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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7URi | 26713 | 2024-03-10 | 2022-04-22 | 2.6 | 2.67 | 2.95 | 2.6 | 0.009 | 1.37 | 0.0 | 0.12 | 30.06 | 0.01 | 2.201 | 7.31 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.05 | 0.34 | — | 2.6 | 0.007 | 1.42 | 0.0 | 0.07 | 28.72 | 0.01 | 2.070 | 25.42 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.08 | 0.08 | 0.38 | — | 1905 | 0 | 1 | 90 | 0 | 0 | 0 | logfile |
✔ | 5YFP | 6827 | 2024-03-22 | 2017-09-21 | 4.4 | 8.20 | — | 6.7 | 0.006 | 1.35 | 0.0 | 0.06 | 12.26 | 0.01 | 2.215 | 16.92 | 0.10 | 17.8 | 81.5 | 0.7 | -6.11 | 0.83 | 0.34 | — | 5.5 | 0.004 | 1.01 | 0.0 | 0.05 | 10.83 | 0.00 | 2.033 | 24.83 | 0.10 | 16.3 | 83.5 | 0.2 | -2.27 | 3.38 | 0.90 | 0.70 | — | 33096 | 5982 | 8 | 0 | 0 | 0 | 0 | logfile |
✘ | 7JMG | 22393 | 2024-03-14 | 2020-07-31 | 4.5 | 7.15 | — | 4.3 | 0.005 | 0.93 | 0.0 | 0.05 | 9.82 | 0.01 | 1.373 | 7.38 | 0.27 | 10.3 | 89.6 | 0.1 | -4.77 | 0.57 | 0.34 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✔ | 7JMi | 22395 | 2024-03-14 | 2020-07-31 | 4.5 | 6.62 | — | 4.3 | 0.004 | 0.92 | 0.0 | 0.05 | 10.07 | 0.01 | 1.373 | 7.47 | 0.31 | 10.5 | 89.3 | 0.2 | -4.79 | 0.58 | 0.34 | — | 4.2 | 0.004 | 0.91 | 0.0 | 0.05 | 11.41 | 0.01 | 1.586 | 21.66 | 0.00 | 11.8 | 88.0 | 0.2 | -3.52 | 0.81 | 0.81 | 0.69 | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✔ | 7WHD | 32499 | 2024-03-22 | 2021-12-30 | 2.65 | 3.19 | — | 3.9 | 0.006 | 0.71 | 0.0 | 0.05 | 14.15 | 0.00 | 1.554 | 11.40 | 0.93 | 9.1 | 90.8 | 0.1 | -1.88 | 0.61 | 0.35 | 0.03 | 3.1 | 0.004 | 0.88 | 0.0 | 0.05 | 16.23 | 0.01 | 2.092 | 12.77 | 3.31 | 7.6 | 92.4 | 0.0 | -1.65 | 1.55 | 0.85 | 0.82 | 1.87 | 34209 | 4331 | 29 | 0 | 54 | 0 | 0 | logfile |
✔ | 7EDX | 31075 | 2024-03-18 | 2021-03-17 | 4.5 | 4.87 | — | 4.1 | 0.008 | 1.09 | 34.0 | 0.07 | 16.72 | 0.01 | 1.497 | 20.97 | 3.31 | 6.1 | 93.4 | 0.5 | -3.70 | 0.67 | 0.35 | — | 3.7 | 0.003 | 0.68 | 0.0 | 0.04 | 15.38 | 0.00 | 2.106 | 13.40 | 0.00 | 4.9 | 95.0 | 0.1 | -0.23 | 0.92 | 0.78 | 0.58 | — | 81790 | 9837 | 46 | 154 | 10 | 0 | 0 | logfile |
✔ | 8REE | 19084 | 2024-03-20 | 2023-12-10 | 3.8 | 4.28 | 4.01 | 4.1 | 0.003 | 0.64 | 0.0 | 0.04 | 19.58 | 0.01 | 1.936 | 11.03 | 0.38 | 5.7 | 94.3 | 0.1 | -0.72 | 0.61 | 0.35 | -0.14 | 3.9 | 0.004 | 0.80 | 0.0 | 0.04 | 19.80 | 0.00 | 1.996 | 17.32 | 3.25 | 7.3 | 92.6 | 0.1 | -1.09 | 1.48 | 0.88 | 0.83 | 0.99 | 28605 | 3617 | 10 | 103 | 3 | 0 | 0 | logfile |
