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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8BY2 | 16319 | 2024-03-17 | 2022-12-11 | 3.18 | 3.61 | 3.24 | 3.6 | 0.003 | 0.54 | 0.0 | 0.03 | 19.61 | 0.00 | 2.211 | 4.78 | 0.00 | 5.0 | 95.0 | 0.0 | 1.83 | 0.62 | 0.83 | 0.69 | 3.6 | 0.002 | 0.53 | 0.0 | 0.03 | 18.80 | 0.00 | 2.199 | 6.21 | 2.30 | 5.1 | 94.9 | 0.0 | 1.16 | 0.26 | 0.59 | 0.82 | 0.67 | 17356 | 1094 | 4 | 0 | 8 | 0 | 8802 | logfile |
✔ | 6ENJ | 3899 | 2024-03-23 | 2017-10-05 | 3.7 | 3.76 | — | 3.7 | 0.003 | 0.61 | 0.0 | 0.03 | 22.59 | 0.01 | 1.234 | 4.06 | 0.06 | 8.4 | 91.3 | 0.3 | -4.96 | 0.77 | 0.77 | 1.43 | 3.7 | 0.006 | 0.76 | 3.0 | 0.04 | 23.11 | 0.01 | 2.015 | 15.65 | 4.57 | 11.0 | 88.7 | 0.2 | -2.56 | 1.74 | 0.79 | 0.80 | 1.32 | 147111 | 5950 | 56 | 4693 | 0 | 0 | 0 | logfile |
✔ | 7PiM | 13442 | 2024-03-15 | 2021-08-20 | 4.6 | 5.02 | 5.18 | 4.6 | 0.002 | 0.41 | 0.0 | 0.03 | 8.31 | 0.00 | 1.900 | 45.64 | 0.67 | 2.0 | 98.0 | 0.0 | 2.23 | 0.81 | 0.76 | — | 4.6 | 0.002 | 0.52 | 0.0 | 0.04 | 11.82 | 0.00 | 1.561 | 70.94 | 0.00 | 2.3 | 97.7 | 0.0 | 0.58 | 0.98 | 0.83 | 0.77 | — | 11844 | 1412 | 12 | 0 | 8 | 0 | 524 | logfile |
✔ | 7Sii | 25142 | 2024-03-18 | 2021-10-14 | 3.45 | 3.63 | — | 3.6 | 0.008 | 0.74 | 0.0 | 0.03 | 13.75 | 0.00 | 2.220 | 5.25 | 2.21 | 2.9 | 97.1 | 0.0 | 2.94 | 0.64 | 0.79 | 2.61 | 3.6 | 0.004 | 0.53 | 0.0 | 0.03 | 15.14 | 0.00 | 2.112 | 7.34 | 1.75 | 3.1 | 96.9 | 0.0 | 2.66 | 0.49 | 0.66 | 0.83 | 1.87 | 20484 | 1286 | 8 | 0 | 4 | 0 | 10184 | logfile |
✔ | 7oN1 | 12993 | 2024-03-15 | 2021-05-25 | 3.35 | 3.18 | — | 3.4 | 0.002 | 0.47 | 0.0 | 0.03 | 26.14 | 0.00 | 2.120 | 6.38 | 0.00 | 1.5 | 98.5 | 0.0 | -0.25 | 0.82 | 0.83 | 1.11 | 3.4 | 0.004 | 0.57 | 0.0 | 0.03 | 27.16 | 0.00 | 2.098 | 6.97 | 2.50 | 2.8 | 97.2 | 0.0 | 2.38 | 1.33 | 0.84 | 0.90 | 1.47 | 11150 | 777 | 12 | 246 | 0 | 0 | 0 | logfile |
✔ | 7BL6 | 12219 | 2024-03-19 | 2021-01-18 | 4.0 | 7.11 | — | 4.0 | 0.002 | 0.42 | 0.0 | 0.03 | 22.70 | 0.00 | 2.117 | 10.95 | 0.07 | 4.7 | 95.3 | 0.1 | -0.28 | 0.92 | 0.83 | — | 4.0 | 0.003 | 0.59 | 0.0 | 0.03 | 23.88 | 0.00 | 1.985 | 24.44 | 1.27 | 6.9 | 93.0 | 0.1 | -1.13 | 3.11 | 0.94 | 0.84 | — | 92769 | 3600 | 42 | 3016 | 5 | 27 | 0 | logfile |
✔ | 7EZ0 | 31385 | 2024-03-11 | 2021-06-01 | 3.14 | 3.26 | — | 3.2 | 0.003 | 0.56 | 0.0 | 0.03 | 23.64 | 0.00 | 1.804 | 2.25 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.74 | 0.79 | — | 3.2 | 0.006 | 0.70 | 0.0 | 0.04 | 23.85 | 0.00 | 1.860 | 8.26 | 0.00 | 0.0 | 0.0 | 0.0 | — | 1.55 | 0.77 | 0.86 | — | 8306 | 0 | 1 | 387 | 27 | 0 | 0 | logfile |
