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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7QJW | 14024 | 2024-03-11 | 2021-12-17 | 2.81 | 2.81 | 1.88 | 2.9 | 0.012 | 2.09 | 0.0 | 0.10 | 11.96 | 0.01 | 2.556 | 0.00 | 0.00 | 2.3 | 96.3 | 1.4 | -1.19 | 0.34 | 0.72 | 5.41 | 2.8 | 0.002 | 0.58 | 0.0 | 0.05 | 15.06 | 0.00 | 2.295 | 3.99 | 1.52 | 3.4 | 96.6 | 0.0 | -1.63 | 1.46 | 0.38 | 0.78 | 5.04 | 7032 | 450 | 6 | 0 | 0 | 0 | 3588 | logfile |
✔ | 7QK6 | 14039 | 2024-03-10 | 2021-12-17 | 2.27 | 2.34 | 2.17 | 2.3 | 0.011 | 1.84 | 0.0 | 0.09 | 9.70 | 0.01 | 2.520 | 0.00 | 0.00 | 6.4 | 93.6 | 0.0 | -1.99 | 0.37 | 0.79 | 7.78 | 2.3 | 0.003 | 0.60 | 0.0 | 0.05 | 16.13 | 0.00 | 2.371 | 4.46 | 0.69 | 5.8 | 94.2 | 0.0 | -2.05 | 1.45 | 0.38 | 0.85 | 7.07 | 2469 | 162 | 3 | 0 | 0 | 0 | 1278 | logfile |
✔ | 7QKi | 14043 | 2024-03-11 | 2021-12-17 | 3.13 | 3.29 | 3.04 | 3.2 | 0.011 | 1.99 | 3.0 | 0.10 | 9.18 | 0.01 | 2.508 | 0.00 | 0.00 | 10.1 | 89.9 | 0.0 | -1.50 | 0.41 | 0.79 | 6.28 | 3.3 | 0.003 | 0.57 | 0.0 | 0.05 | 11.60 | 0.00 | 2.124 | 3.82 | 0.00 | 4.7 | 95.3 | 0.0 | -1.67 | 0.71 | 0.38 | 0.80 | 5.38 | 7074 | 456 | 6 | 0 | 0 | 0 | 3606 | logfile |
✔ | 7QL3 | 14062 | 2024-03-10 | 2021-12-19 | 3.32 | 3.47 | 3.01 | 3.5 | 0.011 | 2.01 | 8.0 | 0.11 | 12.27 | 0.01 | 2.489 | 0.00 | 0.00 | 7.7 | 92.3 | 0.0 | -3.47 | 0.46 | 0.82 | 4.29 | 3.5 | 0.003 | 0.81 | 0.0 | 0.05 | 13.77 | 0.01 | 2.131 | 4.53 | 2.15 | 4.1 | 95.9 | 0.0 | -2.57 | 1.14 | 0.43 | 0.83 | 4.68 | 3246 | 426 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 8Q9G | 18280 | 2024-03-11 | 2023-08-20 | 2.65 | 1.99 | 2.52 | 2.2 | 0.011 | 1.95 | 0.0 | 0.09 | 10.25 | 0.01 | 2.554 | 0.00 | 0.00 | 1.6 | 98.4 | 0.0 | -1.98 | 0.25 | 0.66 | 6.26 | 2.2 | 0.003 | 0.57 | 0.0 | 0.05 | 16.34 | 0.00 | 2.084 | 3.08 | 1.82 | 1.4 | 98.6 | 0.0 | -2.01 | 1.21 | 0.34 | 0.84 | 6.52 | 6822 | 438 | 6 | 0 | 0 | 0 | 3480 | logfile |
✔ | 3JBS | 6478 | 2024-03-10 | 2015-10-13 | 2.9 | 3.04 | — | 3.2 | 0.010 | 1.32 | 0.0 | 0.06 | 8.67 | 0.01 | 2.510 | 0.00 | 0.00 | 2.9 | 97.1 | 0.0 | 0.51 | 0.21 | 0.76 | 4.15 | 3.0 | 0.003 | 0.64 | 0.0 | 0.04 | 17.82 | 0.00 | 2.204 | 8.27 | 3.29 | 2.9 | 97.1 | 0.0 | 0.53 | 1.83 | 0.21 | 0.82 | 3.71 | 1401 | 175 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8Q9L | 18285 | 2024-03-15 | 2023-08-20 | 2.76 | 2.36 | 2.64 | 2.6 | 0.011 | 1.76 | 0.0 | 0.09 | 11.63 | 0.01 | 2.537 | 0.00 | 0.00 | 1.6 | 98.4 | 0.0 | -1.68 | 0.29 | 0.76 | 6.43 | 2.6 | 0.002 | 0.51 | 0.0 | 0.05 | 17.45 | 0.00 | 2.055 | 2.15 | 0.87 | 1.3 | 98.7 | 0.0 | -2.16 | 1.43 | 0.37 | 0.86 | 6.69 | 10233 | 657 | 9 | 0 | 0 | 0 | 5220 | logfile |
