Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PGQ	13392	2023-07-14	2021-08-15	3.5	3.89	3.50	3.6	0.003	0.45	0.0	0.03	10.46	0.00	1.905	3.80	0.91	1.2	98.8	0.0	-0.24	0.81	0.79	1.38	3.6	0.002	0.54	0.0	0.03	12.83	0.00	2.038	5.60	0.17	3.3	96.6	0.1	1.23	0.73	0.81	0.79	1.31	31508	1970	3	0	2	0	15807	logfile
✔	8ET7	28587	2023-07-04	2022-10-16	3.77	4.05	3.85	4.0	0.003	0.49	0.0	0.03	10.93	0.00	2.342	3.90	0.24	3.2	96.8	0.0	1.90	0.49	0.70	1.68	4.0	0.004	0.60	0.0	0.03	15.59	0.00	1.890	9.26	0.24	6.0	94.0	0.0	0.87	1.50	0.50	0.73	1.36	8111	532	3	0	3	0	4007	logfile
✔	6ZLG	11265	2023-07-15	2020-06-30	3.0	3.18	—	3.1	0.003	0.44	0.0	0.03	16.50	0.00	2.180	7.56	4.15	0.1	99.9	0.0	1.26	0.80	0.87	2.98	3.1	0.003	0.40	0.0	0.03	17.92	0.00	2.131	6.27	3.28	1.6	98.4	0.0	5.28	1.17	0.82	0.90	2.58	33008	4072	24	0	0	0	0	logfile
✔	8G88	29843	2023-07-07	2023-02-17	4.8	7.18	4.63	3.2	0.004	0.60	0.0	0.03	28.10	0.00	2.275	7.12	0.93	1.0	99.0	0.0	1.45	0.78	0.60	—	3.2	0.006	0.68	0.0	0.04	29.42	0.00	2.075	29.38	0.00	2.5	97.5	0.0	1.55	2.54	0.91	0.81	—	13995	891	11	336	0	0	0	logfile
✔	7E9C	31029	2023-07-11	2021-03-04	3.5	4.28	3.62	4.0	0.003	0.58	0.0	0.03	26.96	0.00	2.221	12.74	0.14	3.3	96.7	0.0	0.16	0.78	0.69	0.28	4.0	0.005	0.69	0.0	0.04	28.49	0.01	2.118	20.22	1.24	5.0	95.0	0.0	-0.18	1.64	0.83	0.79	0.82	12338	898	11	260	0	0	0	logfile
✔	6XMF	22257	2023-07-04	2020-06-30	3.1	3.28	—	3.3	0.002	0.56	0.0	0.03	16.46	0.00	2.246	8.60	0.00	6.8	93.2	0.0	-1.78	0.68	0.71	2.25	3.2	0.003	0.60	0.0	0.03	17.60	0.00	2.155	15.19	0.40	9.1	90.9	0.0	-0.44	0.47	0.70	0.76	2.47	7382	627	3	109	1	0	0	logfile
✔	8EXA	28656	2023-07-03	2022-10-25	3.14	3.45	3.09	3.4	0.004	0.54	0.0	0.03	17.45	0.00	2.223	15.79	0.40	3.6	96.4	0.0	0.27	0.61	0.69	4.07	3.4	0.003	0.52	0.0	0.03	17.87	0.00	2.219	16.00	1.21	3.6	96.4	0.0	0.46	1.14	0.60	0.68	3.76	5539	341	4	139	0	0	0	logfile
✔	6ENJ	3899	2023-07-21	2017-10-05	3.7	3.76	—	3.7	0.003	0.61	0.0	0.03	14.08	0.01	1.234	4.06	0.06	8.4	91.3	0.3	-4.96	0.77	0.77	1.43	3.7	0.007	0.84	0.0	0.04	16.60	0.01	2.028	18.23	1.34	12.8	86.9	0.3	-3.13	1.77	0.80	0.81	1.43	147111	5950	56	4693	0	0	0	logfile
✔	6T9L	10415	2023-07-09	2019-10-28	3.6	3.74	3.53	3.6	0.002	0.47	0.0	0.03	22.54	0.00	2.136	7.11	0.07	1.1	98.9	0.0	-1.63	0.74	0.68	0.82	3.6	0.003	0.61	0.0	0.04	24.88	0.00	2.026	8.92	0.30	2.4	97.6	0.0	1.15	0.81	0.84	0.83	1.11	18157	1532	18	290	8	0	0	logfile
✔	7Sii	25142	2023-07-10	2021-10-14	3.45	3.63	—	3.6	0.008	0.74	0.0	0.03	13.14	0.00	2.220	5.25	2.21	2.9	97.1	0.0	2.94	0.64	0.79	2.61	3.6	0.004	0.55	0.0	0.03	15.31	0.00	2.106	7.44	0.46	3.0	97.0	0.0	2.33	0.51	0.66	0.83	1.88	20484	1286	8	0	4	0	10184	logfile