✔ | 7UPH | 26666 | 2024-03-19 | 2022-04-15 | 4.18 | 5.35 | 4.33 | 4.2 | 0.007 | 1.00 | 1.0 | 0.05 | 25.16 | 0.02 | 1.193 | 122.79 | 0.02 | 12.5 | 86.5 | 1.0 | -2.90 | 0.63 | 0.35 | — | 4.3 | 0.008 | 1.04 | 1.0 | 0.05 | 24.74 | 0.01 | 1.163 | 125.76 | 0.02 | 16.1 | 83.1 | 0.8 | -3.10 | 1.33 | 0.87 | 0.78 | — | 141080 | 5442 | 49 | 4556 | 0 | 0 | 625 | logfile |
✔ | 7YNL | 33965 | 2024-03-10 | 2022-07-31 | 2.6 | 2.16 | 2.41 | 3.2 | 0.009 | 2.40 | 0.0 | 0.06 | 16.15 | 0.05 | 2.128 | 26.40 | 0.00 | 8.9 | 91.1 | 0.0 | -6.11 | 0.27 | 0.35 | 2.03 | 3.3 | 0.004 | 0.95 | 0.0 | 0.05 | 17.95 | 0.00 | 2.132 | 13.07 | 5.62 | 10.5 | 89.5 | 0.0 | -4.17 | 3.16 | 0.40 | 0.63 | 2.60 | 4080 | 464 | 16 | 0 | 16 | 0 | 0 | logfile |
✔ | 8CTG | 26989 | 2024-03-10 | 2022-05-14 | 3.8 | 3.16 | 3.72 | 3.3 | 0.004 | 0.98 | 0.0 | 0.05 | 7.62 | 0.01 | 2.113 | 12.33 | 6.90 | 9.7 | 88.5 | 1.8 | -3.04 | 0.57 | 0.35 | -0.17 | 2.3 | 0.004 | 0.92 | 0.0 | 0.04 | 7.32 | 0.01 | 2.256 | 7.71 | 1.15 | 15.6 | 84.1 | 0.3 | -3.25 | 2.05 | 0.60 | 0.45 | 1.36 | 5100 | 1006 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7VQ2 | 32083 | 2024-03-19 | 2021-10-18 | 3.68 | 4.07 | — | 3.9 | 0.009 | 0.83 | 0.0 | 0.05 | 12.14 | 0.00 | 2.297 | 6.39 | 1.27 | 4.8 | 93.8 | 1.4 | -3.35 | 0.54 | 0.36 | 1.21 | 4.0 | 0.003 | 0.59 | 0.0 | 0.04 | 14.39 | 0.00 | 2.032 | 10.20 | 1.83 | 6.0 | 94.0 | 0.0 | 1.18 | 1.29 | 0.72 | 0.63 | 1.39 | 23340 | 1416 | 4 | 0 | 0 | 0 | 11764 | logfile |
✔ | 7FJo | 31625 | 2024-03-20 | 2021-08-04 | 3.34 | 3.72 | — | 3.5 | 0.012 | 1.56 | 4.0 | 0.09 | 12.54 | 0.02 | 1.277 | 9.35 | 3.26 | 7.2 | 92.4 | 0.4 | -1.06 | 0.55 | 0.36 | 0.19 | 3.5 | 0.008 | 0.90 | 0.0 | 0.05 | 14.86 | 0.00 | 2.029 | 14.34 | 2.02 | 6.2 | 93.7 | 0.1 | -0.68 | 1.94 | 0.78 | 0.82 | 1.95 | 28547 | 3640 | 12 | 0 | 25 | 0 | 0 | logfile |
✔ | 7VPX | 32074 | 2024-03-24 | 2021-10-18 | 3.0 | 3.28 | — | 3.1 | 0.009 | 1.32 | 28.0 | 0.17 | 19.53 | 0.01 | 1.018 | 18.59 | 7.75 | 3.5 | 96.2 | 0.3 | -2.52 | 0.44 | 0.36 | 1.22 | 3.2 | 0.006 | 0.90 | 0.0 | 0.06 | 19.24 | 0.01 | 1.983 | 13.57 | 4.35 | 6.6 | 93.3 | 0.0 | -0.49 | 1.48 | 0.59 | 0.63 | 1.39 | 43240 | 5611 | 39 | 319 | 7 | 0 | 0 | logfile |
