Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6GBZ	4378	2022-12-16	2018-04-16	3.8	4.02	—	3.9	0.002	0.61	0.0	0.03	13.32	0.00	2.235	2.87	0.08	6.2	93.4	0.3	-4.24	0.72	0.67	1.01	3.9	0.005	0.72	0.0	0.04	15.83	0.01	1.983	19.65	1.04	10.8	89.1	0.1	-2.14	0.88	0.78	0.77	1.03	86401	3074	29	2908	0	0	0	logfile
✔	6GC4	4380	2022-12-15	2018-04-17	4.3	4.54	—	4.3	0.003	0.77	0.0	0.03	13.73	0.01	2.252	4.16	0.39	6.9	92.9	0.2	-3.77	0.70	0.60	—	4.3	0.007	0.79	0.0	0.04	15.51	0.01	1.989	26.90	0.04	11.4	88.5	0.1	-2.30	0.97	0.81	0.79	—	80165	2836	26	2705	0	0	0	logfile
✔	7BL3	12216	2022-12-16	2021-01-18	3.5	3.69	—	3.5	0.002	0.48	0.0	0.03	14.11	0.00	2.089	12.48	0.03	6.4	93.6	0.0	-1.33	0.75	0.79	1.02	3.5	0.004	0.63	0.0	0.04	15.54	0.00	1.991	17.00	0.68	8.6	91.4	0.0	-1.72	0.59	0.76	0.82	1.25	92831	3612	39	3021	2	27	0	logfile
✔	6ZLG	11265	2022-12-18	2020-06-30	3.0	3.18	—	3.1	0.003	0.44	0.0	0.03	16.50	0.00	2.180	7.56	4.15	0.1	99.9	0.0	1.26	0.80	0.87	2.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	33008	4072	24	0	0	0	0	logfile
✔	7FHL	31586	2022-12-13	2021-07-29	3.1	3.71	—	3.6	0.002	0.55	0.0	0.03	12.50	0.00	2.150	6.83	0.00	1.2	98.8	0.0	1.13	0.70	0.81	1.99	3.6	0.003	0.58	0.0	0.04	14.73	0.00	2.130	8.74	0.34	2.1	97.9	0.0	2.16	0.46	0.69	0.82	1.72	11058	1326	6	0	28	0	0	logfile
✔	6W7N	21572	2022-12-21	2020-03-19	3.4	3.72	—	3.6	0.002	0.46	0.0	0.03	14.05	0.00	1.907	8.15	0.08	8.2	91.5	0.3	-4.03	0.78	0.78	1.44	3.6	0.005	0.64	0.0	0.03	15.40	0.00	2.136	11.29	0.69	11.6	88.1	0.3	-2.05	1.23	0.81	0.83	1.49	42287	1660	15	1372	0	0	0	logfile
✔	6W77	21569	2022-12-22	2020-03-18	3.6	3.44	—	3.3	0.002	0.53	0.0	0.03	14.96	0.00	2.084	9.36	0.12	6.1	93.7	0.2	-3.22	0.73	0.67	0.91	3.3	0.006	0.86	0.0	0.04	16.81	0.01	1.852	18.02	0.87	12.2	87.6	0.2	-2.34	2.05	0.76	0.71	1.02	47940	1949	18	1519	0	0	0	logfile
✔	6W7M	21571	2022-12-22	2020-03-19	3.8	3.72	—	3.6	0.002	0.58	0.0	0.03	16.56	0.00	2.031	14.83	0.10	7.4	92.3	0.3	-3.67	0.68	0.56	0.12	3.6	0.003	0.74	0.0	0.04	18.06	0.01	2.049	23.10	0.89	11.3	88.5	0.3	-2.41	1.33	0.71	0.61	0.43	50694	2319	20	1512	0	0	0	logfile
✔	7JGG	22326	2022-12-11	2020-07-19	4.88	8.00	—	7.7	0.002	0.46	0.0	0.03	13.22	0.00	1.988	54.49	0.00	3.3	96.5	0.2	1.67	0.66	0.64	—	7.6	0.003	0.54	0.0	0.03	12.79	0.00	1.898	99.07	0.00	5.9	94.1	0.0	0.89	1.75	0.67	0.71	—	4210	506	1	0	0	0	28	logfile
✔	6W7W	21573	2022-12-15	2020-03-19	3.9	4.46	—	4.0	0.002	0.49	0.0	0.03	15.50	0.00	2.156	10.72	0.12	4.1	95.9	0.0	-2.82	0.91	0.83	1.20	4.0	0.007	0.80	0.0	0.04	16.98	0.01	2.085	26.98	0.47	8.0	92.0	0.0	-1.57	0.61	0.92	0.85	1.34	26883	1047	10	871	0	0	0	logfile
