Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LWL	23549	2023-08-17	2021-03-01	2.84	3.04	—	3.0	0.013	1.79	2.0	0.10	13.07	0.01	2.505	0.04	0.53	4.2	95.6	0.2	-0.78	0.72	0.83	4.07	3.0	0.003	0.61	0.0	0.05	15.23	0.00	2.144	5.60	1.33	2.7	97.2	0.0	0.37	0.63	0.72	0.84	3.28	23847	3003	6	0	30	0	0	logfile
✔	8B7V	15903	2023-08-11	2022-10-03	3.0	3.71	2.99	3.4	0.015	1.80	8.0	0.11	15.92	0.02	2.409	0.05	1.76	2.6	96.7	0.6	-0.16	0.76	0.73	6.06	3.4	0.005	0.66	0.0	0.04	16.11	0.00	2.155	6.07	0.39	2.5	97.5	0.1	-0.60	1.03	0.84	0.90	5.65	10050	1263	3	0	0	0	0	logfile
✔	7LWQ	23554	2023-08-15	2021-03-01	3.44	3.73	—	3.6	0.013	1.77	3.0	0.10	13.84	0.01	2.519	0.05	1.18	6.6	93.1	0.4	-1.34	0.77	0.79	2.74	3.6	0.002	0.60	0.0	0.04	15.04	0.00	2.183	6.77	0.24	3.8	96.2	0.0	0.36	1.27	0.77	0.80	2.05	19273	2425	7	0	29	0	0	logfile
✔	7LWK	23548	2023-08-17	2021-03-01	2.92	3.11	—	3.1	0.013	1.77	3.0	0.10	13.02	0.01	2.508	0.06	0.65	4.3	95.6	0.1	-0.78	0.71	0.82	3.51	3.1	0.005	0.66	0.0	0.05	15.45	0.00	2.057	5.79	2.14	3.2	96.8	0.0	0.47	1.24	0.73	0.85	2.86	23847	3003	6	0	30	0	0	logfile
✔	7LWV	23558	2023-08-17	2021-03-01	3.12	3.33	—	3.3	0.013	1.78	4.0	0.10	12.57	0.01	2.510	0.06	0.63	4.8	94.9	0.3	-0.77	0.76	0.84	3.95	3.3	0.003	0.60	0.0	0.04	14.53	0.00	2.123	4.48	0.39	3.0	97.0	0.0	0.60	1.23	0.77	0.84	3.22	23561	2980	6	0	34	0	0	logfile
✔	7LWP	23553	2023-08-17	2021-03-01	3.01	3.22	—	3.2	0.013	1.80	8.0	0.10	13.67	0.01	2.498	0.06	1.14	5.6	93.9	0.5	-1.08	0.74	0.81	3.01	3.2	0.005	0.66	0.0	0.05	14.76	0.00	2.162	5.29	0.28	4.5	95.5	0.0	0.25	1.23	0.73	0.84	2.73	23499	2982	6	0	31	0	0	logfile
✔	7ZJL	14750	2023-08-16	2022-04-11	2.6	2.76	2.80	2.7	0.012	1.76	11.0	0.09	12.92	0.01	2.495	0.07	0.48	4.0	95.9	0.0	-0.24	0.68	0.69	3.58	2.7	0.004	0.64	0.0	0.04	15.11	0.00	1.899	4.87	1.32	3.2	96.8	0.0	-0.01	0.89	0.76	0.80	3.21	69412	4551	9	0	0	0	34272	logfile
✔	5U1D	8482	2023-08-10	2016-11-28	3.97	4.06	—	4.3	0.007	1.17	0.0	0.05	12.05	0.00	2.452	0.07	0.84	5.7	94.1	0.2	-2.16	0.36	0.48	1.30	4.1	0.004	0.78	0.0	0.04	15.89	0.00	2.058	14.10	0.51	4.7	95.2	0.1	0.93	1.07	0.52	0.75	1.63	7815	1168	3	0	0	0	0	logfile
✔	7TP8	26048	2023-08-17	2022-01-25	3.4	3.77	—	3.4	0.013	1.76	6.0	0.10	13.10	0.01	2.519	0.07	0.98	6.3	92.8	0.9	-0.98	0.84	0.85	4.23	3.4	0.003	0.59	0.0	0.04	13.65	0.00	2.237	3.83	0.04	4.5	95.4	0.1	0.36	1.61	0.85	0.86	2.93	23199	2983	18	0	58	0	0	logfile
✔	7TLD	25988	2023-08-17	2022-01-18	2.89	3.35	—	3.3	0.013	1.80	0.0	0.09	13.31	0.01	2.524	0.07	0.94	5.2	94.6	0.2	-1.25	0.33	0.48	3.75	3.3	0.003	0.59	0.0	0.04	15.32	0.00	2.161	5.99	1.33	3.4	96.6	0.0	0.25	0.62	0.59	0.77	3.01	22812	2916	3	0	0	0	0	logfile
