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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6GBZ | 4378 | 2022-12-16 | 2018-04-16 | 3.8 | 4.02 | — | 3.9 | 0.002 | 0.61 | 0.0 | 0.03 | 13.32 | 0.00 | 2.235 | 2.87 | 0.08 | 6.2 | 93.4 | 0.3 | -4.24 | 0.72 | 0.67 | 1.01 | 3.9 | 0.005 | 0.72 | 0.0 | 0.04 | 15.83 | 0.01 | 1.983 | 19.65 | 1.04 | 10.8 | 89.1 | 0.1 | -2.14 | 0.88 | 0.78 | 0.77 | 1.03 | 86401 | 3074 | 29 | 2908 | 0 | 0 | 0 | logfile |
✔ | 6GC4 | 4380 | 2022-12-15 | 2018-04-17 | 4.3 | 4.54 | — | 4.3 | 0.003 | 0.77 | 0.0 | 0.03 | 13.73 | 0.01 | 2.252 | 4.16 | 0.39 | 6.9 | 92.9 | 0.2 | -3.77 | 0.70 | 0.60 | — | 4.3 | 0.007 | 0.79 | 0.0 | 0.04 | 15.51 | 0.01 | 1.989 | 26.90 | 0.04 | 11.4 | 88.5 | 0.1 | -2.30 | 0.97 | 0.81 | 0.79 | — | 80165 | 2836 | 26 | 2705 | 0 | 0 | 0 | logfile |
✔ | 7BL3 | 12216 | 2022-12-16 | 2021-01-18 | 3.5 | 3.69 | — | 3.5 | 0.002 | 0.48 | 0.0 | 0.03 | 14.11 | 0.00 | 2.089 | 12.48 | 0.03 | 6.4 | 93.6 | 0.0 | -1.33 | 0.75 | 0.79 | 1.02 | 3.5 | 0.004 | 0.63 | 0.0 | 0.04 | 15.54 | 0.00 | 1.991 | 17.00 | 0.68 | 8.6 | 91.4 | 0.0 | -1.72 | 0.59 | 0.76 | 0.82 | 1.25 | 92831 | 3612 | 39 | 3021 | 2 | 27 | 0 | logfile |
✔ | 6ZLG | 11265 | 2022-12-18 | 2020-06-30 | 3.0 | 3.18 | — | 3.1 | 0.003 | 0.44 | 0.0 | 0.03 | 16.50 | 0.00 | 2.180 | 7.56 | 4.15 | 0.1 | 99.9 | 0.0 | 1.26 | 0.80 | 0.87 | 2.98 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 33008 | 4072 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 7FHL | 31586 | 2022-12-13 | 2021-07-29 | 3.1 | 3.71 | — | 3.6 | 0.002 | 0.55 | 0.0 | 0.03 | 12.50 | 0.00 | 2.150 | 6.83 | 0.00 | 1.2 | 98.8 | 0.0 | 1.13 | 0.70 | 0.81 | 1.99 | 3.6 | 0.003 | 0.58 | 0.0 | 0.04 | 14.73 | 0.00 | 2.130 | 8.74 | 0.34 | 2.1 | 97.9 | 0.0 | 2.16 | 0.46 | 0.69 | 0.82 | 1.72 | 11058 | 1326 | 6 | 0 | 28 | 0 | 0 | logfile |
✔ | 6W7N | 21572 | 2022-12-21 | 2020-03-19 | 3.4 | 3.72 | — | 3.6 | 0.002 | 0.46 | 0.0 | 0.03 | 14.05 | 0.00 | 1.907 | 8.15 | 0.08 | 8.2 | 91.5 | 0.3 | -4.03 | 0.78 | 0.78 | 1.44 | 3.6 | 0.005 | 0.64 | 0.0 | 0.03 | 15.40 | 0.00 | 2.136 | 11.29 | 0.69 | 11.6 | 88.1 | 0.3 | -2.05 | 1.23 | 0.81 | 0.83 | 1.49 | 42287 | 1660 | 15 | 1372 | 0 | 0 | 0 | logfile |
✔ | 6W77 | 21569 | 2022-12-22 | 2020-03-18 | 3.6 | 3.44 | — | 3.3 | 0.002 | 0.53 | 0.0 | 0.03 | 14.96 | 0.00 | 2.084 | 9.36 | 0.12 | 6.1 | 93.7 | 0.2 | -3.22 | 0.73 | 0.67 | 0.91 | 3.3 | 0.006 | 0.86 | 0.0 | 0.04 | 16.81 | 0.01 | 1.852 | 18.02 | 0.87 | 12.2 | 87.6 | 0.2 | -2.34 | 2.05 | 0.76 | 0.71 | 1.02 | 47940 | 1949 | 18 | 1519 | 0 | 0 | 0 | logfile |
