Table showing results for September 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WCB	21605	2021-09-03	2020-03-30	3.17	3.17	—	3.2	0.005	0.41	0.0	0.03	13.87	0.00	2.128	2.50	1.29	0.8	99.2	0.0	0.58	0.55	0.77	2.89	3.2	0.002	0.47	0.0	0.03	15.68	0.00	2.040	3.62	0.00	1.5	98.5	0.0	3.79	1.32	0.56	0.79	2.12	11647	734	6	0	7	40	5904	logfile
✔	7oDS	12846	2021-09-02	2021-04-30	3.1	3.32	—	3.1	0.002	0.40	0.0	0.03	11.15	0.02	2.009	5.00	0.51	1.2	98.8	0.0	0.91	0.78	0.76	2.42	3.1	0.005	0.77	0.0	0.04	14.89	0.01	1.469	12.32	0.12	3.1	96.9	0.0	0.58	1.70	0.79	0.79	2.14	108339	9371	67	1487	132	0	0	logfile
✔	6XMF	22257	2021-09-02	2020-06-30	3.1	3.28	—	3.3	0.002	0.56	0.0	0.03	16.46	0.00	2.246	8.52	0.00	6.8	93.2	0.0	-1.78	0.68	0.71	2.25	3.2	0.003	0.61	0.0	0.03	17.51	0.00	2.151	14.52	0.20	9.8	90.2	0.0	-0.59	1.15	0.72	0.76	3.01	7382	627	3	109	1	0	0	logfile
✘	6PC7	20298	2021-09-04	2019-06-16	2.5	3.01	—	2.9	0.006	0.50	0.0	0.03	12.79	0.02	1.954	2.83	2.23	6.2	93.7	0.1	-3.93	0.66	0.85	3.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72146	964	8	3015	1	0	0	logfile
✔	6ZoJ	11320	2021-09-05	2020-07-07	2.8	3.07	—	3.0	0.002	0.51	0.0	0.03	14.31	0.00	1.694	4.34	1.39	2.3	97.7	0.0	0.76	0.80	0.85	3.50	2.9	0.005	0.62	0.0	0.04	15.98	0.00	1.225	5.53	2.45	3.1	96.9	0.0	0.68	2.45	0.82	0.88	3.33	75783	4914	45	1704	169	0	0	logfile
✔	6PCT	20307	2021-09-04	2019-06-18	2.8	3.01	—	2.9	0.006	0.52	2.0	0.03	12.86	0.02	1.891	2.94	2.50	6.3	93.6	0.1	-3.70	0.66	0.85	4.28	2.9	0.004	0.61	0.0	0.03	14.66	0.01	2.024	8.26	3.29	6.0	93.9	0.1	-0.89	1.25	0.68	0.88	4.19	72198	964	8	3015	1	0	0	logfile
✔	7A8P	11679	2021-09-02	2020-08-30	3.5	3.61	3.44	3.6	0.004	0.52	0.0	0.03	16.07	0.00	2.165	2.80	0.63	2.2	97.8	0.0	0.97	0.73	0.78	1.97	3.5	0.015	1.15	0.0	0.04	17.03	0.01	2.067	9.68	0.00	2.3	97.7	0.0	2.47	0.52	0.74	0.80	1.92	7305	911	1	0	1	0	0	logfile
✔	6L54	0837	2021-09-04	2019-10-22	3.43	3.58	—	3.5	0.002	0.49	0.0	0.03	7.60	0.00	1.978	60.56	0.79	8.8	91.2	0.0	-3.87	0.77	0.72	1.74	3.5	0.005	0.68	0.0	0.04	13.84	0.01	1.961	65.42	0.25	10.0	89.9	0.0	-1.01	0.77	0.80	0.78	1.59	20387	2608	3	0	2	0	857	logfile
✔	6VLZ	21233	2021-09-04	2020-01-27	2.97	3.50	—	3.3	0.005	0.52	1.0	0.03	12.31	0.00	1.115	7.44	0.89	10.8	87.5	1.7	-2.83	0.70	0.61	1.27	3.3	0.008	0.88	1.0	0.04	16.24	0.01	1.508	15.25	2.48	7.1	92.7	0.2	-0.77	1.51	0.80	0.83	1.86	174849	14904	107	2561	243	0	0	logfile
✔	6NTS	0510	2021-09-03	2019-01-30	3.63	4.31	3.00	3.6	0.016	0.51	0.0	0.03	13.21	0.00	1.917	1.91	0.00	3.8	96.2	0.0	-2.08	0.89	0.77	0.59	3.7	0.003	0.64	0.0	0.04	14.98	0.00	0.999	7.88	0.18	2.8	97.2	0.0	0.80	2.33	0.92	0.85	1.21	9956	1240	5	0	3	0	0	logfile