✔	6W6K	21558	2022-12-22	2020-03-17	3.6	3.84	—	3.7	0.002	0.47	0.0	0.03	14.66	0.00	2.113	10.39	0.00	6.9	93.1	0.0	-4.28	0.70	0.59	0.52	3.7	0.004	0.81	0.0	0.04	17.50	0.01	2.010	22.80	1.18	14.2	85.8	0.1	-3.32	1.40	0.75	0.67	0.42	46934	1873	19	1534	1	0	0	logfile
✔	6WFQ	21652	2022-12-11	2020-04-03	3.9	4.88	3.77	3.9	0.002	0.49	0.0	0.03	16.66	0.00	2.265	8.11	0.80	4.3	95.7	0.0	-2.49	0.84	0.78	0.76	3.8	0.004	0.87	0.0	0.04	19.04	0.00	2.205	19.35	0.80	6.5	93.5	0.0	-0.24	0.73	0.85	0.80	0.76	4164	447	4	30	0	0	0	logfile
✔	6XMG	22258	2022-12-12	2020-06-30	4.8	8.26	—	3.9	0.002	0.53	0.0	0.03	16.06	0.00	2.187	10.84	0.00	6.7	93.3	0.0	-2.01	0.90	0.74	—	3.4	0.005	0.88	0.0	0.04	19.20	0.01	1.956	53.80	0.20	12.6	87.4	0.0	-2.59	1.34	0.90	0.78	—	8361	638	4	154	1	0	0	logfile
✔	7DBP	30161	2022-12-13	2020-10-21	4.5	5.32	—	4.3	0.003	0.45	0.0	0.03	27.36	0.00	2.226	8.54	0.57	4.4	94.9	0.7	-0.94	0.87	0.76	—	4.3	0.004	0.62	0.0	0.03	30.17	0.00	2.173	21.76	0.00	3.2	96.8	0.0	1.12	2.51	0.90	0.74	—	13801	837	11	350	0	0	0	logfile
✔	6XMF	22257	2022-12-11	2020-06-30	3.1	3.28	—	3.3	0.002	0.56	0.0	0.03	16.46	0.00	2.246	8.82	0.00	6.8	93.2	0.0	-1.78	0.68	0.71	2.25	3.2	0.003	0.61	0.0	0.03	17.63	0.00	2.152	15.34	0.60	9.3	90.7	0.0	-0.42	0.47	0.72	0.77	2.82	7382	627	3	109	1	0	0	logfile
✘	6X36	22019	2022-12-19	2020-05-21	4.7	4.72	5.52	4.6	0.002	0.53	0.0	0.03	10.40	0.00	2.228	5.93	0.00	2.2	97.8	0.0	0.96	0.76	0.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	100164	13692	12	0	1376	0	0	logfile
✔	6PC6	20297	2022-12-14	2019-06-16	2.5	3.08	—	2.9	0.008	0.50	0.0	0.03	12.75	0.02	1.930	2.96	2.11	6.3	93.7	0.0	-3.58	0.73	0.88	4.50	2.9	0.004	0.63	0.0	0.03	14.58	0.01	1.976	7.98	3.42	6.7	93.1	0.2	-0.78	0.91	0.74	0.90	4.21	72127	963	8	3015	1	0	0	logfile
✔	7A8P	11679	2022-12-11	2020-08-30	3.5	3.61	3.44	3.6	0.004	0.52	0.0	0.03	16.07	0.00	2.165	2.86	0.63	2.2	97.8	0.0	0.97	0.73	0.78	1.97	3.5	0.003	0.58	0.0	0.04	16.93	0.00	2.087	8.87	0.25	2.1	97.9	0.0	2.59	0.48	0.74	0.79	2.03	7305	911	1	0	1	0	0	logfile
✔	6K3o	9910	2022-12-16	2019-05-21	3.4	3.86	—	3.8	0.003	0.56	0.0	0.03	14.46	0.00	1.077	16.09	0.00	3.8	96.2	0.0	-1.52	0.79	0.82	3.15	3.8	0.004	0.73	0.0	0.03	17.05	0.00	1.627	5.96	0.75	2.1	97.9	0.0	3.83	0.50	0.76	0.81	2.46	31508	3790	48	0	36	0	0	logfile
✔	5LY6	4118	2022-12-11	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.62	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.004	0.81	0.0	0.04	13.96	0.00	2.167	15.68	0.24	10.2	89.3	0.4	-2.62	3.61	0.40	0.77	—	3725	471	1	0	0	0	0	logfile

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