Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7W4A	32299	2023-07-06	2021-11-26	2.76	2.16	2.69	2.2	0.006	0.71	0.0	0.04	13.12	0.00	2.048	7.08	0.09	2.3	97.7	0.0	1.29	0.63	0.77	3.24	2.2	0.002	0.54	0.0	0.04	15.88	0.00	2.033	6.62	1.80	2.4	97.6	0.0	1.44	0.43	0.63	0.79	2.98	9855	1245	5	0	7	12	0	logfile
✔	7N5G	24189	2023-07-03	2021-06-05	2.4	2.16	2.42	1.5	0.022	1.51	0.0	0.09	10.57	0.01	2.386	0.17	0.00	0.8	99.2	0.0	1.84	0.40	0.79	3.64	1.5	0.003	0.57	0.0	0.04	16.52	0.00	2.220	4.78	2.61	1.4	98.6	0.0	2.92	1.20	0.39	0.80	2.57	2926	371	1	0	1	0	0	logfile
✔	7N5E	24187	2023-07-08	2021-06-05	2.8	2.16	2.68	1.5	0.023	1.54	0.0	0.09	10.26	0.01	2.378	0.36	0.00	1.2	98.8	0.0	1.87	0.80	0.80	4.07	1.9	0.003	0.58	0.0	0.04	16.11	0.00	2.127	6.31	1.10	1.8	98.2	0.0	2.74	0.58	0.78	0.79	3.16	17915	2176	14	0	7	0	0	logfile
✔	7TYF	26178	2023-07-05	2022-02-13	2.2	2.16	2.14	2.2	0.004	0.57	0.0	0.04	14.45	0.00	2.234	4.87	0.87	1.8	98.2	0.0	-1.73	0.64	0.82	5.12	2.2	0.003	0.64	0.0	0.04	16.18	0.00	2.202	6.55	1.26	2.3	97.7	0.0	0.96	0.50	0.66	0.86	4.67	10331	1266	12	0	16	83	0	logfile
✔	8F8Q	28933	2023-07-10	2022-11-22	2.79	2.16	2.84	1.8	0.004	0.69	0.0	0.05	14.38	0.01	2.072	3.55	3.93	3.1	96.9	0.0	-0.96	0.80	0.83	3.55	1.8	0.008	0.75	0.0	0.05	17.09	0.01	1.807	8.18	3.00	4.4	95.6	0.0	0.11	0.38	0.80	0.84	3.34	22006	2778	14	0	12	0	0	logfile
✔	8DPH	27635	2023-07-04	2022-07-15	3.2	2.17	3.15	2.0	0.005	0.59	0.0	0.05	9.34	0.00	2.162	2.82	0.73	1.4	98.6	0.0	1.66	0.76	0.73	2.48	2.1	0.003	0.62	0.0	0.04	14.05	0.00	2.202	5.07	0.24	2.8	97.2	0.0	1.06	1.06	0.78	0.77	2.24	8182	1093	6	0	3	0	0	logfile
✔	8DBH	27284	2023-07-13	2022-06-14	2.2	2.17	2.27	2.1	0.007	0.69	0.0	0.05	15.18	0.00	1.957	4.90	1.94	3.4	96.6	0.0	0.54	0.72	0.85	5.77	2.1	0.002	0.49	0.0	0.05	15.66	0.00	1.961	5.07	1.78	3.7	96.3	0.0	1.16	0.91	0.74	0.90	5.57	28884	3708	36	0	60	24	0	logfile
✘	7XSQ	33431	2023-07-08	2022-05-15	2.88	2.17	2.83	2.1	0.009	0.93	3.0	0.06	17.11	0.01	2.157	2.60	2.74	6.1	93.8	0.1	-2.88	0.77	0.75	2.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16573	1967	4	34	4	0	0	logfile
✔	7N0L	24108	2023-07-03	2021-05-25	2.8	2.17	—	3.1	0.065	1.95	0.0	0.04	21.58	0.00	1.675	18.13	9.23	2.0	98.0	0.0	-6.10	0.56	0.80	3.16	3.1	0.002	0.66	0.0	0.04	19.76	0.00	2.190	15.04	5.90	0.3	99.7	0.0	1.88	1.26	0.56	0.81	2.04	5270	626	4	0	2	0	0	logfile
✘	7SiD	25141	2023-07-19	2021-10-13	2.53	2.17	—	2.7	0.003	0.53	0.0	0.04	14.33	0.01	2.072	4.12	0.77	1.7	98.3	0.0	2.49	0.61	0.61	1.83	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	44650	5566	6	0	4	0	0	logfile
