Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LYP	23598	2022-12-15	2021-03-07	4.05	4.38	—	4.1	0.013	1.73	0.0	0.09	13.00	0.01	2.509	0.39	0.71	6.7	92.7	0.6	-1.22	0.82	0.81	—	4.1	0.002	0.60	0.0	0.04	12.60	0.00	2.114	8.50	0.00	4.4	95.6	0.0	0.35	1.28	0.82	0.81	—	23504	2985	6	0	28	0	0	logfile
✔	6oLL	20116	2022-12-14	2019-04-16	4.1	4.59	—	4.4	0.004	1.05	0.0	0.06	6.94	0.01	2.400	0.40	0.00	2.0	97.8	0.2	-0.51	0.67	0.58	—	4.4	0.004	0.78	0.0	0.04	5.43	0.00	2.174	5.73	0.00	13.1	86.9	0.0	-2.32	2.07	0.74	0.68	—	10426	2114	6	0	0	0	0	logfile
✔	6X2C	22001	2022-12-14	2020-05-20	3.2	3.70	3.21	3.6	0.013	1.81	6.0	0.09	13.39	0.02	2.550	0.40	3.17	5.3	94.4	0.3	-1.74	0.79	0.81	3.48	3.6	0.005	0.63	0.0	0.04	13.95	0.00	2.205	5.79	0.20	4.4	95.6	0.0	-0.06	1.24	0.80	0.84	3.10	22800	2913	3	0	0	0	0	logfile
✔	7LJR	23400	2022-12-15	2021-01-30	3.66	3.92	—	3.7	0.013	1.83	9.0	0.10	13.96	0.01	2.509	0.40	1.12	9.2	90.0	0.8	-1.91	0.69	0.65	1.95	3.7	0.004	0.68	0.0	0.04	14.72	0.00	2.075	11.83	0.14	6.4	93.5	0.1	-0.82	0.66	0.78	0.77	1.54	26291	3378	5	0	0	0	0	logfile
✔	7KQE	22997	2022-12-14	2020-11-15	2.88	3.80	2.90	3.4	0.012	1.80	8.0	0.10	13.99	0.01	2.478	0.40	1.08	6.3	93.6	0.1	-1.09	0.73	0.37	2.42	2.9	0.003	0.59	0.0	0.04	14.26	0.00	2.022	4.39	0.72	4.5	95.5	0.0	-0.04	1.53	0.88	0.84	2.40	68370	4467	9	0	0	0	33744	logfile
✔	7N5D	24186	2022-12-14	2021-06-05	2.8	2.25	—	1.3	0.023	1.52	0.0	0.09	9.91	0.01	2.378	0.41	0.00	1.1	98.9	0.0	1.83	0.84	0.83	4.14	1.3	0.003	0.62	0.0	0.04	15.99	0.00	2.173	6.76	1.81	1.7	98.3	0.0	2.42	0.65	0.82	0.83	3.12	20593	2612	14	0	7	0	0	logfile
✔	6PZK	20536	2022-12-13	2019-08-01	3.2	3.65	—	3.6	0.012	1.93	16.0	0.12	14.42	0.02	2.533	0.41	1.95	3.8	96.2	0.0	-2.86	0.65	0.75	2.57	3.6	0.003	0.62	0.0	0.04	16.17	0.00	2.175	10.01	0.13	1.7	98.3	0.0	1.50	1.70	0.73	0.82	1.86	13153	1624	5	0	0	0	0	logfile
✔	7KDG	22821	2022-12-15	2020-10-08	3.01	3.39	—	3.3	0.013	1.75	3.0	0.10	12.56	0.01	2.515	0.41	0.31	6.2	93.5	0.3	-0.92	0.77	0.78	3.64	3.3	0.006	0.74	0.0	0.05	13.90	0.00	2.094	6.78	0.00	3.1	96.9	0.0	0.21	1.20	0.73	0.80	2.72	23700	2916	21	0	63	0	0	logfile
✔	6X2B	22000	2022-12-14	2020-05-20	3.6	4.27	3.73	3.9	0.012	1.74	2.0	0.09	13.17	0.01	2.530	0.42	2.08	6.7	92.9	0.4	-1.71	0.77	0.76	2.50	3.9	0.002	0.58	0.0	0.04	13.24	0.00	2.177	6.01	0.23	3.7	96.3	0.0	0.49	0.51	0.83	0.82	2.08	21120	2861	3	0	0	0	0	logfile
✘	7KDK	22825	2022-12-18	2020-10-08	2.8	3.18	—	3.1	0.013	1.77	8.0	0.10	12.82	0.01	2.490	0.43	0.12	5.2	94.7	0.1	-0.98	0.75	0.77	3.89	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23688	2916	21	0	63	0	0	logfile
