Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7M0J	23612	2023-04-26	2021-03-11	3.52	3.78	—	3.7	0.013	1.87	1.0	0.10	13.97	0.01	2.528	0.15	1.68	7.4	92.2	0.5	-2.03	0.77	0.78	2.38	3.7	0.004	0.65	0.0	0.04	15.10	0.00	2.116	9.45	0.23	4.3	95.7	0.0	-0.15	1.32	0.78	0.80	2.25	22827	2916	3	0	0	0	0	logfile
✔	7LD1	23279	2023-04-29	2021-01-12	3.4	4.18	—	3.7	0.013	1.93	8.0	0.10	12.95	0.01	2.514	0.15	2.35	9.2	89.2	1.6	-2.22	0.84	0.79	2.71	3.7	0.004	0.70	0.0	0.04	13.50	0.00	2.164	7.49	0.29	7.6	92.3	0.0	-0.97	0.56	0.85	0.83	2.24	29444	4249	27	0	67	0	0	logfile
✔	7KDi	22823	2023-04-26	2020-10-08	3.26	3.83	—	3.7	0.014	1.70	2.0	0.10	12.73	0.01	2.522	0.15	0.27	6.1	93.8	0.1	-0.76	0.79	0.78	3.13	3.7	0.005	0.66	0.0	0.04	14.30	0.00	2.147	6.37	0.12	4.5	95.4	0.0	0.16	0.65	0.79	0.80	2.64	23688	2916	21	0	63	0	0	logfile
✔	7N5F	24188	2023-04-19	2021-06-05	2.7	2.27	2.74	2.0	0.023	1.50	0.0	0.10	9.99	0.01	2.468	0.16	0.00	1.3	98.7	0.0	1.68	0.36	0.75	3.32	1.7	0.003	0.57	0.0	0.04	17.55	0.00	2.307	7.74	1.59	1.6	98.4	0.0	2.51	0.79	0.36	0.78	3.13	3037	386	1	0	1	0	0	logfile
✔	8FD5	29002	2023-04-19	2022-12-02	4.57	4.19	—	10.0	0.016	2.15	4.0	0.13	13.14	0.02	2.541	0.16	0.29	3.8	96.2	0.0	-1.38	0.28	0.02	—	3.5	0.004	0.81	0.0	0.04	13.27	0.01	2.112	15.37	0.00	6.2	93.8	0.0	-1.75	1.59	0.40	0.17	—	3214	419	1	0	0	0	0	logfile
✔	7TPH	26055	2023-04-26	2022-01-25	3.58	4.03	—	3.6	0.013	1.76	5.0	0.10	12.39	0.01	2.501	0.16	1.01	7.2	92.3	0.6	-1.01	0.84	0.85	3.36	3.6	0.003	0.58	0.0	0.04	12.96	0.00	2.211	4.62	0.14	4.7	95.2	0.1	0.29	1.93	0.84	0.86	2.45	22180	2912	14	0	52	0	0	logfile
✔	7N5G	24189	2023-04-19	2021-06-05	2.4	2.16	2.42	1.5	0.022	1.51	0.0	0.09	10.57	0.01	2.386	0.17	0.00	0.8	99.2	0.0	1.84	0.40	0.79	3.64	1.5	0.003	0.57	0.0	0.04	16.52	0.00	2.220	4.78	2.61	1.4	98.6	0.0	2.92	1.20	0.39	0.80	2.57	2926	371	1	0	1	0	0	logfile
✔	7LYL	23594	2023-04-26	2021-03-07	3.72	4.02	—	3.8	0.013	1.70	2.0	0.09	13.11	0.01	2.538	0.17	0.69	5.7	94.2	0.1	-1.00	0.81	0.83	2.52	3.8	0.003	0.62	0.0	0.04	14.22	0.00	2.100	6.45	0.19	3.7	96.3	0.0	0.52	0.62	0.82	0.84	1.98	23826	3003	6	0	28	0	0	logfile
✔	7ToU	26038	2023-04-27	2022-01-24	3.24	3.49	—	3.3	0.014	1.82	8.0	0.11	13.56	0.01	2.517	0.18	1.20	6.2	93.2	0.7	-1.00	0.84	0.85	3.52	3.3	0.003	0.60	0.0	0.04	14.04	0.00	2.134	5.38	0.04	4.2	95.7	0.0	0.51	0.57	0.85	0.87	2.72	24687	3050	20	0	61	0	0	logfile
✔	6UJA	20794	2023-04-20	2019-10-02	3.3	3.49	—	3.4	0.014	1.49	0.0	0.09	10.46	0.01	1.802	0.19	0.14	2.7	97.1	0.2	0.28	0.82	0.82	3.35	3.4	0.004	0.65	0.0	0.05	13.99	0.00	2.008	6.45	0.55	3.4	96.6	0.0	0.13	1.49	0.83	0.85	3.06	8224	1128	10	0	23	0	0	logfile
