Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RZT	24777	2022-12-11	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.0	0.003	0.32	0.0	0.03	15.54	0.00	2.332	5.44	0.35	0.0	100.0	0.0	6.21	0.24	0.80	0.83	3.03	2451	324	6	0	0	0	0	logfile
✔	7TTU	26124	2022-12-15	2022-02-01	3.0	2.90	—	3.1	0.002	0.46	0.0	0.03	14.34	0.00	2.175	4.28	0.00	3.6	96.4	0.0	-1.25	0.62	0.66	1.12	3.0	0.006	0.75	0.0	0.04	16.30	0.01	2.014	4.87	4.45	5.7	94.3	0.0	-1.95	0.85	0.76	0.88	2.58	80724	2661	27	2795	0	0	0	logfile
✔	7LQF	23484	2022-12-11	2021-02-13	3.8	3.13	—	4.0	0.016	1.46	0.0	0.03	18.37	0.00	2.258	22.81	2.08	0.0	100.0	0.0	-4.77	0.59	0.78	4.63	3.2	0.155	6.38	244.0	0.42	26.01	0.03	1.685	217.36	4.43	66.8	30.1	3.1	-9.48	1.76	0.69	0.86	2.76	5376	512	64	0	0	0	0	logfile
✔	6ZLG	11265	2022-12-18	2020-06-30	3.0	3.18	—	3.1	0.003	0.44	0.0	0.03	16.50	0.00	2.180	7.56	4.15	0.1	99.9	0.0	1.26	0.80	0.87	2.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	33008	4072	24	0	0	0	0	logfile
✔	7RZQ	24774	2022-12-11	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.003	0.30	0.0	0.03	15.08	0.00	2.337	5.30	0.36	0.0	100.0	0.0	5.90	0.30	0.82	0.83	1.87	2421	322	6	0	0	0	0	logfile
✔	7TAN	25777	2022-12-12	2021-12-21	3.0	2.95	—	3.1	0.003	0.47	0.0	0.03	27.32	0.00	2.287	3.25	0.00	2.8	97.2	0.0	2.18	0.82	0.85	2.22	3.1	0.004	0.52	0.0	0.03	27.86	0.00	2.211	2.79	0.47	1.9	98.1	0.0	2.21	0.33	0.84	0.87	1.98	12119	768	12	294	0	0	0	logfile
✔	7TCP	25816	2022-12-13	2021-12-27	3.84	3.97	—	3.9	0.002	0.37	0.0	0.03	9.57	0.00	2.327	4.21	1.26	2.8	97.2	0.0	2.66	0.70	0.81	2.29	3.9	0.002	0.48	0.0	0.04	12.83	0.00	2.136	4.68	0.20	2.6	97.4	0.0	2.73	0.36	0.71	0.83	2.13	14992	1912	12	0	12	0	0	logfile
✔	7E9C	31029	2022-12-15	2021-03-04	3.5	4.28	3.62	4.0	0.003	0.58	0.0	0.03	26.96	0.00	2.221	12.83	0.14	3.3	96.7	0.0	0.16	0.78	0.69	0.28	4.0	0.004	0.69	0.0	0.04	28.66	0.01	2.126	18.84	1.11	4.9	95.1	0.0	-0.16	1.93	0.82	0.78	0.87	12338	898	11	260	0	0	0	logfile
✔	7MVV	24057	2022-12-15	2021-05-15	3.22	4.20	3.24	3.5	0.002	0.36	0.0	0.03	6.43	0.00	2.161	3.07	0.07	1.3	98.7	0.0	-0.66	0.88	0.76	0.50	3.6	0.003	0.52	0.0	0.03	11.12	0.00	2.027	7.30	0.07	3.4	96.6	0.0	2.79	0.96	0.90	0.83	1.13	25764	1609	4	0	0	0	12907	logfile
✔	7MVU	24056	2022-12-15	2021-05-15	3.77	4.87	3.73	4.0	0.002	0.36	0.0	0.03	6.38	0.00	2.187	3.55	0.00	1.1	98.9	0.0	-0.33	0.85	0.73	0.19	4.1	0.002	0.58	0.0	0.03	11.85	0.00	1.937	10.96	0.22	2.9	97.1	0.0	2.75	2.06	0.88	0.82	0.36	25645	1604	2	0	0	0	12841	logfile
