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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7oHU | 12909 | 2023-04-26 | 2021-05-11 | 3.7 | 4.68 | 3.77 | 3.4 | 0.008 | 0.53 | 1.0 | 0.03 | 16.12 | 0.00 | 1.811 | 5.44 | 0.45 | 3.5 | 96.5 | 0.0 | 1.01 | 0.83 | 0.76 | 1.33 | 3.4 | 0.007 | 0.58 | 1.0 | 0.03 | 17.35 | 0.00 | 1.751 | 15.03 | 0.22 | 7.3 | 92.6 | 0.0 | -0.57 | 1.32 | 0.85 | 0.81 | 1.56 | 127652 | 4202 | 29 | 1840 | 2 | 0 | 54773 | logfile |
✔ | 8BiP | 16086 | 2023-04-28 | 2022-11-02 | 3.1 | 3.81 | 3.14 | 3.3 | 0.003 | 0.54 | 1.0 | 0.03 | 15.18 | 0.00 | 1.794 | 11.10 | 0.12 | 4.7 | 95.3 | 0.1 | -0.06 | 0.77 | 0.88 | 2.78 | 3.3 | 0.004 | 0.59 | 0.0 | 0.04 | 15.91 | 0.00 | 1.852 | 12.25 | 0.53 | 5.5 | 94.4 | 0.1 | -0.16 | 0.33 | 0.77 | 0.90 | 2.27 | 134392 | 7222 | 62 | 3580 | 234 | 0 | 0 | logfile |
✔ | 6NF8 | 9362 | 2023-04-23 | 2018-12-19 | 3.48 | 3.99 | — | 3.6 | 0.001 | 0.39 | 0.0 | 0.03 | 12.76 | 0.00 | 1.916 | 3.08 | 0.58 | 10.4 | 88.3 | 1.3 | -2.53 | 0.76 | 0.60 | 1.16 | 3.5 | 0.003 | 0.64 | 0.0 | 0.04 | 15.73 | 0.00 | 2.030 | 12.29 | 0.35 | 5.3 | 94.7 | 0.0 | -0.24 | 2.59 | 0.84 | 0.79 | 1.22 | 65776 | 5509 | 32 | 952 | 147 | 0 | 0 | logfile |
✔ | 7MVY | 24058 | 2023-04-27 | 2021-05-15 | 2.39 | 3.24 | 1.97 | 3.1 | 0.002 | 0.39 | 0.0 | 0.03 | 6.61 | 0.00 | 2.209 | 3.28 | 0.00 | 0.7 | 99.3 | 0.0 | -0.54 | 0.72 | 0.64 | 0.92 | 3.0 | 0.004 | 0.62 | 0.0 | 0.04 | 14.21 | 0.00 | 1.966 | 12.50 | 1.86 | 4.0 | 96.0 | 0.0 | 1.26 | 1.65 | 0.76 | 0.75 | 2.15 | 26555 | 1694 | 2 | 0 | 0 | 0 | 13337 | logfile |
✔ | 7oDS | 12846 | 2023-04-20 | 2021-04-30 | 3.1 | 3.32 | — | 3.1 | 0.002 | 0.40 | 0.0 | 0.03 | 11.26 | 0.02 | 2.009 | 5.03 | 0.51 | 1.2 | 98.8 | 0.0 | 0.91 | 0.78 | 0.76 | 2.42 | 3.1 | 0.007 | 0.85 | 0.0 | 0.05 | 15.09 | 0.01 | 1.757 | 13.49 | 0.41 | 4.0 | 96.0 | 0.0 | -0.12 | 1.70 | 0.80 | 0.80 | 2.27 | 108339 | 9371 | 67 | 1487 | 132 | 0 | 0 | logfile |
✔ | 6W7W | 21573 | 2023-04-27 | 2020-03-19 | 3.9 | 4.46 | — | 4.0 | 0.002 | 0.49 | 0.0 | 0.03 | 15.50 | 0.00 | 2.156 | 10.70 | 0.12 | 4.1 | 95.9 | 0.0 | -2.82 | 0.91 | 0.83 | 1.20 | 4.0 | 0.007 | 0.81 | 0.0 | 0.04 | 16.92 | 0.01 | 2.076 | 28.38 | 0.82 | 8.8 | 91.1 | 0.1 | -1.64 | 0.59 | 0.92 | 0.85 | 1.38 | 26883 | 1047 | 10 | 871 | 0 | 0 | 0 | logfile |
