Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8G86	29837	2023-04-22	2023-02-17	2.3	2.24	2.41	2.5	0.003	0.50	0.0	0.03	27.67	0.00	2.275	6.71	0.95	0.9	99.1	0.0	1.60	0.69	0.83	5.02	2.4	0.005	0.63	0.0	0.04	29.42	0.00	2.112	7.41	2.06	1.5	98.5	0.0	2.50	0.92	0.70	0.85	4.86	11972	759	10	290	0	0	0	logfile
✔	7WiJ	32531	2023-04-22	2022-01-03	3.17	3.08	3.01	3.2	0.002	0.50	0.0	0.03	14.49	0.00	2.243	4.52	0.00	0.4	99.6	0.0	2.75	0.70	0.85	1.82	3.2	0.003	0.53	0.0	0.03	15.57	0.00	2.262	4.68	0.00	0.8	99.2	0.0	3.40	0.26	0.71	0.87	1.79	12396	1602	6	0	0	0	0	logfile
✔	8A3B	15110	2023-04-23	2022-06-07	3.1	2.31	2.85	2.9	0.003	0.55	0.0	0.03	14.17	0.00	2.091	4.59	0.00	0.9	99.1	0.0	2.21	0.73	0.72	2.28	2.1	0.004	0.59	0.0	0.04	16.26	0.00	2.134	6.73	0.49	1.6	98.4	0.0	2.23	0.49	0.74	0.77	2.04	14448	1792	7	0	0	0	0	logfile
✔	7XSM	33427	2023-04-22	2022-05-14	4.01	4.70	4.03	4.0	0.002	0.47	0.0	0.03	15.76	0.00	1.969	7.06	0.00	0.0	0.0	0.0	—	0.90	0.75	—	4.0	0.007	0.76	0.0	0.04	19.93	0.01	1.773	49.65	0.00	0.0	0.0	0.0	—	1.70	0.92	0.82	—	12464	0	1	388	0	0	4165	logfile
✔	6HD5	0201	2023-04-21	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.004	0.81	0.0	0.04	11.92	0.01	2.072	21.86	0.00	6.4	93.5	0.1	-0.40	2.04	0.46	0.56	—	9707	1234	3	0	0	0	0	logfile
✔	6WFQ	21652	2023-04-20	2020-04-03	3.9	4.88	3.77	3.9	0.002	0.49	0.0	0.03	16.66	0.00	2.265	8.11	0.80	4.3	95.7	0.0	-2.49	0.84	0.78	0.76	3.8	0.003	0.92	0.0	0.04	19.12	0.00	2.154	16.10	0.00	6.3	93.7	0.0	-0.17	0.73	0.85	0.80	0.54	4164	447	4	30	0	0	0	logfile
✔	8ESR	24422	2023-04-23	2022-10-14	3.2	3.24	—	3.0	0.002	0.47	0.0	0.03	15.69	0.00	2.118	7.71	0.28	3.0	96.9	0.1	0.71	0.76	0.74	2.20	3.0	0.005	0.57	0.0	0.04	15.74	0.00	2.095	10.25	0.32	4.1	95.9	0.1	1.10	0.34	0.78	0.77	2.07	116762	9286	57	2372	1	0	0	logfile
✔	8EUi	24423	2023-04-25	2022-10-18	3.1	3.13	—	3.1	0.004	0.52	0.0	0.03	15.20	0.00	2.143	7.87	0.18	3.8	96.2	0.1	-0.02	0.82	0.81	3.11	3.1	0.004	0.56	0.0	0.04	15.41	0.00	2.061	8.79	0.30	4.0	96.0	0.0	0.31	0.28	0.82	0.82	2.66	122892	7155	47	3131	1	0	0	logfile
✔	7Q2Z	13786	2023-04-20	2021-10-26	3.2	2.91	3.15	3.2	0.002	0.48	0.0	0.03	18.78	0.00	2.227	4.26	0.00	6.5	93.4	0.1	-1.44	0.67	0.80	2.05	3.2	0.003	0.54	0.0	0.03	19.97	0.00	2.121	3.33	0.00	2.8	97.1	0.1	2.11	1.23	0.70	0.86	1.84	8258	902	4	46	0	0	0	logfile
✔	7oDR	12845	2023-04-19	2021-04-30	2.9	3.11	—	3.0	0.002	0.41	0.0	0.03	11.20	0.02	1.963	4.98	0.44	1.1	98.9	0.0	0.96	0.74	0.80	3.31	3.0	0.003	0.70	0.0	0.04	15.27	0.01	1.900	10.20	2.30	2.0	98.0	0.0	0.89	1.26	0.76	0.84	2.70	107464	9244	68	1489	135	0	0	logfile
