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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8E55 | 27903 | 2023-02-20 | 2022-08-19 | 3.85 | 4.07 | 3.34 | 4.0 | 0.007 | 0.67 | 0.0 | 0.03 | 12.36 | 0.00 | 2.252 | 3.39 | 0.50 | 2.5 | 97.5 | 0.0 | 1.17 | 0.66 | 0.60 | -0.11 | 4.0 | 0.003 | 0.55 | 0.0 | 0.03 | 16.13 | 0.00 | 2.262 | 10.49 | 0.00 | 1.8 | 98.2 | 0.0 | 4.40 | 1.43 | 0.69 | 0.70 | -0.11 | 12176 | 780 | 4 | 0 | 0 | 0 | 6104 | logfile |
✔ | 6WFQ | 21652 | 2023-02-17 | 2020-04-03 | 3.9 | 4.88 | 3.77 | 3.9 | 0.002 | 0.49 | 0.0 | 0.03 | 16.66 | 0.00 | 2.265 | 8.11 | 0.80 | 4.3 | 95.7 | 0.0 | -2.49 | 0.84 | 0.78 | 0.76 | 3.8 | 0.003 | 0.92 | 0.0 | 0.04 | 19.12 | 0.00 | 2.154 | 16.10 | 0.00 | 6.3 | 93.7 | 0.0 | -0.17 | 0.73 | 0.85 | 0.80 | 0.54 | 4164 | 447 | 4 | 30 | 0 | 0 | 0 | logfile |
✔ | 7XSM | 33427 | 2023-02-20 | 2022-05-14 | 4.01 | 4.70 | 4.03 | 4.0 | 0.002 | 0.47 | 0.0 | 0.03 | 15.76 | 0.00 | 1.969 | 7.06 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.90 | 0.75 | — | 4.0 | 0.007 | 0.76 | 0.0 | 0.04 | 19.93 | 0.01 | 1.773 | 49.65 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.70 | 0.92 | 0.82 | — | 12464 | 0 | 1 | 388 | 0 | 0 | 4165 | logfile |
✔ | 7PGQ | 13392 | 2023-02-27 | 2021-08-15 | 3.5 | 3.89 | 3.50 | 3.6 | 0.003 | 0.45 | 0.0 | 0.03 | 10.46 | 0.00 | 1.905 | 3.80 | 0.91 | 1.2 | 98.8 | 0.0 | -0.24 | 0.81 | 0.79 | 1.38 | 3.6 | 0.002 | 0.54 | 0.0 | 0.03 | 12.83 | 0.00 | 2.038 | 5.60 | 0.17 | 3.3 | 96.6 | 0.1 | 1.23 | 0.73 | 0.81 | 0.79 | 1.31 | 31508 | 1970 | 3 | 0 | 2 | 0 | 15807 | logfile |
✔ | 7E9C | 31029 | 2023-02-24 | 2021-03-04 | 3.5 | 4.28 | 3.62 | 4.0 | 0.003 | 0.58 | 0.0 | 0.03 | 26.96 | 0.00 | 2.221 | 12.74 | 0.14 | 3.3 | 96.7 | 0.0 | 0.16 | 0.78 | 0.69 | 0.28 | 4.0 | 0.005 | 0.69 | 0.0 | 0.04 | 28.49 | 0.01 | 2.118 | 20.22 | 1.24 | 5.0 | 95.0 | 0.0 | -0.18 | 1.64 | 0.83 | 0.79 | 0.82 | 12338 | 898 | 11 | 260 | 0 | 0 | 0 | logfile |
✔ | 5LY6 | 4118 | 2023-02-17 | 2016-09-24 | 4.5 | 4.72 | — | 4.3 | 0.006 | 1.24 | 0.0 | 0.03 | 24.28 | 0.02 | 1.526 | 94.62 | 36.32 | 20.9 | 74.2 | 4.9 | -5.32 | 0.34 | 0.59 | — | 4.4 | 0.004 | 0.81 | 0.0 | 0.04 | 14.05 | 0.00 | 2.184 | 19.06 | 0.00 | 10.7 | 88.9 | 0.4 | -2.62 | 2.58 | 0.40 | 0.76 | — | 3725 | 471 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6XMG | 22258 | 2023-02-18 | 2020-06-30 | 4.8 | 8.26 | — | 3.9 | 0.002 | 0.53 | 0.0 | 0.03 | 16.06 | 0.00 | 2.187 | 10.77 | 0.00 | 6.7 | 93.3 | 0.0 | -2.01 | 0.90 | 0.74 | — | 3.5 | 0.004 | 0.78 | 0.0 | 0.04 | 18.81 | 0.01 | 2.001 | 46.91 | 0.20 | 11.0 | 89.0 | 0.0 | -2.08 | 0.78 | 0.90 | 0.78 | — | 8361 | 638 | 4 | 154 | 1 | 0 | 0 | logfile |
