Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6W6K	21558	2022-07-07	2020-03-17	3.6	3.84	—	3.7	0.002	0.47	0.0	0.03	14.66	0.00	2.113	10.39	0.00	6.9	93.1	0.0	-4.28	0.70	0.59	0.52	3.7	0.007	0.92	1.0	0.04	17.11	0.01	1.510	21.81	0.44	12.4	87.6	0.1	-3.12	0.82	0.74	0.67	0.42	46934	1873	19	1534	1	0	0	logfile
✔	6Z5L	11079	2022-07-11	2020-05-26	3.8	4.08	—	3.9	0.004	0.63	0.0	0.03	15.41	0.00	1.986	3.72	0.00	5.2	94.8	0.0	1.60	0.53	0.68	0.31	3.9	0.003	0.73	0.0	0.04	17.26	0.00	2.171	14.13	0.12	4.0	96.0	0.0	2.44	1.28	0.58	0.85	0.94	154880	20080	80	0	0	0	0	logfile
✔	6ZoJ	11320	2022-07-05	2020-07-07	2.8	3.07	—	3.0	0.002	0.51	0.0	0.03	14.31	0.00	1.694	4.49	1.39	2.3	97.7	0.0	0.76	0.80	0.85	3.50	2.9	0.007	0.69	0.0	0.04	16.02	0.01	1.068	5.53	2.64	3.5	96.5	0.0	0.48	2.45	0.81	0.87	3.31	75783	4914	45	1704	169	0	0	logfile
✔	6ERi	3941	2022-07-07	2017-10-18	3.0	3.06	3.00	3.0	0.003	0.45	0.0	0.03	11.66	0.00	1.251	2.54	0.00	4.3	95.7	0.0	-3.80	0.66	0.74	2.70	3.0	0.006	0.68	0.0	0.04	14.87	0.01	1.782	8.17	3.50	5.4	94.6	0.0	-0.83	1.22	0.83	0.85	2.55	145026	6178	66	4401	515	0	0	logfile
✘	6V3B	21032	2022-07-07	2019-11-25	2.91	3.09	—	3.0	0.003	0.50	0.0	0.03	14.31	0.00	1.183	5.96	0.05	2.9	97.1	0.1	-1.21	0.83	0.83	2.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	140290	5457	76	4535	95	398	0	logfile
✘	6PC7	20298	2022-07-04	2019-06-16	2.5	3.01	—	2.9	0.003	0.36	0.0	0.03	12.58	0.00	1.214	2.86	2.23	6.2	93.7	0.1	-3.93	0.66	0.85	3.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72146	964	8	3015	1	0	0	logfile
✘	6L3V	0827	2022-07-04	2019-10-15	2.63	2.90	2.72	2.9	0.005	0.71	0.0	0.03	14.94	0.01	1.386	1.00	5.45	0.5	99.5	0.0	-5.00	0.57	0.85	3.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19416	1206	12	0	6	0	9528	logfile
✔	6L54	0837	2022-07-05	2019-10-22	3.43	3.58	—	3.5	0.002	0.49	0.0	0.03	7.60	0.00	1.978	61.74	0.79	8.8	91.2	0.0	-3.87	0.77	0.72	1.74	3.5	0.011	0.97	0.0	0.04	14.18	0.01	1.792	71.56	0.25	12.8	87.2	0.0	-2.18	0.75	0.81	0.78	2.03	20387	2608	3	0	2	0	857	logfile
✘	6PCT	20307	2022-07-04	2019-06-18	2.8	3.01	—	2.9	0.003	0.37	2.0	0.03	12.58	0.00	1.213	2.99	2.50	6.3	93.6	0.1	-3.70	0.66	0.85	4.28	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	72198	964	8	3015	1	0	0	logfile
✔	6ZoK	11321	2022-07-08	2020-07-07	2.8	2.96	2.77	2.9	0.003	0.52	0.0	0.03	14.36	0.00	1.989	4.11	1.48	2.2	97.8	0.0	0.55	0.74	0.86	4.30	2.9	0.007	0.68	0.0	0.04	16.03	0.01	1.814	4.24	2.85	2.9	97.1	0.0	0.44	1.56	0.75	0.88	4.00	50192	2970	26	1232	110	0	0	logfile