✔ | 6W7M | 21571 | 2022-12-22 | 2020-03-19 | 3.8 | 3.72 | — | 3.6 | 0.002 | 0.58 | 0.0 | 0.03 | 16.56 | 0.00 | 2.031 | 14.83 | 0.10 | 7.4 | 92.3 | 0.3 | -3.67 | 0.68 | 0.56 | 0.12 | 3.6 | 0.003 | 0.74 | 0.0 | 0.04 | 18.06 | 0.01 | 2.049 | 23.10 | 0.89 | 11.3 | 88.5 | 0.3 | -2.41 | 1.33 | 0.71 | 0.61 | 0.43 | 50694 | 2319 | 20 | 1512 | 0 | 0 | 0 | logfile |
✔ | 7JGG | 22326 | 2022-12-11 | 2020-07-19 | 4.88 | 8.00 | — | 7.7 | 0.002 | 0.46 | 0.0 | 0.03 | 13.22 | 0.00 | 1.988 | 54.49 | 0.00 | 3.3 | 96.5 | 0.2 | 1.67 | 0.66 | 0.64 | — | 7.6 | 0.003 | 0.54 | 0.0 | 0.03 | 12.79 | 0.00 | 1.898 | 99.07 | 0.00 | 5.9 | 94.1 | 0.0 | 0.89 | 1.75 | 0.67 | 0.71 | — | 4210 | 506 | 1 | 0 | 0 | 0 | 28 | logfile |
✔ | 6W7W | 21573 | 2022-12-15 | 2020-03-19 | 3.9 | 4.46 | — | 4.0 | 0.002 | 0.49 | 0.0 | 0.03 | 15.50 | 0.00 | 2.156 | 10.72 | 0.12 | 4.1 | 95.9 | 0.0 | -2.82 | 0.91 | 0.83 | 1.20 | 4.0 | 0.007 | 0.80 | 0.0 | 0.04 | 16.98 | 0.01 | 2.085 | 26.98 | 0.47 | 8.0 | 92.0 | 0.0 | -1.57 | 0.61 | 0.92 | 0.85 | 1.34 | 26883 | 1047 | 10 | 871 | 0 | 0 | 0 | logfile |
✔ | 6W6K | 21558 | 2022-12-22 | 2020-03-17 | 3.6 | 3.84 | — | 3.7 | 0.002 | 0.47 | 0.0 | 0.03 | 14.66 | 0.00 | 2.113 | 10.39 | 0.00 | 6.9 | 93.1 | 0.0 | -4.28 | 0.70 | 0.59 | 0.52 | 3.7 | 0.004 | 0.81 | 0.0 | 0.04 | 17.50 | 0.01 | 2.010 | 22.80 | 1.18 | 14.2 | 85.8 | 0.1 | -3.32 | 1.40 | 0.75 | 0.67 | 0.42 | 46934 | 1873 | 19 | 1534 | 1 | 0 | 0 | logfile |
✔ | 6WFQ | 21652 | 2022-12-11 | 2020-04-03 | 3.9 | 4.88 | 3.77 | 3.9 | 0.002 | 0.49 | 0.0 | 0.03 | 16.66 | 0.00 | 2.265 | 8.11 | 0.80 | 4.3 | 95.7 | 0.0 | -2.49 | 0.84 | 0.78 | 0.76 | 3.8 | 0.004 | 0.87 | 0.0 | 0.04 | 19.04 | 0.00 | 2.205 | 19.35 | 0.80 | 6.5 | 93.5 | 0.0 | -0.24 | 0.73 | 0.85 | 0.80 | 0.76 | 4164 | 447 | 4 | 30 | 0 | 0 | 0 | logfile |
✔ | 6XMG | 22258 | 2022-12-12 | 2020-06-30 | 4.8 | 8.26 | — | 3.9 | 0.002 | 0.53 | 0.0 | 0.03 | 16.06 | 0.00 | 2.187 | 10.84 | 0.00 | 6.7 | 93.3 | 0.0 | -2.01 | 0.90 | 0.74 | — | 3.4 | 0.005 | 0.88 | 0.0 | 0.04 | 19.20 | 0.01 | 1.956 | 53.80 | 0.20 | 12.6 | 87.4 | 0.0 | -2.59 | 1.34 | 0.90 | 0.78 | — | 8361 | 638 | 4 | 154 | 1 | 0 | 0 | logfile |