✔	7TJZ	25947	2023-04-25	2022-01-17	4.4	7.00	4.54	4.2	0.019	2.21	0.0	0.00	6.67	0.01	2.384	0.19	0.00	4.2	94.2	1.6	-0.41	0.58	0.63	—	4.2	0.017	1.19	0.0	0.00	6.51	0.01	2.047	16.64	0.00	13.2	86.4	0.3	-1.19	0.80	0.82	0.83	—	20228	5056	27	0	0	0	0	logfile
✔	8CSA	26961	2023-04-26	2022-05-12	3.84	4.24	3.87	3.9	0.012	1.75	3.0	0.09	13.74	0.02	2.527	0.19	1.18	6.0	93.8	0.2	-1.46	0.82	0.78	0.63	3.9	0.004	0.67	0.0	0.04	15.01	0.00	2.101	12.64	0.23	4.2	95.8	0.0	0.02	1.66	0.83	0.79	0.26	23442	3003	3	0	0	0	0	logfile
✔	6X2C	22001	2023-04-26	2020-05-20	3.2	3.70	3.21	3.6	0.013	1.81	6.0	0.09	13.39	0.02	2.550	0.20	3.17	5.3	94.4	0.3	-1.74	0.79	0.81	3.48	3.6	0.003	0.59	0.0	0.04	13.81	0.00	2.226	5.41	0.08	3.7	96.3	0.0	0.19	1.24	0.80	0.85	3.02	22800	2913	3	0	0	0	0	logfile
✔	6oLK	20115	2023-04-25	2019-04-16	4.0	4.14	—	4.1	0.005	1.04	0.0	0.06	5.09	0.01	2.445	0.20	0.00	2.3	97.7	0.0	-0.75	0.56	0.49	—	4.1	0.005	0.93	0.0	0.05	7.00	0.00	2.045	9.16	0.00	14.0	86.0	0.0	-2.47	1.44	0.64	0.61	—	10323	2094	6	0	0	0	0	logfile
✔	7TP2	26046	2023-04-27	2022-01-24	3.72	4.22	—	3.7	0.014	1.76	6.0	0.10	13.76	0.01	2.529	0.21	1.32	7.2	92.4	0.4	-1.34	0.85	0.84	2.45	3.7	0.006	0.69	0.0	0.04	14.15	0.00	2.107	8.05	0.15	5.6	94.3	0.1	-0.27	0.47	0.85	0.85	1.77	24663	3047	20	0	61	0	0	logfile
✔	7TP1	26045	2023-04-27	2022-01-24	3.81	4.30	—	3.8	0.014	1.75	5.0	0.10	13.73	0.01	2.523	0.21	1.39	6.7	92.4	0.9	-1.32	0.85	0.84	1.81	3.8	0.005	0.72	0.0	0.04	14.38	0.00	2.062	9.68	0.15	6.3	93.7	0.0	-0.23	1.20	0.86	0.85	1.65	24646	3046	20	0	61	0	0	logfile
✔	6G8Z	4362	2023-04-23	2018-04-10	3.66	3.88	3.72	3.8	0.005	0.77	0.0	0.04	8.70	0.00	2.362	0.22	0.00	3.8	96.2	0.0	-0.63	0.66	0.79	4.14	3.8	0.004	0.60	0.0	0.04	13.40	0.00	2.213	5.17	0.06	3.9	96.1	0.0	2.38	1.65	0.70	0.85	2.82	15966	1908	6	0	0	0	0	logfile
✔	7SG4	25105	2023-04-28	2021-10-04	3.43	4.18	—	3.5	0.014	1.91	30.0	0.12	13.29	0.02	2.531	0.22	2.01	9.5	88.9	1.6	-2.14	0.84	0.82	2.83	3.5	0.003	0.71	0.0	0.05	13.79	0.00	2.025	9.90	0.10	8.3	91.5	0.2	-0.77	1.24	0.85	0.82	1.84	28709	3737	8	0	47	0	0	logfile
✔	7L6o	23124	2023-04-29	2020-12-23	3.9	4.18	3.92	3.9	0.016	2.00	2.0	0.12	14.17	0.02	2.534	0.23	0.70	8.2	91.1	0.7	-1.91	0.83	0.80	3.20	3.9	0.003	0.62	0.0	0.04	14.43	0.00	1.939	5.88	0.19	5.1	94.9	0.0	-0.75	1.22	0.83	0.80	2.18	29270	1776	51	0	132	0	13598	logfile
✔	6U7H	20668	2023-04-26	2019-09-02	3.1	3.91	3.18	3.6	0.013	1.78	33.0	0.11	13.27	0.01	2.282	0.24	0.24	4.3	95.7	0.0	-0.94	0.86	0.85	3.84	3.6	0.003	0.59	0.0	0.04	13.74	0.00	2.291	6.30	0.16	3.2	96.8	0.0	0.49	1.23	0.85	0.84	3.09	23394	2895	21	0	81	0	0	logfile

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