✔ | 7QKW | 14055 | 2024-03-10 | 2021-12-19 | 2.32 | 1.74 | 2.60 | 2.3 | 0.010 | 1.93 | 1.0 | 0.10 | 13.53 | 0.01 | 2.534 | 0.00 | 0.00 | 5.4 | 94.6 | 0.0 | -2.79 | 0.41 | 0.81 | 7.02 | 2.3 | 0.002 | 0.53 | 0.0 | 0.05 | 16.60 | 0.00 | 2.475 | 2.77 | 2.54 | 5.4 | 94.6 | 0.0 | -2.80 | 1.30 | 0.42 | 0.85 | 6.06 | 4707 | 306 | 6 | 0 | 0 | 0 | 2439 | logfile |
✔ | 6WX6 | 21951 | 2024-03-14 | 2020-05-09 | 2.0 | 2.11 | 2.08 | 2.1 | 0.006 | 0.69 | 0.0 | 0.04 | 14.94 | 0.00 | 2.277 | 0.00 | 0.00 | 1.2 | 98.8 | 0.0 | 1.60 | 0.77 | 0.88 | 7.70 | 2.1 | 0.003 | 0.51 | 0.0 | 0.03 | 16.14 | 0.00 | 2.032 | 2.91 | 0.69 | 1.2 | 98.8 | 0.0 | 4.80 | 0.56 | 0.79 | 0.90 | 7.39 | 68332 | 4128 | 56 | 0 | 8 | 2420 | 32664 | logfile |
✔ | 7ZJ2 | 14739 | 2024-03-10 | 2022-04-08 | 3.32 | 3.56 | — | 3.6 | 0.014 | 2.21 | 0.0 | 0.08 | 15.29 | 0.01 | 2.548 | 0.00 | 0.00 | 2.3 | 97.7 | 0.0 | -3.75 | 0.47 | 0.78 | 4.64 | 3.6 | 0.007 | 0.75 | 0.0 | 0.03 | 16.74 | 0.00 | 2.133 | 17.07 | 8.91 | 3.9 | 96.1 | 0.0 | -3.48 | 1.43 | 0.43 | 0.76 | 4.95 | 3792 | 540 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8KB5 | 37070 | 2024-03-15 | 2023-08-03 | 2.26133 | 2.35 | 2.23 | 2.3 | 0.007 | 0.98 | 0.0 | 0.05 | 28.08 | 0.01 | 2.377 | 0.00 | 0.00 | 0.7 | 99.3 | 0.0 | 2.15 | 0.79 | 0.85 | 3.73 | 2.3 | 0.003 | 0.58 | 0.0 | 0.03 | 28.28 | 0.00 | 2.139 | 4.23 | 1.43 | 1.1 | 98.9 | 0.0 | 2.93 | 0.23 | 0.78 | 0.85 | 3.55 | 11953 | 758 | 10 | 290 | 0 | 0 | 0 | logfile |
✔ | 8ED3 | 28027 | 2024-03-19 | 2022-09-02 | 3.5 | 3.26 | 3.44 | 3.5 | 0.013 | 1.18 | 0.0 | 0.08 | 10.35 | 0.01 | 2.429 | 0.01 | 0.00 | 2.5 | 97.5 | 0.0 | -0.72 | 0.79 | 0.77 | 1.60 | 3.5 | 0.003 | 0.57 | 0.0 | 0.05 | 14.91 | 0.00 | 2.091 | 8.02 | 2.64 | 1.8 | 98.2 | 0.0 | 1.02 | 0.87 | 0.80 | 0.81 | 1.35 | 91140 | 12060 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TP9 | 26049 | 2024-03-19 | 2022-01-25 | 3.48 | 3.86 | — | 3.5 | 0.014 | 1.77 | 6.0 | 0.10 | 12.37 | 0.01 | 2.518 | 0.02 | 0.94 | 6.9 | 92.4 | 0.7 | -0.96 | 0.84 | 0.84 | 3.41 | 3.5 | 0.005 | 0.65 | 0.0 | 0.04 | 13.09 | 0.00 | 2.169 | 5.67 | 0.85 | 5.5 | 94.4 | 0.1 | 0.09 | 0.48 | 0.85 | 0.87 | 2.72 | 23199 | 2983 | 18 | 0 | 58 | 0 | 0 | logfile |
