Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TJZ	25947	2022-12-14	2022-01-17	4.4	7.00	4.54	4.2	0.019	2.21	0.0	0.00	6.67	0.01	2.384	0.19	0.00	4.2	94.2	1.6	-0.41	0.58	0.63	—	4.3	0.012	0.93	0.0	0.00	5.55	0.00	2.081	10.56	0.00	10.4	89.3	0.3	0.17	0.73	0.79	0.83	—	20228	5056	27	0	0	0	0	logfile
✔	7LWL	23549	2022-12-15	2021-03-01	2.84	3.04	—	3.0	0.013	1.79	2.0	0.09	12.97	0.01	2.505	0.19	0.53	4.2	95.6	0.2	-0.78	0.72	0.83	4.07	3.0	0.004	0.62	0.0	0.05	15.17	0.00	2.131	5.71	1.56	2.9	97.1	0.0	0.34	0.63	0.73	0.85	3.36	23847	3003	6	0	30	0	0	logfile
✔	6oLK	20115	2022-12-14	2019-04-16	4.0	4.14	—	4.1	0.005	1.04	0.0	0.06	5.09	0.01	2.445	0.20	0.00	2.3	97.7	0.0	-0.75	0.56	0.49	—	4.1	0.003	0.69	0.0	0.04	4.93	0.00	2.195	4.38	0.00	8.3	91.7	0.0	-1.09	1.39	0.63	0.59	—	10323	2094	6	0	0	0	0	logfile
✘	7SK6	25174	2022-12-18	2021-10-19	4.0	4.42	—	4.1	0.018	1.92	2.0	0.11	13.16	0.01	2.462	0.21	0.76	4.2	94.0	1.8	0.35	0.52	0.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9144	585	4	0	0	0	4462	logfile
✔	7KE9	22835	2022-12-14	2020-10-10	3.08	3.62	—	3.5	0.013	1.73	0.0	0.09	12.05	0.01	2.491	0.21	0.04	5.8	94.0	0.2	-0.81	0.80	0.80	4.06	3.5	0.002	0.59	0.0	0.04	13.68	0.00	2.161	5.91	0.13	3.1	96.9	0.0	0.38	1.22	0.79	0.83	3.15	22365	2875	18	0	59	0	0	logfile
✔	7LWK	23548	2022-12-15	2021-03-01	2.92	3.11	—	3.1	0.013	1.77	3.0	0.09	12.92	0.01	2.508	0.21	0.65	4.3	95.6	0.1	-0.78	0.71	0.82	3.51	3.1	0.006	0.68	0.0	0.05	15.35	0.00	2.055	5.73	1.91	3.5	96.5	0.0	0.41	1.24	0.73	0.85	2.96	23847	3003	6	0	30	0	0	logfile
✔	7ToY	26041	2022-12-15	2022-01-24	3.53	3.95	—	3.5	0.013	1.76	4.0	0.10	13.48	0.01	2.517	0.21	1.50	6.8	92.8	0.4	-1.10	0.85	0.84	2.97	3.5	0.003	0.59	0.0	0.04	14.09	0.00	2.123	6.36	0.15	4.1	95.8	0.1	0.38	0.49	0.85	0.85	2.11	24673	3049	20	0	61	0	0	logfile
✔	7LWi	23546	2022-12-15	2021-03-01	3.07	3.28	—	3.2	0.013	1.77	1.0	0.09	13.26	0.01	2.478	0.21	1.07	5.3	94.4	0.2	-1.20	0.73	0.79	3.51	3.2	0.005	0.67	0.0	0.05	14.94	0.00	2.103	7.47	0.31	4.4	95.5	0.0	-0.02	0.68	0.73	0.81	2.68	23847	3003	6	0	30	0	0	logfile
✔	7LYK	23593	2022-12-15	2021-03-07	3.65	3.91	—	3.8	0.013	1.73	4.0	0.09	12.85	0.01	2.493	0.22	0.35	6.0	93.7	0.3	-0.98	0.81	0.82	2.68	3.8	0.003	0.59	0.0	0.04	14.13	0.00	2.177	5.50	0.12	3.5	96.5	0.0	0.47	0.58	0.81	0.83	2.01	23444	2983	6	0	25	0	0	logfile
✔	6UQK	20849	2022-12-22	2019-10-20	3.77	4.46	4.11	4.3	0.003	0.53	0.0	0.04	9.91	0.00	2.196	0.22	0.00	5.0	95.0	0.0	-1.84	0.74	0.78	1.71	4.3	0.003	0.60	0.0	0.04	12.63	0.00	2.251	4.46	0.41	7.5	92.5	0.0	1.15	0.61	0.75	0.81	1.93	51567	8032	8	0	188	0	0	logfile
