Table showing results for November 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KDK	22825	2021-11-03	2020-10-08	2.8	3.18	—	3.1	0.013	1.77	8.0	0.10	12.82	0.01	2.490	0.30	0.12	5.2	94.7	0.1	-0.98	0.75	0.77	3.89	3.1	0.004	0.62	0.0	0.04	15.19	0.00	2.145	6.65	1.57	3.2	96.8	0.0	0.35	1.25	0.74	0.81	3.16	23688	2916	21	0	63	0	0	logfile
✔	5YU8	6844	2021-11-03	2017-11-21	3.8	3.92	—	3.9	0.014	1.86	0.0	0.09	12.63	0.02	1.834	0.30	0.25	2.5	97.3	0.2	-3.36	0.62	0.83	3.41	3.9	0.003	0.66	0.0	0.04	15.62	0.00	2.038	6.13	0.25	1.5	98.5	0.0	-0.42	2.30	0.61	0.85	2.06	18147	2292	13	0	10	0	0	logfile
✔	6VGK	21197	2021-11-03	2020-01-08	3.1	3.32	—	3.4	0.020	1.84	0.0	0.09	9.91	0.01	2.394	0.31	0.00	3.4	95.8	0.8	-0.29	0.54	0.69	4.26	3.4	0.004	0.64	0.0	0.04	13.95	0.00	2.129	8.78	0.15	3.7	96.0	0.3	1.78	1.25	0.69	0.82	3.30	19222	2513	14	0	0	0	0	logfile
✔	6X2B	22000	2021-11-03	2020-05-20	3.6	4.27	3.73	3.9	0.012	1.74	2.0	0.09	13.17	0.01	2.530	0.32	2.08	6.7	92.9	0.4	-1.72	0.77	0.76	2.50	3.9	0.005	0.64	0.0	0.04	13.37	0.00	2.160	7.63	0.14	4.7	95.3	0.0	0.26	0.54	0.83	0.83	2.04	21120	2861	3	0	0	0	0	logfile
✔	6ZMS	11300	2021-11-02	2020-07-03	3.4	3.78	—	3.8	0.019	1.98	3.0	0.10	14.13	0.01	2.427	0.32	2.12	5.6	91.4	3.0	-2.88	0.40	0.72	1.84	3.7	0.021	1.12	0.0	0.04	15.75	0.01	1.995	5.49	0.14	6.8	92.8	0.4	-1.95	1.78	0.36	0.84	3.82	12570	818	4	0	0	0	6173	logfile
✔	6C0V	7325	2021-11-01	2018-01-02	3.4	3.67	—	3.9	0.008	1.14	0.0	0.06	12.84	0.00	1.961	0.33	0.00	4.3	95.7	0.0	-2.20	0.42	0.67	2.82	3.8	0.003	0.62	0.0	0.04	16.42	0.00	2.032	7.91	0.43	2.7	97.3	0.0	1.18	1.22	0.58	0.86	2.17	8976	1154	1	0	4	0	0	logfile
✔	6UJB	20795	2021-11-01	2019-10-02	3.51	3.73	—	3.6	0.014	1.44	0.0	0.08	10.89	0.01	1.782	0.33	0.00	2.7	97.3	0.0	0.55	0.77	0.83	3.18	3.6	0.004	0.61	0.0	0.04	14.30	0.00	2.158	7.30	0.00	3.8	96.2	0.0	0.11	1.54	0.78	0.85	3.27	9193	1180	6	0	23	0	0	logfile
✔	7KQB	22993	2021-11-02	2020-11-14	2.42	3.64	2.56	2.6	0.012	1.79	14.0	0.10	13.73	0.01	2.506	0.35	1.23	5.3	94.4	0.2	-1.06	0.79	0.63	3.08	2.6	0.004	0.58	0.0	0.04	14.01	0.00	2.042	5.91	0.59	4.8	95.2	0.0	-0.28	0.60	0.89	0.84	2.58	63309	4105	10	0	23	0	31094	logfile
✔	7NCi	12267	2021-11-02	2021-01-28	3.55	3.67	3.44	4.0	0.012	1.57	2.0	0.10	15.57	0.01	2.481	0.35	0.00	8.9	91.1	0.0	-3.74	0.68	0.59	1.81	3.8	0.004	0.66	2.0	0.05	14.87	0.00	1.869	24.05	1.67	16.4	83.6	0.0	-4.19	1.61	0.66	0.61	0.52	11292	816	12	0	0	0	5796	logfile
✔	6HXZ	0298	2021-11-04	2018-10-18	4.1	4.12	3.30	4.1	0.008	1.04	0.0	0.06	11.58	0.01	2.476	0.35	1.95	13.3	86.7	0.0	-5.83	0.63	0.83	—	4.1	0.004	0.78	0.0	0.04	13.10	0.01	2.139	10.27	0.00	9.4	90.6	0.0	-2.11	1.42	0.63	0.82	—	34008	4224	24	0	0	0	0	logfile
