Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6K9F	9948	2022-05-14	2019-06-15	3.7	7.50	4.15	7.2	0.002	0.45	0.0	0.03	11.87	0.00	2.356	5.29	0.00	0.0	100.0	0.0	-0.68	0.66	0.76	0.04	7.0	0.004	1.14	0.0	0.05	18.10	0.00	2.005	26.86	0.63	1.3	98.7	0.0	-0.41	3.86	0.67	0.84	0.10	8484	1044	12	0	0	0	0	logfile
✔	7BL6	12219	2022-05-16	2021-01-18	4.0	7.11	—	4.0	0.002	0.42	0.0	0.03	13.17	0.00	2.117	11.03	0.07	4.7	95.3	0.1	-0.28	0.92	0.83	—	4.0	0.004	0.66	0.0	0.03	16.96	0.00	1.946	35.11	0.17	8.2	91.8	0.1	-1.70	3.13	0.95	0.82	—	92769	3600	42	3016	5	27	0	logfile
✔	6ZoK	11321	2022-05-18	2020-07-07	2.8	2.96	2.77	2.9	0.003	0.52	0.0	0.03	14.36	0.00	1.989	4.11	1.48	2.2	97.8	0.0	0.55	0.74	0.86	4.30	2.9	0.007	0.68	0.0	0.04	16.03	0.01	1.814	4.24	2.85	2.9	97.1	0.0	0.44	1.56	0.75	0.88	4.00	50192	2970	26	1232	110	0	0	logfile
✔	6PC8	20299	2022-05-15	2019-06-16	2.9	3.26	—	3.1	0.006	0.48	0.0	0.03	12.75	0.02	1.931	3.26	2.62	7.2	92.7	0.1	-4.11	0.71	0.86	3.45	3.1	0.005	0.62	0.0	0.03	14.57	0.01	2.126	8.78	4.58	7.9	92.0	0.1	-1.64	0.45	0.72	0.88	3.21	72169	967	8	3015	1	0	0	logfile
✔	6PC6	20297	2022-05-15	2019-06-16	2.5	3.08	—	2.9	0.008	0.50	0.0	0.03	12.75	0.02	1.930	2.96	2.11	6.3	93.7	0.0	-3.58	0.73	0.88	4.50	2.9	0.004	0.63	0.0	0.03	14.58	0.01	1.976	7.98	3.42	6.7	93.1	0.2	-0.78	0.91	0.74	0.90	4.21	72127	963	8	3015	1	0	0	logfile
✔	6WQN	21872	2022-05-15	2020-04-29	2.9	2.43	2.85	2.8	0.003	0.49	3.0	0.03	14.74	0.00	1.951	9.08	2.31	2.9	97.1	0.0	-3.39	0.75	0.85	3.70	2.8	0.009	1.04	0.0	0.05	17.25	0.01	2.001	4.97	6.16	6.8	93.2	0.0	-2.53	0.37	0.77	0.87	3.58	80700	2646	28	2798	1	0	0	logfile
✔	6WQQ	21873	2022-05-15	2020-04-29	3.1	2.53	3.04	3.0	0.002	0.45	2.0	0.03	14.51	0.00	2.203	3.56	0.36	3.9	96.1	0.0	-4.07	0.73	0.80	2.74	3.0	0.003	0.62	0.0	0.04	16.34	0.01	2.008	5.61	0.45	5.9	94.1	0.0	-2.84	1.18	0.74	0.81	2.67	81134	2671	28	2809	1	0	0	logfile
✔	6NTS	0510	2022-05-13	2019-01-30	3.63	4.31	3.00	3.6	0.016	0.51	0.0	0.03	13.21	0.00	1.917	2.11	0.00	3.8	96.2	0.0	-2.08	0.89	0.77	0.59	3.7	0.003	0.62	0.0	0.04	15.19	0.00	2.070	9.03	0.27	2.9	97.1	0.0	0.84	2.30	0.92	0.85	1.08	9956	1240	5	0	3	0	0	logfile
✔	6ENJ	3899	2022-05-20	2017-10-05	3.7	3.76	—	3.7	0.003	0.61	0.0	0.03	14.09	0.01	1.234	4.11	0.06	8.4	91.3	0.3	-4.96	0.77	0.77	1.43	3.7	0.006	0.72	0.0	0.04	15.68	0.01	1.562	16.08	0.33	10.5	89.3	0.2	-3.02	1.67	0.79	0.80	1.32	147111	5950	56	4693	0	0	0	logfile
✔	6V3D	21033	2022-05-16	2019-11-25	2.95	3.39	—	3.2	0.002	0.49	0.0	0.03	14.48	0.01	1.698	5.98	0.04	2.8	97.1	0.1	-1.93	0.85	0.86	2.47	3.2	0.009	0.80	0.0	0.04	16.07	0.01	1.730	8.34	3.61	5.0	94.9	0.1	-0.91	1.18	0.86	0.90	2.57	89040	3117	45	3007	108	231	0	logfile