✔ | 7TAN | 25777 | 2024-03-15 | 2021-12-21 | 3.0 | 2.95 | — | 3.1 | 0.003 | 0.47 | 0.0 | 0.03 | 27.16 | 0.00 | 2.287 | 3.25 | 0.00 | 2.8 | 97.2 | 0.0 | 2.18 | 0.82 | 0.85 | 2.22 | 3.1 | 0.003 | 0.51 | 0.0 | 0.03 | 27.66 | 0.00 | 2.199 | 3.02 | 2.03 | 2.0 | 98.0 | 0.0 | 2.22 | 0.32 | 0.84 | 0.87 | 1.95 | 12119 | 768 | 12 | 294 | 0 | 0 | 0 | logfile |
✔ | 8JM9 | 36410 | 2024-03-19 | 2023-06-04 | 2.6 | 2.53 | 2.63 | 2.8 | 0.003 | 0.47 | 0.0 | 0.03 | 15.46 | 0.00 | 2.099 | 5.71 | 0.61 | 1.3 | 98.7 | 0.0 | 3.59 | 0.45 | 0.69 | 2.96 | 2.8 | 0.002 | 0.44 | 0.0 | 0.03 | 15.52 | 0.00 | 2.111 | 4.00 | 0.30 | 1.7 | 98.3 | 0.0 | 3.70 | 0.36 | 0.57 | 0.80 | 3.00 | 24520 | 1524 | 4 | 0 | 0 | 0 | 12472 | logfile |
✔ | 7Yi1 | 33848 | 2024-03-16 | 2022-07-14 | 2.8 | 2.41 | 2.78 | 2.6 | 0.003 | 0.57 | 0.0 | 0.03 | 26.98 | 0.00 | 2.155 | 7.30 | 0.37 | 1.9 | 98.1 | 0.0 | 0.11 | 0.81 | 0.84 | 2.94 | 2.6 | 0.003 | 0.58 | 0.0 | 0.04 | 27.73 | 0.00 | 2.182 | 7.41 | 1.98 | 2.4 | 97.6 | 0.0 | 1.57 | 0.17 | 0.81 | 0.86 | 2.63 | 13926 | 967 | 12 | 302 | 0 | 0 | 0 | logfile |
✔ | 7o5H | 12736 | 2024-03-22 | 2021-04-08 | 3.1 | 2.93 | 3.04 | 2.8 | 0.002 | 0.33 | 0.0 | 0.03 | 21.63 | 0.00 | 1.262 | 5.88 | 0.98 | 2.1 | 97.9 | 0.0 | 1.09 | 0.86 | 0.83 | 1.84 | 2.8 | 0.006 | 0.67 | 0.0 | 0.04 | 22.33 | 0.01 | 1.076 | 13.62 | 3.21 | 3.9 | 96.1 | 0.0 | 0.32 | 1.48 | 0.87 | 0.85 | 1.45 | 34436 | 1730 | 22 | 964 | 167 | 0 | 0 | logfile |
✔ | 6V3A | 21031 | 2024-03-20 | 2019-11-25 | 2.82 | 3.02 | — | 3.0 | 0.002 | 0.51 | 0.0 | 0.03 | 22.75 | 0.02 | 1.898 | 5.96 | 0.07 | 2.8 | 97.2 | 0.1 | -1.23 | 0.82 | 0.82 | 2.96 | 3.0 | 0.006 | 0.69 | 0.0 | 0.04 | 22.98 | 0.01 | 1.658 | 6.97 | 2.86 | 4.8 | 95.2 | 0.1 | -0.01 | 1.13 | 0.84 | 0.88 | 3.00 | 142113 | 5457 | 74 | 4615 | 95 | 520 | 0 | logfile |
✔ | 6WQQ | 21873 | 2024-03-17 | 2020-04-29 | 3.1 | 2.53 | 3.04 | 3.0 | 0.002 | 0.45 | 2.0 | 0.03 | 22.73 | 0.00 | 2.203 | 3.54 | 0.36 | 3.9 | 96.1 | 0.0 | -4.07 | 0.73 | 0.80 | 2.74 | 3.0 | 0.005 | 0.75 | 0.0 | 0.04 | 23.31 | 0.01 | 1.956 | 5.70 | 6.27 | 7.1 | 92.9 | 0.0 | -2.99 | 1.18 | 0.75 | 0.82 | 2.67 | 81134 | 2671 | 28 | 2809 | 1 | 0 | 0 | logfile |
