Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8AZS	15770	2022-12-12	2022-09-06	2.9	2.78	2.55	2.8	0.011	1.50	0.0	0.12	16.09	0.01	0.017	1346.55	0.00	3.1	96.9	0.0	-1.98	0.27	0.40	5.06	3.3	0.027	3.71	25.0	0.19	25.02	0.02	1.804	345.70	17.56	51.6	42.5	5.9	-8.21	18.78	0.21	0.21	0.44	9036	1224	36	0	0	0	0	logfile
✔	5X59	6704	2022-12-15	2017-02-15	3.7	3.77	—	3.7	0.011	1.65	0.0	0.08	14.81	0.01	1.477	23.41	4.97	13.2	85.4	1.3	-3.87	0.48	0.41	0.15	3.7	0.004	1.05	0.0	0.05	15.67	0.01	2.059	19.91	0.21	12.7	87.1	0.2	-2.29	1.26	0.60	0.64	1.20	26838	3423	6	0	30	0	0	logfile
✔	7oCK	12809	2022-12-16	2021-04-27	3.6	5.02	—	8.3	0.008	0.86	0.0	0.05	14.98	0.01	1.988	36.55	0.20	7.7	92.1	0.2	-2.93	0.80	0.41	-0.16	5.6	0.004	0.93	0.0	0.05	16.79	0.01	2.043	31.81	0.23	6.0	94.0	0.1	-1.28	1.43	0.87	0.64	-0.08	28276	3666	12	0	0	0	0	logfile
✔	7R4R	14315	2022-12-22	2022-02-09	3.9	4.20	—	6.8	0.036	4.11	135.0	0.31	17.82	0.03	1.228	59.98	7.44	8.5	91.3	0.2	-3.20	0.62	0.41	-0.13	5.6	0.006	1.46	18.0	0.24	16.78	0.01	1.756	47.98	2.02	11.3	88.6	0.1	-2.93	1.31	0.69	0.62	-0.05	50505	3293	12	0	43	0	24171	logfile
✔	7MLV	23911	2022-12-13	2021-04-29	4.1	4.82	—	3.9	0.004	0.98	0.0	0.06	11.47	0.01	2.168	5.10	0.00	7.1	92.9	0.0	-5.14	0.62	0.41	—	3.9	0.004	0.77	0.0	0.04	12.41	0.00	2.107	22.33	0.00	9.0	91.0	0.0	-3.06	1.67	0.70	0.70	—	15055	1919	16	0	22	0	0	logfile
✔	8E5o	27916	2022-12-20	2022-08-22	4.4	5.37	4.31	3.8	0.010	1.17	3.0	0.07	15.06	0.01	1.211	13.45	4.25	8.8	90.5	0.7	-4.35	0.69	0.41	—	3.3	0.002	0.60	0.0	0.04	13.60	0.00	1.919	36.45	0.00	5.9	94.0	0.1	-0.26	1.76	0.90	0.77	—	39229	3350	10	87	3	0	11229	logfile
✔	7NKi	12440	2022-12-16	2021-02-18	4.67	4.96	—	4.6	0.004	0.67	0.0	0.04	13.49	0.01	1.908	8.85	0.00	4.0	96.0	0.0	-0.64	0.67	0.41	—	4.6	0.004	0.71	0.0	0.04	14.08	0.01	1.877	24.40	0.00	7.5	92.5	0.0	-1.33	2.36	0.80	0.65	—	28775	1794	6	23	0	0	13868	logfile
✔	6G90	4364	2022-12-13	2018-04-10	4.0	4.12	—	3.9	0.009	1.30	2.0	0.07	12.62	0.03	1.687	19.08	0.57	7.8	91.4	0.8	-3.55	0.51	0.41	—	3.9	0.004	0.90	0.0	0.04	15.17	0.01	2.031	18.36	0.29	7.4	92.3	0.3	-0.88	3.85	0.57	0.57	—	65050	6796	43	474	223	0	0	logfile
✔	8D6X	27225	2022-12-14	2022-06-06	3.2	10.22	—	—	0.003	0.62	0.0	0.04	12.14	0.00	2.195	17.80	0.06	2.6	97.4	0.0	1.17	0.70	0.42	0.14	—	0.003	0.70	0.0	0.04	14.56	0.00	2.047	30.78	0.28	5.0	95.0	0.0	0.03	4.65	0.60	0.35	0.08	68362	8957	41	0	0	0	0	logfile
✔	7U5S	26357	2022-12-21	2022-03-02	4.16	3.37	4.30	4.2	0.008	1.02	0.0	0.06	14.83	0.01	2.265	9.16	0.00	6.0	94.0	0.0	-4.93	0.57	0.42	—	4.1	0.003	0.78	0.0	0.05	13.45	0.00	2.110	16.92	0.00	5.0	95.0	0.0	-1.27	1.05	0.65	0.61	—	23086	3006	2	0	0	0	0	logfile