✔	6G8Z	4362	2022-12-13	2018-04-10	3.66	3.88	3.72	3.8	0.005	0.77	0.0	0.04	8.70	0.00	2.362	0.22	0.00	3.8	96.2	0.0	-0.63	0.66	0.79	4.14	3.8	0.002	0.53	0.0	0.04	13.44	0.00	2.214	4.83	0.45	2.8	97.2	0.0	2.54	1.65	0.70	0.85	2.73	15966	1908	6	0	0	0	0	logfile
✔	7LWM	23550	2022-12-15	2021-03-01	2.83	3.01	—	3.0	0.013	1.77	4.0	0.09	12.85	0.01	2.518	0.22	0.59	5.3	94.4	0.4	-0.71	0.72	0.84	4.08	3.0	0.004	0.62	0.0	0.04	15.06	0.00	2.201	4.91	1.69	3.5	96.5	0.1	0.45	0.63	0.72	0.85	3.44	23571	2980	9	0	37	0	0	logfile
✔	7KE8	22834	2022-12-15	2020-10-10	3.26	3.87	—	3.7	0.013	1.72	1.0	0.10	13.27	0.01	2.519	0.23	1.20	6.3	93.6	0.1	-0.97	0.81	0.81	3.16	3.7	0.005	0.65	0.0	0.04	14.28	0.00	2.116	7.64	0.19	4.2	95.8	0.0	-0.11	0.63	0.82	0.83	2.44	23994	2957	21	0	63	0	0	logfile
✔	7TPH	26055	2022-12-14	2022-01-25	3.58	4.03	—	3.6	0.013	1.75	5.0	0.09	12.22	0.01	2.501	0.23	1.01	7.2	92.3	0.6	-1.01	0.84	0.85	3.36	3.6	0.004	0.58	0.0	0.04	12.78	0.00	2.203	4.90	0.00	5.1	94.8	0.1	0.30	1.93	0.84	0.86	2.46	22180	2912	14	0	52	0	0	logfile
✔	7TLB	25986	2022-12-14	2022-01-18	3.06	3.26	—	3.2	0.012	1.74	1.0	0.09	13.14	0.01	2.531	0.24	0.82	5.3	94.7	0.1	-1.00	0.54	0.56	2.31	3.2	0.005	0.65	0.0	0.05	15.07	0.00	2.092	7.78	0.16	3.7	96.3	0.0	0.00	1.52	0.76	0.86	2.78	22806	2916	3	0	0	0	0	logfile
✔	7TLD	25988	2022-12-14	2022-01-18	2.89	3.35	—	3.3	0.013	1.80	0.0	0.09	13.31	0.01	2.524	0.24	0.94	5.2	94.6	0.2	-1.25	0.33	0.48	3.75	3.3	0.004	0.61	0.0	0.04	15.36	0.00	2.157	6.38	1.68	3.5	96.5	0.0	0.09	0.61	0.62	0.79	3.01	22812	2916	3	0	0	0	0	logfile
✔	7LWQ	23554	2022-12-14	2021-03-01	3.44	3.73	—	3.6	0.013	1.77	3.0	0.10	13.71	0.01	2.519	0.24	1.18	6.6	93.1	0.4	-1.34	0.77	0.79	2.74	3.6	0.003	0.60	1.0	0.04	14.92	0.00	2.152	7.27	0.38	4.0	96.0	0.0	0.24	1.26	0.78	0.81	2.06	19273	2425	7	0	29	0	0	logfile
✔	7TLC	25987	2022-12-14	2022-01-18	2.83	3.28	—	3.2	0.013	1.82	3.0	0.10	13.37	0.02	2.518	0.24	1.54	5.3	94.5	0.2	-1.18	0.34	0.47	4.12	3.2	0.004	0.64	0.0	0.05	15.55	0.00	2.120	6.14	2.20	3.9	96.1	0.0	0.00	0.60	0.51	0.71	3.51	23058	2948	3	0	0	0	0	logfile
✔	7LWN	23551	2022-12-15	2021-03-01	2.94	3.14	—	3.1	0.013	1.76	4.0	0.09	12.63	0.01	2.516	0.24	0.87	4.6	95.1	0.3	-0.76	0.74	0.83	3.80	3.1	0.003	0.59	0.0	0.04	15.01	0.00	2.197	5.38	1.97	2.7	97.3	0.0	0.39	0.61	0.75	0.82	3.08	23570	2980	11	0	37	0	0	logfile
✔	7RLU	24547	2022-12-14	2021-07-26	2.9	2.95	2.85	3.0	0.010	1.28	0.0	0.07	13.03	0.01	2.582	0.25	0.31	5.3	94.0	0.7	-3.29	0.73	0.82	4.31	3.0	0.004	0.61	0.0	0.04	16.96	0.00	2.294	3.53	1.09	4.0	96.0	0.0	0.08	1.64	0.75	0.88	3.07	18188	2332	12	0	8	28	0	logfile

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