Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6VGK	21197	2023-04-25	2020-01-08	3.1	3.32	—	3.4	0.020	1.84	0.0	0.09	9.91	0.01	2.394	0.31	0.00	3.4	95.8	0.8	-0.29	0.54	0.69	4.26	3.4	0.006	0.72	0.0	0.05	14.02	0.00	2.173	9.12	0.40	4.3	95.5	0.3	1.56	0.64	0.66	0.81	3.37	19222	2513	14	0	0	0	0	logfile
✔	7N5D	24186	2023-04-25	2021-06-05	2.8	2.25	—	1.3	0.023	1.52	0.0	0.09	9.91	0.01	2.378	0.32	0.00	1.1	98.9	0.0	1.83	0.84	0.83	4.14	1.3	0.003	0.64	0.0	0.04	16.00	0.00	2.173	6.93	1.62	1.9	98.1	0.0	2.44	0.66	0.82	0.82	3.20	20593	2612	14	0	7	0	0	logfile
✔	7TXZ	26162	2023-04-22	2022-02-10	3.2	3.25	3.11	3.2	0.017	1.50	0.0	0.10	10.13	0.01	2.400	0.32	0.19	1.9	98.0	0.1	0.71	0.71	0.79	4.26	3.2	0.003	0.64	0.0	0.05	13.80	0.00	2.101	7.62	0.38	3.5	96.4	0.1	0.16	0.55	0.72	0.84	3.88	11303	1464	22	0	29	0	0	logfile
✔	6ZMS	11300	2023-04-22	2020-07-03	3.4	3.78	—	3.8	0.019	1.98	3.0	0.10	14.13	0.01	2.427	0.32	2.12	5.6	91.4	3.0	-2.88	0.40	0.72	1.84	3.7	0.004	0.64	0.0	0.04	15.70	0.00	2.031	5.57	0.14	6.2	93.4	0.4	-1.93	1.76	0.35	0.84	3.57	12570	818	4	0	0	0	6173	logfile
✔	6C0V	7325	2023-04-21	2018-01-02	3.4	3.67	—	3.9	0.008	1.14	0.0	0.06	12.84	0.00	1.961	0.33	0.00	4.3	95.7	0.0	-2.20	0.42	0.67	2.82	3.8	0.003	0.63	0.0	0.04	16.30	0.00	1.939	7.86	0.96	2.8	97.2	0.0	1.00	1.45	0.58	0.86	2.33	8976	1154	1	0	4	0	0	logfile
✔	6UJB	20795	2023-04-21	2019-10-02	3.51	3.73	—	3.6	0.014	1.45	0.0	0.08	10.93	0.01	1.782	0.33	0.00	2.7	97.3	0.0	0.55	0.77	0.83	3.18	3.6	0.004	0.61	0.0	0.05	14.67	0.00	2.140	7.36	0.11	3.5	96.5	0.0	-0.10	0.73	0.79	0.85	3.00	9193	1180	11	0	23	0	0	logfile
✘	7LWJ	23547	2023-04-26	2021-03-01	3.24	3.45	—	3.3	0.014	1.83	2.0	0.10	13.55	0.01	2.482	0.34	0.84	7.0	92.8	0.2	-1.78	0.70	0.68	1.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23840	3003	6	0	30	0	0	logfile
✔	6X2B	22000	2023-04-25	2020-05-20	3.6	4.27	3.73	3.9	0.012	1.74	2.0	0.09	13.17	0.01	2.530	0.34	2.08	6.7	92.9	0.4	-1.71	0.77	0.76	2.50	3.9	0.003	0.59	0.0	0.04	13.26	0.00	2.164	6.09	0.05	4.0	96.0	0.0	0.45	0.52	0.83	0.82	2.06	21120	2861	3	0	0	0	0	logfile
✘	7PMN	13539	2023-04-28	2021-09-02	3.2	3.93	—	3.5	0.007	0.94	0.0	0.05	14.26	0.01	1.984	0.34	0.55	2.9	97.1	0.0	-0.35	0.79	0.71	2.00	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	74640	9131	28	67	11	0	0	logfile
✔	7KQB	22993	2023-04-22	2020-11-14	2.42	3.64	2.56	2.6	0.012	1.79	14.0	0.10	13.80	0.01	2.506	0.35	1.23	5.3	94.4	0.2	-1.06	0.79	0.62	3.08	2.6	0.004	0.59	0.0	0.04	14.14	0.00	2.046	4.77	0.76	4.6	95.4	0.0	-0.37	0.57	0.89	0.85	2.66	63309	4105	10	0	23	0	31094	logfile
