Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CTE	26988	2023-08-24	2022-05-14	2.9	1.86	2.80	1.5	0.003	0.53	1.0	0.04	11.34	0.00	2.214	5.55	2.34	1.6	98.3	0.1	2.02	0.78	0.75	3.53	1.4	0.003	0.54	0.0	0.04	15.01	0.00	2.104	7.16	1.53	1.8	98.1	0.1	1.87	0.57	0.82	0.81	3.91	38844	4984	21	0	16	0	0	logfile
✔	8A57	15161	2023-08-22	2022-06-14	2.3	1.87	2.34	2.1	0.011	1.72	2.0	0.12	15.42	0.02	1.972	3.26	2.49	7.1	91.7	1.2	-3.32	0.61	0.75	3.99	2.0	0.006	0.90	0.0	0.05	16.23	0.01	1.789	10.15	3.40	5.3	94.5	0.2	-1.27	1.28	0.68	0.77	3.97	92760	3527	39	3022	167	0	0	logfile
✔	6ZGL	11210	2023-08-14	2020-06-19	1.9	1.87	—	1.9	0.013	1.55	0.0	0.12	15.52	0.01	2.196	9.00	3.73	1.1	98.9	0.0	0.13	0.73	0.83	7.03	1.9	0.003	0.52	0.0	0.04	15.83	0.00	2.114	4.28	0.93	0.9	99.1	0.0	3.77	0.76	0.75	0.83	7.09	15760	1848	24	0	0	964	0	logfile
✔	7M4Z	23671	2023-08-22	2021-03-22	2.92	1.87	—	1.6	0.005	0.54	0.0	0.03	15.14	0.02	1.833	4.61	0.00	3.0	96.9	0.2	1.09	0.77	0.72	2.81	2.5	0.004	0.69	0.0	0.04	16.16	0.01	1.686	6.98	1.94	3.4	96.4	0.2	0.27	0.92	0.80	0.76	2.74	138172	5625	70	4373	190	229	0	logfile
✔	7P6A	13223	2023-08-09	2021-07-15	1.9	1.91	1.88	1.9	0.004	0.72	0.0	0.06	12.30	0.01	2.247	3.33	0.00	3.8	96.2	0.0	-3.07	0.51	0.86	7.13	1.9	0.003	0.65	0.0	0.05	14.15	0.00	2.293	4.99	0.00	4.7	95.3	0.0	-2.61	0.38	0.55	0.89	7.74	4166	540	10	0	0	76	0	logfile
✔	8ooF	17012	2023-08-09	2023-04-05	2.9	1.91	3.05	2.8	0.004	0.71	0.0	0.05	12.99	0.01	2.043	2.60	0.00	2.9	97.1	0.0	-0.80	0.84	0.83	4.92	2.6	0.004	0.65	0.0	0.04	16.07	0.00	1.985	7.45	1.50	3.5	96.5	0.0	0.50	1.96	0.85	0.84	4.50	4479	556	2	0	2	0	0	logfile
✔	8A5i	15175	2023-08-21	2022-06-15	2.3	1.92	2.20	2.2	0.011	1.72	1.0	0.12	15.57	0.02	1.234	3.32	2.48	5.4	93.2	1.4	-2.45	0.49	0.73	5.52	2.1	0.005	0.83	0.0	0.04	15.73	0.01	1.569	7.88	2.08	4.3	95.5	0.2	-0.37	0.88	0.68	0.85	5.34	89799	2973	56	3022	172	1381	0	logfile
✔	8AKN	15488	2023-08-29	2022-07-30	2.3	1.94	2.20	2.2	0.013	1.78	0.0	0.17	14.48	0.02	1.528	3.25	2.19	5.9	93.2	0.9	-3.31	0.61	0.80	5.18	2.1	0.005	0.79	0.0	0.04	15.02	0.01	1.767	7.21	2.33	2.6	97.3	0.1	-0.01	1.22	0.72	0.85	4.95	146513	5960	103	4552	309	1754	0	logfile
✔	7R4X	14317	2023-08-19	2022-02-09	2.15	1.94	—	2.1	0.012	1.13	0.0	0.06	16.98	0.04	1.443	4.90	4.12	3.8	96.2	0.1	-0.66	0.70	0.73	4.07	2.0	0.005	1.06	0.0	0.04	17.40	0.01	1.810	12.10	2.57	3.6	96.4	0.0	0.26	0.92	0.77	0.85	4.42	77937	4792	77	1646	174	4117	0	logfile
✔	8CS9	26960	2023-08-11	2022-05-12	2.74	1.95	—	1.6	0.006	0.85	0.0	0.05	18.10	0.01	2.218	10.20	3.66	2.2	97.5	0.3	0.33	0.82	0.81	3.50	1.6	0.003	0.66	0.0	0.04	17.83	0.00	2.112	8.08	2.56	1.7	98.3	0.0	1.72	0.39	0.83	0.83	3.42	60944	7677	39	0	27	268	0	logfile
