Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oHU	12909	2023-04-26	2021-05-11	3.7	4.68	3.77	3.4	0.008	0.53	1.0	0.03	16.12	0.00	1.811	5.44	0.45	3.5	96.5	0.0	1.01	0.83	0.76	1.33	3.4	0.007	0.58	1.0	0.03	17.35	0.00	1.751	15.03	0.22	7.3	92.6	0.0	-0.57	1.32	0.85	0.81	1.56	127652	4202	29	1840	2	0	54773	logfile
✔	8BiP	16086	2023-04-28	2022-11-02	3.1	3.81	3.14	3.3	0.003	0.54	1.0	0.03	15.18	0.00	1.794	11.10	0.12	4.7	95.3	0.1	-0.06	0.77	0.88	2.78	3.3	0.004	0.59	0.0	0.04	15.91	0.00	1.852	12.25	0.53	5.5	94.4	0.1	-0.16	0.33	0.77	0.90	2.27	134392	7222	62	3580	234	0	0	logfile
✔	6NF8	9362	2023-04-23	2018-12-19	3.48	3.99	—	3.6	0.001	0.39	0.0	0.03	12.76	0.00	1.916	3.08	0.58	10.4	88.3	1.3	-2.53	0.76	0.60	1.16	3.5	0.003	0.64	0.0	0.04	15.73	0.00	2.030	12.29	0.35	5.3	94.7	0.0	-0.24	2.59	0.84	0.79	1.22	65776	5509	32	952	147	0	0	logfile
✔	7MVY	24058	2023-04-27	2021-05-15	2.39	3.24	1.97	3.1	0.002	0.39	0.0	0.03	6.61	0.00	2.209	3.28	0.00	0.7	99.3	0.0	-0.54	0.72	0.64	0.92	3.0	0.004	0.62	0.0	0.04	14.21	0.00	1.966	12.50	1.86	4.0	96.0	0.0	1.26	1.65	0.76	0.75	2.15	26555	1694	2	0	0	0	13337	logfile
✔	7oDS	12846	2023-04-20	2021-04-30	3.1	3.32	—	3.1	0.002	0.40	0.0	0.03	11.26	0.02	2.009	5.03	0.51	1.2	98.8	0.0	0.91	0.78	0.76	2.42	3.1	0.007	0.85	0.0	0.05	15.09	0.01	1.757	13.49	0.41	4.0	96.0	0.0	-0.12	1.70	0.80	0.80	2.27	108339	9371	67	1487	132	0	0	logfile
✔	6W7W	21573	2023-04-27	2020-03-19	3.9	4.46	—	4.0	0.002	0.49	0.0	0.03	15.50	0.00	2.156	10.70	0.12	4.1	95.9	0.0	-2.82	0.91	0.83	1.20	4.0	0.007	0.81	0.0	0.04	16.92	0.01	2.076	28.38	0.82	8.8	91.1	0.1	-1.64	0.59	0.92	0.85	1.38	26883	1047	10	871	0	0	0	logfile
✔	6T9L	10415	2023-04-24	2019-10-28	3.6	3.74	3.53	3.6	0.002	0.47	0.0	0.03	22.54	0.00	2.136	7.11	0.07	1.1	98.9	0.0	-1.63	0.74	0.68	0.82	3.6	0.003	0.61	0.0	0.04	24.88	0.00	2.026	8.92	0.30	2.4	97.6	0.0	1.15	0.81	0.84	0.83	1.11	18157	1532	18	290	8	0	0	logfile
✔	8E2J	27838	2023-04-20	2022-08-15	3.44	3.67	3.24	3.4	0.003	0.63	0.0	0.03	15.86	0.01	2.271	3.43	2.70	2.3	97.7	0.0	-0.36	0.44	0.67	0.61	3.4	0.003	0.53	0.0	0.03	17.85	0.00	1.995	13.05	0.00	1.2	98.8	0.0	3.38	1.71	0.45	0.67	1.22	6012	346	4	0	114	0	2694	logfile
✔	7TCP	25816	2023-04-23	2021-12-27	3.84	3.97	—	3.9	0.002	0.37	0.0	0.03	9.57	0.00	2.327	4.21	1.26	2.8	97.2	0.0	2.66	0.70	0.81	2.29	3.9	0.003	0.50	0.0	0.04	12.75	0.00	2.113	5.39	0.60	3.3	96.7	0.0	2.51	0.36	0.71	0.83	2.44	14992	1912	12	0	12	0	0	logfile
✔	8F6K	28886	2023-04-24	2022-11-16	3.46	3.70	3.47	3.7	0.002	0.50	0.0	0.03	14.25	0.00	1.909	10.84	0.00	6.0	93.5	0.5	-0.45	0.53	0.73	2.16	3.7	0.003	0.57	0.0	0.03	15.85	0.00	1.845	12.09	0.44	6.9	92.7	0.4	1.05	0.51	0.50	0.74	2.25	17298	1132	8	0	4	0	8586	logfile
