Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6YRK	10890	2023-04-29	2020-04-20	4.1	4.59	—	4.0	0.014	1.85	13.0	0.12	18.90	0.01	2.473	6.64	12.77	6.4	93.2	0.5	-2.49	0.68	0.44	—	4.1	0.003	0.72	0.0	0.04	14.01	0.00	2.124	20.91	0.00	5.0	94.9	0.1	-1.13	1.88	0.85	0.68	—	15058	1937	2	0	0	0	0	logfile
✔	7UiG	26545	2023-04-28	2022-03-29	4.3	8.24	4.32	3.9	0.005	0.80	0.0	0.05	12.88	0.01	0.850	11.11	0.09	1.3	98.5	0.1	1.54	0.45	0.44	—	3.9	0.011	0.85	0.0	0.04	12.99	0.01	2.065	23.76	0.00	3.7	96.3	0.0	0.65	0.85	0.58	0.79	—	27580	3390	17	0	0	0	0	logfile
✔	6Y9A	10734	2023-04-20	2020-03-06	4.2	5.61	—	5.7	0.004	0.81	0.0	0.05	13.59	0.01	2.211	10.90	0.00	5.9	94.1	0.0	-1.17	0.53	0.44	—	5.6	0.004	0.77	0.0	0.05	13.55	0.01	2.116	20.54	0.00	6.5	93.5	0.0	0.07	1.42	0.56	0.67	—	5948	776	4	0	0	0	0	logfile
✔	7MDW	23782	2023-04-20	2021-04-06	3.58	2.25	3.45	1.5	0.002	0.55	0.0	0.04	12.65	0.00	2.293	8.46	0.00	6.5	93.5	0.0	-1.58	0.52	0.44	1.65	1.5	0.005	0.79	0.0	0.05	15.12	0.00	2.071	19.80	0.56	13.5	86.5	0.0	-3.45	1.37	0.56	0.50	1.94	3392	435	4	0	1	0	0	logfile
✔	6R1U	4705	2023-04-24	2019-03-15	4.36	6.44	—	3.8	0.009	1.04	0.0	0.06	25.65	0.02	0.544	11.98	6.26	4.7	94.1	1.2	-2.99	0.73	0.45	—	3.9	0.004	0.64	0.0	0.04	25.40	0.00	2.023	15.41	0.00	2.9	97.0	0.1	0.92	1.09	0.89	0.77	—	18394	1550	14	294	4	0	0	logfile
✔	7VNQ	32045	2023-04-23	2021-10-11	2.96	3.80	—	3.5	0.010	1.02	0.0	0.06	15.91	0.01	2.207	12.52	6.90	5.7	93.9	0.4	-1.00	0.50	0.45	1.23	3.5	0.005	0.97	0.0	0.05	17.95	0.01	2.111	22.25	3.20	5.5	94.3	0.2	0.74	1.75	0.59	0.80	1.55	15507	1920	12	0	7	0	0	logfile
✔	6R25	4710	2023-04-24	2019-03-15	4.61	8.06	—	3.8	0.009	1.05	0.0	0.06	25.57	0.02	1.036	12.86	5.67	4.9	93.8	1.3	-2.97	0.74	0.45	—	3.9	0.003	0.65	0.0	0.04	25.62	0.00	2.041	14.59	0.00	2.6	97.4	0.1	1.18	1.46	0.88	0.70	—	18654	1544	16	294	4	314	0	logfile
✔	8EXT	28662	2023-04-21	2022-10-25	4.6	4.06	4.52	7.3	0.026	2.04	0.0	0.12	10.97	0.01	2.014	14.28	2.03	5.3	93.9	0.8	-0.66	0.53	0.45	—	7.3	0.003	0.69	0.0	0.04	12.72	0.00	2.143	16.84	0.00	7.6	92.4	0.0	-0.51	1.22	0.61	0.62	—	8846	1062	4	0	2	0	0	logfile
✔	8DWS	27758	2023-04-24	2022-08-02	3.73	4.92	3.73	3.6	0.004	0.79	4.0	0.05	14.37	0.00	2.013	6.84	0.32	8.2	91.2	0.6	-1.47	0.69	0.45	0.78	3.6	0.007	0.92	0.0	0.05	15.86	0.00	2.010	32.17	0.21	9.9	89.5	0.6	-1.42	1.99	0.90	0.83	0.71	17229	2182	7	0	0	0	0	logfile
✔	7ASo	11902	2023-04-25	2020-10-27	3.11	3.89	—	3.0	0.007	1.05	3.0	0.10	22.66	0.00	1.837	24.01	13.50	22.1	76.1	1.9	-5.91	0.58	0.45	0.91	3.0	0.007	0.76	0.0	0.04	20.66	0.00	1.997	20.14	1.06	13.0	86.9	0.1	-3.51	1.41	0.87	0.86	1.38	125530	4741	47	4249	0	0	0	logfile
