Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6W7W	21573	2023-08-19	2020-03-19	3.9	4.46	—	4.0	0.002	0.49	0.0	0.03	15.50	0.00	2.156	10.70	0.12	4.1	95.9	0.0	-2.82	0.91	0.83	1.20	4.0	0.007	0.81	0.0	0.04	16.92	0.01	2.076	28.38	0.82	8.8	91.1	0.1	-1.64	0.59	0.92	0.85	1.38	26883	1047	10	871	0	0	0	logfile
✔	6W77	21569	2023-08-26	2020-03-18	3.6	3.44	—	3.3	0.002	0.53	0.0	0.03	14.96	0.00	2.084	9.33	0.12	6.1	93.7	0.2	-3.22	0.73	0.67	0.91	3.3	0.007	0.92	0.0	0.05	16.99	0.01	1.829	19.25	0.50	12.0	87.8	0.2	-2.57	2.05	0.77	0.72	0.90	47940	1949	18	1519	0	0	0	logfile
✔	8FKQ	29253	2023-08-23	2022-12-21	2.76	3.11	2.87	3.0	0.003	0.55	0.0	0.03	13.51	0.00	2.001	1.93	0.02	1.1	98.9	0.0	1.47	0.77	0.82	3.34	3.0	0.007	0.64	0.0	0.04	14.56	0.01	1.956	5.69	1.26	2.1	97.9	0.0	0.88	0.41	0.80	0.88	3.18	93805	6882	52	1784	53	0	0	logfile
✔	6L54	0837	2023-08-17	2019-10-22	3.43	3.58	—	3.5	0.002	0.49	0.0	0.03	7.60	0.00	1.978	61.71	0.79	8.8	91.2	0.0	-3.87	0.77	0.72	1.74	3.5	0.002	0.61	0.0	0.04	13.82	0.00	1.920	66.76	0.39	10.3	89.7	0.0	-1.37	0.76	0.80	0.77	1.44	20387	2608	3	0	2	0	857	logfile
✔	7YGC	33815	2023-08-10	2022-07-11	2.65	3.28	2.77	2.9	0.007	0.50	0.0	0.03	14.76	0.00	1.778	12.79	0.00	0.0	0.0	0.0	—	0.90	0.83	—	2.9	0.004	0.56	0.0	0.03	15.40	0.00	1.934	13.86	0.00	0.0	0.0	0.0	—	1.48	0.92	0.90	—	8690	0	3	407	6	0	0	logfile
✔	7Z4C	14493	2023-08-15	2022-03-03	3.87	5.00	3.91	4.1	0.003	0.45	0.0	0.03	15.32	0.00	2.232	8.05	2.06	2.5	97.5	0.0	1.06	0.91	0.83	1.82	4.1	0.003	0.58	0.0	0.04	16.67	0.00	2.163	12.60	0.08	2.9	97.1	0.0	1.05	0.96	0.91	0.84	1.31	14180	1357	4	148	0	0	0	logfile
✔	6W6K	21558	2023-08-26	2020-03-17	3.6	3.84	—	3.7	0.002	0.47	0.0	0.03	14.66	0.00	2.113	10.37	0.00	6.9	93.1	0.0	-4.28	0.70	0.59	0.52	3.7	0.007	1.03	0.0	0.05	18.53	0.01	1.969	31.93	1.04	16.9	83.0	0.1	-3.84	1.46	0.76	0.69	0.71	46934	1873	19	1534	1	0	0	logfile
✔	7MVV	24057	2023-08-18	2021-05-15	3.22	4.20	3.24	3.5	0.002	0.36	0.0	0.03	6.43	0.00	2.161	3.07	0.07	1.3	98.7	0.0	-0.66	0.88	0.76	0.50	3.6	0.002	0.53	0.0	0.03	10.98	0.00	2.021	7.18	0.07	3.0	97.0	0.0	2.84	0.96	0.89	0.82	1.13	25764	1609	4	0	0	0	12907	logfile
✔	7M4V	23667	2023-08-21	2021-03-22	2.54	2.36	—	2.4	0.006	0.60	0.0	0.03	15.18	0.02	1.808	2.89	0.00	2.3	97.6	0.2	0.82	0.71	0.79	4.43	2.4	0.004	0.73	0.0	0.04	15.97	0.01	1.766	3.92	1.54	2.9	97.0	0.1	0.02	1.72	0.74	0.87	4.35	86404	3128	48	2847	162	802	0	logfile
✔	7XHT	33198	2023-08-10	2022-04-10	2.55	2.77	2.54	2.8	0.003	0.68	0.0	0.03	14.64	0.00	2.014	6.29	0.00	1.8	98.2	0.0	0.35	0.69	0.85	5.47	2.8	0.002	0.52	0.0	0.03	15.90	0.00	1.997	6.66	1.75	2.0	98.0	0.0	0.73	0.35	0.65	0.85	4.80	7839	395	6	220	3	0	0	logfile