✔	7TK0	25948	2023-08-16	2022-01-17	4.4	6.63	4.39	4.1	0.019	2.21	0.0	0.00	6.55	0.01	2.394	0.08	0.00	3.9	94.5	1.5	-0.40	0.58	0.62	—	4.1	0.003	0.80	0.0	0.00	5.24	0.00	2.105	7.94	0.00	8.9	90.9	0.3	-0.45	0.81	0.83	0.81	—	20220	5054	27	0	0	0	0	logfile
✔	7TK8	25960	2023-08-16	2022-01-17	4.7	7.79	12.86	4.4	0.019	2.21	0.0	0.00	6.68	0.01	2.390	0.08	0.00	4.1	94.4	1.5	-0.46	0.60	0.61	—	4.4	0.007	1.06	0.0	0.00	6.46	0.01	1.965	24.73	0.00	11.5	88.2	0.3	-0.96	1.58	0.81	0.81	—	20227	5056	27	0	0	0	0	logfile
✔	7M71	23707	2023-08-10	2021-03-26	2.66	3.67	2.73	3.0	0.013	1.86	5.0	0.11	13.09	0.02	2.531	0.08	0.41	5.0	95.0	0.0	-0.93	0.52	0.79	3.87	3.0	0.002	0.62	0.0	0.04	13.69	0.00	2.167	7.04	0.82	3.0	97.0	0.0	-0.16	1.34	0.59	0.90	3.77	6646	852	6	0	4	0	0	logfile
✔	7TKG	25968	2023-08-16	2022-01-17	4.5	7.60	4.79	4.2	0.019	2.20	0.0	0.00	6.95	0.01	2.361	0.08	0.00	4.3	94.2	1.5	-0.60	0.58	0.61	—	4.3	0.007	1.14	0.0	0.00	7.61	0.01	2.015	33.28	0.00	19.7	80.0	0.3	-3.26	2.09	0.77	0.80	—	20228	5056	27	0	0	0	0	logfile
✔	8G3N	29705	2023-08-16	2023-02-08	2.9	3.49	2.87	3.2	0.016	1.76	0.0	0.09	12.89	0.01	2.302	0.08	0.00	4.9	94.9	0.2	-0.63	0.88	0.91	4.67	3.2	0.003	0.72	0.0	0.04	15.16	0.01	2.146	5.01	2.34	3.8	96.1	0.2	-0.40	0.58	0.85	0.88	3.66	20321	2512	39	0	81	0	0	logfile
✔	8CYR	27082	2023-08-09	2022-05-24	4.2	3.54	3.92	4.0	0.003	0.62	0.0	0.05	8.97	0.00	2.654	0.08	2.00	4.4	95.6	0.0	-2.37	0.46	0.55	—	4.0	0.004	0.75	0.0	0.05	11.88	0.00	2.099	11.78	0.00	7.5	92.5	0.0	-3.23	2.73	0.53	0.68	—	5964	864	12	0	0	0	0	logfile
✔	7TKH	25969	2023-08-16	2022-01-17	4.4	7.29	4.45	4.2	0.019	2.19	0.0	0.00	6.81	0.01	2.385	0.08	0.00	3.9	94.7	1.4	-0.35	0.59	0.62	—	4.2	0.018	1.32	0.0	0.00	7.42	0.01	1.974	32.32	0.00	15.1	84.5	0.3	-2.28	1.70	0.83	0.84	—	20228	5056	27	0	0	0	0	logfile
✔	8DP1	27628	2023-08-18	2022-07-14	3.46	4.08	3.46	3.5	0.014	1.85	9.0	0.12	14.13	0.02	2.519	0.08	1.61	4.4	95.0	0.6	-0.92	0.84	0.83	3.01	3.5	0.003	0.64	0.0	0.04	14.71	0.00	2.155	7.03	0.04	2.8	97.1	0.0	-0.06	1.26	0.85	0.86	2.32	25000	3045	33	0	95	0	0	logfile
✔	7TKQ	25978	2023-08-16	2022-01-17	4.5	7.57	4.53	4.3	0.019	2.21	0.0	0.00	6.72	0.01	2.371	0.08	0.00	4.0	94.5	1.5	-0.48	0.59	0.61	—	4.3	0.009	1.21	0.0	0.00	7.52	0.01	1.933	34.86	0.00	13.6	85.9	0.5	-2.21	0.83	0.82	0.83	—	20228	5056	27	0	0	0	0	logfile
✔	7LWi	23546	2023-08-17	2021-03-01	3.07	3.28	—	3.2	0.013	1.78	1.0	0.10	13.36	0.01	2.478	0.08	1.07	5.3	94.4	0.2	-1.20	0.73	0.79	3.51	3.2	0.004	0.65	0.0	0.05	15.04	0.00	2.144	7.34	0.27	4.1	95.9	0.0	-0.02	0.68	0.73	0.80	2.62	23847	3003	6	0	30	0	0	logfile

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