Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6UVA	20906	2022-12-12	2019-11-01	2.3	2.12	2.31	2.2	0.002	0.55	0.0	0.04	18.04	0.00	2.207	6.97	3.36	3.2	96.8	0.0	-2.29	0.63	0.72	2.83	2.3	0.003	0.59	0.0	0.04	18.45	0.00	2.147	8.77	3.45	4.2	95.8	0.0	0.29	1.31	0.65	0.78	2.85	9561	1199	7	0	0	0	0	logfile
✔	7JFo	22308	2022-12-20	2020-07-17	2.13	2.12	—	2.1	0.022	1.67	2.0	0.11	12.07	0.01	2.198	6.82	1.23	3.9	96.1	0.0	-0.96	0.72	0.78	6.96	2.1	0.003	0.59	0.0	0.04	14.54	0.00	2.211	7.06	1.03	2.2	97.8	0.0	1.32	0.79	0.70	0.81	5.75	38958	4832	40	0	0	1198	0	logfile
✔	7UM6	26598	2022-12-11	2022-04-06	2.79	2.13	2.81	1.9	0.021	0.64	0.0	0.04	11.12	0.00	2.359	2.51	0.12	3.8	96.2	0.0	-0.54	0.82	0.81	4.30	1.9	0.003	0.64	0.0	0.04	13.68	0.00	2.268	4.26	1.45	3.3	96.7	0.0	0.24	0.29	0.83	0.83	4.05	8175	1094	6	0	1	0	0	logfile
✔	7V9L	31824	2022-12-11	2021-08-26	2.6	2.13	—	1.8	0.004	0.69	0.0	0.05	13.08	0.01	2.120	4.19	0.00	3.8	96.2	0.0	0.00	0.67	0.70	3.73	1.9	0.003	0.59	0.0	0.04	15.79	0.00	2.135	10.88	1.38	2.2	97.8	0.0	0.96	0.50	0.77	0.79	2.85	8047	1019	5	0	0	0	0	logfile
✔	7UM7	26599	2022-12-11	2022-04-06	2.75	2.13	2.74	1.9	0.002	0.48	0.0	0.04	12.58	0.01	2.220	2.88	0.00	2.8	97.2	0.0	-0.25	0.81	0.80	4.23	1.9	0.003	0.56	0.0	0.04	14.97	0.00	2.239	3.70	1.20	4.0	96.0	0.0	0.72	0.32	0.83	0.82	3.83	8165	1089	6	0	1	0	0	logfile
✔	7NK7	12432	2022-12-21	2021-02-17	2.11	2.13	—	2.1	0.006	0.63	0.0	0.05	16.46	0.00	2.121	3.65	0.88	1.8	98.1	0.1	1.07	0.80	0.89	5.91	2.1	0.003	0.55	0.0	0.04	16.33	0.00	1.838	3.54	0.84	1.8	98.1	0.1	1.33	0.22	0.81	0.90	5.74	45644	2954	20	0	11	459	22525	logfile
✔	7S8M	24897	2022-12-12	2021-09-18	2.54	2.13	2.54	2.0	0.004	0.59	0.0	0.04	12.64	0.00	2.171	6.94	0.00	4.1	95.9	0.0	0.46	0.79	0.80	4.13	2.0	0.003	0.56	0.0	0.04	15.00	0.00	2.213	6.94	1.95	4.2	95.8	0.0	1.25	0.33	0.81	0.83	3.88	8346	1102	6	0	0	0	0	logfile
✔	8DWC	27752	2022-12-12	2022-08-01	2.87	2.13	2.85	2.0	0.008	0.65	0.0	0.05	12.54	0.00	2.095	7.34	0.00	4.8	95.2	0.0	-1.14	0.76	0.81	4.35	2.0	0.002	0.54	0.0	0.04	15.11	0.00	2.169	5.68	1.18	3.4	96.6	0.0	1.33	0.35	0.77	0.83	3.19	8298	1102	6	0	0	0	0	logfile
✔	7TFC	25869	2022-12-22	2022-01-06	1.96	2.13	—	2.1	0.002	0.53	0.0	0.04	17.59	0.00	1.913	6.27	1.74	4.1	95.9	0.0	0.82	0.43	0.60	5.65	2.1	0.002	0.51	0.0	0.04	17.24	0.00	1.871	18.01	0.75	4.5	95.5	0.0	1.07	1.37	0.74	0.84	6.12	50456	6356	42	0	28	0	140	logfile
✔	7SQG	25384	2022-12-11	2021-11-05	2.6	2.14	—	1.9	0.004	0.56	0.0	0.05	14.80	0.00	2.423	3.58	0.00	3.0	97.0	0.0	1.39	0.75	0.77	3.39	1.8	0.005	0.64	0.0	0.05	18.67	0.00	2.092	8.16	1.16	4.0	96.0	0.0	1.64	0.97	0.81	0.83	3.46	6630	810	6	0	12	0	0	logfile
