Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6XMG	22258	2023-11-14	2020-06-30	4.8	8.26	—	3.9	0.002	0.53	0.0	0.03	16.06	0.00	2.187	10.77	0.00	6.7	93.3	0.0	-2.01	0.90	0.74	—	3.5	0.006	0.90	0.0	0.04	19.11	0.01	1.970	55.81	0.20	13.4	86.6	0.0	-2.44	1.68	0.90	0.79	—	8361	638	4	154	1	0	0	logfile
✔	7YGC	33815	2023-11-14	2022-07-11	2.65	3.28	2.77	2.9	0.007	0.50	0.0	0.03	14.78	0.00	1.778	12.79	0.00	0.0	0.0	0.0	—	0.90	0.83	—	2.9	0.004	0.55	0.0	0.03	15.37	0.00	1.949	13.78	0.00	0.0	0.0	0.0	—	1.47	0.92	0.91	—	8690	0	3	407	6	0	0	logfile
✔	8A3B	15110	2023-11-16	2022-06-07	3.1	2.31	2.85	2.9	0.003	0.55	0.0	0.03	14.17	0.00	2.091	4.59	0.00	0.9	99.1	0.0	2.21	0.73	0.72	2.28	2.1	0.004	0.59	0.0	0.04	16.26	0.00	2.134	6.73	0.49	1.6	98.4	0.0	2.23	0.49	0.74	0.77	2.04	14448	1792	7	0	0	0	0	logfile
✔	8FKQ	29253	2023-11-21	2022-12-21	2.76	3.11	2.87	3.0	0.003	0.55	0.0	0.03	13.51	0.00	2.001	1.93	0.02	1.1	98.9	0.0	1.47	0.77	0.82	3.34	3.0	0.008	0.68	0.0	0.04	14.71	0.01	1.931	5.90	1.63	2.4	97.6	0.0	0.64	0.42	0.79	0.88	3.23	93805	6882	52	1784	53	0	0	logfile
✔	8BiP	16086	2023-11-19	2022-11-02	3.1	3.81	3.14	3.3	0.003	0.54	1.0	0.03	15.18	0.00	1.794	11.10	0.12	4.7	95.3	0.1	-0.06	0.77	0.88	2.78	3.3	0.006	0.64	0.0	0.04	15.98	0.00	1.801	12.90	0.53	5.9	94.0	0.1	-0.29	0.34	0.78	0.90	2.36	134392	7222	62	3580	234	0	0	logfile
✔	7MVY	24058	2023-11-19	2021-05-15	2.39	3.24	1.97	3.1	0.002	0.39	0.0	0.03	6.61	0.00	2.209	3.28	0.00	0.7	99.3	0.0	-0.54	0.72	0.64	0.92	3.0	0.004	0.62	0.0	0.04	14.21	0.00	1.966	12.50	1.86	4.0	96.0	0.0	1.26	1.65	0.76	0.75	2.15	26555	1694	2	0	0	0	13337	logfile
✔	7ZW1	14991	2023-11-15	2022-05-17	3.7	4.52	3.66	3.9	0.002	0.50	0.0	0.03	17.28	0.00	2.021	7.62	0.16	3.1	96.9	0.0	3.09	0.65	0.80	1.73	3.9	0.002	0.49	0.0	0.03	17.41	0.00	2.023	8.73	0.16	2.9	97.1	0.0	3.13	0.70	0.65	0.80	1.48	11807	760	3	0	0	0	5883	logfile
✔	8HAi	34591	2023-11-16	2022-10-26	4.7	4.54	4.59	4.0	0.003	0.58	0.0	0.03	24.62	0.00	2.249	10.79	0.00	1.5	98.5	0.0	1.74	0.83	0.72	—	4.0	0.003	0.60	0.0	0.03	26.21	0.00	2.122	15.73	0.00	1.9	98.1	0.0	1.97	1.65	0.86	0.80	—	16547	1310	11	294	0	0	0	logfile
✔	8E2J	27838	2023-11-13	2022-08-15	3.44	3.67	3.24	3.4	0.003	0.63	0.0	0.03	15.86	0.01	2.271	3.43	2.70	2.3	97.7	0.0	-0.36	0.44	0.67	0.61	3.4	0.003	0.53	0.0	0.03	17.85	0.00	1.995	13.05	0.00	1.2	98.8	0.0	3.38	1.71	0.45	0.67	1.22	6012	346	4	0	114	0	2694	logfile
✔	7JiL	22345	2023-11-18	2020-07-23	2.8	3.31	—	3.2	0.002	0.48	0.0	0.03	14.71	0.00	1.991	6.76	2.15	9.9	90.0	0.1	-3.96	0.82	0.84	2.44	3.2	0.003	0.60	0.0	0.03	15.81	0.00	2.059	6.79	4.96	11.3	88.7	0.0	-2.32	0.39	0.82	0.86	2.76	132739	5314	54	4327	0	1	0	logfile
