Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SoD	25267	2023-04-20	2021-10-29	3.2	3.43	3.21	3.4	0.011	1.24	0.0	0.08	9.29	0.01	2.129	0.40	0.49	2.4	97.6	0.0	1.01	0.70	0.86	5.20	3.4	0.005	0.58	0.0	0.04	12.95	0.00	2.297	3.20	0.25	3.5	96.5	0.0	0.95	1.54	0.67	0.90	5.59	3830	473	5	0	7	0	0	logfile
✘	6oLL	20116	2023-04-25	2019-04-16	4.1	4.59	—	4.4	0.004	1.05	0.0	0.06	6.94	0.01	2.400	0.40	0.00	2.0	97.8	0.2	-0.51	0.67	0.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10426	2114	6	0	0	0	0	logfile
✔	7TPL	26059	2023-04-25	2022-01-25	3.87	4.36	—	3.8	0.013	1.79	10.0	0.10	14.15	0.02	2.519	0.40	1.94	8.6	90.3	1.1	-1.79	0.84	0.83	2.53	3.8	0.005	0.72	0.0	0.04	14.84	0.00	2.040	10.43	0.19	7.9	91.9	0.1	-0.45	0.55	0.84	0.83	1.62	19992	2485	18	0	46	0	0	logfile
✔	7KNA	22937	2023-04-22	2020-11-04	3.3	3.42	2.98	3.3	0.016	1.47	0.0	0.10	10.15	0.01	2.426	0.40	0.50	1.9	97.9	0.2	0.26	0.83	0.81	4.04	3.3	0.003	0.54	0.0	0.04	13.39	0.00	2.241	5.13	0.08	2.7	97.3	0.0	0.60	0.55	0.84	0.84	3.47	11593	1449	12	0	24	0	0	logfile
✔	6T90	10406	2023-04-22	2019-10-25	3.05	3.74	—	3.3	0.022	1.52	0.0	0.09	24.61	0.01	2.459	0.40	0.00	0.3	99.7	0.0	1.02	0.84	0.81	4.34	3.3	0.004	0.59	0.0	0.03	26.53	0.00	2.050	6.29	0.40	1.4	98.6	0.0	3.02	2.93	0.86	0.87	2.63	13031	903	19	282	9	0	0	logfile
✘	7LMS	23441	2023-04-20	2021-02-05	3.5	4.13	3.61	4.0	0.019	1.52	0.0	0.09	10.07	0.01	2.432	0.41	0.00	0.2	99.8	0.0	0.57	0.81	0.83	3.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4947	613	4	0	1	0	0	logfile
✔	7LCN	23277	2023-04-24	2021-01-11	3.35	3.96	—	3.5	0.014	1.95	26.0	0.12	14.38	0.02	2.509	0.43	2.55	9.4	89.0	1.6	-2.18	0.83	0.73	2.09	3.5	0.003	0.65	0.0	0.04	14.50	0.00	1.856	7.41	0.24	7.2	92.4	0.4	-1.46	0.68	0.84	0.74	1.86	66313	4296	27	0	63	0	32245	logfile
✔	5UAK	8516	2023-04-21	2016-12-19	3.87	4.12	—	4.2	0.008	1.08	0.0	0.06	13.28	0.00	2.474	0.43	0.00	4.3	95.7	0.0	-3.02	0.42	0.62	1.39	4.1	0.003	0.75	0.0	0.04	16.32	0.00	2.186	12.57	0.60	3.4	96.6	0.0	0.68	1.57	0.53	0.76	1.17	9232	1139	2	0	19	0	0	logfile
✔	7K4N	22668	2023-04-27	2020-09-15	3.3	3.50	3.37	3.4	0.013	1.41	0.0	0.09	9.54	0.01	2.431	0.43	0.00	2.7	97.3	0.0	0.95	0.80	0.80	4.31	3.4	0.004	0.61	0.0	0.05	13.06	0.00	2.214	5.51	0.31	2.3	97.7	0.0	0.99	0.57	0.83	0.85	3.78	25353	3654	27	0	63	0	0	logfile
✔	7S6i	24876	2023-04-27	2021-09-14	3.2	3.55	3.30	3.5	0.022	1.73	0.0	0.12	10.14	0.01	2.394	0.44	0.10	3.2	96.8	0.0	0.33	0.81	0.85	4.14	3.5	0.003	0.64	0.0	0.04	13.58	0.00	2.185	4.42	0.17	3.3	96.7	0.1	-0.06	1.34	0.82	0.88	3.62	26772	3309	24	0	66	0	0	logfile