✔	6X66	22071	2023-04-20	2020-05-27	4.2	6.75	—	8.4	0.016	1.73	27.0	0.08	14.04	0.01	2.162	21.79	0.38	12.3	87.7	0.0	-3.77	0.72	0.45	—	4.2	0.004	0.84	0.0	0.05	12.78	0.00	1.926	28.73	0.02	8.6	91.3	0.1	-2.41	2.90	0.78	0.63	—	109070	15548	117	0	0	0	0	logfile
✔	8EXQ	28659	2023-04-21	2022-10-25	4.9	5.40	5.55	6.0	0.020	1.74	0.0	0.10	10.28	0.01	2.002	1.81	0.00	2.5	97.3	0.2	0.34	0.52	0.45	—	6.0	0.003	0.74	0.0	0.04	12.89	0.00	2.068	17.98	0.00	5.3	94.5	0.2	-0.50	2.54	0.58	0.63	—	9304	1108	4	0	2	0	0	logfile
✔	7Z9Q	14575	2023-04-28	2022-03-21	3.6	3.22	3.81	3.4	0.010	1.54	9.0	0.09	12.89	0.01	1.974	4.74	0.88	3.4	96.3	0.3	-1.07	0.53	0.45	2.01	3.4	0.004	0.69	0.0	0.05	15.47	0.00	2.150	10.53	0.60	3.7	96.3	0.1	-0.26	1.74	0.73	0.78	2.20	27065	3371	29	0	66	0	0	logfile
✔	3J5R	5777	2023-04-24	2013-10-28	4.2	4.88	—	7.2	0.011	1.57	0.0	0.09	20.25	0.01	1.204	84.36	28.64	7.8	91.0	1.2	-0.91	0.58	0.45	—	7.3	0.003	0.88	0.0	0.04	13.21	0.00	2.219	17.86	0.00	6.4	93.2	0.4	0.16	1.78	0.67	0.52	—	17564	2324	4	0	44	0	0	logfile
✔	6NUD	0516	2023-04-25	2019-01-31	3.5	3.80	—	3.7	0.002	0.43	0.0	0.03	11.76	0.00	2.290	4.84	0.29	15.0	83.5	1.5	-5.22	0.53	0.46	0.65	3.7	0.004	0.82	0.0	0.04	16.71	0.00	2.146	15.03	0.24	10.1	89.9	0.0	-2.41	2.02	0.73	0.76	1.77	20831	2420	13	68	1	0	0	logfile
✔	7LBM	23255	2023-04-27	2021-01-08	4.8	3.22	—	2.3	0.009	1.08	22.0	0.06	16.06	0.01	1.016	31.82	1.26	11.3	88.0	0.7	-3.89	0.57	0.46	—	2.2	0.006	0.89	0.0	0.05	14.76	0.01	1.897	20.39	0.01	8.8	91.0	0.1	-1.14	1.50	0.61	0.59	—	129277	15887	68	128	19	0	0	logfile
✔	6QS6	4624	2023-04-29	2019-02-20	3.9	4.03	2.44	4.0	0.011	1.09	0.0	0.06	10.53	0.01	2.187	6.85	0.07	8.2	91.8	0.0	-4.07	0.57	0.46	0.09	3.9	0.003	0.80	0.0	0.05	16.46	0.00	1.964	18.64	0.47	5.7	94.3	0.0	-0.45	1.40	0.74	0.77	0.63	28557	3568	13	0	35	0	0	logfile
✔	8CTL	26994	2023-04-20	2022-05-16	3.1	3.52	3.12	3.3	0.009	1.32	4.0	0.09	24.25	0.01	2.280	32.18	7.20	12.1	87.4	0.5	-5.68	0.62	0.46	0.80	3.3	0.003	0.69	0.0	0.04	20.91	0.00	1.966	12.51	0.29	3.5	96.5	0.0	-0.81	2.44	0.81	0.81	2.45	8138	401	4	233	0	0	0	logfile
✔	7JPS	22421	2023-04-24	2020-08-09	4.4	5.22	—	3.8	0.006	1.19	1.0	0.06	16.52	0.01	2.102	4.24	0.00	3.1	96.9	0.0	-2.45	0.67	0.46	—	3.8	0.003	0.68	0.0	0.04	16.15	0.00	1.932	14.17	0.00	3.7	96.3	0.0	0.10	1.53	0.83	0.71	—	16352	1932	11	26	7	0	0	logfile
✔	8DWV	27761	2023-04-24	2022-08-02	3.6	4.99	3.80	3.6	0.004	0.74	4.0	0.05	14.51	0.00	2.076	6.82	0.28	8.8	90.6	0.6	-1.14	0.69	0.46	1.16	3.6	0.005	0.83	0.0	0.04	15.89	0.00	2.019	27.15	0.28	10.2	89.5	0.3	-1.19	2.19	0.88	0.82	1.05	16480	2084	6	0	0	0	0	logfile

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