✔	7LAA	23246	2021-11-06	2021-01-06	3.42	3.63	3.49	3.6	0.013	1.92	9.0	0.10	13.69	0.01	2.524	0.36	1.87	7.0	92.5	0.5	-2.08	0.66	0.70	2.85	3.6	0.007	0.75	1.0	0.05	14.95	0.00	1.763	10.54	0.64	8.3	91.7	0.0	-1.32	0.85	0.68	0.76	2.22	45934	3002	25	0	57	0	22222	logfile
✔	7KE7	22833	2021-11-03	2020-10-10	3.32	3.94	—	3.7	0.013	1.73	5.0	0.10	12.95	0.02	2.502	0.36	0.08	7.5	92.2	0.3	-1.34	0.75	0.69	2.06	3.7	0.004	0.66	0.0	0.04	14.33	0.00	2.179	9.41	0.12	4.5	95.5	0.0	-0.23	1.27	0.81	0.76	1.75	23688	2916	21	0	63	0	0	logfile
✔	7K4N	22668	2021-11-03	2020-09-15	3.3	3.50	3.37	3.4	0.013	1.39	0.0	0.09	9.52	0.01	2.431	0.37	0.00	2.7	97.3	0.0	0.95	0.80	0.80	4.31	3.4	0.009	0.86	1.0	0.05	12.64	0.00	2.050	6.52	0.00	1.6	98.4	0.0	1.17	0.52	0.81	0.80	3.92	25353	3654	27	0	63	0	0	logfile
✔	7KEA	22836	2021-11-03	2020-10-10	3.33	3.98	—	3.8	0.013	1.82	6.0	0.09	13.63	0.01	1.103	0.37	1.24	7.2	92.4	0.4	-1.82	0.81	0.76	2.96	3.7	0.004	0.63	0.0	0.04	14.23	0.00	2.002	8.87	0.04	3.5	96.5	0.0	0.06	1.26	0.82	0.80	2.21	22351	2875	18	0	58	0	0	logfile
✔	7NCK	12269	2021-11-01	2021-01-28	3.18	3.22	2.86	3.4	0.011	2.19	6.0	0.10	11.66	0.01	2.583	0.37	3.33	4.0	96.0	0.0	-2.54	0.39	0.71	4.89	3.4	0.003	0.59	0.0	0.05	16.28	0.00	2.102	7.37	0.00	5.1	94.9	0.0	-2.21	0.94	0.35	0.72	2.94	5430	384	6	0	0	0	2778	logfile
✔	5UAK	8516	2021-11-01	2016-12-19	3.87	4.12	—	4.2	0.008	1.08	0.0	0.06	13.28	0.00	2.474	0.37	0.00	4.3	95.7	0.0	-3.02	0.42	0.62	1.39	4.1	0.003	0.75	0.0	0.04	16.73	0.00	2.207	11.61	0.50	2.8	97.2	0.0	0.76	1.62	0.53	0.76	0.98	9232	1139	2	0	19	0	0	logfile
✔	7MN6	23917	2021-11-02	2021-04-30	3.09	3.68	3.18	3.5	0.012	1.50	0.0	0.08	11.06	0.01	2.392	0.37	0.00	3.5	96.4	0.2	-0.15	0.85	0.85	3.26	3.5	0.003	0.62	0.0	0.05	13.55	0.00	2.276	4.57	0.09	3.6	96.4	0.1	-0.06	1.12	0.85	0.87	3.16	9649	1227	8	0	13	0	0	logfile
✔	7JW0	22512	2021-11-04	2020-08-24	4.3	4.63	4.41	4.4	0.010	1.51	6.0	0.09	8.08	0.01	2.527	0.37	0.00	2.3	97.5	0.1	1.05	0.81	0.71	—	4.4	0.003	0.63	0.0	0.05	9.45	0.00	2.170	4.89	0.00	2.6	97.4	0.0	0.46	0.79	0.85	0.79	—	26251	4314	27	0	69	0	0	logfile
✔	7LYQ	23599	2021-11-03	2021-03-07	3.34	3.59	—	3.6	0.013	1.74	3.0	0.09	12.49	0.02	2.256	0.39	0.55	5.8	93.7	0.4	-0.90	0.75	0.78	3.40	3.6	0.004	0.62	0.0	0.04	14.10	0.00	2.188	5.55	0.12	3.5	96.5	0.0	0.53	0.69	0.79	0.84	2.55	23642	2985	6	0	38	0	0	logfile
✔	7KNA	22937	2021-11-02	2020-11-04	3.3	3.42	2.98	3.3	0.016	1.46	0.0	0.09	10.11	0.01	2.426	0.40	0.50	1.9	97.9	0.2	0.26	0.83	0.81	4.04	3.3	0.003	0.54	0.0	0.04	13.35	0.00	2.246	5.30	0.00	2.4	97.6	0.0	0.65	0.59	0.85	0.85	3.47	11593	1449	12	0	24	0	0	logfile

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