✔	6V3B	21032	2022-05-18	2019-11-25	2.91	3.09	—	3.0	0.002	0.51	0.0	0.03	14.38	0.01	1.895	5.96	0.05	2.9	97.1	0.1	-1.21	0.83	0.83	2.56	3.0	0.008	0.77	0.0	0.04	16.12	0.01	1.685	7.09	3.40	5.1	94.9	0.1	-0.31	1.58	0.85	0.88	2.53	140290	5457	76	4535	95	398	0	logfile
✔	6NF8	9362	2022-05-13	2018-12-19	3.48	3.99	—	3.6	0.001	0.39	0.0	0.03	12.76	0.00	1.916	3.14	0.58	10.4	88.3	1.3	-2.53	0.76	0.60	1.16	3.5	0.003	0.67	0.0	0.04	15.68	0.00	2.019	12.91	0.19	5.5	94.5	0.0	-0.34	2.59	0.84	0.79	1.23	65776	5509	32	952	147	0	0	logfile
✔	6WCB	21605	2022-05-13	2020-03-30	3.17	3.17	—	3.2	0.005	0.41	0.0	0.03	13.87	0.00	2.128	2.50	1.29	0.8	99.2	0.0	0.58	0.55	0.77	2.89	3.2	0.003	0.49	0.0	0.04	15.56	0.00	2.085	4.05	0.16	1.7	98.3	0.0	3.29	1.29	0.55	0.79	2.44	11647	734	6	0	7	40	5904	logfile
✔	6HD5	0201	2022-05-13	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.52	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.003	0.73	0.0	0.04	11.96	0.00	2.138	15.29	0.00	5.4	94.5	0.1	-0.09	2.01	0.45	0.55	—	9707	1234	3	0	0	0	0	logfile
✔	6SiH	10210	2022-05-17	2019-08-09	4.7	5.01	—	4.7	0.005	0.54	0.0	0.03	12.61	0.00	1.931	8.52	0.00	5.9	94.1	0.0	-1.62	0.89	0.79	—	4.7	0.002	0.58	0.0	0.04	13.41	0.00	2.088	10.17	0.00	5.0	95.0	0.0	0.95	1.58	0.90	0.82	—	37310	4880	10	0	0	0	0	logfile
✔	6WCC	21606	2022-05-13	2020-03-30	3.24	3.27	—	3.3	0.003	0.51	0.0	0.03	15.73	0.00	2.025	4.39	2.26	0.8	99.2	0.0	1.46	0.53	0.76	1.58	3.3	0.003	0.52	0.0	0.03	15.73	0.00	2.212	7.06	0.32	2.6	97.4	0.0	4.20	0.73	0.52	0.78	1.78	11629	734	6	0	5	12	5908	logfile
✔	6HD7	0202	2022-05-18	2018-08-17	3.4	3.54	—	3.3	0.002	0.43	0.0	0.03	14.93	0.00	0.345	25.04	0.08	11.1	87.1	1.9	-3.26	0.66	0.65	0.74	3.3	0.007	0.79	0.0	0.04	17.84	0.01	1.953	18.84	0.71	7.3	92.3	0.4	-1.37	1.56	0.76	0.87	1.70	141153	7514	52	3767	234	0	0	logfile
✔	6GC0	4379	2022-05-16	2018-04-16	3.8	4.10	—	4.0	0.002	0.52	0.0	0.03	12.29	0.00	2.283	3.48	0.04	5.9	94.0	0.1	-4.24	0.72	0.66	1.32	4.0	0.006	0.75	0.0	0.04	15.56	0.01	1.958	23.06	1.00	11.1	88.8	0.1	-2.13	2.61	0.78	0.76	1.15	84138	2950	28	2848	0	0	0	logfile
✔	3J9W	6306	2022-05-16	2015-03-16	3.9	3.93	—	3.8	0.010	1.50	0.0	0.03	15.63	0.02	1.433	8.88	0.26	6.0	92.0	2.0	-1.66	0.74	0.72	0.72	3.8	0.005	0.78	0.0	0.04	17.69	0.01	2.004	20.58	1.64	8.4	91.0	0.6	-0.70	1.35	0.80	0.85	1.39	135425	5661	54	4675	0	0	0	logfile
✔	6GBZ	4378	2022-05-16	2018-04-16	3.8	4.02	—	3.9	0.002	0.61	0.0	0.03	13.32	0.00	2.235	2.85	0.08	6.2	93.4	0.3	-4.24	0.72	0.67	1.01	3.9	0.004	0.68	0.0	0.04	15.70	0.01	1.977	17.94	0.96	9.8	90.1	0.1	-1.94	0.85	0.78	0.77	0.96	86401	3074	29	2908	0	0	0	logfile

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