✔	7Z1T	14452	2023-11-17	2022-02-25	2.26	2.85	2.32	2.6	0.003	0.55	0.0	0.03	15.04	0.00	2.163	9.13	0.00	1.1	98.9	0.0	3.21	0.75	0.87	2.74	2.6	0.003	0.50	0.0	0.03	15.84	0.00	2.216	5.48	3.28	1.5	98.5	0.0	3.72	1.29	0.67	0.92	3.41	18492	2268	12	0	0	0	0	logfile
✔	6X35	22018	2023-11-14	2020-05-21	4.2	4.14	—	4.2	0.001	0.37	0.0	0.03	8.42	0.00	2.202	3.37	0.05	1.8	98.1	0.0	-1.11	0.52	0.67	—	4.1	0.003	0.64	0.0	0.04	11.49	0.00	2.229	8.53	0.02	3.2	96.8	0.0	1.06	1.69	0.57	0.72	—	111888	14740	16	0	1432	0	0	logfile
✔	8C91	16498	2023-11-14	2023-01-21	4.19	4.74	4.70	4.2	0.001	0.36	0.0	0.03	12.73	0.00	1.896	5.51	0.07	3.8	96.1	0.2	0.39	0.84	0.79	—	4.2	0.005	0.67	0.0	0.04	16.34	0.01	1.963	29.65	0.00	9.5	90.4	0.1	-2.03	0.92	0.86	0.85	—	59110	1860	18	2077	0	0	0	logfile
✔	7Z4H	14497	2023-11-16	2022-03-03	3.49	4.59	3.66	3.8	0.003	0.45	0.0	0.03	13.12	0.00	2.043	9.94	1.25	2.0	98.0	0.0	1.67	0.90	0.83	1.71	3.8	0.003	0.52	0.0	0.03	14.81	0.00	2.158	13.22	0.33	2.6	97.4	0.0	1.63	1.20	0.91	0.86	1.86	13900	1334	4	142	0	0	0	logfile
✔	8C8Y	16495	2023-11-19	2023-01-21	3.03	3.24	3.11	3.1	0.002	0.40	0.0	0.03	13.66	0.00	1.796	4.85	0.00	6.2	93.7	0.1	0.29	0.77	0.81	2.49	3.1	0.006	0.63	0.0	0.04	15.09	0.00	1.994	9.98	0.43	8.0	91.9	0.1	-1.19	0.45	0.80	0.87	2.62	77316	2566	25	2667	0	0	0	logfile
✔	8C94	16501	2023-11-13	2023-01-21	3.8	4.29	4.13	3.8	0.002	0.41	0.0	0.03	13.06	0.00	1.610	7.44	0.00	5.3	94.7	0.0	0.23	0.79	0.79	1.17	3.9	0.006	0.71	0.0	0.04	15.40	0.00	1.973	24.31	0.60	10.1	89.7	0.1	-1.71	1.42	0.81	0.84	1.30	54560	2070	21	1787	0	0	0	logfile
✔	7MVV	24057	2023-11-19	2021-05-15	3.22	4.20	3.24	3.5	0.002	0.36	0.0	0.03	6.43	0.00	2.161	3.07	0.07	1.3	98.7	0.0	-0.66	0.88	0.76	0.50	3.6	0.002	0.53	0.0	0.03	10.98	0.00	2.021	7.18	0.07	3.0	97.0	0.0	2.84	0.96	0.89	0.82	1.13	25764	1609	4	0	0	0	12907	logfile
✔	6NUD	0516	2023-11-17	2019-01-31	3.5	3.80	—	3.7	0.002	0.43	0.0	0.03	11.76	0.00	2.290	4.84	0.29	15.0	83.5	1.5	-5.22	0.53	0.46	0.65	3.7	0.004	0.82	0.0	0.04	16.71	0.00	2.146	15.03	0.24	10.1	89.9	0.0	-2.41	2.02	0.73	0.76	1.77	20831	2420	13	68	1	0	0	logfile
✔	7XD4	33135	2023-11-14	2022-03-26	3.89	4.13	—	3.8	0.003	0.59	0.0	0.03	15.73	0.00	1.880	1.73	0.00	0.0	0.0	0.0	—	0.85	0.73	—	3.8	0.007	0.78	0.0	0.04	17.52	0.01	1.755	18.36	0.00	0.0	0.0	0.0	—	1.84	0.87	0.78	—	9062	0	1	423	28	0	0	logfile
✔	8CZE	27096	2023-11-15	2022-05-24	2.58	3.35	2.72	3.2	0.004	0.55	0.0	0.03	25.95	0.00	2.285	3.74	0.32	1.9	98.1	0.0	2.43	0.86	0.86	3.06	3.2	0.005	0.59	0.0	0.04	26.96	0.00	2.218	3.28	1.11	3.3	96.7	0.0	2.31	0.27	0.85	0.86	3.04	12029	763	10	292	0	0	0	logfile

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