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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8J5A | 35984 | 2024-03-19 | 2023-04-21 | 1.19 | 1.12 | 1.22 | 1.2 | 0.014 | 1.48 | 0.0 | 0.08 | 13.93 | 0.01 | 1.560 | 8.49 | 3.21 | 0.6 | 99.4 | 0.0 | 3.37 | 0.51 | 0.66 | 8.67 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 56208 | 4128 | 24 | 0 | 24 | 3384 | 17040 | logfile |
✔ | 7A6A | 11668 | 2024-03-18 | 2020-08-25 | 1.15 | 1.13 | — | 1.2 | 0.018 | 1.70 | 24.0 | 0.16 | 14.68 | 0.01 | 1.857 | 3.78 | 3.03 | 1.2 | 98.8 | 0.0 | 2.45 | 0.47 | 0.61 | 9.02 | 1.2 | 0.003 | 0.58 | 0.0 | 0.04 | 14.97 | 0.00 | 2.193 | 3.34 | 1.82 | 1.8 | 98.2 | 0.0 | 4.63 | 0.40 | 0.69 | 0.82 | 8.90 | 41613 | 4152 | 72 | 0 | 32 | 4621 | 0 | logfile |
✔ | 7A6B | 11669 | 2024-03-18 | 2020-08-25 | 1.33 | 1.21 | — | 1.3 | 0.015 | 1.60 | 24.0 | 0.12 | 16.78 | 0.01 | 1.893 | 4.97 | 4.17 | 1.2 | 98.8 | 0.0 | 2.52 | 0.52 | 0.65 | 9.13 | 1.3 | 0.002 | 0.60 | 0.0 | 0.04 | 14.49 | 0.00 | 2.224 | 2.85 | 1.79 | 1.8 | 98.2 | 0.0 | 4.85 | 0.38 | 0.75 | 0.86 | 9.05 | 41494 | 4152 | 72 | 0 | 32 | 3854 | 0 | logfile |
✔ | 7RRP | 24665 | 2024-03-16 | 2021-08-10 | 1.27 | 1.32 | — | 1.4 | 0.003 | 0.61 | 0.0 | 0.04 | 14.22 | 0.00 | 2.007 | 2.86 | 0.00 | 2.4 | 97.6 | 0.0 | 4.01 | 0.63 | 0.76 | 9.05 | 1.4 | 0.004 | 0.66 | 0.0 | 0.04 | 14.32 | 0.00 | 2.044 | 2.00 | 0.61 | 1.8 | 98.2 | 0.0 | 3.97 | 0.06 | 0.70 | 0.83 | 9.05 | 72254 | 4128 | 72 | 0 | 278 | 2496 | 34080 | logfile |
✔ | 7VD8 | 31910 | 2024-03-23 | 2021-09-06 | 1.96 | 1.42 | 2.01 | 1.7 | 0.002 | 0.54 | 0.0 | 0.04 | 16.17 | 0.00 | 2.013 | 2.67 | 0.03 | 2.2 | 97.8 | 0.0 | 5.39 | 0.75 | 0.80 | 7.92 | 1.7 | 0.003 | 0.57 | 0.0 | 0.04 | 16.51 | 0.00 | 1.985 | 2.08 | 0.56 | 1.2 | 98.8 | 0.0 | 5.31 | 0.23 | 0.74 | 0.80 | 8.07 | 38201 | 4128 | 72 | 0 | 329 | 2472 | 0 | logfile |
✔ | 7K3V | 22657 | 2024-03-23 | 2020-09-14 | 1.34 | 1.44 | — | 1.4 | 0.005 | 0.79 | 0.0 | 0.04 | 21.25 | 0.00 | 0.211 | 2.71 | 0.00 | 1.2 | 98.8 | 0.0 | 3.60 | 0.69 | 0.78 | 8.90 | 1.4 | 0.004 | 0.68 | 0.0 | 0.04 | 14.91 | 0.00 | 1.994 | 2.07 | 0.00 | 1.2 | 98.8 | 0.0 | 4.00 | 0.37 | 0.73 | 0.83 | 8.88 | 38406 | 4128 | 72 | 0 | 334 | 2672 | 0 | logfile |
✔ | 7K3W | 22658 | 2024-03-23 | 2020-09-14 | 1.36 | 1.48 | — | 1.5 | 0.005 | 0.76 | 0.0 | 0.04 | 20.58 | 0.00 | 1.934 | 3.30 | 0.00 | 1.8 | 98.2 | 0.0 | 3.35 | 0.73 | 0.80 | 9.05 | 1.5 | 0.004 | 0.67 | 0.0 | 0.04 | 14.88 | 0.00 | 2.032 | 2.26 | 0.00 | 1.8 | 98.2 | 0.0 | 4.02 | 0.24 | 0.75 | 0.82 | 9.16 | 39086 | 4128 | 72 | 0 | 382 | 2680 | 0 | logfile |