✔	6UJC	20796	2023-04-21	2019-10-02	3.56	3.89	—	3.9	0.014	1.40	0.0	0.09	10.61	0.01	1.792	0.44	0.11	3.0	97.0	0.0	0.47	0.72	0.75	2.35	3.9	0.004	0.68	0.0	0.04	13.44	0.00	1.978	8.12	0.21	4.9	95.1	0.0	-0.22	0.75	0.75	0.79	2.12	9209	1184	11	0	23	0	0	logfile
✔	7WWB	32865	2023-04-20	2022-02-12	3.86	4.08	—	4.1	0.008	0.97	0.0	0.07	9.51	0.01	2.511	0.45	0.00	2.5	97.5	0.0	0.18	0.48	0.76	2.65	4.1	0.004	0.75	0.0	0.04	15.89	0.01	2.208	9.75	1.01	4.8	94.9	0.3	-0.24	1.66	0.51	0.80	2.12	5428	666	4	0	4	0	0	logfile
✔	6DJP	7939	2023-04-20	2018-05-25	4.8	5.02	—	4.8	0.012	2.01	0.0	0.08	4.72	0.01	2.368	0.45	0.00	4.6	95.4	0.0	-0.74	0.76	0.65	—	4.8	0.007	1.19	0.0	0.05	8.16	0.01	2.172	17.74	0.00	22.8	77.2	0.1	-4.06	1.20	0.82	0.76	—	7307	1393	16	0	23	0	0	logfile
✔	7KFH	22853	2023-04-22	2020-10-13	3.8	3.87	—	3.8	0.021	1.76	0.0	0.11	10.27	0.01	2.360	0.45	0.21	1.8	97.8	0.4	1.11	0.69	0.85	3.27	3.8	0.003	0.68	0.0	0.04	14.04	0.00	2.174	7.80	0.71	3.4	96.4	0.2	0.16	1.37	0.70	0.85	2.37	13575	1695	21	0	30	0	0	logfile
✔	7RSN	24675	2023-04-25	2021-08-11	3.49	3.85	3.57	3.9	0.023	1.84	3.0	0.14	10.53	0.01	2.296	0.46	0.00	4.0	95.6	0.4	0.48	0.73	0.82	2.83	3.9	0.004	0.73	0.0	0.04	15.16	0.00	2.107	9.36	0.30	6.2	93.5	0.3	-0.48	1.61	0.69	0.83	2.12	19623	2310	33	0	99	0	0	logfile
✔	6X97	22103	2023-04-24	2020-06-02	3.65	4.17	3.77	4.1	0.022	1.77	0.0	0.14	10.62	0.01	2.496	0.46	0.30	2.1	97.9	0.0	0.36	0.77	0.80	2.77	4.1	0.003	0.73	0.0	0.04	15.26	0.00	2.192	11.11	0.40	5.0	94.9	0.1	-0.35	0.87	0.77	0.81	2.50	18873	2319	30	0	60	0	0	logfile
✔	7RL0	24512	2023-04-27	2021-07-22	2.8	2.88	—	2.9	0.014	2.04	48.0	0.11	14.56	0.02	1.912	0.47	1.08	2.5	97.3	0.2	-1.35	0.40	0.48	2.19	2.9	0.009	0.80	0.0	0.05	17.05	0.01	1.762	12.73	2.68	3.8	96.0	0.2	0.07	1.16	0.52	0.69	2.15	106080	6708	24	0	48	0	52716	logfile
✔	7JV4	22492	2023-04-27	2020-08-20	3.4	3.60	3.45	3.5	0.012	1.40	1.0	0.09	9.65	0.01	2.412	0.47	0.10	2.5	97.5	0.0	0.74	0.77	0.78	3.10	3.5	0.003	0.57	0.0	0.04	12.47	0.00	2.228	6.01	0.19	2.7	97.3	0.0	0.74	1.21	0.80	0.83	3.03	25162	3568	23	0	58	0	0	logfile
✘	7MN5	23916	2023-04-21	2021-04-30	2.93	3.53	3.04	3.3	0.013	1.46	0.0	0.08	10.99	0.01	2.311	0.48	0.00	3.3	96.7	0.0	-0.05	0.82	0.81	3.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9526	1213	8	0	13	0	0	logfile
✔	6WPT	21865	2023-04-27	2020-04-27	3.7	3.95	3.74	3.8	0.012	1.35	0.0	0.09	9.79	0.01	1.930	0.48	0.09	1.9	98.0	0.1	0.62	0.76	0.76	2.77	3.8	0.004	0.65	0.0	0.04	13.42	0.00	2.171	7.13	0.27	3.0	96.9	0.1	0.30	1.27	0.79	0.80	2.54	24326	3277	22	0	65	0	0	logfile

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