Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ToX	26040	2022-04-07	2022-01-24	3.62	4.01	—	3.6	0.013	1.75	1.0	0.10	13.49	0.01	2.515	0.14	1.35	6.7	92.8	0.5	-1.12	0.85	0.84	2.42	3.6	0.005	0.64	0.0	0.04	14.17	0.00	2.141	7.45	0.08	5.3	94.6	0.1	-0.05	0.49	0.85	0.85	2.00	24618	3041	20	0	61	0	0	logfile
✔	7TPH	26055	2022-04-06	2022-01-25	3.58	4.03	—	3.6	0.013	1.75	5.0	0.09	12.22	0.01	2.501	0.14	1.01	7.2	92.3	0.6	-1.01	0.84	0.85	3.36	3.6	0.004	0.58	0.0	0.04	12.78	0.00	2.203	4.83	0.00	5.1	94.8	0.1	0.30	1.93	0.84	0.86	2.46	22180	2912	14	0	52	0	0	logfile
✔	7QWM	14189	2022-04-04	2022-01-25	2.76	2.21	2.43	2.2	0.012	1.93	3.0	0.11	13.26	0.01	2.502	0.15	0.00	8.0	92.0	0.0	-2.89	0.34	0.80	6.86	2.2	0.004	0.70	0.0	0.05	18.21	0.00	2.103	9.69	0.53	6.8	93.2	0.0	-2.77	0.60	0.38	0.82	6.27	3255	405	3	0	0	0	0	logfile
✔	7LD1	23279	2022-04-07	2021-01-12	3.4	4.18	—	3.7	0.012	1.92	8.0	0.10	12.73	0.01	2.514	0.15	2.35	9.2	89.2	1.6	-2.21	0.84	0.79	2.71	3.7	0.006	0.75	0.0	0.05	13.20	0.00	2.103	8.20	0.25	8.5	91.4	0.0	-1.07	0.55	0.85	0.83	2.27	29456	4251	27	0	67	0	0	logfile
✔	7THE	25893	2022-04-04	2022-01-10	3.79	4.06	3.94	4.0	0.013	1.88	0.0	0.11	13.70	0.02	2.548	0.15	0.00	8.2	91.8	0.0	-2.01	0.67	0.75	3.24	4.0	0.004	0.79	0.0	0.05	16.02	0.00	2.183	17.13	0.83	7.0	93.0	0.0	-1.23	0.72	0.68	0.75	2.31	3305	423	4	0	1	0	0	logfile
✔	7KDi	22823	2022-04-06	2020-10-08	3.26	3.83	—	3.7	0.013	1.69	2.0	0.09	12.53	0.01	2.522	0.15	0.27	6.1	93.8	0.1	-0.76	0.79	0.78	3.13	3.7	0.005	0.65	0.0	0.04	14.07	0.00	2.173	6.42	0.24	4.6	95.3	0.0	0.10	0.66	0.80	0.80	2.60	23688	2916	21	0	63	0	0	logfile
✔	7QK2	14029	2022-04-04	2021-12-17	2.61	2.61	2.37	2.7	0.011	1.86	10.0	0.11	10.81	0.01	2.499	0.15	0.00	4.1	95.9	0.0	-1.51	0.37	0.86	6.04	2.7	0.003	0.65	0.0	0.05	17.08	0.00	2.113	4.53	2.96	2.7	97.3	0.0	-1.83	1.72	0.37	0.87	5.30	3246	426	6	0	0	0	0	logfile
✔	7M0J	23612	2022-04-06	2021-03-11	3.52	3.78	—	3.7	0.013	1.87	1.0	0.10	13.97	0.01	2.528	0.15	1.68	7.4	92.2	0.5	-2.03	0.77	0.78	2.38	3.7	0.004	0.65	0.0	0.04	15.19	0.00	2.110	9.57	0.20	4.3	95.7	0.0	-0.19	1.31	0.78	0.80	2.25	22827	2916	3	0	0	0	0	logfile
✔	7LWi	23546	2022-04-07	2021-03-01	3.07	3.28	—	3.2	0.013	1.78	4.0	0.09	12.99	0.01	2.482	0.15	0.31	5.6	94.2	0.2	-1.24	0.72	0.74	3.32	3.2	0.003	0.64	0.0	0.04	14.88	0.01	2.107	5.66	0.00	3.3	96.6	0.1	0.35	1.66	0.72	0.79	2.22	23847	3003	6	0	30	0	0	logfile
✔	7ToU	26038	2022-04-07	2022-01-24	3.24	3.49	—	3.3	0.013	1.81	8.0	0.11	13.36	0.01	2.517	0.16	1.20	6.2	93.2	0.7	-1.00	0.84	0.85	3.52	3.3	0.003	0.60	0.0	0.04	13.84	0.00	2.148	5.27	0.11	4.3	95.7	0.0	0.42	0.58	0.85	0.87	2.72	24687	3050	20	0	61	0	0	logfile
