3.89 | — | 3.0 | 0.007 | 1.05 | 3.0 | 0.10 | 22.66 | 0.00 | 1.837 | 24.01 | 13.50 | 22.1 | 76.1 | 1.9 | -5.91 | 0.58 | 0.45 | 0.91 | 3.0 | 0.007 | 0.76 | 0.0 | 0.04 | 20.66 | 0.00 | 1.997 | 20.14 | 1.06 | 13.0 | 86.9 | 0.1 | -3.51 | 1.41 | 0.87 | 0.86 | 1.38 | 125530 | 4741 | 47 | 4249 | 0 | 0 | 0 | logfile |
✔ | 6X66 | 22071 | 2023-04-20 | 2020-05-27 | 4.2 | 6.75 | — | 8.4 | 0.016 | 1.73 | 27.0 | 0.08 | 14.04 | 0.01 | 2.162 | 21.79 | 0.38 | 12.3 | 87.7 | 0.0 | -3.77 | 0.72 | 0.45 | — | 4.2 | 0.004 | 0.84 | 0.0 | 0.05 | 12.78 | 0.00 | 1.926 | 28.73 | 0.02 | 8.6 | 91.3 | 0.1 | -2.41 | 2.90 | 0.78 | 0.63 | — | 109070 | 15548 | 117 | 0 | 0 | 0 | 0 | logfile |
✔ | 8EXQ | 28659 | 2023-04-21 | 2022-10-25 | 4.9 | 5.40 | 5.55 | 6.0 | 0.020 | 1.74 | 0.0 | 0.10 | 10.28 | 0.01 | 2.002 | 1.81 | 0.00 | 2.5 | 97.3 | 0.2 | 0.34 | 0.52 | 0.45 | — | 6.0 | 0.003 | 0.74 | 0.0 | 0.04 | 12.89 | 0.00 | 2.068 | 17.98 | 0.00 | 5.3 | 94.5 | 0.2 | -0.50 | 2.54 | 0.58 | 0.63 | — | 9304 | 1108 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 7Z9Q | 14575 | 2023-04-28 | 2022-03-21 | 3.6 | 3.22 | 3.81 | 3.4 | 0.010 | 1.54 | 9.0 | 0.09 | 12.89 | 0.01 | 1.974 | 4.74 | 0.88 | 3.4 | 96.3 | 0.3 | -1.07 | 0.53 | 0.45 | 2.01 | 3.4 | 0.004 | 0.69 | 0.0 | 0.05 | 15.47 | 0.00 | 2.150 | 10.53 | 0.60 | 3.7 | 96.3 | 0.1 | -0.26 | 1.74 | 0.73 | 0.78 | 2.20 | 27065 | 3371 | 29 | 0 | 66 | 0 | 0 | logfile |
✔ | 3J5R | 5777 | 2023-04-24 | 2013-10-28 | 4.2 | 4.88 | — | 7.2 | 0.011 | 1.57 | 0.0 | 0.09 | 20.25 | 0.01 | 1.204 | 84.36 | 28.64 | 7.8 | 91.0 | 1.2 | -0.91 | 0.58 | 0.45 | — | 7.3 | 0.003 | 0.88 | 0.0 | 0.04 | 13.21 | 0.00 | 2.219 | 17.86 | 0.00 | 6.4 | 93.2 | 0.4 | 0.16 | 1.78 | 0.67 | 0.52 | — | 17564 | 2324 | 4 | 0 | 44 | 0 | 0 | logfile |
✔ | 6NUD | 0516 | 2023-04-25 | 2019-01-31 | 3.5 | 3.80 | — | 3.7 | 0.002 | 0.43 | 0.0 | 0.03 | 11.76 | 0.00 | 2.290 | 4.84 | 0.29 | 15.0 | 83.5 | 1.5 | -5.22 | 0.53 | 0.46 | 0.65 | 3.7 | 0.004 | 0.82 | 0.0 | 0.04 | 16.71 | 0.00 | 2.146 | 15.03 | 0.24 | 10.1 | 89.9 | 0.0 | -2.41 | 2.02 | 0.73 | 0.76 | 1.77 | 20831 | 2420 | 13 | 68 | 1 | 0 | 0 | logfile |
