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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7SoD | 25267 | 2023-04-20 | 2021-10-29 | 3.2 | 3.43 | 3.21 | 3.4 | 0.011 | 1.24 | 0.0 | 0.08 | 9.29 | 0.01 | 2.129 | 0.40 | 0.49 | 2.4 | 97.6 | 0.0 | 1.01 | 0.70 | 0.86 | 5.20 | 3.4 | 0.005 | 0.58 | 0.0 | 0.04 | 12.95 | 0.00 | 2.297 | 3.20 | 0.25 | 3.5 | 96.5 | 0.0 | 0.95 | 1.54 | 0.67 | 0.90 | 5.59 | 3830 | 473 | 5 | 0 | 7 | 0 | 0 | logfile |
✘ | 6oLL | 20116 | 2023-04-25 | 2019-04-16 | 4.1 | 4.59 | — | 4.4 | 0.004 | 1.05 | 0.0 | 0.06 | 6.94 | 0.01 | 2.400 | 0.40 | 0.00 | 2.0 | 97.8 | 0.2 | -0.51 | 0.67 | 0.58 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 10426 | 2114 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TPL | 26059 | 2023-04-25 | 2022-01-25 | 3.87 | 4.36 | — | 3.8 | 0.013 | 1.79 | 10.0 | 0.10 | 14.15 | 0.02 | 2.519 | 0.40 | 1.94 | 8.6 | 90.3 | 1.1 | -1.79 | 0.84 | 0.83 | 2.53 | 3.8 | 0.005 | 0.72 | 0.0 | 0.04 | 14.84 | 0.00 | 2.040 | 10.43 | 0.19 | 7.9 | 91.9 | 0.1 | -0.45 | 0.55 | 0.84 | 0.83 | 1.62 | 19992 | 2485 | 18 | 0 | 46 | 0 | 0 | logfile |
✔ | 7KNA | 22937 | 2023-04-22 | 2020-11-04 | 3.3 | 3.42 | 2.98 | 3.3 | 0.016 | 1.47 | 0.0 | 0.10 | 10.15 | 0.01 | 2.426 | 0.40 | 0.50 | 1.9 | 97.9 | 0.2 | 0.26 | 0.83 | 0.81 | 4.04 | 3.3 | 0.003 | 0.54 | 0.0 | 0.04 | 13.39 | 0.00 | 2.241 | 5.13 | 0.08 | 2.7 | 97.3 | 0.0 | 0.60 | 0.55 | 0.84 | 0.84 | 3.47 | 11593 | 1449 | 12 | 0 | 24 | 0 | 0 | logfile |
✔ | 6T90 | 10406 | 2023-04-22 | 2019-10-25 | 3.05 | 3.74 | — | 3.3 | 0.022 | 1.52 | 0.0 | 0.09 | 24.61 | 0.01 | 2.459 | 0.40 | 0.00 | 0.3 | 99.7 | 0.0 | 1.02 | 0.84 | 0.81 | 4.34 | 3.3 | 0.004 | 0.59 | 0.0 | 0.03 | 26.53 | 0.00 | 2.050 | 6.29 | 0.40 | 1.4 | 98.6 | 0.0 | 3.02 | 2.93 | 0.86 | 0.87 | 2.63 | 13031 | 903 | 19 | 282 | 9 | 0 | 0 | logfile |
✘ | 7LMS | 23441 | 2023-04-20 | 2021-02-05 | 3.5 | 4.13 | 3.61 | 4.0 | 0.019 | 1.52 | 0.0 | 0.09 | 10.07 | 0.01 | 2.432 | 0.41 | 0.00 | 0.2 | 99.8 | 0.0 | 0.57 | 0.81 | 0.83 | 3.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 4947 | 613 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7LCN | 23277 | 2023-04-24 | 2021-01-11 | 3.35 | 3.96 | — | 3.5 | 0.014 | 1.95 | 26.0 | 0.12 | 14.38 | 0.02 | 2.509 | 0.43 | 2.55 | 9.4 | 89.0 | 1.6 | -2.18 | 0.83 | 0.73 | 2.09 | 3.5 | 0.003 | 0.65 | 0.0 | 0.04 | 14.50 | 0.00 | 1.856 | 7.41 | 0.24 | 7.2 | 92.4 | 0.4 | -1.46 | 0.68 | 0.84 | 0.74 | 1.86 | 66313 | 4296 | 27 | 0 | 63 | 0 | 32245 | logfile |
