Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8D1G	27129	2023-02-22	2022-05-27	2.07	2.29	2.10	2.3	0.006	0.69	0.0	0.04	19.81	0.00	2.207	13.54	0.66	1.2	98.8	0.0	1.81	0.74	0.85	5.81	2.3	0.006	0.68	0.0	0.05	17.43	0.01	2.142	7.69	0.52	1.3	98.7	0.0	1.57	0.91	0.71	0.86	5.67	16201	1735	15	0	61	620	0	logfile
✔	6SK0	10219	2023-02-17	2019-08-14	2.3	2.30	2.11	2.2	0.008	0.74	0.0	0.05	15.85	0.00	2.202	9.23	0.97	3.3	96.7	0.0	-1.30	0.70	0.83	6.89	2.2	0.006	0.75	0.0	0.05	17.30	0.00	2.171	10.77	0.65	4.2	95.8	0.0	-1.34	1.50	0.80	0.91	6.92	5826	792	3	0	0	0	0	logfile
✔	7QET	13940	2023-02-23	2021-12-03	2.1	2.53	2.11	2.3	0.009	0.63	0.0	0.04	13.40	0.00	2.140	1.99	2.38	2.2	97.8	0.0	1.49	0.82	0.90	3.95	2.3	0.003	0.52	0.0	0.04	14.36	0.00	2.194	3.17	1.93	1.2	98.8	0.0	3.60	0.39	0.82	0.92	3.53	19205	2256	36	0	60	305	0	logfile
✔	8A2Z	15109	2023-02-21	2022-06-06	2.15	2.27	2.11	2.2	0.004	0.58	0.0	0.04	11.91	0.00	2.190	1.81	0.00	2.1	97.7	0.3	-1.13	0.74	0.87	6.56	2.2	0.003	0.59	0.0	0.04	15.50	0.00	2.041	4.24	0.52	1.7	98.3	0.0	1.11	1.46	0.74	0.89	5.98	15060	1830	15	0	10	570	0	logfile
✔	7ZZ6	15036	2023-02-18	2022-05-25	2.15	2.39	2.12	2.1	0.006	0.68	0.0	0.04	17.30	0.00	1.385	8.71	3.48	2.9	97.1	0.0	0.64	0.91	0.90	4.87	2.1	0.004	0.61	0.0	0.04	17.09	0.00	1.999	8.27	3.14	3.0	97.0	0.0	0.69	0.24	0.93	0.92	4.82	8257	1017	6	0	6	157	0	logfile
✔	7SC8	25029	2023-02-22	2021-09-27	2.1	2.19	2.13	1.9	0.008	1.12	10.0	0.07	15.00	0.01	2.102	5.20	0.38	1.0	99.0	0.0	2.13	0.82	0.79	4.35	1.9	0.004	0.57	0.0	0.04	16.48	0.00	2.130	8.45	0.93	1.1	98.9	0.0	2.82	0.36	0.86	0.87	4.19	56784	6836	116	0	54	2672	0	logfile
✔	7QK1	14028	2023-02-17	2021-12-17	3.03	3.20	2.13	3.2	0.011	1.97	2.0	0.11	12.98	0.01	2.502	0.00	0.00	5.5	94.5	0.0	-1.61	0.48	0.84	4.10	3.2	0.004	0.75	0.0	0.05	16.44	0.00	2.210	6.55	0.51	3.7	96.3	0.0	-1.82	3.39	0.41	0.84	4.27	3444	450	6	0	0	0	0	logfile
✔	8D1L	27134	2023-02-22	2022-05-27	2.12	2.70	2.13	2.6	0.005	0.94	0.0	0.04	17.56	0.00	2.222	4.07	1.18	1.6	98.4	0.0	1.75	0.72	0.89	4.78	2.6	0.003	0.53	0.0	0.04	16.68	0.00	2.267	5.13	0.94	1.6	98.4	0.0	1.88	1.70	0.64	0.87	4.34	16306	1880	10	0	46	0	0	logfile
✔	8A2R	15104	2023-02-21	2022-06-06	2.17	2.31	2.13	2.2	0.005	0.67	0.0	0.04	13.67	0.00	1.880	2.75	0.65	2.5	97.5	0.0	-1.52	0.72	0.86	5.94	2.2	0.002	0.57	0.0	0.04	16.82	0.00	1.938	3.48	0.90	1.4	98.6	0.0	1.29	1.70	0.73	0.90	5.61	14990	1830	15	0	15	480	0	logfile
✔	7P6B	13224	2023-02-17	2021-07-15	2.2	1.98	2.14	2.1	0.004	0.75	0.0	0.09	13.80	0.01	2.246	4.21	0.00	3.8	96.2	0.0	-2.60	0.48	0.85	6.24	2.0	0.005	0.67	0.0	0.05	17.01	0.00	2.132	7.10	0.43	4.7	95.3	0.0	-2.28	2.23	0.49	0.88	6.77	4060	540	5	0	0	0	0	logfile