✔	7K45	22660	2023-04-19	2020-09-14	3.7	3.90	3.76	3.9	0.014	1.42	0.0	0.08	9.48	0.01	2.568	0.35	0.00	2.2	97.8	0.0	0.92	0.79	0.78	4.02	3.9	0.003	0.67	0.0	0.04	14.29	0.00	2.252	7.78	0.00	2.7	97.3	0.0	0.21	1.29	0.81	0.80	2.65	3038	419	4	0	2	0	0	logfile
✔	7N5E	24187	2023-04-24	2021-06-05	2.8	2.16	2.68	1.5	0.023	1.54	0.0	0.09	10.26	0.01	2.378	0.36	0.00	1.2	98.8	0.0	1.87	0.80	0.80	4.07	1.9	0.003	0.58	0.0	0.04	16.11	0.00	2.127	6.31	1.10	1.8	98.2	0.0	2.74	0.58	0.78	0.79	3.16	17915	2176	14	0	7	0	0	logfile
✔	7JW0	22512	2023-04-27	2020-08-24	4.3	4.63	4.41	4.4	0.010	1.54	6.0	0.10	8.01	0.01	2.527	0.37	0.00	2.3	97.5	0.1	1.05	0.81	0.71	—	4.4	0.003	0.64	0.0	0.05	9.97	0.00	2.180	5.50	0.00	3.4	96.6	0.0	0.41	1.28	0.85	0.79	—	26251	4314	27	0	69	0	0	logfile
✔	8EEY	28065	2023-04-25	2022-09-07	2.53	2.25	2.57	2.5	0.006	0.88	0.0	0.05	15.16	0.01	1.937	0.37	0.14	1.8	98.1	0.0	0.01	0.60	0.80	4.57	2.5	0.004	0.65	0.0	0.05	17.51	0.01	2.162	4.49	2.48	2.3	97.6	0.0	0.74	0.67	0.64	0.87	3.81	20886	2393	6	66	4	0	0	logfile
✔	7MN6	23917	2023-04-21	2021-04-30	3.09	3.68	3.18	3.5	0.013	1.51	0.0	0.08	11.14	0.01	2.392	0.37	0.00	3.5	96.4	0.2	-0.15	0.85	0.85	3.26	3.5	0.004	0.64	0.0	0.05	13.71	0.00	2.208	5.21	0.38	4.4	95.5	0.1	-0.05	1.10	0.84	0.86	3.25	9649	1227	8	0	13	0	0	logfile
✔	7STL	25432	2023-04-27	2021-11-14	2.95	3.30	—	3.2	0.004	0.75	0.0	0.04	10.31	0.00	2.190	0.38	0.15	2.3	97.7	0.0	1.82	0.67	0.82	3.24	3.2	0.004	0.48	0.0	0.04	13.91	0.00	2.104	2.76	0.59	3.5	96.3	0.1	1.65	0.57	0.66	0.84	3.21	25668	1600	4	0	8	0	12568	logfile
✔	7KE7	22833	2023-04-26	2020-10-10	3.32	3.94	—	3.7	0.014	1.74	5.0	0.10	13.16	0.02	2.502	0.38	0.08	7.5	92.2	0.3	-1.34	0.75	0.69	2.06	3.7	0.005	0.72	0.0	0.05	14.48	0.00	2.124	10.07	0.31	5.3	94.7	0.0	-0.44	0.66	0.81	0.77	1.73	23688	2916	21	0	63	0	0	logfile
✔	8G0C	29653	2023-04-25	2023-01-31	2.8	3.69	2.84	2.8	0.005	0.85	0.0	0.17	6.80	0.00	1.814	0.39	0.00	2.6	97.3	0.0	0.98	0.69	0.67	—	2.8	0.006	0.79	0.0	0.07	5.95	0.00	1.778	2.08	0.00	9.1	90.9	0.0	0.66	1.21	0.79	0.80	—	19874	4860	30	0	16	0	0	logfile
✔	7KEA	22836	2023-04-26	2020-10-10	3.33	3.98	—	3.8	0.013	1.84	6.0	0.10	13.79	0.01	1.103	0.39	1.24	7.2	92.4	0.4	-1.82	0.81	0.76	2.96	3.7	0.005	0.69	0.0	0.04	14.31	0.00	2.170	9.50	0.13	4.4	95.6	0.0	-0.28	0.65	0.82	0.80	2.32	22351	2875	18	0	58	0	0	logfile
✔	7KNA	22937	2023-04-22	2020-11-04	3.3	3.42	2.98	3.3	0.016	1.47	0.0	0.10	10.15	0.01	2.426	0.40	0.50	1.9	97.9	0.2	0.26	0.83	0.81	4.04	3.3	0.003	0.54	0.0	0.04	13.39	0.00	2.241	5.13	0.08	2.7	97.3	0.0	0.60	0.55	0.84	0.84	3.47	11593	1449	12	0	24	0	0	logfile

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