✔	7P92	13258	2023-07-05	2021-07-23	2.7	2.17	2.57	2.3	0.003	0.56	1.0	0.04	14.12	0.00	1.985	4.69	0.18	3.7	96.3	0.0	0.23	0.52	0.78	3.78	2.4	0.002	0.52	0.0	0.04	17.07	0.00	2.196	5.77	1.20	2.7	97.3	0.0	0.75	1.88	0.51	0.78	3.47	10436	1322	9	0	12	157	0	logfile
✔	8AG3	15414	2023-07-03	2022-07-19	3.47	2.17	3.26	2.0	0.002	0.60	0.0	0.04	17.16	0.01	2.143	8.90	0.00	6.6	93.4	0.0	-1.45	0.61	0.73	3.03	2.0	0.003	0.64	0.0	0.05	17.42	0.00	2.092	9.28	1.95	7.5	92.5	0.0	-1.11	0.33	0.63	0.77	2.96	2632	322	2	0	0	0	0	logfile
✔	7WPC	32682	2023-07-04	2022-01-23	2.57	2.17	—	2.0	0.004	0.72	0.0	0.05	14.23	0.01	2.253	2.54	0.12	4.2	95.8	0.0	-4.19	0.69	0.72	2.24	1.9	0.003	0.61	0.0	0.04	17.18	0.00	1.955	9.72	1.62	3.9	96.1	0.0	-0.76	1.32	0.74	0.81	2.91	8057	980	6	0	9	0	0	logfile
✔	7SRQ	25401	2023-07-03	2021-11-08	2.7	2.17	—	1.9	0.008	0.80	0.0	0.05	13.54	0.01	2.296	8.67	1.50	2.8	97.2	0.0	0.29	0.70	0.72	4.55	2.7	0.004	0.76	0.0	0.04	15.44	0.00	2.264	8.93	3.50	3.2	96.8	0.0	0.20	0.48	0.72	0.77	3.78	1960	254	1	0	2	0	0	logfile
✔	7XA3	33086	2023-07-05	2022-03-17	2.9	2.18	—	2.1	0.005	0.85	0.0	0.05	7.87	0.01	2.250	4.13	0.00	2.5	97.5	0.0	0.60	0.75	0.74	3.21	1.8	0.003	0.62	0.0	0.04	14.17	0.00	2.192	9.41	2.38	3.4	96.6	0.0	1.61	1.17	0.78	0.78	2.75	9591	1220	6	0	0	0	0	logfile
✔	8DZQ	27805	2023-07-04	2022-08-08	2.82	2.18	2.79	2.1	0.019	0.79	0.0	0.11	13.31	0.00	2.244	6.40	0.23	6.2	93.8	0.0	-0.46	0.74	0.71	3.49	2.1	0.004	0.69	0.0	0.04	15.86	0.00	2.114	9.15	2.18	6.0	94.0	0.0	-0.07	0.30	0.76	0.75	2.91	8342	1100	5	0	1	0	0	logfile
✔	8DPF	27633	2023-07-04	2022-07-15	2.84	2.18	2.90	2.0	0.004	0.77	0.0	0.07	10.32	0.00	2.093	3.46	0.12	1.8	98.2	0.0	1.40	0.78	0.77	4.38	2.0	0.004	0.65	0.0	0.04	14.15	0.00	2.155	4.34	1.46	3.2	96.8	0.0	0.70	1.02	0.80	0.80	3.07	8160	1093	6	0	2	0	0	logfile
✔	8DBE	27281	2023-07-07	2022-06-14	2.1	2.18	2.26	2.2	0.014	0.99	0.0	0.05	17.66	0.05	1.867	9.20	3.05	4.1	95.9	0.0	0.97	0.73	0.90	6.43	2.2	0.003	1.76	0.0	0.05	17.32	0.00	1.850	6.81	1.87	2.7	97.3	0.0	0.27	0.34	0.74	0.91	6.36	14982	1896	18	0	30	42	0	logfile
✔	6LXV	30007	2023-07-04	2020-02-12	2.1	2.18	—	2.2	0.025	1.66	0.0	0.12	16.07	0.01	2.196	2.01	2.81	3.9	95.9	0.1	-1.79	0.78	0.91	6.69	2.2	0.002	0.57	0.0	0.04	16.46	0.00	2.149	4.16	0.92	2.3	97.7	0.0	1.03	0.92	0.79	0.91	6.13	54924	6448	24	0	16	2967	0	logfile
✔	6X3T	22032	2023-07-08	2020-05-21	2.55	2.18	2.60	2.5	0.005	0.66	0.0	0.05	13.21	0.00	2.171	6.00	2.28	3.0	97.0	0.0	-0.78	0.73	0.82	4.33	2.5	0.004	0.62	0.0	0.04	15.86	0.00	2.144	6.89	3.03	2.7	97.3	0.0	0.90	0.38	0.77	0.85	4.10	17415	2121	18	0	27	0	0	logfile

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