✔	8CXM	27060	2023-04-20	2022-05-21	3.21	3.69	3.21	3.6	0.003	0.50	0.0	0.03	14.84	0.00	2.093	8.38	0.06	4.1	95.9	0.0	3.68	0.56	0.87	1.34	3.5	0.003	0.53	0.0	0.03	16.26	0.00	2.108	6.36	0.15	3.9	96.1	0.0	4.62	1.14	0.58	0.89	1.41	109560	14685	55	0	0	0	0	logfile
✔	7ZS5	14926	2023-04-26	2022-05-06	3.2	3.53	3.32	3.3	0.002	0.55	0.0	0.03	16.11	0.00	1.329	12.45	0.02	2.5	97.1	0.4	-1.60	0.84	0.78	1.80	3.3	0.008	0.84	0.0	0.05	17.43	0.01	1.851	20.60	1.03	9.6	90.0	0.4	-1.91	0.41	0.86	0.82	1.68	127849	6416	50	3603	24	0	0	logfile
✔	8G88	29843	2023-04-23	2023-02-17	4.8	7.18	4.63	3.2	0.004	0.60	0.0	0.03	28.10	0.00	2.275	7.12	0.93	1.0	99.0	0.0	1.45	0.78	0.60	—	3.2	0.006	0.68	0.0	0.04	29.42	0.00	2.075	29.38	0.00	2.5	97.5	0.0	1.55	2.54	0.91	0.81	—	13995	891	11	336	0	0	0	logfile
✔	7oQZ	13035	2023-04-20	2021-06-04	3.27	3.59	3.75	3.8	0.009	0.98	0.0	0.03	13.71	0.00	2.257	3.35	0.51	1.3	98.7	0.0	4.83	0.61	0.78	2.67	3.8	0.004	0.75	0.0	0.04	17.35	0.00	2.109	11.10	1.15	3.1	96.9	0.0	3.11	0.81	0.63	0.81	2.23	7996	948	8	0	16	0	0	logfile
✔	7E9C	31029	2023-04-26	2021-03-04	3.5	4.28	3.62	4.0	0.003	0.58	0.0	0.03	26.96	0.00	2.221	12.74	0.14	3.3	96.7	0.0	0.16	0.78	0.69	0.28	4.0	0.005	0.69	0.0	0.04	28.49	0.01	2.118	20.22	1.24	5.0	95.0	0.0	-0.18	1.64	0.83	0.79	0.82	12338	898	11	260	0	0	0	logfile
✔	6X33	22016	2023-04-22	2020-05-21	4.2	4.35	—	4.3	0.001	0.37	0.0	0.03	9.39	0.00	2.304	3.24	0.00	1.9	98.1	0.0	-4.22	0.55	0.69	—	4.3	0.003	0.64	0.0	0.04	11.75	0.00	2.056	8.49	0.06	3.0	97.0	0.0	0.21	0.65	0.57	0.72	—	112372	14796	16	0	1436	0	0	logfile
✘	6PoM	20416	2023-04-20	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	17.29	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4937	0	2	230	0	0	0	logfile
✔	6XMF	22257	2023-04-20	2020-06-30	3.1	3.28	—	3.3	0.002	0.56	0.0	0.03	16.46	0.00	2.246	8.60	0.00	6.8	93.2	0.0	-1.78	0.68	0.71	2.25	3.2	0.003	0.60	0.0	0.03	17.60	0.00	2.155	15.19	0.40	9.1	90.9	0.0	-0.44	0.47	0.70	0.76	2.47	7382	627	3	109	1	0	0	logfile
✔	7JiL	22345	2023-04-27	2020-07-23	2.8	3.31	—	3.2	0.002	0.48	0.0	0.03	14.71	0.00	1.991	6.76	2.15	9.9	90.0	0.1	-3.96	0.82	0.84	2.44	3.2	0.004	0.59	0.0	0.03	15.71	0.00	2.078	6.25	5.08	11.1	88.8	0.0	-2.22	0.38	0.82	0.86	2.68	132739	5314	54	4327	0	1	0	logfile
✔	8D9K	27264	2023-04-20	2022-06-10	3.72	4.58	3.85	4.1	0.001	0.37	0.0	0.03	9.12	0.00	2.270	6.46	0.64	1.9	98.1	0.0	1.53	0.89	0.84	2.42	4.1	0.002	0.50	0.0	0.04	11.60	0.00	2.170	10.48	0.00	2.6	97.4	0.0	0.62	0.58	0.90	0.85	2.17	5708	546	3	65	0	0	0	logfile

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