✔	7MVY	24058	2022-12-15	2021-05-15	2.39	3.24	1.97	3.1	0.002	0.39	0.0	0.03	6.61	0.00	2.209	3.31	0.00	0.7	99.3	0.0	-0.54	0.72	0.64	0.92	3.0	0.005	0.67	0.0	0.04	14.14	0.00	1.958	13.67	1.65	3.9	96.1	0.0	0.95	1.65	0.76	0.74	2.24	26555	1694	2	0	0	0	13337	logfile
✔	7MVZ	24059	2022-12-15	2021-05-15	2.81	3.64	2.78	3.1	0.002	0.48	0.0	0.03	7.60	0.00	2.206	2.84	0.00	1.6	98.4	0.0	-1.11	0.80	0.67	0.58	3.2	0.003	0.67	0.0	0.04	14.24	0.00	1.974	15.48	2.06	3.5	96.5	0.0	0.96	1.86	0.84	0.76	1.37	26733	1707	3	0	0	0	13421	logfile
✔	7oDE	12826	2022-12-16	2021-04-29	2.84	2.98	2.78	2.9	0.003	0.39	0.0	0.03	13.11	0.01	1.949	3.04	3.32	2.0	98.0	0.0	-0.12	0.82	0.80	3.61	2.9	0.005	0.57	0.0	0.04	14.39	0.00	1.890	5.83	2.35	3.3	96.7	0.0	-0.06	0.54	0.85	0.84	3.38	92524	1761	16	1990	0	0	35996	logfile
✔	7QiX	14002	2022-12-16	2021-12-16	2.53	2.44	2.40	2.4	0.008	0.73	0.0	0.03	12.09	0.02	1.788	2.06	0.08	0.9	99.1	0.0	0.25	0.74	0.86	5.47	2.4	0.005	0.76	0.0	0.04	14.67	0.01	1.617	3.74	0.68	1.3	98.7	0.0	0.87	0.54	0.76	0.88	4.88	83517	2911	42	1110	81	570	35777	logfile
✔	7RZV	24779	2022-12-11	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.36	0.0	0.03	15.90	0.00	2.235	5.24	0.34	0.0	100.0	0.0	5.91	0.88	0.83	0.83	1.88	2562	339	6	0	0	0	0	logfile
✔	7TTW	26125	2022-12-15	2022-02-02	2.9	2.35	2.83	2.8	0.003	0.54	0.0	0.03	15.04	0.00	2.065	3.80	0.04	4.3	95.7	0.0	-2.03	0.71	0.80	3.36	2.8	0.002	0.55	0.0	0.03	15.88	0.00	2.020	4.41	3.37	4.3	95.7	0.0	-1.64	0.25	0.72	0.85	2.87	80853	2661	27	2801	0	0	0	logfile
✔	7WiJ	32531	2022-12-12	2022-01-03	3.17	3.08	3.01	3.2	0.002	0.50	0.0	0.03	14.49	0.00	2.243	4.92	0.00	0.4	99.6	0.0	2.75	0.70	0.85	1.82	3.2	0.004	0.56	0.0	0.04	15.62	0.00	2.266	4.80	0.08	1.0	99.0	0.0	3.19	0.26	0.71	0.88	1.96	12396	1602	6	0	0	0	0	logfile
✔	7V9C	31815	2022-12-14	2021-08-24	4.5	3.01	4.36	3.5	0.002	0.44	0.0	0.03	28.95	0.00	2.240	8.56	1.27	5.0	94.1	0.9	-0.37	0.60	0.38	—	2.9	0.004	0.75	0.0	0.04	29.43	0.01	2.091	22.31	0.16	5.4	94.5	0.1	0.35	1.77	0.73	0.57	—	23228	1518	18	546	0	0	0	logfile
✔	8ETC	24398	2022-12-17	2022-10-16	3.1	3.22	—	3.1	0.002	0.53	0.0	0.03	16.07	0.00	2.067	10.50	0.70	3.9	95.9	0.2	-0.30	0.65	0.60	0.73	3.1	0.006	0.75	0.0	0.04	17.10	0.01	1.938	16.59	0.68	5.4	94.5	0.1	-0.49	0.97	0.72	0.72	1.82	95651	6128	43	2287	1	0	0	logfile
✔	6NF8	9362	2022-12-13	2018-12-19	3.48	3.99	—	3.6	0.001	0.39	0.0	0.03	12.76	0.00	1.916	3.14	0.58	10.4	88.3	1.3	-2.53	0.76	0.60	1.16	3.5	0.003	0.67	0.0	0.04	15.80	0.00	2.025	13.28	0.31	5.8	94.2	0.0	-0.26	2.60	0.84	0.79	1.18	65776	5509	32	952	147	0	0	logfile

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