✔	7TP0	26043	2022-12-15	2022-01-24	3.57	3.99	—	3.6	0.013	1.75	4.0	0.10	13.44	0.01	2.527	0.43	1.62	6.6	92.6	0.8	-1.08	0.85	0.85	2.66	3.6	0.006	0.69	0.0	0.04	14.02	0.00	1.985	8.08	0.30	5.8	94.0	0.2	-0.09	1.19	0.86	0.86	2.30	24589	3040	20	0	61	0	0	logfile
✔	7PMK	13537	2022-12-15	2021-09-02	3.2	3.87	—	3.5	0.007	0.94	1.0	0.05	14.19	0.01	1.956	0.43	0.32	2.5	97.4	0.0	-0.22	0.78	0.73	1.95	3.5	0.003	0.61	0.0	0.04	15.43	0.00	1.935	8.34	0.12	2.5	97.5	0.0	1.06	1.19	0.78	0.78	1.46	74697	9129	29	69	13	0	0	logfile
✔	7SCY	25042	2022-12-14	2021-09-29	4.1	6.14	—	5.6	0.014	1.93	1.0	0.09	27.69	0.04	2.508	0.43	0.56	2.8	97.2	0.0	-0.81	0.82	0.67	—	5.6	0.006	0.68	0.0	0.05	27.57	0.00	1.824	19.05	0.00	4.4	95.6	0.0	0.44	1.07	0.87	0.79	—	23206	850	11	294	0	0	10436	logfile
✔	7JW0	22512	2022-12-15	2020-08-24	4.3	4.63	4.41	4.4	0.010	1.51	6.0	0.09	8.08	0.01	2.527	0.43	0.00	2.3	97.5	0.1	1.05	0.81	0.71	—	4.4	0.004	0.66	0.0	0.05	9.79	0.00	2.148	5.98	0.09	3.9	96.1	0.0	0.36	1.27	0.85	0.79	—	26251	4314	27	0	69	0	0	logfile
✔	8EEY	28065	2022-12-14	2022-09-07	2.53	2.25	2.57	2.5	0.006	0.88	0.0	0.05	15.16	0.01	1.937	0.44	0.14	1.8	98.1	0.0	0.01	0.60	0.80	4.57	2.5	0.005	0.69	0.0	0.05	17.50	0.01	2.146	4.17	2.33	2.6	97.3	0.0	0.73	0.67	0.64	0.87	3.89	20886	2393	6	66	4	0	0	logfile
✔	7oSL	13054	2022-12-22	2021-06-09	3.1	2.94	3.08	3.1	0.010	1.26	0.0	0.07	12.14	0.01	2.374	0.44	0.00	1.3	98.7	0.0	-2.09	0.61	0.67	2.20	3.1	0.002	0.53	0.0	0.04	14.71	0.00	2.203	2.82	0.07	2.1	97.9	0.0	1.19	0.75	0.73	0.79	1.81	47885	2935	9	0	0	0	24225	logfile
✔	6DJP	7939	2022-12-11	2018-05-25	4.8	5.02	—	4.8	0.011	2.00	0.0	0.08	5.34	0.01	2.368	0.45	0.00	4.6	95.4	0.0	-0.74	0.76	0.65	—	4.8	0.003	0.86	0.0	0.05	5.94	0.00	2.257	6.66	0.00	10.3	89.7	0.0	-2.64	1.07	0.81	0.74	—	7307	1393	16	0	23	0	0	logfile
✔	6WPS	21864	2022-12-16	2020-04-27	3.1	3.36	3.25	3.3	0.013	1.32	0.0	0.09	10.34	0.01	2.364	0.45	0.10	2.4	97.6	0.0	0.67	0.73	0.74	3.01	3.3	0.004	0.62	0.0	0.04	14.52	0.00	2.047	7.62	0.27	3.3	96.7	0.0	-0.05	1.66	0.78	0.82	2.96	28116	3540	27	0	75	0	0	logfile
✔	6L3U	0826	2022-12-14	2019-10-15	2.53	2.59	2.48	2.6	0.010	0.96	0.0	0.05	16.88	0.01	2.206	0.45	3.01	1.9	98.1	0.0	-2.86	0.64	0.84	4.02	2.6	0.002	0.50	0.0	0.03	16.80	0.00	2.116	1.75	1.41	0.5	99.5	0.0	2.85	2.33	0.63	0.86	2.81	19698	1206	18	0	12	174	9588	logfile
✔	6UJB	20795	2022-12-12	2019-10-02	3.51	3.73	—	3.6	0.014	1.44	0.0	0.08	10.89	0.01	1.782	0.45	0.00	2.7	97.3	0.0	0.55	0.77	0.83	3.18	3.6	0.004	0.64	0.0	0.05	14.49	0.00	2.148	7.19	0.00	3.8	96.2	0.0	-0.32	0.73	0.79	0.85	3.14	9193	1180	11	0	23	0	0	logfile

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