✔	6SiH	10210	2023-08-24	2019-08-09	4.7	5.01	—	4.7	0.005	0.54	0.0	0.03	12.61	0.00	1.931	8.52	0.00	5.9	94.1	0.0	-1.62	0.89	0.79	—	4.7	0.002	0.59	0.0	0.04	13.34	0.00	2.050	11.19	0.00	5.0	95.0	0.0	0.99	1.58	0.90	0.82	—	37310	4880	10	0	0	0	0	logfile
✔	7ZW1	14991	2023-08-12	2022-05-17	3.7	4.52	3.66	3.9	0.002	0.50	0.0	0.03	17.28	0.00	2.021	7.62	0.16	3.1	96.9	0.0	3.09	0.65	0.80	1.73	3.9	0.002	0.49	0.0	0.03	17.41	0.00	2.023	8.73	0.16	2.9	97.1	0.0	3.13	0.70	0.65	0.80	1.48	11807	760	3	0	0	0	5883	logfile
✔	8G0L	29657	2023-08-10	2023-01-31	3.39	4.48	3.47	3.9	0.003	0.48	0.0	0.03	16.92	0.00	2.289	5.58	0.10	2.0	98.0	0.0	3.32	0.93	0.90	2.06	3.9	0.002	0.48	0.0	0.03	17.10	0.00	2.248	5.69	0.10	2.0	98.0	0.0	3.31	0.18	0.93	0.90	2.07	8872	1088	3	0	1	0	0	logfile
✔	6HD7	0202	2023-08-24	2018-08-17	3.4	3.54	—	3.3	0.002	0.43	0.0	0.03	14.93	0.00	0.345	24.96	0.08	11.1	87.1	1.9	-3.26	0.66	0.65	0.74	3.3	0.007	0.78	0.0	0.04	17.87	0.00	2.034	18.45	0.79	7.7	91.9	0.4	-1.42	1.57	0.76	0.88	1.83	141153	7514	52	3767	234	0	0	logfile
✔	7TCP	25816	2023-08-13	2021-12-27	3.84	3.97	—	3.9	0.002	0.37	0.0	0.03	9.57	0.00	2.327	4.21	1.26	2.8	97.2	0.0	2.66	0.70	0.81	2.29	3.9	0.003	0.50	0.0	0.04	12.75	0.00	2.113	5.39	0.60	3.3	96.7	0.0	2.51	0.36	0.71	0.83	2.44	14992	1912	12	0	12	0	0	logfile
✔	8HAJ	34592	2023-08-14	2022-10-26	4.8	4.66	4.63	3.6	0.003	0.60	0.0	0.03	24.95	0.00	2.213	11.34	0.00	2.3	97.7	0.0	1.21	0.88	0.76	—	3.6	0.004	0.62	0.0	0.04	26.56	0.00	2.114	18.46	0.00	2.8	97.2	0.0	1.45	1.61	0.90	0.79	—	17214	1305	11	326	0	0	0	logfile
✔	8F6K	28886	2023-08-14	2022-11-16	3.46	3.70	3.47	3.7	0.002	0.50	0.0	0.03	14.25	0.00	1.909	10.84	0.00	6.0	93.5	0.5	-0.45	0.53	0.73	2.16	3.7	0.003	0.57	0.0	0.03	15.85	0.00	1.845	12.09	0.44	6.9	92.7	0.4	1.05	0.51	0.50	0.74	2.25	17298	1132	8	0	4	0	8586	logfile
✔	7Z1T	14452	2023-08-15	2022-02-25	2.26	2.85	2.32	2.6	0.003	0.55	0.0	0.03	15.04	0.00	2.163	9.13	0.00	1.1	98.9	0.0	3.21	0.75	0.87	2.74	2.6	0.003	0.50	0.0	0.03	15.84	0.00	2.216	5.48	3.28	1.5	98.5	0.0	3.72	1.29	0.67	0.92	3.41	18492	2268	12	0	0	0	0	logfile
✔	7JGG	22326	2023-08-09	2020-07-19	4.88	8.00	—	7.7	0.002	0.46	0.0	0.03	13.22	0.00	1.988	54.49	0.00	3.3	96.5	0.2	1.67	0.66	0.64	—	7.5	0.002	0.47	0.0	0.03	12.80	0.00	1.958	77.81	0.00	4.3	95.7	0.0	1.53	1.24	0.66	0.69	—	4210	506	1	0	0	0	28	logfile
✔	6NTS	0510	2023-08-11	2019-01-30	3.63	4.31	2.98	3.6	0.016	0.51	0.0	0.03	13.23	0.00	1.917	2.06	0.00	3.8	96.2	0.0	-2.08	0.89	0.77	0.59	3.6	0.002	0.62	0.0	0.04	15.01	0.00	2.074	8.23	0.00	2.2	97.8	0.0	0.88	2.31	0.92	0.85	1.06	9956	1240	5	0	3	0	0	logfile

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