✔ | 7oQZ | 13035 | 2023-02-18 | 2021-06-04 | 3.27 | 3.59 | 3.75 | 3.8 | 0.009 | 0.98 | 0.0 | 0.03 | 13.71 | 0.00 | 2.257 | 3.35 | 0.51 | 1.3 | 98.7 | 0.0 | 4.83 | 0.61 | 0.78 | 2.67 | 3.8 | 0.004 | 0.75 | 0.0 | 0.04 | 17.35 | 0.00 | 2.109 | 11.10 | 1.15 | 3.1 | 96.9 | 0.0 | 3.11 | 0.81 | 0.63 | 0.81 | 2.23 | 7996 | 948 | 8 | 0 | 16 | 0 | 0 | logfile |
✔ | 6XMF | 22257 | 2023-02-18 | 2020-06-30 | 3.1 | 3.28 | — | 3.3 | 0.002 | 0.56 | 0.0 | 0.03 | 16.46 | 0.00 | 2.246 | 8.60 | 0.00 | 6.8 | 93.2 | 0.0 | -1.78 | 0.68 | 0.71 | 2.25 | 3.2 | 0.003 | 0.60 | 0.0 | 0.03 | 17.60 | 0.00 | 2.155 | 15.19 | 0.40 | 9.1 | 90.9 | 0.0 | -0.44 | 0.47 | 0.70 | 0.76 | 2.47 | 7382 | 627 | 3 | 109 | 1 | 0 | 0 | logfile |
✔ | 7Sii | 25142 | 2023-02-23 | 2021-10-14 | 3.45 | 3.63 | — | 3.6 | 0.008 | 0.74 | 0.0 | 0.03 | 13.14 | 0.00 | 2.220 | 5.25 | 2.21 | 2.9 | 97.1 | 0.0 | 2.94 | 0.64 | 0.79 | 2.61 | 3.6 | 0.004 | 0.55 | 0.0 | 0.03 | 15.31 | 0.00 | 2.106 | 7.44 | 0.46 | 3.0 | 97.0 | 0.0 | 2.33 | 0.51 | 0.66 | 0.83 | 1.88 | 20484 | 1286 | 8 | 0 | 4 | 0 | 10184 | logfile |
✔ | 6T9L | 10415 | 2023-02-22 | 2019-10-28 | 3.6 | 3.74 | 3.53 | 3.6 | 0.002 | 0.47 | 0.0 | 0.03 | 22.54 | 0.00 | 2.136 | 7.11 | 0.07 | 1.1 | 98.9 | 0.0 | -1.63 | 0.74 | 0.68 | 0.82 | 3.6 | 0.005 | 0.68 | 0.0 | 0.04 | 25.18 | 0.00 | 1.945 | 9.77 | 0.37 | 3.5 | 96.5 | 0.0 | 0.77 | 0.84 | 0.84 | 0.84 | 1.37 | 18157 | 1532 | 18 | 290 | 8 | 0 | 0 | logfile |
✔ | 7Q2Z | 13786 | 2023-02-18 | 2021-10-26 | 3.2 | 2.91 | 3.15 | 3.2 | 0.002 | 0.48 | 0.0 | 0.03 | 18.78 | 0.00 | 2.227 | 4.26 | 0.00 | 6.5 | 93.4 | 0.1 | -1.44 | 0.67 | 0.80 | 2.05 | 3.2 | 0.003 | 0.54 | 0.0 | 0.03 | 19.97 | 0.00 | 2.121 | 3.33 | 0.00 | 2.8 | 97.1 | 0.1 | 2.11 | 1.23 | 0.70 | 0.86 | 1.84 | 8258 | 902 | 4 | 46 | 0 | 0 | 0 | logfile |
✔ | 6K3o | 9910 | 2023-02-27 | 2019-05-21 | 3.4 | 3.86 | — | 3.8 | 0.003 | 0.56 | 0.0 | 0.03 | 14.46 | 0.00 | 1.077 | 16.09 | 0.00 | 3.8 | 96.2 | 0.0 | -1.52 | 0.79 | 0.82 | 3.15 | 3.8 | 0.004 | 0.69 | 0.0 | 0.03 | 17.15 | 0.00 | 2.027 | 6.25 | 0.66 | 2.0 | 98.0 | 0.0 | 4.00 | 0.49 | 0.77 | 0.81 | 2.57 | 31508 | 3790 | 48 | 0 | 36 | 0 | 0 | logfile |