✔	6JXA	9892	2022-12-13	2019-04-23	4.3	4.65	—	4.2	0.017	1.81	3.0	0.10	9.08	0.01	1.926	29.80	2.04	12.2	79.3	8.5	-2.72	0.49	0.42	—	4.2	0.003	0.90	0.0	0.04	11.48	0.00	2.173	16.33	0.00	15.8	81.5	2.7	-1.63	0.94	0.65	0.62	—	14100	2244	1	0	0	0	0	logfile
✔	6HDD	0204	2022-12-16	2018-08-17	4.5	5.28	—	4.4	0.009	1.36	3.0	0.08	12.60	0.01	2.220	12.08	1.07	18.3	81.6	0.1	-6.11	0.74	0.42	—	8.5	0.004	1.01	0.0	0.05	13.22	0.01	1.497	26.00	0.00	17.4	82.2	0.4	-3.46	5.55	0.82	0.49	—	28154	3605	7	0	0	0	0	logfile
✔	7CQ7	30438	2022-12-13	2020-08-08	3.55	3.95	—	4.0	0.008	1.07	0.0	0.06	10.32	0.01	1.915	5.84	0.07	9.3	90.7	0.0	-4.47	0.39	0.42	0.13	3.9	0.003	0.85	0.0	0.04	15.09	0.00	2.105	13.99	0.54	6.9	93.1	0.0	-0.82	1.30	0.50	0.68	-0.06	13810	1766	8	0	9	0	0	logfile
✔	7WD9	32435	2022-12-14	2021-12-21	3.7	4.02	—	3.8	0.003	0.45	0.0	0.04	7.35	0.00	1.967	2.83	0.00	4.2	95.6	0.1	-1.79	0.57	0.42	0.74	3.8	0.004	0.66	0.0	0.04	13.67	0.00	1.862	13.06	0.38	6.6	93.2	0.1	-0.95	1.33	0.75	0.69	1.01	69720	4533	9	0	0	0	34404	logfile
✔	6FU8	4319	2022-12-11	2018-02-26	3.2	4.43	2.97	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.003	0.82	0.0	0.04	14.91	0.00	2.261	15.40	0.00	10.0	88.8	1.2	-1.84	3.11	0.23	0.62	-0.89	1364	82	1	0	0	0	711	logfile
✔	7X2A	32963	2022-12-16	2022-02-25	2.49	2.71	—	1.8	0.013	1.51	6.0	0.11	12.93	0.00	1.682	7.02	6.68	2.2	97.6	0.2	2.33	0.57	0.42	1.04	1.8	0.006	0.86	0.0	0.05	15.39	0.01	1.938	15.62	2.61	4.1	95.8	0.1	-0.35	1.80	0.83	0.80	2.16	26800	3486	5	0	0	0	0	logfile
✔	7JGF	22325	2022-12-11	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.85	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.7	0.002	0.54	0.0	0.04	13.15	0.00	2.122	55.35	0.41	7.3	92.7	0.0	0.66	0.66	0.42	0.46	—	4477	532	1	0	0	0	30	logfile
✔	6XTB	10618	2022-12-11	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.004	1.06	0.0	0.05	7.90	0.00	2.205	9.62	0.00	22.1	77.9	0.0	-5.53	2.43	0.34	0.64	—	1161	235	1	0	0	0	0	logfile
✘	6D00	7782	2022-12-20	2018-04-09	4.0	3.65	—	3.0	0.001	0.45	0.0	0.04	9.42	0.00	2.284	4.03	0.05	6.5	92.8	0.7	-4.95	0.62	0.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	38328	4824	12	0	12	0	0	logfile
✔	7XoB	33343	2022-12-18	2022-05-01	3.3	2.37	3.36	2.1	0.005	0.91	12.0	0.08	13.68	0.01	1.329	8.16	0.57	4.9	95.0	0.2	-3.07	0.57	0.43	1.44	2.1	0.004	0.75	0.0	0.05	16.33	0.00	2.077	11.56	0.57	4.9	95.1	0.0	-0.95	1.25	0.74	0.78	2.13	34108	4260	10	0	39	0	0	logfile

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