Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5X59	6704	2023-07-12	2017-02-15	3.7	3.77	—	3.7	0.011	1.66	0.0	0.08	14.57	0.01	1.477	23.24	4.97	13.2	85.4	1.3	-3.87	0.48	0.41	0.15	3.7	0.005	1.02	0.0	0.05	15.80	0.01	1.921	22.27	0.65	13.4	86.4	0.2	-2.42	1.59	0.60	0.65	1.20	26838	3423	6	0	30	0	0	logfile
✔	7R4R	14315	2023-07-20	2022-02-09	3.9	4.20	—	6.8	0.036	4.11	135.0	0.31	17.67	0.03	1.228	59.98	7.44	8.5	91.3	0.2	-3.20	0.62	0.41	-0.13	5.8	0.004	1.38	17.0	0.24	16.50	0.00	1.894	28.07	2.09	8.3	91.6	0.1	-2.33	1.31	0.68	0.60	-0.04	50505	3293	12	0	43	0	24171	logfile
✔	7NKi	12440	2023-07-13	2021-02-18	4.67	4.96	—	4.6	0.004	0.67	0.0	0.04	13.49	0.01	1.908	8.85	0.00	4.0	96.0	0.0	-0.64	0.67	0.41	—	4.6	0.003	0.69	0.0	0.04	14.03	0.00	1.901	21.72	0.00	6.5	93.5	0.0	-1.27	2.38	0.80	0.65	—	28775	1794	6	23	0	0	13868	logfile
✔	7U5S	26357	2023-07-19	2022-03-02	4.16	3.37	4.30	4.2	0.008	1.02	0.0	0.06	14.83	0.01	2.265	9.16	0.00	6.0	94.0	0.0	-4.93	0.57	0.42	—	4.2	0.004	0.79	0.0	0.05	13.36	0.01	2.101	18.63	0.04	5.2	94.8	0.0	-1.36	1.03	0.65	0.62	—	23086	3006	2	0	0	0	0	logfile
✔	7X2A	32963	2023-07-14	2022-02-25	2.49	2.71	—	1.8	0.013	1.51	6.0	0.11	12.93	0.00	1.682	6.97	6.68	2.2	97.6	0.2	2.33	0.57	0.42	1.04	1.8	0.004	0.80	0.0	0.05	15.31	0.00	2.027	14.46	2.07	3.8	96.2	0.1	-0.27	1.78	0.82	0.79	2.19	26800	3486	5	0	0	0	0	logfile
✔	6HDD	0204	2023-07-13	2018-08-17	4.5	5.28	—	4.4	0.009	1.36	3.0	0.08	12.60	0.01	2.220	12.08	1.07	18.3	81.6	0.1	-6.11	0.74	0.42	—	8.5	0.005	1.07	0.0	0.05	13.67	0.01	1.438	29.15	0.00	16.5	83.1	0.4	-3.27	5.54	0.87	0.54	—	28154	3605	7	0	0	0	0	logfile
✔	6JXA	9892	2023-07-07	2019-04-23	4.3	4.65	—	4.2	0.017	1.81	3.0	0.10	9.08	0.01	1.926	29.72	2.04	12.2	79.3	8.5	-2.72	0.49	0.42	—	4.2	0.005	1.04	0.0	0.05	11.62	0.01	2.085	25.04	0.00	17.4	79.8	2.8	-2.41	0.95	0.65	0.59	—	14100	2244	1	0	0	0	0	logfile
✔	7WD9	32435	2023-07-10	2021-12-21	3.7	4.02	—	3.8	0.003	0.46	0.0	0.04	7.35	0.00	1.967	2.78	0.00	4.2	95.6	0.1	-1.79	0.57	0.42	0.74	3.8	0.003	0.64	0.0	0.04	13.62	0.00	1.877	11.74	0.23	5.5	94.4	0.1	-0.85	1.33	0.75	0.68	1.07	69720	4533	9	0	0	0	34404	logfile
✘	7CQ7	30438	2023-07-07	2020-08-08	3.55	3.95	—	4.0	0.008	1.07	0.0	0.06	10.33	0.01	1.915	5.84	0.07	9.3	90.7	0.0	-4.47	0.39	0.42	0.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13810	1766	8	0	9	0	0	logfile
✔	8D6X	27225	2023-07-09	2022-06-06	3.2	10.22	—	—	0.003	0.62	0.0	0.04	12.14	0.00	2.195	17.76	0.06	2.6	97.4	0.0	1.17	0.70	0.42	0.14	—	0.003	0.68	0.0	0.04	14.52	0.00	2.006	31.08	0.17	4.9	95.1	0.0	0.20	4.65	0.78	0.54	0.09	68362	8957	41	0	0	0	0	logfile