✔ | 7DBP | 30161 | 2022-12-13 | 2020-10-21 | 4.5 | 5.32 | — | 4.3 | 0.003 | 0.45 | 0.0 | 0.03 | 27.36 | 0.00 | 2.226 | 8.54 | 0.57 | 4.4 | 94.9 | 0.7 | -0.94 | 0.87 | 0.76 | — | 4.3 | 0.004 | 0.62 | 0.0 | 0.03 | 30.17 | 0.00 | 2.173 | 21.76 | 0.00 | 3.2 | 96.8 | 0.0 | 1.12 | 2.51 | 0.90 | 0.74 | — | 13801 | 837 | 11 | 350 | 0 | 0 | 0 | logfile |
✔ | 6XMF | 22257 | 2022-12-11 | 2020-06-30 | 3.1 | 3.28 | — | 3.3 | 0.002 | 0.56 | 0.0 | 0.03 | 16.46 | 0.00 | 2.246 | 8.82 | 0.00 | 6.8 | 93.2 | 0.0 | -1.78 | 0.68 | 0.71 | 2.25 | 3.2 | 0.003 | 0.61 | 0.0 | 0.03 | 17.63 | 0.00 | 2.152 | 15.34 | 0.60 | 9.3 | 90.7 | 0.0 | -0.42 | 0.47 | 0.72 | 0.77 | 2.82 | 7382 | 627 | 3 | 109 | 1 | 0 | 0 | logfile |
✘ | 6X36 | 22019 | 2022-12-19 | 2020-05-21 | 4.7 | 4.72 | 5.52 | 4.6 | 0.002 | 0.53 | 0.0 | 0.03 | 10.40 | 0.00 | 2.228 | 5.93 | 0.00 | 2.2 | 97.8 | 0.0 | 0.96 | 0.76 | 0.70 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 100164 | 13692 | 12 | 0 | 1376 | 0 | 0 | logfile |
✔ | 6PC6 | 20297 | 2022-12-14 | 2019-06-16 | 2.5 | 3.08 | — | 2.9 | 0.008 | 0.50 | 0.0 | 0.03 | 12.75 | 0.02 | 1.930 | 2.96 | 2.11 | 6.3 | 93.7 | 0.0 | -3.58 | 0.73 | 0.88 | 4.50 | 2.9 | 0.004 | 0.63 | 0.0 | 0.03 | 14.58 | 0.01 | 1.976 | 7.98 | 3.42 | 6.7 | 93.1 | 0.2 | -0.78 | 0.91 | 0.74 | 0.90 | 4.21 | 72127 | 963 | 8 | 3015 | 1 | 0 | 0 | logfile |
✔ | 7A8P | 11679 | 2022-12-11 | 2020-08-30 | 3.5 | 3.61 | 3.44 | 3.6 | 0.004 | 0.52 | 0.0 | 0.03 | 16.07 | 0.00 | 2.165 | 2.86 | 0.63 | 2.2 | 97.8 | 0.0 | 0.97 | 0.73 | 0.78 | 1.97 | 3.5 | 0.003 | 0.58 | 0.0 | 0.04 | 16.93 | 0.00 | 2.087 | 8.87 | 0.25 | 2.1 | 97.9 | 0.0 | 2.59 | 0.48 | 0.74 | 0.79 | 2.03 | 7305 | 911 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 6K3o | 9910 | 2022-12-16 | 2019-05-21 | 3.4 | 3.86 | — | 3.8 | 0.003 | 0.56 | 0.0 | 0.03 | 14.46 | 0.00 | 1.077 | 16.09 | 0.00 | 3.8 | 96.2 | 0.0 | -1.52 | 0.79 | 0.82 | 3.15 | 3.8 | 0.004 | 0.73 | 0.0 | 0.03 | 17.05 | 0.00 | 1.627 | 5.96 | 0.75 | 2.1 | 97.9 | 0.0 | 3.83 | 0.50 | 0.76 | 0.81 | 2.46 | 31508 | 3790 | 48 | 0 | 36 | 0 | 0 | logfile |
✔ | 5LY6 | 4118 | 2022-12-11 | 2016-09-24 | 4.5 | 4.72 | — | 4.3 | 0.006 | 1.24 | 0.0 | 0.03 | 24.28 | 0.02 | 1.526 | 94.62 | 36.32 | 20.9 | 74.2 | 4.9 | -5.32 | 0.34 | 0.59 | — | 4.4 | 0.004 | 0.81 | 0.0 | 0.04 | 13.96 | 0.00 | 2.167 | 15.68 | 0.24 | 10.2 | 89.3 | 0.4 | -2.62 | 3.61 | 0.40 | 0.77 | — | 3725 | 471 | 1 | 0 | 0 | 0 | 0 | logfile |