✔	7N5F	24188	2022-04-04	2021-06-05	2.7	2.27	2.74	2.0	0.023	1.50	0.0	0.10	9.99	0.01	2.468	0.16	0.00	1.3	98.7	0.0	1.68	0.36	0.75	3.32	1.7	0.003	0.56	0.0	0.04	17.43	0.00	2.324	7.74	0.95	1.3	98.7	0.0	2.60	0.79	0.35	0.77	3.26	3037	386	1	0	1	0	0	logfile
✔	7KE6	22832	2022-04-06	2020-10-10	3.1	3.68	—	3.6	0.013	1.75	4.0	0.10	13.65	0.01	2.558	0.17	1.02	6.5	93.2	0.3	-1.42	0.78	0.77	3.34	3.5	0.003	0.63	0.0	0.04	14.65	0.00	2.154	6.18	0.27	3.7	96.3	0.0	0.25	1.26	0.75	0.78	2.56	23688	2916	21	0	63	0	0	logfile
✔	7N5G	24189	2022-04-04	2021-06-05	2.4	2.16	2.42	1.5	0.022	1.51	0.0	0.09	10.57	0.01	2.386	0.17	0.00	0.8	99.2	0.0	1.84	0.40	0.79	3.64	1.5	0.003	0.56	0.0	0.04	16.74	0.00	2.228	4.78	2.28	1.4	98.6	0.0	2.95	1.21	0.39	0.80	2.58	2926	371	1	0	1	0	0	logfile
✔	7LWL	23549	2022-04-07	2021-03-01	2.84	3.04	—	3.0	0.013	1.79	4.0	0.09	12.83	0.01	2.499	0.17	0.19	4.3	95.4	0.3	-0.71	0.72	0.79	3.92	3.0	0.005	0.74	0.0	0.05	15.06	0.00	2.131	5.70	0.99	3.0	97.0	0.0	0.43	0.61	0.72	0.84	3.36	23847	3003	6	0	30	0	0	logfile
✔	7LWV	23558	2022-04-06	2021-03-01	3.12	3.34	—	3.3	0.013	1.76	6.0	0.09	12.69	0.02	1.569	0.17	0.47	5.4	94.3	0.3	-0.82	0.71	0.78	3.99	3.3	0.003	0.59	0.0	0.04	14.45	0.00	2.219	4.45	0.16	3.1	96.9	0.0	0.60	0.62	0.76	0.84	3.18	23564	2980	6	0	34	0	0	logfile
✔	7K45	22660	2022-04-04	2020-09-14	3.7	3.90	3.76	3.9	0.014	1.41	0.0	0.08	9.47	0.01	2.568	0.18	0.00	2.2	97.8	0.0	0.92	0.79	0.78	4.02	3.9	0.020	1.45	1.0	0.06	14.84	0.01	2.277	8.49	0.00	3.2	96.8	0.0	0.06	1.30	0.80	0.80	2.81	3038	419	4	0	2	0	0	logfile
✘	6P6F	20261	2022-04-10	2019-06-03	4.5	4.71	4.50	4.6	0.017	1.59	0.0	0.09	9.24	0.01	2.442	0.18	0.00	0.3	99.7	0.0	0.73	0.71	0.82	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	159840	21060	120	0	0	0	0	logfile
✔	6X79	22083	2022-04-06	2020-05-29	2.9	3.14	3.00	3.1	0.013	1.33	0.0	0.09	10.39	0.01	2.382	0.18	0.26	2.5	97.5	0.0	0.59	0.71	0.74	3.18	3.1	0.004	0.60	0.0	0.04	14.67	0.00	2.196	5.63	2.70	2.5	97.5	0.0	0.38	1.35	0.72	0.80	2.62	22251	2850	15	0	51	0	0	logfile
✔	7NCJ	12268	2022-04-05	2021-01-28	4.23	3.11	3.97	4.5	0.011	1.60	2.0	0.10	13.68	0.01	2.444	0.18	0.76	7.7	92.0	0.3	-2.36	0.65	0.46	—	4.5	0.003	0.61	1.0	0.05	14.19	0.00	1.945	15.31	0.00	10.3	89.7	0.0	-2.78	1.36	0.70	0.58	—	10860	774	12	0	0	0	5586	logfile
✔	7TP2	26046	2022-04-07	2022-01-24	3.72	4.22	—	3.7	0.013	1.75	6.0	0.10	13.56	0.01	2.529	0.18	1.32	7.2	92.4	0.4	-1.34	0.85	0.84	2.45	3.7	0.003	0.60	0.0	0.04	13.99	0.00	2.148	6.99	0.11	4.4	95.5	0.1	0.06	0.47	0.85	0.85	1.67	24663	3047	20	0	61	0	0	logfile

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