✔ | 6WCC | 21606 | 2024-03-15 | 2020-03-30 | 3.24 | 3.27 | — | 3.3 | 0.003 | 0.51 | 0.0 | 0.03 | 15.73 | 0.00 | 2.025 | 4.39 | 2.26 | 0.8 | 99.2 | 0.0 | 1.46 | 0.53 | 0.76 | 1.58 | 3.3 | 0.003 | 0.50 | 0.0 | 0.03 | 16.07 | 0.00 | 2.212 | 7.31 | 3.06 | 2.3 | 97.7 | 0.0 | 4.51 | 0.73 | 0.51 | 0.78 | 1.73 | 11629 | 734 | 6 | 0 | 5 | 12 | 5908 | logfile |
✔ | 7RZV | 24779 | 2024-03-10 | 2021-08-27 | 2.11 | 2.24 | — | 2.0 | 0.005 | 0.35 | 0.0 | 0.03 | 14.68 | 0.00 | 2.348 | 5.44 | 0.00 | 0.0 | 100.0 | 0.0 | 3.06 | 0.79 | 0.80 | 2.21 | 2.0 | 0.004 | 0.36 | 0.0 | 0.03 | 16.04 | 0.00 | 2.237 | 5.05 | 1.35 | 0.0 | 100.0 | 0.0 | 5.77 | 0.88 | 0.83 | 0.83 | 1.74 | 2562 | 339 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8D9L | 27265 | 2024-03-10 | 2022-06-10 | 4.04 | 5.24 | 4.18 | 4.5 | 0.002 | 0.44 | 0.0 | 0.03 | 16.63 | 0.00 | 2.250 | 7.25 | 0.43 | 1.8 | 98.2 | 0.0 | 1.09 | 0.89 | 0.80 | — | 4.4 | 0.005 | 0.61 | 0.0 | 0.04 | 17.39 | 0.00 | 2.110 | 20.63 | 0.00 | 4.1 | 95.9 | 0.0 | 0.17 | 0.66 | 0.90 | 0.84 | — | 5757 | 553 | 4 | 65 | 1 | 0 | 0 | logfile |
✔ | 8SRo | 40736 | 2024-03-10 | 2023-05-05 | 3.3 | 3.43 | 3.26 | 3.4 | 0.003 | 0.56 | 0.0 | 0.03 | 26.26 | 0.02 | 2.348 | 8.41 | 0.90 | 5.3 | 94.7 | 0.0 | -1.78 | 0.66 | 0.78 | 3.49 | 3.4 | 0.004 | 0.59 | 0.0 | 0.03 | 25.89 | 0.00 | 2.372 | 7.58 | 3.14 | 7.7 | 92.3 | 0.0 | -0.84 | 0.91 | 0.65 | 0.79 | 2.78 | 4132 | 345 | 8 | 72 | 0 | 0 | 0 | logfile |
✔ | 8CZi | 27098 | 2024-03-10 | 2022-05-24 | 2.22 | 2.26 | 2.61 | 2.0 | 0.004 | 0.33 | 0.0 | 0.03 | 14.48 | 0.00 | 2.382 | 6.62 | 0.00 | 0.0 | 100.0 | 0.0 | 2.90 | 0.78 | 0.80 | 1.97 | 2.0 | 0.003 | 0.38 | 0.0 | 0.03 | 15.19 | 0.00 | 2.148 | 5.65 | 1.35 | 0.0 | 100.0 | 0.0 | 5.64 | 0.85 | 0.82 | 0.84 | 1.98 | 2550 | 339 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8D9K | 27264 | 2024-03-10 | 2022-06-10 | 3.72 | 4.58 | 3.85 | 4.1 | 0.001 | 0.37 | 0.0 | 0.03 | 16.35 | 0.00 | 2.270 | 6.46 | 0.64 | 1.9 | 98.1 | 0.0 | 1.53 | 0.89 | 0.84 | 2.42 | 4.1 | 0.003 | 0.50 | 0.0 | 0.04 | 17.22 | 0.00 | 2.142 | 11.42 | 2.14 | 2.1 | 97.9 | 0.0 | 0.75 | 0.56 | 0.90 | 0.86 | 1.97 | 5708 | 546 | 3 | 65 | 0 | 0 | 0 | logfile |
✔ | 7RZT | 24777 | 2024-03-10 | 2021-08-27 | 2.35 | 2.27 | — | 2.1 | 0.005 | 0.32 | 0.0 | 0.03 | 14.89 | 0.00 | 2.388 | 3.83 | 0.00 | 2.9 | 97.1 | 0.0 | 2.81 | 0.77 | 0.79 | 2.62 | 2.0 | 0.003 | 0.32 | 0.0 | 0.03 | 15.53 | 0.00 | 2.337 | 5.44 | 0.35 | 0.0 | 100.0 | 0.0 | 6.28 | 0.23 | 0.80 | 0.83 | 2.93 | 2451 | 324 | 6 | 0 | 0 | 0 | 0 | logfile |