✔	8G6i	29770	2023-07-06	2023-02-15	4.23	4.53	4.35	4.2	0.003	0.68	0.0	0.05	13.10	0.01	2.143	10.55	0.00	9.3	90.4	0.3	-3.49	0.69	0.42	—	4.2	0.003	0.72	0.0	0.05	13.49	0.00	2.145	16.76	0.00	11.4	88.3	0.2	-3.44	2.50	0.72	0.50	—	13287	1665	5	0	4	0	0	logfile
✔	8HLZ	34886	2023-07-11	2022-12-02	3.5	3.89	3.48	3.4	0.010	1.15	1.0	0.06	21.96	0.01	1.958	26.05	25.98	11.7	86.6	1.8	-4.60	0.61	0.42	0.73	3.5	0.003	0.77	0.0	0.04	17.44	0.00	2.070	15.37	0.50	7.6	91.9	0.5	-1.62	1.98	0.74	0.63	0.86	24718	3034	6	0	0	0	0	logfile
✔	3JD6	6425	2023-07-18	2016-04-12	4.1	5.00	—	4.6	0.026	2.70	32.0	0.12	14.71	0.02	1.693	5.06	0.00	13.3	86.1	0.6	-3.14	0.60	0.42	—	4.3	0.004	0.73	0.0	0.04	13.73	0.00	1.904	14.36	0.00	17.3	82.7	0.0	-2.33	2.17	0.85	0.80	—	43088	2672	16	0	0	0	21216	logfile
✔	6FU8	4319	2023-07-03	2018-02-26	3.2	4.43	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.004	0.85	0.0	0.04	15.02	0.00	2.243	16.86	0.00	11.2	87.5	1.2	-1.85	3.09	0.23	0.62	-0.89	1364	82	1	0	0	0	711	logfile
✘	6KN8	0729	2023-07-05	2019-08-03	4.8	8.89	—	8.4	0.019	1.81	10.0	0.10	12.39	0.01	2.211	9.21	0.41	2.0	97.4	0.5	-0.24	0.74	0.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	60966	7669	44	0	15	0	0	logfile
✔	6PB6	20288	2023-07-10	2019-06-13	4.29	5.03	—	4.3	0.010	1.13	0.0	0.05	16.04	0.01	1.968	10.82	0.11	10.6	89.1	0.3	-4.79	0.68	0.43	—	4.3	0.003	0.68	0.0	0.04	16.93	0.00	1.881	17.30	0.00	8.7	91.3	0.1	-2.58	0.93	0.83	0.74	—	69824	4091	13	156	5	0	34388	logfile
✔	6PMJ	20395	2023-07-04	2019-07-02	3.91	5.34	—	4.4	0.011	1.21	0.0	0.06	15.82	0.01	2.011	11.04	0.31	10.4	89.3	0.3	-4.41	0.67	0.43	0.20	4.4	0.003	0.71	0.0	0.04	17.51	0.00	1.817	21.36	0.34	8.4	91.4	0.1	-2.26	1.66	0.89	0.77	0.03	57984	3453	10	110	4	0	28609	logfile
✔	6PB4	20286	2023-07-10	2019-06-13	4.35	5.03	—	4.3	0.010	1.16	0.0	0.06	16.29	0.01	1.840	11.04	0.06	11.5	88.1	0.4	-4.77	0.69	0.43	—	4.2	0.003	0.68	0.0	0.04	16.64	0.00	1.509	17.65	0.00	8.8	91.1	0.2	-2.71	1.23	0.83	0.73	—	69922	4091	14	158	6	0	34409	logfile
✔	8ANE	15540	2023-07-16	2022-08-05	3.2	2.95	3.14	3.2	0.003	0.64	0.0	0.04	15.69	0.01	2.198	3.35	0.93	4.6	95.4	0.0	-1.93	0.55	0.43	0.13	3.1	0.004	0.72	0.0	0.04	17.74	0.01	1.785	11.70	0.22	5.7	94.3	0.0	-1.51	2.69	0.66	0.64	1.03	36740	2212	8	66	0	0	18195	logfile
✔	7XZZ	33535	2023-07-09	2022-06-03	4.07	5.32	3.99	4.6	0.006	0.92	0.0	0.06	25.15	0.00	1.717	11.14	0.15	1.7	98.3	0.0	0.69	0.70	0.43	—	4.6	0.003	0.66	0.0	0.04	25.57	0.00	2.008	13.06	0.07	1.6	98.4	0.0	1.28	0.88	0.87	0.80	—	18623	1554	14	310	0	0	0	logfile

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