✔ | 6T9L | 10415 | 2023-04-24 | 2019-10-28 | 3.6 | 3.74 | 3.53 | 3.6 | 0.002 | 0.47 | 0.0 | 0.03 | 22.54 | 0.00 | 2.136 | 7.11 | 0.07 | 1.1 | 98.9 | 0.0 | -1.63 | 0.74 | 0.68 | 0.82 | 3.6 | 0.003 | 0.61 | 0.0 | 0.04 | 24.88 | 0.00 | 2.026 | 8.92 | 0.30 | 2.4 | 97.6 | 0.0 | 1.15 | 0.81 | 0.84 | 0.83 | 1.11 | 18157 | 1532 | 18 | 290 | 8 | 0 | 0 | logfile |
✔ | 8E2J | 27838 | 2023-04-20 | 2022-08-15 | 3.44 | 3.67 | 3.24 | 3.4 | 0.003 | 0.63 | 0.0 | 0.03 | 15.86 | 0.01 | 2.271 | 3.43 | 2.70 | 2.3 | 97.7 | 0.0 | -0.36 | 0.44 | 0.67 | 0.61 | 3.4 | 0.003 | 0.53 | 0.0 | 0.03 | 17.85 | 0.00 | 1.995 | 13.05 | 0.00 | 1.2 | 98.8 | 0.0 | 3.38 | 1.71 | 0.45 | 0.67 | 1.22 | 6012 | 346 | 4 | 0 | 114 | 0 | 2694 | logfile |
✔ | 7TCP | 25816 | 2023-04-23 | 2021-12-27 | 3.84 | 3.97 | — | 3.9 | 0.002 | 0.37 | 0.0 | 0.03 | 9.57 | 0.00 | 2.327 | 4.21 | 1.26 | 2.8 | 97.2 | 0.0 | 2.66 | 0.70 | 0.81 | 2.29 | 3.9 | 0.003 | 0.50 | 0.0 | 0.04 | 12.75 | 0.00 | 2.113 | 5.39 | 0.60 | 3.3 | 96.7 | 0.0 | 2.51 | 0.36 | 0.71 | 0.83 | 2.44 | 14992 | 1912 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 8F6K | 28886 | 2023-04-24 | 2022-11-16 | 3.46 | 3.70 | 3.47 | 3.7 | 0.002 | 0.50 | 0.0 | 0.03 | 14.25 | 0.00 | 1.909 | 10.84 | 0.00 | 6.0 | 93.5 | 0.5 | -0.45 | 0.53 | 0.73 | 2.16 | 3.7 | 0.003 | 0.57 | 0.0 | 0.03 | 15.85 | 0.00 | 1.845 | 12.09 | 0.44 | 6.9 | 92.7 | 0.4 | 1.05 | 0.51 | 0.50 | 0.74 | 2.25 | 17298 | 1132 | 8 | 0 | 4 | 0 | 8586 | logfile |
✔ | 7Z4H | 14497 | 2023-04-24 | 2022-03-03 | 3.49 | 4.59 | 3.66 | 3.8 | 0.003 | 0.45 | 0.0 | 0.03 | 13.12 | 0.00 | 2.043 | 9.94 | 1.25 | 2.0 | 98.0 | 0.0 | 1.67 | 0.90 | 0.83 | 1.71 | 3.8 | 0.003 | 0.55 | 0.0 | 0.04 | 14.92 | 0.00 | 2.146 | 13.75 | 0.25 | 2.3 | 97.7 | 0.0 | 1.41 | 1.66 | 0.91 | 0.86 | 1.89 | 13900 | 1334 | 4 | 142 | 0 | 0 | 0 | logfile |
✔ | 6NUD | 0516 | 2023-04-25 | 2019-01-31 | 3.5 | 3.80 | — | 3.7 | 0.002 | 0.43 | 0.0 | 0.03 | 11.76 | 0.00 | 2.290 | 4.84 | 0.29 | 15.0 | 83.5 | 1.5 | -5.22 | 0.53 | 0.46 | 0.65 | 3.7 | 0.004 | 0.82 | 0.0 | 0.04 | 16.71 | 0.00 | 2.146 | 15.03 | 0.24 | 10.1 | 89.9 | 0.0 | -2.41 | 2.02 | 0.73 | 0.76 | 1.77 | 20831 | 2420 | 13 | 68 | 1 | 0 | 0 | logfile |
✔ | 7SYN | 25534 | 2023-04-29 | 2021-11-25 | 4.0 | 3.26 | 3.82 | 3.2 | 0.002 | 0.49 | 0.0 | 0.03 | 15.18 | 0.00 | 2.115 | 9.69 | 0.00 | 4.8 | 95.2 | 0.0 | -0.83 | 0.64 | 0.72 | — | 3.2 | 0.005 | 0.69 | 0.0 | 0.04 | 16.77 | 0.01 | 1.998 | 13.22 | 0.62 | 8.8 | 91.2 | 0.0 | -1.35 | 1.04 | 0.65 | 0.74 | — | 78761 | 4891 | 38 | 1859 | 2 | 0 | 0 | logfile |