✘	6NUD	0516	2021-09-04	2019-01-31	3.5	3.80	—	3.7	0.002	0.43	0.0	0.03	11.76	0.00	2.290	4.84	0.29	15.0	83.5	1.5	-5.22	0.53	0.46	0.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20831	2420	13	68	1	0	0	logfile
✔	6ZoK	11321	2021-09-06	2020-07-07	2.8	2.96	2.77	2.9	0.003	0.52	0.0	0.03	14.36	0.00	1.989	4.02	1.48	2.2	97.8	0.0	0.55	0.74	0.86	4.30	2.9	0.008	0.74	0.0	0.05	16.18	0.01	1.823	4.35	2.89	3.2	96.8	0.0	0.29	1.57	0.77	0.91	4.01	50192	2970	26	1232	110	0	0	logfile
✔	6SiH	10210	2021-09-06	2019-08-09	4.7	5.01	—	4.7	0.005	0.54	0.0	0.03	12.61	0.00	1.931	8.36	0.00	5.9	94.1	0.0	-1.62	0.89	0.79	—	4.7	0.002	0.61	0.0	0.04	13.41	0.00	2.075	12.23	0.00	4.7	95.3	0.0	1.11	1.59	0.88	0.78	—	37310	4880	10	0	0	0	0	logfile
✔	6PC8	20299	2021-09-04	2019-06-16	2.9	3.26	—	3.1	0.006	0.48	0.0	0.03	12.75	0.02	1.931	3.23	2.62	7.2	92.7	0.1	-4.11	0.71	0.86	3.45	3.1	0.004	0.62	0.0	0.03	14.83	0.01	2.112	9.57	3.27	7.3	92.6	0.1	-1.60	1.26	0.73	0.88	3.30	72169	967	8	3015	1	0	0	logfile
✔	6WQQ	21873	2021-09-05	2020-04-29	3.1	2.53	3.04	3.0	0.002	0.45	2.0	0.03	14.51	0.00	2.203	3.53	0.36	3.9	96.1	0.0	-4.07	0.73	0.80	2.74	3.0	0.005	0.72	0.0	0.04	16.54	0.01	1.968	5.66	0.45	6.6	93.4	0.0	-2.94	1.18	0.75	0.82	2.67	81134	2671	28	2809	1	0	0	logfile
✔	6YDW	10779	2021-09-05	2020-03-21	4.2	4.28	4.21	4.2	0.002	0.47	0.0	0.03	13.31	0.00	1.232	8.45	1.90	3.4	96.6	0.0	-1.95	0.72	0.75	—	4.2	0.004	0.73	1.0	0.04	15.61	0.01	1.199	16.21	0.05	5.3	94.7	0.0	-0.42	1.68	0.74	0.78	—	180836	15161	124	2719	337	5	0	logfile
✔	6PC6	20297	2021-09-04	2019-06-16	2.5	3.08	—	2.9	0.008	0.50	0.0	0.03	12.75	0.02	1.930	2.89	2.11	6.3	93.7	0.0	-3.58	0.73	0.88	4.50	2.9	0.005	0.66	0.0	0.04	14.68	0.01	2.081	7.84	3.29	6.5	93.3	0.2	-0.96	0.91	0.74	0.90	4.25	72127	963	8	3015	1	0	0	logfile
✔	6VWN	21422	2021-09-06	2020-02-20	3.4	3.71	—	3.2	0.002	0.58	0.0	0.03	14.91	0.00	1.951	7.11	3.85	4.3	95.7	0.0	-3.14	0.83	0.82	1.13	3.2	0.003	0.60	0.0	0.03	16.23	0.00	1.937	15.39	0.53	6.2	93.8	0.0	-1.13	1.28	0.84	0.86	1.03	140036	5341	57	4580	55	0	0	logfile
✔	6WQN	21872	2021-09-05	2020-04-29	2.9	2.43	2.85	2.8	0.003	0.50	3.0	0.03	14.74	0.00	1.951	9.01	2.31	2.9	97.1	0.0	-3.39	0.75	0.85	3.70	2.8	0.006	0.85	0.0	0.05	16.99	0.01	2.041	4.78	6.48	5.9	94.1	0.0	-2.44	0.37	0.77	0.88	3.50	80700	2646	28	2798	1	0	0	logfile
✔	3J9W	6306	2021-09-05	2015-03-16	3.9	3.93	—	3.8	0.010	1.50	0.0	0.03	15.63	0.02	1.433	8.82	0.26	6.0	92.0	2.0	-1.66	0.74	0.72	0.72	3.8	0.005	0.73	1.0	0.04	17.70	0.00	2.068	17.45	1.13	7.2	92.2	0.6	-0.59	1.79	0.80	0.84	1.11	135425	5661	54	4675	0	0	0	logfile

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