Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TPH	26055	2023-08-17	2022-01-25	3.58	4.03	—	3.6	0.013	1.76	5.0	0.10	12.39	0.01	2.501	0.16	1.01	7.2	92.3	0.6	-1.01	0.84	0.85	3.36	3.6	0.003	0.58	0.0	0.04	12.96	0.00	2.211	4.62	0.14	4.7	95.2	0.1	0.29	1.93	0.84	0.86	2.45	22180	2912	14	0	52	0	0	logfile
✔	7N5G	24189	2023-08-09	2021-06-05	2.4	2.16	2.42	1.5	0.022	1.51	0.0	0.09	10.57	0.01	2.386	0.17	0.00	0.8	99.2	0.0	1.84	0.40	0.79	3.64	1.5	0.003	0.57	0.0	0.04	16.52	0.00	2.220	4.78	2.61	1.4	98.6	0.0	2.92	1.20	0.39	0.80	2.57	2926	371	1	0	1	0	0	logfile
✔	7LYL	23594	2023-08-17	2021-03-07	3.72	4.02	—	3.8	0.013	1.70	2.0	0.09	13.11	0.01	2.538	0.17	0.69	5.7	94.2	0.1	-1.00	0.81	0.83	2.52	3.8	0.003	0.62	0.0	0.04	14.22	0.00	2.100	6.45	0.19	3.7	96.3	0.0	0.52	0.62	0.82	0.84	1.98	23826	3003	6	0	28	0	0	logfile
✔	7NCJ	12268	2023-08-12	2021-01-28	4.23	3.11	3.97	4.5	0.011	1.60	2.0	0.10	13.68	0.01	2.444	0.18	0.76	7.7	92.0	0.3	-2.36	0.65	0.46	—	4.5	0.003	0.60	1.0	0.05	13.98	0.00	1.897	13.84	0.00	11.2	88.8	0.0	-2.88	1.39	0.69	0.58	—	10860	774	12	0	0	0	5586	logfile
✔	7ToU	26038	2023-08-18	2022-01-24	3.24	3.49	—	3.3	0.014	1.82	8.0	0.11	13.56	0.01	2.517	0.18	1.20	6.2	93.2	0.7	-1.00	0.84	0.85	3.52	3.3	0.003	0.60	0.0	0.04	14.04	0.00	2.134	5.38	0.04	4.2	95.7	0.0	0.51	0.57	0.85	0.87	2.72	24687	3050	20	0	61	0	0	logfile
✔	6UJA	20794	2023-08-10	2019-10-02	3.3	3.49	—	3.4	0.014	1.49	0.0	0.09	10.46	0.01	1.802	0.19	0.14	2.7	97.1	0.2	0.28	0.82	0.82	3.35	3.4	0.004	0.65	0.0	0.05	13.99	0.00	2.008	6.45	0.55	3.4	96.6	0.0	0.13	1.49	0.83	0.85	3.06	8224	1128	10	0	23	0	0	logfile
✔	7TJZ	25947	2023-08-16	2022-01-17	4.4	7.00	4.54	4.2	0.019	2.21	0.0	0.00	6.67	0.01	2.384	0.19	0.00	4.2	94.2	1.6	-0.41	0.58	0.63	—	4.2	0.017	1.19	0.0	0.00	6.51	0.01	2.047	16.64	0.00	13.2	86.4	0.3	-1.19	0.80	0.82	0.83	—	20228	5056	27	0	0	0	0	logfile
✔	8CSA	26961	2023-08-17	2022-05-12	3.84	4.24	3.87	3.9	0.012	1.75	3.0	0.09	13.74	0.02	2.527	0.19	1.18	6.0	93.8	0.2	-1.46	0.82	0.78	0.63	3.9	0.004	0.67	0.0	0.04	15.01	0.00	2.101	12.64	0.23	4.2	95.8	0.0	0.02	1.66	0.83	0.79	0.26	23442	3003	3	0	0	0	0	logfile
✔	8G6K	29772	2023-08-11	2023-02-15	3.6	3.71	3.52	3.4	0.002	0.48	0.0	0.04	4.19	0.00	2.523	0.20	0.00	2.7	97.3	0.0	1.65	0.54	0.71	—	3.5	0.003	0.60	0.0	0.04	4.50	0.00	2.284	2.64	0.00	6.7	93.3	0.0	0.05	1.47	0.54	0.74	—	9388	1379	7	0	0	0	2576	logfile
✔	6oLK	20115	2023-08-16	2019-04-16	4.0	4.14	—	4.1	0.005	1.04	0.0	0.06	5.09	0.01	2.445	0.20	0.00	2.3	97.7	0.0	-0.75	0.56	0.49	—	4.1	0.005	0.93	0.0	0.05	7.00	0.00	2.045	9.16	0.00	14.0	86.0	0.0	-2.47	1.44	0.64	0.61	—	10323	2094	6	0	0	0	0	logfile