✔	6QJQ	4566	2023-02-16	2019-01-24	3.7	3.99	2.14	4.1	0.021	1.17	0.0	0.11	13.36	0.01	2.499	5.58	0.00	4.0	94.0	2.0	-4.41	0.39	0.75	2.60	4.1	0.005	0.77	0.0	0.05	14.41	0.00	2.276	11.56	0.00	6.0	94.0	0.0	-2.81	1.25	0.37	0.75	2.23	1218	162	6	0	0	0	0	logfile
✔	6RJU	4906	2023-02-16	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	9.8	0.003	0.63	0.0	0.03	15.97	0.00	2.424	6.03	0.00	6.2	93.8	0.0	-0.13	1.31	0.27	0.05	0.48	1992	131	1	0	0	0	997	logfile
✔	8BC3	15961	2023-02-22	2022-10-14	2.1	2.00	2.14	2.2	0.014	2.07	0.0	0.11	17.99	0.02	2.310	1.34	11.95	3.3	96.7	0.0	-4.28	0.71	0.83	5.67	2.1	0.002	0.54	0.0	0.04	15.44	0.00	2.168	4.01	0.63	0.6	99.4	0.0	1.85	0.51	0.76	0.87	5.99	16880	2170	30	0	10	500	0	logfile
✔	7KJR	22898	2023-02-17	2020-10-26	2.08	2.52	2.15	2.4	0.006	0.84	0.0	0.05	16.31	0.00	2.254	7.60	0.25	1.8	98.2	0.0	1.13	0.68	0.87	5.29	2.4	0.003	0.53	0.0	0.04	16.24	0.00	2.088	9.90	0.99	2.1	97.9	0.0	1.24	0.40	0.66	0.87	4.76	3840	448	8	0	2	122	0	logfile
✔	8BC4	15962	2023-02-22	2022-10-14	2.7	2.11	2.15	2.5	0.015	2.14	1.0	0.11	17.93	0.02	2.310	4.45	10.79	4.1	95.8	0.0	-4.88	0.59	0.73	3.14	2.4	0.003	0.62	0.0	0.05	16.84	0.00	2.086	5.17	2.11	1.0	99.0	0.0	0.90	0.65	0.61	0.76	3.72	16440	2167	29	0	9	270	0	logfile
✘	7YPQ	34011	2023-02-17	2022-08-04	3.1	3.22	2.15	3.2	0.005	0.63	0.0	0.05	17.29	0.00	2.261	7.93	0.00	2.2	97.8	0.0	-0.66	0.52	0.79	2.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2915	327	2	11	0	0	0	logfile
✔	7SCA	25031	2023-02-22	2021-09-27	2.1	2.23	2.15	2.2	0.011	1.14	7.0	0.07	15.33	0.01	2.057	5.44	0.78	1.0	99.0	0.0	2.17	0.79	0.85	5.74	2.2	0.002	0.55	0.0	0.04	16.60	0.00	2.121	8.27	0.87	0.9	99.1	0.0	2.87	1.09	0.79	0.85	5.28	55437	6836	116	0	54	1325	0	logfile
✔	7UZQ	26916	2023-02-23	2022-05-09	2.17	2.05	2.16	2.1	0.006	0.92	0.0	0.05	16.21	0.01	2.215	4.54	2.27	1.8	98.0	0.2	2.16	0.68	0.87	5.59	2.1	0.004	0.62	0.0	0.04	16.14	0.00	2.133	5.27	1.89	2.0	97.9	0.1	1.79	0.24	0.69	0.88	5.85	20617	1315	10	0	4	235	10214	logfile
✔	8A2U	15107	2023-02-21	2022-06-06	2.21	2.31	2.16	2.3	0.004	0.63	0.0	0.04	13.27	0.00	2.173	2.75	0.65	2.5	97.5	0.0	-1.41	0.72	0.86	6.31	2.3	0.002	0.59	0.0	0.04	16.64	0.00	2.155	3.93	0.52	1.3	98.7	0.0	1.13	1.06	0.73	0.88	6.00	15022	1830	15	0	15	512	0	logfile
✔	8A2T	15106	2023-02-21	2022-06-06	2.24	2.35	2.17	2.3	0.004	0.56	0.0	0.04	13.20	0.00	1.880	2.50	0.32	1.9	98.1	0.0	-1.62	0.71	0.87	5.89	2.3	0.003	0.61	0.0	0.04	16.32	0.00	1.898	3.79	0.52	1.1	98.9	0.0	1.10	0.81	0.74	0.90	5.29	15046	1830	15	0	10	556	0	logfile

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