✔ | 6NEQ | 9358 | 2023-04-23 | 2018-12-18 | 3.32 | 3.85 | — | 3.5 | 0.001 | 0.37 | 0.0 | 0.03 | 12.81 | 0.00 | 1.949 | 3.29 | 0.35 | 10.3 | 88.1 | 1.6 | -2.42 | 0.69 | 0.51 | 0.07 | 3.5 | 0.004 | 0.68 | 0.0 | 0.04 | 16.33 | 0.00 | 2.089 | 13.57 | 0.39 | 5.4 | 94.5 | 0.1 | -0.36 | 2.01 | 0.85 | 0.85 | 1.39 | 65776 | 5509 | 32 | 952 | 147 | 0 | 0 | logfile |
✔ | 7USM | 26739 | 2023-04-22 | 2022-04-25 | 2.7 | 2.25 | — | 1.5 | 0.003 | 0.63 | 0.0 | 0.04 | 12.76 | 0.01 | 2.109 | 6.35 | 0.00 | 3.9 | 96.1 | 0.0 | -0.89 | 0.72 | 0.68 | 2.45 | 1.6 | 0.003 | 0.69 | 0.0 | 0.04 | 16.30 | 0.00 | 2.109 | 9.21 | 1.75 | 3.8 | 96.2 | 0.0 | -0.43 | 0.48 | 0.73 | 0.72 | 2.18 | 11893 | 1521 | 5 | 0 | 15 | 0 | 0 | logfile |
✔ | 7ZR5 | 14883 | 2023-04-24 | 2022-05-03 | 3.9 | 2.55 | 4.11 | 2.3 | 0.009 | 1.02 | 1.0 | 0.04 | 16.75 | 0.01 | 2.119 | 9.63 | 0.26 | 9.1 | 90.3 | 0.5 | -1.57 | 0.70 | 0.70 | 1.62 | 2.3 | 0.003 | 0.68 | 0.0 | 0.04 | 17.65 | 0.00 | 2.113 | 9.20 | 0.57 | 9.1 | 90.6 | 0.3 | -1.39 | 0.35 | 0.71 | 0.70 | 1.29 | 17518 | 2145 | 7 | 0 | 2 | 0 | 0 | logfile |
✔ | 7Z38 | 14473 | 2023-04-23 | 2022-03-01 | 3.16 | 3.33 | 3.14 | 3.3 | 0.005 | 0.60 | 0.0 | 0.04 | 18.55 | 0.00 | 2.085 | 10.69 | 0.19 | 5.9 | 94.1 | 0.1 | -0.56 | 0.75 | 0.82 | 2.99 | 3.3 | 0.003 | 0.55 | 0.0 | 0.04 | 18.63 | 0.00 | 2.083 | 10.02 | 0.13 | 5.7 | 94.3 | 0.1 | -0.49 | 0.33 | 0.74 | 0.83 | 2.76 | 14258 | 1740 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 7S4V | 24835 | 2023-04-22 | 2021-09-09 | 3.28 | 3.87 | — | 3.7 | 0.003 | 0.54 | 0.0 | 0.04 | 17.44 | 0.00 | 2.202 | 4.81 | 0.00 | 5.0 | 95.0 | 0.0 | -1.46 | 0.80 | 0.80 | 2.24 | 3.7 | 0.004 | 0.57 | 0.0 | 0.04 | 18.53 | 0.00 | 2.217 | 5.54 | 0.00 | 5.0 | 95.0 | 0.0 | -0.71 | 0.56 | 0.85 | 0.87 | 2.01 | 12215 | 1122 | 4 | 145 | 0 | 0 | 0 | logfile |
✔ | 7ZNU | 14814 | 2023-04-21 | 2022-04-22 | 4.0 | 4.28 | 4.04 | 4.1 | 0.003 | 0.64 | 0.0 | 0.04 | 15.16 | 0.00 | 2.173 | 9.52 | 0.00 | 3.2 | 96.7 | 0.2 | 1.40 | 0.69 | 0.74 | — | 4.1 | 0.003 | 0.82 | 0.0 | 0.04 | 17.27 | 0.00 | 2.197 | 13.97 | 0.43 | 5.2 | 94.7 | 0.1 | 1.06 | 0.97 | 0.71 | 0.77 | — | 8730 | 1112 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7UN3 | 26612 | 2023-04-21 | 2022-04-08 | 3.5 | 3.80 | 3.51 | 3.8 | 0.003 | 0.61 | 0.0 | 0.04 | 13.63 | 0.01 | 1.936 | 13.52 | 0.00 | 5.3 | 94.7 | 0.0 | -0.87 | 0.63 | 0.63 | 1.49 | 3.8 | 0.003 | 0.70 | 0.0 | 0.04 | 16.63 | 0.00 | 2.187 | 13.84 | 0.47 | 4.7 | 95.3 | 0.0 | -0.67 | 1.15 | 0.66 | 0.69 | 1.84 | 9423 | 1164 | 4 | 0 | 0 | 0 | 0 | logfile |