✔	7Z4H	14497	2023-04-24	2022-03-03	3.49	4.59	3.66	3.8	0.003	0.45	0.0	0.03	13.12	0.00	2.043	9.94	1.25	2.0	98.0	0.0	1.67	0.90	0.83	1.71	3.8	0.003	0.55	0.0	0.04	14.92	0.00	2.146	13.75	0.25	2.3	97.7	0.0	1.41	1.66	0.91	0.86	1.89	13900	1334	4	142	0	0	0	logfile
✔	6NUD	0516	2023-04-25	2019-01-31	3.5	3.80	—	3.7	0.002	0.43	0.0	0.03	11.76	0.00	2.290	4.84	0.29	15.0	83.5	1.5	-5.22	0.53	0.46	0.65	3.7	0.004	0.82	0.0	0.04	16.71	0.00	2.146	15.03	0.24	10.1	89.9	0.0	-2.41	2.02	0.73	0.76	1.77	20831	2420	13	68	1	0	0	logfile
✔	7SYN	25534	2023-04-29	2021-11-25	4.0	3.26	3.82	3.2	0.002	0.49	0.0	0.03	15.18	0.00	2.115	9.69	0.00	4.8	95.2	0.0	-0.83	0.64	0.72	—	3.2	0.005	0.69	0.0	0.04	16.77	0.01	1.998	13.22	0.62	8.8	91.2	0.0	-1.35	1.04	0.65	0.74	—	78761	4891	38	1859	2	0	0	logfile
✔	6NEQ	9358	2023-04-23	2018-12-18	3.32	3.85	—	3.5	0.001	0.37	0.0	0.03	12.81	0.00	1.949	3.29	0.35	10.3	88.1	1.6	-2.42	0.69	0.51	0.07	3.5	0.004	0.68	0.0	0.04	16.33	0.00	2.089	13.57	0.39	5.4	94.5	0.1	-0.36	2.01	0.85	0.85	1.39	65776	5509	32	952	147	0	0	logfile
✔	7USM	26739	2023-04-22	2022-04-25	2.7	2.25	—	1.5	0.003	0.63	0.0	0.04	12.76	0.01	2.109	6.35	0.00	3.9	96.1	0.0	-0.89	0.72	0.68	2.45	1.6	0.003	0.69	0.0	0.04	16.30	0.00	2.109	9.21	1.75	3.8	96.2	0.0	-0.43	0.48	0.73	0.72	2.18	11893	1521	5	0	15	0	0	logfile
✔	7ZR5	14883	2023-04-24	2022-05-03	3.9	2.55	4.11	2.3	0.009	1.02	1.0	0.04	16.75	0.01	2.119	9.63	0.26	9.1	90.3	0.5	-1.57	0.70	0.70	1.62	2.3	0.003	0.68	0.0	0.04	17.65	0.00	2.113	9.20	0.57	9.1	90.6	0.3	-1.39	0.35	0.71	0.70	1.29	17518	2145	7	0	2	0	0	logfile
✔	7Z38	14473	2023-04-23	2022-03-01	3.16	3.33	3.14	3.3	0.005	0.60	0.0	0.04	18.55	0.00	2.085	10.69	0.19	5.9	94.1	0.1	-0.56	0.75	0.82	2.99	3.3	0.003	0.55	0.0	0.04	18.63	0.00	2.083	10.02	0.13	5.7	94.3	0.1	-0.49	0.33	0.74	0.83	2.76	14258	1740	6	0	4	0	0	logfile
✔	7S4V	24835	2023-04-22	2021-09-09	3.28	3.87	—	3.7	0.003	0.54	0.0	0.04	17.44	0.00	2.202	4.81	0.00	5.0	95.0	0.0	-1.46	0.80	0.80	2.24	3.7	0.004	0.57	0.0	0.04	18.53	0.00	2.217	5.54	0.00	5.0	95.0	0.0	-0.71	0.56	0.85	0.87	2.01	12215	1122	4	145	0	0	0	logfile
✔	7ZNU	14814	2023-04-21	2022-04-22	4.0	4.28	4.04	4.1	0.003	0.64	0.0	0.04	15.16	0.00	2.173	9.52	0.00	3.2	96.7	0.2	1.40	0.69	0.74	—	4.1	0.003	0.82	0.0	0.04	17.27	0.00	2.197	13.97	0.43	5.2	94.7	0.1	1.06	0.97	0.71	0.77	—	8730	1112	4	0	4	0	0	logfile
✔	7UN3	26612	2023-04-21	2022-04-08	3.5	3.80	3.51	3.8	0.003	0.61	0.0	0.04	13.63	0.01	1.936	13.52	0.00	5.3	94.7	0.0	-0.87	0.63	0.63	1.49	3.8	0.003	0.70	0.0	0.04	16.63	0.00	2.187	13.84	0.47	4.7	95.3	0.0	-0.67	1.15	0.66	0.69	1.84	9423	1164	4	0	0	0	0	logfile

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