✔ | 8EN7 | 28269 | 2024-03-16 | 2022-09-28 | 1.68 | 1.48 | 1.71 | 1.6 | 0.012 | 1.29 | 0.0 | 0.07 | 15.67 | 0.01 | 0.731 | 8.76 | 1.27 | 1.2 | 98.8 | 0.0 | 2.40 | 0.61 | 0.75 | 8.54 | 1.6 | 0.002 | 0.54 | 0.0 | 0.04 | 15.27 | 0.00 | 2.235 | 4.30 | 0.63 | 1.2 | 98.8 | 0.0 | 5.30 | 0.41 | 0.75 | 0.85 | 7.89 | 37614 | 4128 | 54 | 0 | 6 | 2544 | 0 | logfile |
✔ | 8CPU | 16786 | 2024-03-23 | 2023-03-03 | 1.76 | 1.54 | 1.80 | 1.6 | 0.004 | 0.71 | 0.0 | 0.05 | 14.91 | 0.01 | 1.976 | 4.95 | 0.00 | 1.0 | 99.0 | 0.0 | 2.29 | 0.71 | 0.77 | 8.55 | 1.6 | 0.003 | 0.53 | 0.0 | 0.04 | 15.47 | 0.00 | 2.115 | 4.47 | 0.30 | 1.8 | 98.2 | 0.0 | 4.56 | 0.31 | 0.73 | 0.80 | 8.29 | 35823 | 4152 | 72 | 0 | 38 | 1705 | 0 | logfile |
✔ | 8CPM | 16783 | 2024-03-23 | 2023-03-03 | 1.81 | 1.57 | 1.84 | 1.6 | 0.005 | 0.85 | 0.0 | 0.05 | 15.21 | 0.01 | 1.916 | 7.77 | 0.00 | 1.0 | 99.0 | 0.0 | 2.32 | 0.70 | 0.75 | 7.56 | 1.6 | 0.003 | 0.58 | 0.0 | 0.04 | 16.44 | 0.00 | 2.052 | 6.36 | 0.63 | 2.2 | 97.8 | 0.0 | 4.49 | 0.34 | 0.71 | 0.77 | 7.63 | 36090 | 4152 | 72 | 0 | 38 | 1972 | 0 | logfile |
✔ | 8EMQ | 28259 | 2024-03-16 | 2022-09-28 | 1.66 | 1.59 | 1.68 | 1.6 | 0.011 | 1.31 | 0.0 | 0.07 | 15.25 | 0.01 | 0.733 | 5.98 | 1.91 | 0.6 | 99.4 | 0.0 | 2.37 | 0.66 | 0.78 | 9.05 | 1.6 | 0.003 | 0.59 | 0.0 | 0.04 | 14.39 | 0.00 | 2.083 | 3.47 | 0.64 | 1.2 | 98.8 | 0.0 | 5.32 | 0.38 | 0.81 | 0.89 | 8.89 | 37805 | 4128 | 72 | 0 | 30 | 2975 | 0 | logfile |
✔ | 8CGU | 16651 | 2024-03-23 | 2023-02-06 | 1.89 | 1.60 | 1.82 | 1.8 | 0.009 | 1.58 | 1.0 | 0.11 | 22.07 | 0.02 | 1.895 | 0.38 | 0.38 | 2.4 | 97.6 | 0.0 | -0.61 | 0.60 | 0.81 | 6.95 | 1.8 | 0.005 | 0.83 | 0.0 | 0.04 | 22.34 | 0.01 | 1.797 | 4.17 | 0.87 | 2.0 | 98.0 | 0.0 | 0.76 | 2.28 | 0.70 | 0.88 | 6.49 | 35196 | 1266 | 31 | 1078 | 87 | 1871 | 0 | logfile |
✔ | 8CA7 | 16520 | 2024-03-17 | 2023-01-24 | 2.06 | 1.61 | 1.93 | 1.9 | 0.012 | 1.53 | 0.0 | 0.14 | 21.90 | 0.03 | 1.726 | 0.60 | 0.71 | 3.0 | 96.8 | 0.1 | -1.46 | 0.62 | 0.75 | 4.98 | 1.9 | 0.004 | 0.84 | 0.0 | 0.05 | 22.51 | 0.01 | 1.729 | 8.76 | 1.28 | 2.3 | 97.6 | 0.1 | 1.16 | 0.41 | 0.69 | 0.78 | 5.06 | 18093 | 848 | 19 | 502 | 42 | 543 | 0 | logfile |