✘ | 6NEF | 9357 | 2024-03-21 | 2018-12-17 | 3.4 | 3.55 | — | 3.5 | 0.021 | 1.83 | 0.0 | 0.07 | 16.56 | 0.01 | 1.696 | 41.21 | 0.04 | 24.1 | 72.2 | 3.7 | -6.35 | 0.42 | 0.36 | 0.87 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 29457 | 3663 | 9 | 0 | 63 | 0 | 0 | logfile |
✔ | 7UiL | 26548 | 2024-03-23 | 2022-03-29 | 4.3 | 9.74 | 4.31 | 8.6 | 0.004 | 0.67 | 0.0 | 0.04 | 13.36 | 0.00 | 0.667 | 9.13 | 0.07 | 1.2 | 98.7 | 0.1 | 0.35 | 0.63 | 0.36 | — | 8.6 | 0.003 | 0.64 | 0.0 | 0.04 | 13.37 | 0.00 | 2.115 | 16.28 | 0.02 | 2.8 | 97.2 | 0.0 | 0.17 | 1.62 | 0.77 | 0.64 | — | 37614 | 4641 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PLQ | 20372 | 2024-03-16 | 2019-07-01 | 3.4 | 4.30 | — | 4.3 | 0.002 | 0.53 | 0.0 | 0.05 | 11.13 | 0.00 | 2.285 | 5.97 | 0.00 | 2.0 | 98.0 | 0.0 | -4.40 | 0.57 | 0.36 | 0.62 | 4.0 | 0.003 | 0.95 | 0.0 | 0.05 | 14.20 | 0.00 | 2.137 | 14.28 | 2.65 | 4.8 | 95.2 | 0.0 | -0.63 | 2.01 | 0.70 | 0.70 | 0.89 | 14240 | 1730 | 15 | 0 | 20 | 0 | 0 | logfile |
✔ | 4V91 | 2599 | 2024-03-15 | 2014-03-21 | 3.7 | 3.84 | — | 3.8 | 0.133 | 4.77 | 525.0 | 0.43 | 25.54 | 0.07 | 0.695 | 17.94 | 12.79 | 14.1 | 78.2 | 7.8 | -5.39 | 0.33 | 0.36 | 0.15 | 3.8 | 0.042 | 1.66 | 0.0 | 0.05 | 23.19 | 0.02 | 1.926 | 18.85 | 3.11 | 9.9 | 89.3 | 0.8 | -2.99 | 2.00 | 0.63 | 0.82 | 1.46 | 125665 | 6450 | 45 | 3482 | 0 | 0 | 0 | logfile |
✔ | 7NJ3 | 12371 | 2024-03-20 | 2021-02-15 | 4.48 | 4.72 | — | 4.6 | 0.004 | 0.70 | 1.0 | 0.05 | 14.40 | 0.00 | 1.907 | 8.92 | 0.38 | 4.2 | 95.8 | 0.0 | -0.73 | 0.57 | 0.36 | — | 4.6 | 0.003 | 0.66 | 0.0 | 0.04 | 14.39 | 0.00 | 1.832 | 17.23 | 0.00 | 6.0 | 94.0 | 0.0 | -1.08 | 2.77 | 0.71 | 0.61 | — | 28778 | 1795 | 6 | 23 | 0 | 0 | 13868 | logfile |
✔ | 8JoU | 36462 | 2024-03-12 | 2023-06-08 | 4.1 | 6.13 | 3.95 | 3.9 | 0.004 | 0.83 | 0.0 | 0.05 | 12.09 | 0.01 | 0.759 | 16.82 | 0.49 | 7.7 | 90.4 | 1.9 | -1.54 | 0.17 | 0.37 | — | 3.1 | 0.003 | 0.69 | 0.0 | 0.04 | 11.93 | 0.00 | 2.055 | 23.73 | 0.08 | 8.5 | 89.8 | 1.7 | -1.53 | 1.41 | 0.23 | 0.86 | — | 62425 | 8135 | 70 | 0 | 590 | 0 | 0 | logfile |
✔ | 8ENR | 28277 | 2024-03-11 | 2022-09-30 | 3.8 | 4.03 | 4.04 | 4.3 | 0.004 | 0.80 | 0.0 | 0.05 | 14.88 | 0.00 | 2.204 | 17.13 | 0.89 | 0.7 | 99.3 | 0.0 | 1.04 | 0.43 | 0.37 | 0.94 | 4.2 | 0.007 | 1.12 | 0.0 | 0.05 | 17.60 | 0.00 | 2.048 | 35.57 | 3.72 | 15.1 | 84.9 | 0.0 | -3.97 | 2.50 | 0.51 | 0.50 | 2.45 | 6392 | 888 | 8 | 0 | 0 | 0 | 0 | logfile |