✔	7PQT	13604	2022-12-12	2021-09-20	2.65	2.14	—	2.9	0.011	0.87	0.0	0.05	18.50	0.01	2.130	13.90	10.42	6.9	92.4	0.7	-3.82	0.76	0.71	4.07	2.9	0.004	0.77	0.0	0.04	18.50	0.00	2.100	12.32	5.43	5.1	94.6	0.3	-0.17	0.37	0.82	0.85	3.77	10464	1272	10	0	4	8	0	logfile
✔	7WiG	32529	2022-12-12	2022-01-03	2.7	2.14	—	1.8	0.006	0.75	0.0	0.05	13.13	0.01	2.192	6.98	0.00	2.0	98.0	0.0	1.11	0.78	0.77	3.19	1.8	0.003	0.92	0.0	0.04	15.47	0.00	2.168	5.96	1.23	2.1	97.9	0.0	1.38	0.33	0.79	0.80	3.05	8931	1139	6	0	1	0	0	logfile
✔	7LEZ	23295	2022-12-15	2021-01-15	4.15	2.14	4.23	3.9	0.007	1.20	0.0	0.06	10.28	0.01	1.255	12.12	0.91	10.1	89.2	0.7	-4.35	0.77	0.65	—	3.9	0.005	0.88	0.0	0.05	11.87	0.01	1.284	23.62	0.00	11.7	88.2	0.2	-1.92	1.81	0.78	0.67	—	27794	3654	20	0	12	0	0	logfile
✔	7UWM	26836	2022-12-11	2022-05-03	2.5	2.14	2.51	1.9	0.003	0.57	0.0	0.04	18.13	0.00	2.107	6.93	2.96	3.0	97.0	0.0	-0.69	0.80	0.79	2.42	1.9	0.002	0.53	0.0	0.04	18.42	0.00	2.115	7.00	4.39	2.6	97.4	0.0	-0.32	0.23	0.80	0.79	2.06	7972	967	9	0	9	0	0	logfile
✘	7EDA	31062	2022-12-18	2021-03-15	2.78	2.14	2.78	2.1	0.019	1.96	0.0	0.07	17.44	0.02	1.308	9.52	0.47	3.4	96.6	0.0	-4.11	0.67	0.76	4.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	22843	2567	32	0	67	16	0	logfile
✘	7oSE	13048	2022-12-18	2021-06-08	3.0	2.15	—	3.3	0.003	0.51	0.0	0.04	13.24	0.01	1.207	8.86	0.66	1.8	98.2	0.0	2.38	0.60	0.78	2.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14882	1816	12	0	10	2	0	logfile
✔	7M3N	23658	2022-12-11	2021-03-18	2.4	2.15	2.40	1.9	0.005	0.63	0.0	0.04	15.95	0.00	2.168	5.79	4.28	4.3	95.6	0.1	-2.53	0.43	0.82	4.98	2.0	0.003	0.58	0.0	0.04	16.91	0.00	2.261	6.89	2.29	3.6	96.4	0.0	-0.41	0.46	0.45	0.84	4.72	6004	759	3	0	0	0	0	logfile
✔	7JJP	22358	2022-12-21	2020-07-27	1.94	2.15	2.08	2.1	0.011	0.87	0.0	0.07	13.34	0.01	2.228	2.51	0.56	1.6	98.4	0.0	0.39	0.71	0.85	5.30	2.1	0.003	0.54	0.0	0.04	14.41	0.00	2.090	6.65	0.65	1.7	98.3	0.0	3.45	0.92	0.71	0.87	4.95	40920	2352	36	0	180	396	19104	logfile
✔	6ZKL	11253	2022-12-13	2020-06-30	3.1	2.15	—	2.2	0.006	1.01	0.0	1.03	11.78	0.01	2.242	6.57	0.07	3.9	96.1	0.0	-2.99	0.56	0.74	3.16	2.1	0.008	1.59	0.0	0.31	16.14	0.00	2.070	15.34	0.21	3.9	96.1	0.0	0.21	0.72	0.56	0.75	2.72	67492	8162	71	0	47	0	0	logfile
✘	6ZZY	11589	2022-12-19	2020-08-05	3.16	2.16	—	2.5	0.025	2.68	0.0	0.19	21.02	0.02	1.196	12.90	0.03	6.1	93.7	0.2	-0.33	0.57	0.76	3.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	54609	4594	44	0	379	0	0	logfile

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