✔ | 7LBM | 23255 | 2023-04-27 | 2021-01-08 | 4.8 | 3.22 | — | 2.3 | 0.009 | 1.08 | 22.0 | 0.06 | 16.06 | 0.01 | 1.016 | 31.82 | 1.26 | 11.3 | 88.0 | 0.7 | -3.89 | 0.57 | 0.46 | — | 2.2 | 0.006 | 0.89 | 0.0 | 0.05 | 14.76 | 0.01 | 1.897 | 20.39 | 0.01 | 8.8 | 91.0 | 0.1 | -1.14 | 1.50 | 0.61 | 0.59 | — | 129277 | 15887 | 68 | 128 | 19 | 0 | 0 | logfile |
✔ | 6QS6 | 4624 | 2023-04-29 | 2019-02-20 | 3.9 | 4.03 | 2.44 | 4.0 | 0.011 | 1.09 | 0.0 | 0.06 | 10.53 | 0.01 | 2.187 | 6.85 | 0.07 | 8.2 | 91.8 | 0.0 | -4.07 | 0.57 | 0.46 | 0.09 | 3.9 | 0.003 | 0.80 | 0.0 | 0.05 | 16.46 | 0.00 | 1.964 | 18.64 | 0.47 | 5.7 | 94.3 | 0.0 | -0.45 | 1.40 | 0.74 | 0.77 | 0.63 | 28557 | 3568 | 13 | 0 | 35 | 0 | 0 | logfile |
✔ | 8CTL | 26994 | 2023-04-20 | 2022-05-16 | 3.1 | 3.52 | 3.12 | 3.3 | 0.009 | 1.32 | 4.0 | 0.09 | 24.25 | 0.01 | 2.280 | 32.18 | 7.20 | 12.1 | 87.4 | 0.5 | -5.68 | 0.62 | 0.46 | 0.80 | 3.3 | 0.003 | 0.69 | 0.0 | 0.04 | 20.91 | 0.00 | 1.966 | 12.51 | 0.29 | 3.5 | 96.5 | 0.0 | -0.81 | 2.44 | 0.81 | 0.81 | 2.45 | 8138 | 401 | 4 | 233 | 0 | 0 | 0 | logfile |
✔ | 7JPS | 22421 | 2023-04-24 | 2020-08-09 | 4.4 | 5.22 | — | 3.8 | 0.006 | 1.19 | 1.0 | 0.06 | 16.52 | 0.01 | 2.102 | 4.24 | 0.00 | 3.1 | 96.9 | 0.0 | -2.45 | 0.67 | 0.46 | — | 3.8 | 0.003 | 0.68 | 0.0 | 0.04 | 16.15 | 0.00 | 1.932 | 14.17 | 0.00 | 3.7 | 96.3 | 0.0 | 0.10 | 1.53 | 0.83 | 0.71 | — | 16352 | 1932 | 11 | 26 | 7 | 0 | 0 | logfile |
✔ | 8DWV | 27761 | 2023-04-24 | 2022-08-02 | 3.6 | 4.99 | 3.80 | 3.6 | 0.004 | 0.74 | 4.0 | 0.05 | 14.51 | 0.00 | 2.076 | 6.82 | 0.28 | 8.8 | 90.6 | 0.6 | -1.14 | 0.69 | 0.46 | 1.16 | 3.6 | 0.005 | 0.83 | 0.0 | 0.04 | 15.89 | 0.00 | 2.019 | 27.15 | 0.28 | 10.2 | 89.5 | 0.3 | -1.19 | 2.19 | 0.88 | 0.82 | 1.05 | 16480 | 2084 | 6 | 0 | 0 | 0 | 0 | logfile |