✔ | 7WVZ | 32863 | 2024-03-25 | 2022-02-12 | 3.38 | 3.15 | 3.39 | 3.4 | 0.012 | 1.77 | 5.0 | 0.09 | 12.99 | 0.02 | 2.526 | 0.04 | 1.38 | 4.3 | 95.5 | 0.1 | -0.87 | 0.60 | 0.69 | 2.71 | 3.3 | 0.003 | 0.61 | 0.0 | 0.04 | 14.44 | 0.01 | 2.031 | 4.45 | 1.58 | 3.9 | 96.1 | 0.0 | 0.22 | 1.37 | 0.69 | 0.80 | 2.29 | 49889 | 3430 | 2 | 0 | 0 | 0 | 24824 | logfile |
✔ | 7TPF | 26053 | 2024-03-19 | 2022-01-25 | 3.4 | 3.74 | — | 3.4 | 0.013 | 1.76 | 3.0 | 0.09 | 12.31 | 0.01 | 2.518 | 0.04 | 0.72 | 6.1 | 93.5 | 0.3 | -0.86 | 0.84 | 0.86 | 3.82 | 3.4 | 0.002 | 0.59 | 0.0 | 0.04 | 12.78 | 0.00 | 2.152 | 4.23 | 0.72 | 4.0 | 95.9 | 0.1 | 0.41 | 0.45 | 0.85 | 0.87 | 2.97 | 23199 | 2983 | 18 | 0 | 58 | 0 | 0 | logfile |
✔ | 7LYM | 23595 | 2024-03-19 | 2021-03-07 | 3.57 | 3.82 | — | 3.7 | 0.013 | 1.73 | 2.0 | 0.10 | 12.92 | 0.01 | 2.536 | 0.04 | 0.84 | 5.3 | 94.4 | 0.4 | -1.08 | 0.80 | 0.83 | 2.78 | 3.7 | 0.005 | 0.65 | 0.0 | 0.05 | 14.28 | 0.00 | 2.112 | 6.11 | 1.76 | 4.0 | 96.0 | 0.0 | 0.19 | 0.64 | 0.81 | 0.83 | 2.39 | 23916 | 3006 | 6 | 0 | 33 | 0 | 0 | logfile |
✔ | 7UGU | 26406 | 2024-03-26 | 2022-03-25 | 2.6 | 2.77 | 2.61 | 2.8 | 0.014 | 2.09 | 33.0 | 0.10 | 14.05 | 0.02 | 2.521 | 0.04 | 0.73 | 5.0 | 94.9 | 0.1 | -2.11 | 0.64 | 0.75 | 3.42 | 2.8 | 0.004 | 0.69 | 0.0 | 0.04 | 16.85 | 0.01 | 1.823 | 4.25 | 3.85 | 5.8 | 94.2 | 0.0 | -1.07 | 1.40 | 0.61 | 0.74 | 2.45 | 52752 | 3488 | 8 | 0 | 0 | 0 | 26176 | logfile |
✔ | 7SCZ | 25043 | 2024-03-19 | 2021-09-29 | 3.5 | 4.01 | 3.49 | 3.8 | 0.014 | 1.91 | 1.0 | 0.09 | 27.44 | 0.03 | 2.529 | 0.04 | 0.00 | 1.7 | 98.3 | 0.0 | 0.09 | 0.80 | 0.77 | 2.51 | 3.8 | 0.005 | 0.65 | 0.0 | 0.04 | 27.66 | 0.00 | 1.950 | 6.94 | 1.82 | 2.3 | 97.7 | 0.0 | 2.54 | 1.42 | 0.79 | 0.80 | 1.56 | 23205 | 850 | 11 | 294 | 0 | 0 | 10435 | logfile |
✔ | 8UZ1 | 42830 | 2024-03-26 | 2023-11-14 | 3.6 | 3.84 | 3.63 | 3.9 | 0.012 | 1.91 | 30.0 | 0.11 | 15.16 | 0.01 | 1.829 | 0.04 | 1.34 | 4.9 | 94.9 | 0.2 | -1.77 | 0.76 | 0.83 | 3.08 | 3.9 | 0.003 | 0.62 | 0.0 | 0.04 | 15.51 | 0.00 | 0.770 | 6.48 | 1.52 | 3.9 | 96.1 | 0.0 | -0.24 | 1.52 | 0.70 | 0.81 | 2.01 | 52329 | 3348 | 18 | 0 | 27 | 0 | 25860 | logfile |
✔ | 7LWL | 23549 | 2024-03-19 | 2021-03-01 | 2.84 | 3.04 | — | 3.0 | 0.013 | 1.79 | 2.0 | 0.10 | 12.81 | 0.01 | 2.505 | 0.04 | 0.53 | 4.2 | 95.6 | 0.2 | -0.78 | 0.72 | 0.83 | 4.07 | 3.0 | 0.003 | 0.61 | 0.0 | 0.05 | 14.73 | 0.00 | 2.158 | 5.22 | 1.22 | 3.0 | 97.0 | 0.0 | 0.55 | 0.61 | 0.73 | 0.84 | 3.27 | 23847 | 3003 | 6 | 0 | 30 | 0 | 0 | logfile |