✔	7MiJ	23853	2023-08-17	2021-04-17	1.98	1.95	—	2.0	0.010	1.38	4.0	0.05	19.92	0.01	2.320	3.08	0.18	2.8	97.2	0.0	-3.96	0.75	0.81	5.48	2.0	0.002	0.51	0.0	0.04	18.05	0.00	2.213	4.43	0.92	2.6	97.4	0.0	1.38	1.08	0.75	0.80	4.57	23010	2556	12	0	38	328	0	logfile
✔	8G6X	29787	2023-08-23	2023-02-16	2.31	1.96	2.20	2.0	0.011	0.99	0.0	0.06	15.24	0.03	1.474	7.58	5.85	4.1	95.8	0.2	-2.02	0.68	0.83	5.32	2.1	0.005	0.81	0.0	0.04	15.23	0.01	1.777	6.96	3.37	3.9	96.0	0.1	-0.33	0.28	0.69	0.85	5.14	93873	3177	72	3037	252	3462	0	logfile
✘	8BQV	16188	2023-08-10	2023-01-18	2.0	1.96	1.89	1.9	0.008	1.01	0.0	0.07	8.75	0.00	0.000	15.01	0.00	6.8	93.2	0.0	-2.59	0.54	0.77	8.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8595	1155	45	0	105	120	0	logfile
✔	8oo7	17006	2023-08-25	2023-04-04	2.8	1.96	—	2.8	0.004	0.95	0.0	0.05	18.16	0.01	1.779	3.33	0.00	2.3	97.7	0.0	-1.13	0.82	0.81	3.75	2.8	0.004	0.69	0.0	0.04	20.54	0.00	1.413	8.72	1.59	2.2	97.8	0.0	0.63	1.38	0.84	0.83	2.97	41024	4693	26	226	11	0	0	logfile
✘	7P13	13154	2023-08-13	2021-07-01	2.29	1.96	2.28	1.7	0.016	1.06	0.0	0.07	14.07	0.01	2.430	5.24	0.00	3.3	96.7	0.0	2.06	0.82	0.87	4.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13727	1743	7	0	0	0	154	logfile
✔	7SiL	25143	2023-08-12	2021-10-14	2.7	1.97	—	1.5	0.004	0.70	0.0	0.05	13.66	0.00	2.160	6.65	0.15	2.1	97.9	0.0	0.60	0.75	0.72	3.10	1.6	0.003	0.58	0.0	0.04	16.10	0.00	2.167	8.36	1.77	2.8	97.2	0.0	0.57	0.39	0.77	0.78	2.87	12924	1564	8	0	34	0	0	logfile
✔	7TU5	26126	2023-08-24	2022-02-02	2.1	1.97	2.06	1.8	0.009	0.85	6.0	0.06	15.88	0.01	1.910	4.33	1.54	1.4	98.6	0.0	0.64	0.84	0.82	4.27	1.7	0.006	0.58	0.0	0.04	16.46	0.00	1.927	5.68	2.06	1.7	98.3	0.0	1.28	0.78	0.87	0.87	5.20	19656	2574	18	0	6	6	0	logfile
✔	7PBW	13307	2023-08-11	2021-08-02	2.1	1.98	—	2.1	0.009	0.99	0.0	0.05	12.27	0.01	2.243	2.93	0.00	0.0	100.0	0.0	3.14	0.78	0.90	7.90	2.1	0.004	0.76	0.0	0.04	14.47	0.01	2.150	7.99	0.00	0.0	100.0	0.0	4.46	0.28	0.77	0.90	7.32	9500	873	54	0	81	230	0	logfile
✔	7P6B	13224	2023-08-09	2021-07-15	2.2	1.98	2.14	2.1	0.004	0.75	0.0	0.09	13.80	0.01	2.246	4.21	0.00	3.8	96.2	0.0	-2.60	0.48	0.85	6.24	2.0	0.005	0.67	0.0	0.05	17.01	0.00	2.132	7.10	0.43	4.7	95.3	0.0	-2.28	2.23	0.49	0.88	6.77	4060	540	5	0	0	0	0	logfile
✘	6X1A	21994	2023-08-12	2020-05-18	2.5	1.99	2.50	2.6	0.006	0.93	0.0	0.07	15.41	0.00	2.140	14.37	3.79	3.9	96.1	0.0	-3.15	0.51	0.71	2.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10140	1262	5	0	1	23	0	logfile

• ← previous
• Page 3 of 542
• next →