✔ | 8CPX | 16789 | 2024-03-23 | 2023-03-03 | 1.76 | 1.61 | 1.78 | 1.6 | 0.005 | 0.80 | 0.0 | 0.06 | 14.97 | 0.01 | 2.063 | 5.37 | 0.00 | 1.0 | 99.0 | 0.0 | 2.18 | 0.75 | 0.81 | 8.02 | 1.6 | 0.003 | 0.65 | 0.0 | 0.04 | 15.93 | 0.00 | 2.149 | 4.02 | 1.31 | 1.2 | 98.8 | 0.0 | 3.96 | 0.38 | 0.79 | 0.85 | 7.66 | 35827 | 4152 | 72 | 0 | 38 | 1709 | 0 | logfile |
✔ | 6Z9F | 11122 | 2024-03-17 | 2020-06-03 | 1.56 | 1.61 | 1.61 | 1.6 | 0.015 | 1.74 | 48.0 | 0.10 | 15.51 | 0.01 | 1.782 | 5.46 | 3.66 | 1.7 | 98.3 | 0.0 | 2.70 | 0.68 | 0.69 | 8.63 | 1.6 | 0.003 | 0.61 | 0.0 | 0.04 | 15.04 | 0.00 | 2.187 | 3.77 | 2.46 | 1.8 | 98.2 | 0.0 | 4.81 | 0.92 | 0.84 | 0.86 | 8.53 | 41020 | 4152 | 72 | 0 | 32 | 4172 | 0 | logfile |
✔ | 8CPW | 16788 | 2024-03-23 | 2023-03-03 | 1.79 | 1.64 | 1.78 | 1.7 | 0.005 | 0.84 | 0.0 | 0.06 | 14.35 | 0.01 | 2.180 | 3.39 | 0.63 | 1.0 | 99.0 | 0.0 | 2.13 | 0.77 | 0.83 | 8.34 | 1.6 | 0.003 | 0.66 | 0.0 | 0.04 | 14.70 | 0.00 | 2.220 | 4.01 | 0.65 | 1.2 | 98.8 | 0.0 | 4.15 | 0.23 | 0.77 | 0.85 | 7.80 | 36004 | 4152 | 72 | 0 | 38 | 1886 | 0 | logfile |
✔ | 7QQ3 | 14121 | 2024-03-18 | 2022-01-06 | 2.1 | 1.65 | 2.18 | 1.9 | 0.008 | 0.75 | 5.0 | 0.05 | 23.40 | 0.02 | 1.832 | 2.70 | 4.22 | 3.6 | 96.0 | 0.4 | -0.31 | 0.50 | 0.61 | 3.73 | 1.7 | 0.006 | 1.04 | 4.0 | 0.05 | 23.18 | 0.01 | 1.702 | 7.18 | 2.60 | 4.2 | 95.6 | 0.2 | -0.69 | 1.89 | 0.64 | 0.70 | 4.04 | 87594 | 2903 | 35 | 3016 | 154 | 28 | 0 | logfile |
✔ | 7YK5 | 33887 | 2024-03-24 | 2022-07-21 | 2.0 | 1.66 | — | 1.9 | 0.014 | 1.49 | 0.0 | 0.09 | 17.33 | 0.00 | 2.157 | 4.91 | 7.75 | 4.0 | 96.0 | 0.0 | -2.45 | 0.38 | 0.48 | 6.60 | 1.9 | 0.005 | 0.77 | 0.0 | 0.05 | 16.41 | 0.01 | 2.346 | 1.79 | 1.20 | 2.7 | 97.3 | 0.0 | -0.03 | 1.29 | 0.81 | 0.84 | 6.70 | 39948 | 5064 | 36 | 0 | 8 | 0 | 0 | logfile |
✔ | 7QK5 | 14038 | 2024-03-15 | 2021-12-17 | 1.92 | 1.67 | 1.83 | 2.2 | 0.011 | 1.89 | 4.0 | 0.10 | 10.96 | 0.01 | 2.401 | 0.10 | 0.00 | 4.5 | 95.5 | 0.0 | -1.58 | 0.32 | 0.78 | 6.85 | 2.2 | 0.004 | 0.64 | 0.0 | 0.05 | 18.07 | 0.01 | 2.251 | 3.63 | 2.22 | 3.7 | 96.3 | 0.0 | -1.68 | 1.63 | 0.36 | 0.83 | 7.23 | 10485 | 666 | 18 | 0 | 36 | 0 | 5337 | logfile |
✘ | 7BiN | 12192 | 2024-03-18 | 2021-01-12 | 3.2 | 1.68 | 3.08 | 3.1 | 0.010 | 0.90 | 0.0 | 0.05 | 15.16 | 0.01 | 1.043 | 16.06 | 0.04 | 9.8 | 90.1 | 0.1 | -0.58 | 0.53 | 0.67 | 1.12 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 81721 | 10887 | 56 | 0 | 0 | 0 | 0 | logfile |