✔	6X2C	22001	2023-08-17	2020-05-20	3.2	3.70	3.21	3.6	0.013	1.81	6.0	0.09	13.39	0.02	2.550	0.20	3.17	5.3	94.4	0.3	-1.74	0.79	0.81	3.48	3.6	0.003	0.59	0.0	0.04	13.81	0.00	2.226	5.41	0.08	3.7	96.3	0.0	0.19	1.24	0.80	0.85	3.02	22800	2913	3	0	0	0	0	logfile
✔	7TP1	26045	2023-08-18	2022-01-24	3.81	4.30	—	3.8	0.014	1.75	5.0	0.10	13.73	0.01	2.523	0.21	1.39	6.7	92.4	0.9	-1.32	0.85	0.84	1.81	3.8	0.005	0.72	0.0	0.04	14.38	0.00	2.062	9.68	0.15	6.3	93.7	0.0	-0.23	1.20	0.86	0.85	1.65	24646	3046	20	0	61	0	0	logfile
✔	7TP2	26046	2023-08-18	2022-01-24	3.72	4.22	—	3.7	0.014	1.76	6.0	0.10	13.76	0.01	2.529	0.21	1.32	7.2	92.4	0.4	-1.34	0.85	0.84	2.45	3.7	0.006	0.69	0.0	0.04	14.15	0.00	2.107	8.05	0.15	5.6	94.3	0.1	-0.27	0.47	0.85	0.85	1.77	24663	3047	20	0	61	0	0	logfile
✔	7QKJ	14044	2023-08-10	2021-12-17	3.26	3.08	3.11	3.2	0.012	2.04	12.0	0.16	11.59	0.01	2.510	0.21	0.00	9.9	90.1	0.0	-2.24	0.35	0.71	3.92	3.2	0.005	0.79	0.0	0.05	15.54	0.00	2.135	10.82	0.25	7.9	92.1	0.0	-2.54	1.07	0.36	0.85	3.02	6888	900	12	0	0	0	0	logfile
✔	6G8Z	4362	2023-08-14	2018-04-10	3.66	3.88	3.72	3.8	0.005	0.77	0.0	0.04	8.70	0.00	2.362	0.22	0.00	3.8	96.2	0.0	-0.63	0.66	0.79	4.14	3.8	0.004	0.60	0.0	0.04	13.40	0.00	2.213	5.17	0.06	3.9	96.1	0.0	2.38	1.65	0.70	0.85	2.82	15966	1908	6	0	0	0	0	logfile
✔	6UQK	20849	2023-08-27	2019-10-20	3.77	4.46	4.11	4.3	0.003	0.53	0.0	0.04	9.91	0.00	2.196	0.22	0.00	5.0	95.0	0.0	-1.84	0.74	0.78	1.71	4.3	0.002	0.59	0.0	0.04	12.68	0.00	2.246	3.91	0.26	6.1	93.9	0.0	1.04	0.62	0.75	0.80	1.88	51567	8032	8	0	188	0	0	logfile
✔	7SG4	25105	2023-08-20	2021-10-04	3.43	4.18	—	3.5	0.014	1.91	30.0	0.12	13.29	0.02	2.531	0.22	2.01	9.5	88.9	1.6	-2.14	0.84	0.82	2.83	3.5	0.003	0.71	0.0	0.05	13.79	0.00	2.025	9.90	0.10	8.3	91.5	0.2	-0.77	1.24	0.85	0.82	1.84	28709	3737	8	0	47	0	0	logfile
✔	7L6o	23124	2023-08-21	2020-12-23	3.9	4.18	3.92	3.9	0.016	2.00	2.0	0.12	14.17	0.02	2.534	0.23	0.70	8.2	91.1	0.7	-1.91	0.83	0.80	3.20	3.9	0.003	0.62	0.0	0.04	14.43	0.00	1.939	5.88	0.19	5.1	94.9	0.0	-0.75	1.22	0.83	0.80	2.18	29270	1776	51	0	132	0	13598	logfile
✔	6U7H	20668	2023-08-17	2019-09-02	3.1	3.91	3.18	3.6	0.013	1.78	33.0	0.11	13.27	0.01	2.282	0.24	0.24	4.3	95.7	0.0	-0.94	0.86	0.85	3.84	3.6	0.003	0.59	0.0	0.04	13.74	0.00	2.291	6.30	0.16	3.2	96.8	0.0	0.49	1.23	0.85	0.84	3.09	23394	2895	21	0	81	0	0	logfile
✔	7KQE	22997	2023-08-15	2020-11-15	2.88	3.80	2.90	3.4	0.012	1.80	8.0	0.10	13.99	0.01	2.478	0.25	1.08	6.3	93.6	0.1	-1.09	0.73	0.37	2.42	2.9	0.003	0.59	0.0	0.04	14.25	0.00	2.025	4.55	0.77	4.4	95.6	0.0	-0.11	0.67	0.87	0.83	2.31	68370	4467	9	0	0	0	33744	logfile

• ← previous
• Page 6 of 542
• next →