✘	6NTS	0510	2022-07-03	2019-01-30	3.63	4.31	3.00	3.6	0.015	0.45	0.0	0.03	12.95	0.00	1.293	2.11	0.00	3.8	96.2	0.0	-2.08	0.89	0.77	0.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9956	1240	5	0	3	0	0	logfile
✔	6SiH	10210	2022-07-07	2019-08-09	4.7	5.01	—	4.7	0.005	0.54	0.0	0.03	12.61	0.00	1.931	8.52	0.00	5.9	94.1	0.0	-1.62	0.89	0.79	—	4.7	0.002	0.58	0.0	0.04	13.41	0.00	2.088	10.17	0.00	5.0	95.0	0.0	0.95	1.58	0.90	0.82	—	37310	4880	10	0	0	0	0	logfile
✘	6V39	21030	2022-07-07	2019-11-25	3.04	3.20	—	3.1	0.003	0.48	0.0	0.03	14.58	0.00	1.179	6.23	0.00	2.5	97.4	0.1	-1.02	0.86	0.85	2.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	141897	5458	70	4615	116	273	0	logfile
✔	6WQQ	21873	2022-07-05	2020-04-29	3.1	2.53	3.04	3.0	0.002	0.45	2.0	0.03	14.51	0.00	2.203	3.56	0.36	3.9	96.1	0.0	-4.07	0.73	0.80	2.74	3.0	0.003	0.62	0.0	0.04	16.34	0.01	2.008	5.61	0.45	5.9	94.1	0.0	-2.84	1.18	0.74	0.81	2.67	81134	2671	28	2809	1	0	0	logfile
✘	6V3D	21033	2022-07-05	2019-11-25	2.95	3.39	—	3.2	0.003	0.47	0.0	0.03	14.43	0.00	1.182	5.99	0.04	2.8	97.1	0.1	-1.93	0.85	0.86	2.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	89040	3117	45	3007	108	231	0	logfile
✔	6WCB	21605	2022-07-03	2020-03-30	3.17	3.17	—	3.2	0.005	0.41	0.0	0.03	13.87	0.00	2.128	2.50	1.29	0.8	99.2	0.0	0.58	0.55	0.77	2.89	3.2	0.003	0.49	0.0	0.04	15.56	0.00	2.085	4.05	0.16	1.7	98.3	0.0	3.29	1.29	0.55	0.79	2.44	11647	734	6	0	7	40	5904	logfile
✘	6WQN	21872	2022-07-05	2020-04-29	2.9	2.43	2.85	2.8	0.003	0.49	3.0	0.03	14.72	0.00	1.184	9.08	2.31	2.9	97.1	0.0	-3.39	0.75	0.85	3.70	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	80700	2646	28	2798	1	0	0	logfile
✔	6WCC	21606	2022-07-03	2020-03-30	3.24	3.27	—	3.3	0.003	0.51	0.0	0.03	15.73	0.00	2.025	4.39	2.26	0.8	99.2	0.0	1.46	0.53	0.76	1.58	3.3	0.003	0.52	0.0	0.03	15.73	0.00	2.212	7.06	0.32	2.6	97.4	0.0	4.20	0.73	0.52	0.78	1.78	11629	734	6	0	5	12	5908	logfile
✔	6NF8	9362	2022-07-04	2018-12-19	3.48	3.99	—	3.6	0.001	0.39	0.0	0.03	12.76	0.00	1.916	3.14	0.58	10.4	88.3	1.3	-2.53	0.76	0.60	1.16	3.5	0.003	0.67	0.0	0.04	15.68	0.00	2.019	12.91	0.19	5.5	94.5	0.0	-0.34	2.59	0.84	0.79	1.23	65776	5509	32	952	147	0	0	logfile
✔	6NEQ	9358	2022-07-04	2018-12-18	3.32	3.85	—	3.5	0.001	0.37	0.0	0.03	12.81	0.00	1.949	3.35	0.35	10.3	88.1	1.6	-2.42	0.69	0.51	0.07	3.5	0.004	0.68	0.0	0.04	16.24	0.01	2.099	13.08	0.35	5.3	94.6	0.1	-0.32	1.93	0.84	0.84	1.44	65776	5509	32	952	147	0	0	logfile

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