✔ | 5UAK | 8516 | 2023-04-21 | 2016-12-19 | 3.87 | 4.12 | — | 4.2 | 0.008 | 1.08 | 0.0 | 0.06 | 13.28 | 0.00 | 2.474 | 0.43 | 0.00 | 4.3 | 95.7 | 0.0 | -3.02 | 0.42 | 0.62 | 1.39 | 4.1 | 0.003 | 0.75 | 0.0 | 0.04 | 16.32 | 0.00 | 2.186 | 12.57 | 0.60 | 3.4 | 96.6 | 0.0 | 0.68 | 1.57 | 0.53 | 0.76 | 1.17 | 9232 | 1139 | 2 | 0 | 19 | 0 | 0 | logfile |
✔ | 7K4N | 22668 | 2023-04-27 | 2020-09-15 | 3.3 | 3.50 | 3.37 | 3.4 | 0.013 | 1.41 | 0.0 | 0.09 | 9.54 | 0.01 | 2.431 | 0.43 | 0.00 | 2.7 | 97.3 | 0.0 | 0.95 | 0.80 | 0.80 | 4.31 | 3.4 | 0.004 | 0.61 | 0.0 | 0.05 | 13.06 | 0.00 | 2.214 | 5.51 | 0.31 | 2.3 | 97.7 | 0.0 | 0.99 | 0.57 | 0.83 | 0.85 | 3.78 | 25353 | 3654 | 27 | 0 | 63 | 0 | 0 | logfile |
✔ | 7S6i | 24876 | 2023-04-27 | 2021-09-14 | 3.2 | 3.55 | 3.30 | 3.5 | 0.022 | 1.73 | 0.0 | 0.12 | 10.14 | 0.01 | 2.394 | 0.44 | 0.10 | 3.2 | 96.8 | 0.0 | 0.33 | 0.81 | 0.85 | 4.14 | 3.5 | 0.003 | 0.64 | 0.0 | 0.04 | 13.58 | 0.00 | 2.185 | 4.42 | 0.17 | 3.3 | 96.7 | 0.1 | -0.06 | 1.34 | 0.82 | 0.88 | 3.62 | 26772 | 3309 | 24 | 0 | 66 | 0 | 0 | logfile |
✔ | 6UJC | 20796 | 2023-04-21 | 2019-10-02 | 3.56 | 3.89 | — | 3.9 | 0.014 | 1.40 | 0.0 | 0.09 | 10.61 | 0.01 | 1.792 | 0.44 | 0.11 | 3.0 | 97.0 | 0.0 | 0.47 | 0.72 | 0.75 | 2.35 | 3.9 | 0.004 | 0.68 | 0.0 | 0.04 | 13.44 | 0.00 | 1.978 | 8.12 | 0.21 | 4.9 | 95.1 | 0.0 | -0.22 | 0.75 | 0.75 | 0.79 | 2.12 | 9209 | 1184 | 11 | 0 | 23 | 0 | 0 | logfile |
✔ | 7WWB | 32865 | 2023-04-20 | 2022-02-12 | 3.86 | 4.08 | — | 4.1 | 0.008 | 0.97 | 0.0 | 0.07 | 9.51 | 0.01 | 2.511 | 0.45 | 0.00 | 2.5 | 97.5 | 0.0 | 0.18 | 0.48 | 0.76 | 2.65 | 4.1 | 0.004 | 0.75 | 0.0 | 0.04 | 15.89 | 0.01 | 2.208 | 9.75 | 1.01 | 4.8 | 94.9 | 0.3 | -0.24 | 1.66 | 0.51 | 0.80 | 2.12 | 5428 | 666 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 6DJP | 7939 | 2023-04-20 | 2018-05-25 | 4.8 | 5.02 | — | 4.8 | 0.012 | 2.01 | 0.0 | 0.08 | 4.72 | 0.01 | 2.368 | 0.45 | 0.00 | 4.6 | 95.4 | 0.0 | -0.74 | 0.76 | 0.65 | — | 4.8 | 0.007 | 1.19 | 0.0 | 0.05 | 8.16 | 0.01 | 2.172 | 17.74 | 0.00 | 22.8 | 77.2 | 0.1 | -4.06 | 1.20 | 0.82 | 0.76 | — | 7307 | 1393 | 16 | 0 | 23 | 0 | 0 | logfile |