✔	6V3B	21032	2023-07-16	2019-11-25	2.91	3.09	—	3.0	0.002	0.51	0.0	0.03	14.38	0.01	1.895	5.92	0.05	2.9	97.1	0.1	-1.21	0.83	0.83	2.56	3.0	0.008	0.78	0.0	0.05	16.16	0.01	1.664	7.19	3.52	5.3	94.6	0.1	-0.34	1.58	0.86	0.89	2.58	140290	5457	76	4535	95	398	0	logfile
✔	8CVi	27008	2023-07-07	2022-05-18	3.4	3.54	3.20	3.4	0.003	0.49	0.0	0.03	13.53	0.00	2.073	8.79	0.05	4.0	95.9	0.1	1.49	0.55	0.83	1.22	3.4	0.003	0.58	1.0	0.04	16.27	0.00	2.023	10.85	0.42	4.0	96.0	0.0	3.71	2.21	0.58	0.84	0.83	66030	8856	33	0	0	0	0	logfile
✔	6V39	21030	2023-07-17	2019-11-25	3.04	3.20	—	3.1	0.002	0.49	0.0	0.03	14.66	0.02	1.895	6.19	0.00	2.5	97.4	0.1	-1.02	0.86	0.85	2.53	3.1	0.003	0.62	0.0	0.03	16.06	0.01	1.821	8.08	0.56	4.2	95.7	0.1	0.18	1.17	0.87	0.88	2.71	141897	5458	70	4615	116	273	0	logfile
✔	6XMG	22258	2023-07-04	2020-06-30	4.8	8.26	—	3.9	0.002	0.53	0.0	0.03	16.06	0.00	2.187	10.77	0.00	6.7	93.3	0.0	-2.01	0.90	0.74	—	3.5	0.004	0.78	0.0	0.04	18.81	0.01	2.001	46.91	0.20	11.0	89.0	0.0	-2.08	0.78	0.90	0.78	—	8361	638	4	154	1	0	0	logfile
✔	5LY6	4118	2023-07-03	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.62	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.003	0.77	0.0	0.04	13.91	0.00	2.223	14.60	0.00	8.3	91.5	0.2	-2.31	3.59	0.40	0.76	—	3725	471	1	0	0	0	0	logfile
✔	7MVU	24056	2023-07-12	2021-05-15	3.77	4.87	3.73	4.0	0.002	0.36	0.0	0.03	6.38	0.00	2.187	3.55	0.00	1.1	98.9	0.0	-0.33	0.85	0.73	0.19	4.0	0.003	0.58	0.0	0.03	11.75	0.00	1.882	11.93	0.22	3.2	96.8	0.0	2.54	2.06	0.88	0.82	0.36	25645	1604	2	0	0	0	12841	logfile
✔	7Q2Z	13786	2023-07-04	2021-10-26	3.2	2.91	3.15	3.2	0.002	0.48	0.0	0.03	18.78	0.00	2.227	4.26	0.00	6.5	93.4	0.1	-1.44	0.67	0.80	2.05	3.2	0.003	0.54	0.0	0.03	19.97	0.00	2.121	3.33	0.00	2.8	97.1	0.1	2.11	1.23	0.70	0.86	1.84	8258	902	4	46	0	0	0	logfile
✔	7oTC	13058	2023-07-22	2021-06-10	2.9	3.10	—	3.1	0.005	0.71	1.0	0.03	13.78	0.02	1.846	9.04	0.04	3.6	96.3	0.1	-0.49	0.73	0.80	2.51	3.1	0.004	0.65	0.0	0.04	14.62	0.01	1.907	10.46	2.80	3.5	96.5	0.0	-0.30	1.17	0.78	0.86	2.50	147132	6239	64	4557	305	0	0	logfile
✔	7oQZ	13035	2023-07-04	2021-06-04	3.27	3.59	3.75	3.8	0.009	0.98	0.0	0.03	13.71	0.00	2.257	3.35	0.51	1.3	98.7	0.0	4.83	0.61	0.78	2.67	3.8	0.004	0.75	0.0	0.04	17.35	0.00	2.109	11.10	1.15	3.1	96.9	0.0	3.11	0.81	0.63	0.81	2.23	7996	948	8	0	16	0	0	logfile
✔	7o5H	12736	2023-07-16	2021-04-08	3.1	2.93	3.04	2.8	0.002	0.33	0.0	0.03	12.30	0.00	1.262	5.88	0.98	2.1	97.9	0.0	1.09	0.86	0.83	1.84	2.8	0.006	0.66	0.0	0.04	14.74	0.01	1.068	13.97	0.56	3.6	96.4	0.0	0.01	1.48	0.87	0.85	1.32	34436	1730	22	964	167	0	0	logfile

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