✔ | 7XQG | 33395 | 2023-02-19 | 2022-05-07 | 3.8 | 4.58 | 3.85 | 4.2 | 0.002 | 0.46 | 0.0 | 0.03 | 11.19 | 0.00 | 2.268 | 4.64 | 5.00 | 1.5 | 98.0 | 0.5 | 2.98 | 0.79 | 0.85 | 2.01 | 4.2 | 0.003 | 0.78 | 0.0 | 0.04 | 15.05 | 0.00 | 2.291 | 8.32 | 0.19 | 3.6 | 96.4 | 0.0 | 2.37 | 0.77 | 0.80 | 0.85 | 1.40 | 10206 | 1206 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 7MVV | 24057 | 2023-02-25 | 2021-05-15 | 3.22 | 4.20 | 3.24 | 3.5 | 0.002 | 0.36 | 0.0 | 0.03 | 6.43 | 0.00 | 2.161 | 3.07 | 0.07 | 1.3 | 98.7 | 0.0 | -0.66 | 0.88 | 0.76 | 0.50 | 3.6 | 0.002 | 0.53 | 0.0 | 0.03 | 10.98 | 0.00 | 2.021 | 7.18 | 0.07 | 3.0 | 97.0 | 0.0 | 2.84 | 0.96 | 0.89 | 0.82 | 1.13 | 25764 | 1609 | 4 | 0 | 0 | 0 | 12907 | logfile |
✔ | 7QEY | 13944 | 2023-02-19 | 2021-12-03 | 2.0 | 2.46 | — | 2.2 | 0.009 | 0.57 | 0.0 | 0.03 | 10.74 | 0.00 | 2.199 | 3.57 | 2.35 | 1.7 | 98.3 | 0.0 | 1.74 | 0.77 | 0.90 | 5.27 | 2.1 | 0.004 | 0.68 | 0.0 | 0.04 | 13.34 | 0.00 | 2.160 | 4.49 | 1.12 | 2.3 | 97.7 | 0.0 | 3.13 | 0.56 | 0.78 | 0.93 | 4.39 | 9467 | 1092 | 18 | 0 | 30 | 281 | 0 | logfile |
✔ | 7MVU | 24056 | 2023-02-25 | 2021-05-15 | 3.77 | 4.87 | 3.73 | 4.0 | 0.002 | 0.36 | 0.0 | 0.03 | 6.38 | 0.00 | 2.187 | 3.55 | 0.00 | 1.1 | 98.9 | 0.0 | -0.33 | 0.85 | 0.73 | 0.19 | 4.0 | 0.003 | 0.58 | 0.0 | 0.03 | 11.75 | 0.00 | 1.882 | 11.93 | 0.22 | 3.2 | 96.8 | 0.0 | 2.54 | 2.06 | 0.88 | 0.82 | 0.36 | 25645 | 1604 | 2 | 0 | 0 | 0 | 12841 | logfile |
✔ | 7WB0 | 32391 | 2023-02-19 | 2021-12-15 | 3.2 | 3.52 | — | 3.3 | 0.003 | 0.58 | 0.0 | 0.03 | 18.37 | 0.00 | 2.136 | 7.20 | 0.00 | 3.3 | 96.6 | 0.1 | 0.54 | 0.70 | 0.73 | 1.78 | 3.3 | 0.003 | 0.58 | 0.0 | 0.03 | 19.27 | 0.00 | 2.184 | 8.33 | 0.00 | 4.3 | 95.6 | 0.1 | 0.39 | 1.06 | 0.71 | 0.77 | 1.00 | 10096 | 797 | 4 | 175 | 0 | 0 | 0 | logfile |
✔ | 7oN1 | 12993 | 2023-02-20 | 2021-05-25 | 3.35 | 3.18 | — | 3.4 | 0.002 | 0.47 | 0.0 | 0.03 | 26.28 | 0.00 | 2.120 | 6.38 | 0.00 | 1.5 | 98.5 | 0.0 | -0.25 | 0.82 | 0.83 | 1.11 | 3.4 | 0.004 | 0.56 | 0.0 | 0.03 | 27.34 | 0.00 | 2.084 | 6.23 | 0.31 | 3.4 | 96.6 | 0.0 | 2.50 | 1.33 | 0.84 | 0.90 | 1.58 | 11150 | 777 | 12 | 246 | 0 | 0 | 0 | logfile |
✔ | 7ZiR | 14738 | 2023-02-16 | 2022-04-08 | 2.5 | 2.51 | 2.04 | 2.7 | 0.002 | 0.34 | 0.0 | 0.03 | 9.02 | 0.00 | 2.317 | 1.65 | 0.00 | 2.0 | 98.0 | 0.0 | -3.82 | 0.48 | 0.90 | 7.46 | 2.7 | 0.003 | 0.46 | 0.0 | 0.04 | 12.12 | 0.00 | 2.316 | 0.28 | 0.00 | 2.9 | 97.1 | 0.0 | -3.83 | 1.03 | 0.50 | 0.93 | 7.96 | 2120 | 255 | 10 | 0 | 0 | 50 | 0 | logfile |