✔ | 7KFH | 22853 | 2023-04-22 | 2020-10-13 | 3.8 | 3.87 | — | 3.8 | 0.021 | 1.76 | 0.0 | 0.11 | 10.27 | 0.01 | 2.360 | 0.45 | 0.21 | 1.8 | 97.8 | 0.4 | 1.11 | 0.69 | 0.85 | 3.27 | 3.8 | 0.003 | 0.68 | 0.0 | 0.04 | 14.04 | 0.00 | 2.174 | 7.80 | 0.71 | 3.4 | 96.4 | 0.2 | 0.16 | 1.37 | 0.70 | 0.85 | 2.37 | 13575 | 1695 | 21 | 0 | 30 | 0 | 0 | logfile |
✔ | 7RSN | 24675 | 2023-04-25 | 2021-08-11 | 3.49 | 3.85 | 3.57 | 3.9 | 0.023 | 1.84 | 3.0 | 0.14 | 10.53 | 0.01 | 2.296 | 0.46 | 0.00 | 4.0 | 95.6 | 0.4 | 0.48 | 0.73 | 0.82 | 2.83 | 3.9 | 0.004 | 0.73 | 0.0 | 0.04 | 15.16 | 0.00 | 2.107 | 9.36 | 0.30 | 6.2 | 93.5 | 0.3 | -0.48 | 1.61 | 0.69 | 0.83 | 2.12 | 19623 | 2310 | 33 | 0 | 99 | 0 | 0 | logfile |
✔ | 6X97 | 22103 | 2023-04-24 | 2020-06-02 | 3.65 | 4.17 | 3.77 | 4.1 | 0.022 | 1.77 | 0.0 | 0.14 | 10.62 | 0.01 | 2.496 | 0.46 | 0.30 | 2.1 | 97.9 | 0.0 | 0.36 | 0.77 | 0.80 | 2.77 | 4.1 | 0.003 | 0.73 | 0.0 | 0.04 | 15.26 | 0.00 | 2.192 | 11.11 | 0.40 | 5.0 | 94.9 | 0.1 | -0.35 | 0.87 | 0.77 | 0.81 | 2.50 | 18873 | 2319 | 30 | 0 | 60 | 0 | 0 | logfile |
✔ | 7RL0 | 24512 | 2023-04-27 | 2021-07-22 | 2.8 | 2.88 | — | 2.9 | 0.014 | 2.04 | 48.0 | 0.11 | 14.56 | 0.02 | 1.912 | 0.47 | 1.08 | 2.5 | 97.3 | 0.2 | -1.35 | 0.40 | 0.48 | 2.19 | 2.9 | 0.009 | 0.80 | 0.0 | 0.05 | 17.05 | 0.01 | 1.762 | 12.73 | 2.68 | 3.8 | 96.0 | 0.2 | 0.07 | 1.16 | 0.52 | 0.69 | 2.15 | 106080 | 6708 | 24 | 0 | 48 | 0 | 52716 | logfile |
✔ | 7JV4 | 22492 | 2023-04-27 | 2020-08-20 | 3.4 | 3.60 | 3.45 | 3.5 | 0.012 | 1.40 | 1.0 | 0.09 | 9.65 | 0.01 | 2.412 | 0.47 | 0.10 | 2.5 | 97.5 | 0.0 | 0.74 | 0.77 | 0.78 | 3.10 | 3.5 | 0.003 | 0.57 | 0.0 | 0.04 | 12.47 | 0.00 | 2.228 | 6.01 | 0.19 | 2.7 | 97.3 | 0.0 | 0.74 | 1.21 | 0.80 | 0.83 | 3.03 | 25162 | 3568 | 23 | 0 | 58 | 0 | 0 | logfile |
✘ | 7MN5 | 23916 | 2023-04-21 | 2021-04-30 | 2.93 | 3.53 | 3.04 | 3.3 | 0.013 | 1.46 | 0.0 | 0.08 | 10.99 | 0.01 | 2.311 | 0.48 | 0.00 | 3.3 | 96.7 | 0.0 | -0.05 | 0.82 | 0.81 | 3.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 9526 | 1213 | 8 | 0 | 13 | 0 | 0 | logfile |
✔ | 6WPT | 21865 | 2023-04-27 | 2020-04-27 | 3.7 | 3.95 | 3.74 | 3.8 | 0.012 | 1.35 | 0.0 | 0.09 | 9.79 | 0.01 | 1.930 | 0.48 | 0.09 | 1.9 | 98.0 | 0.1 | 0.62 | 0.76 | 0.76 | 2.77 | 3.8 | 0.004 | 0.65 | 0.0 | 0.04 | 13.42 | 0.00 | 2.171 | 7.13 | 0.27 | 3.0 | 96.9 | 0.1 | 0.30 | 1.27 | 0.79 | 0.80 | 2.54 | 24326 | 3277 | 22 | 0 | 65 | 0 | 0 | logfile |