Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8BQV	16188	2023-08-10	2023-01-18	2.0	1.96	1.89	1.9	0.008	1.01	0.0	0.07	8.75	0.00	0.000	15.01	0.00	6.8	93.2	0.0	-2.59	0.54	0.77	8.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8595	1155	45	0	105	120	0	logfile
✔	7QEQ	13937	2023-08-15	2021-12-03	1.9	2.38	1.89	2.1	0.005	0.87	0.0	0.04	12.39	0.00	2.181	2.19	1.18	1.1	98.9	0.0	1.60	0.82	0.90	4.56	2.1	0.003	0.58	0.0	0.04	14.10	0.00	2.251	2.71	1.18	1.8	98.2	0.0	3.93	0.99	0.82	0.92	4.12	19313	2268	36	0	60	305	0	logfile
✔	8CPS	16784	2023-08-23	2023-03-03	1.82	1.69	1.90	1.7	0.003	0.66	0.0	0.05	15.42	0.01	2.116	2.82	0.00	1.0	99.0	0.0	2.28	0.75	0.81	8.54	1.7	0.003	0.58	0.0	0.04	17.00	0.00	2.154	4.46	0.16	1.2	98.8	0.0	4.78	0.30	0.77	0.83	8.39	36034	4152	72	0	38	1916	0	logfile
✔	7QKY	14057	2023-08-09	2021-12-19	1.86	2.10	1.91	2.0	0.011	1.75	3.0	0.09	12.76	0.01	2.522	1.04	0.61	4.7	95.3	0.0	-3.08	0.33	0.75	8.32	2.0	0.004	0.74	0.0	0.05	16.56	0.00	2.028	5.37	0.61	6.2	93.8	0.0	-3.22	1.00	0.39	0.84	7.47	5760	396	6	0	0	0	2862	logfile
✔	8CU8	26996	2023-08-23	2022-05-16	1.91	2.52	1.91	2.2	0.005	0.65	0.0	0.05	13.91	0.01	2.043	0.74	0.00	0.6	99.4	0.0	1.28	0.87	0.93	5.94	2.2	0.003	0.53	0.0	0.04	16.47	0.00	1.989	1.18	0.00	0.6	99.4	0.0	5.71	0.29	0.88	0.94	5.13	35271	4032	72	0	24	2271	0	logfile
✔	8AB6	15312	2023-08-22	2022-07-04	2.0	1.80	1.92	1.9	0.010	1.60	28.0	0.11	16.93	0.01	2.091	3.07	1.89	2.3	97.7	0.0	-0.82	0.68	0.86	6.61	1.9	0.004	0.68	0.0	0.04	16.61	0.00	1.996	3.87	0.65	1.7	98.3	0.0	1.95	0.98	0.73	0.87	6.06	32914	3878	53	0	30	1326	0	logfile
✔	8CAi	16526	2023-08-24	2023-01-24	2.08	1.77	1.93	1.9	0.014	1.53	2.0	0.14	13.98	0.03	1.839	0.59	0.86	3.7	96.2	0.1	-1.66	0.65	0.81	5.19	1.9	0.005	0.84	0.0	0.05	14.26	0.01	1.790	7.42	1.41	3.0	97.0	0.0	0.45	1.58	0.74	0.85	4.96	37814	1552	33	1114	90	1416	0	logfile
✔	7MBX	23749	2023-08-10	2021-04-01	1.95	2.56	1.94	2.4	0.005	0.88	1.0	0.06	11.68	0.01	2.287	2.16	0.45	1.5	98.5	0.0	-0.11	0.72	0.86	4.55	2.3	0.002	0.58	0.0	0.04	15.32	0.00	2.208	6.37	1.00	1.1	98.9	0.0	2.02	0.52	0.71	0.87	4.44	8433	1065	11	0	2	61	0	logfile
✔	6CVM	7770	2023-08-23	2018-03-28	1.9	2.49	1.94	2.3	0.012	0.92	0.0	0.06	10.16	0.01	2.053	3.70	0.00	2.7	97.3	0.0	-1.16	0.81	0.91	7.66	2.3	0.005	0.62	0.0	0.05	13.90	0.00	1.985	6.52	0.83	2.5	97.5	0.0	0.71	0.37	0.85	0.93	6.85	37062	4084	12	0	20	4194	0	logfile
✔	8iRR	35683	2023-08-14	2023-03-19	3.2	3.00	1.94	3.1	0.013	1.82	3.0	0.09	12.69	0.02	2.395	1.16	0.00	3.9	96.1	0.0	-0.37	0.53	0.79	4.38	3.0	0.002	0.54	0.0	0.04	15.15	0.00	2.018	6.63	0.45	2.9	97.1	0.0	0.50	0.79	0.55	0.82	3.29	16329	1032	5	0	4	2	8080	logfile
✔	6QJM	4564	2023-08-09	2019-01-24	3.3	3.49	1.95	3.4	0.010	1.01	0.0	0.07	8.06	0.01	2.408	6.17	0.00	9.1	90.9	0.0	-2.36	0.38	0.76	3.31	3.5	0.003	0.57	0.0	0.05	13.66	0.00	2.146	4.49	0.00	5.1	94.9	0.0	-2.42	1.59	0.33	0.73	2.58	846	111	3	0	0	0	0	logfile
✔	8D8R	27255	2023-08-09	2022-06-08	4.1	4.18	1.95	4.1	0.011	1.25	0.0	0.06	11.00	0.01	2.512	1.08	0.00	2.1	97.9	0.0	1.96	0.59	0.61	—	4.1	0.003	0.75	0.0	0.05	12.45	0.01	2.191	14.44	0.00	6.7	93.3	0.0	-0.58	1.90	0.62	0.66	—	3323	425	3	0	1	0	0	logfile
✔	6ZRF	11380	2023-08-09	2020-07-13	3.6	3.66	1.96	3.6	0.014	1.28	0.0	0.05	13.30	0.00	1.993	42.14	0.00	4.9	95.1	0.0	-6.22	0.67	0.79	1.84	3.7	0.005	0.80	0.0	0.05	14.67	0.00	2.223	24.41	0.00	12.1	87.9	0.0	-5.90	0.52	0.69	0.82	3.16	2220	300	12	0	0	0	0	logfile
✔	7MVY	24058	2023-08-19	2021-05-15	2.39	3.24	1.97	3.1	0.002	0.39	0.0	0.03	6.61	0.00	2.209	3.28	0.00	0.7	99.3	0.0	-0.54	0.72	0.64	0.92	3.0	0.004	0.62	0.0	0.04	14.21	0.00	1.966	12.50	1.86	4.0	96.0	0.0	1.26	1.65	0.76	0.75	2.15	26555	1694	2	0	0	0	13337	logfile
✔	7STW	25437	2023-08-14	2021-11-15	2.37	2.44	1.98	2.4	0.002	0.50	0.0	0.04	12.97	0.00	1.947	1.92	0.00	1.2	98.8	0.0	0.17	0.74	0.80	2.93	2.4	0.003	0.52	0.0	0.04	17.61	0.00	2.071	4.54	1.22	2.0	98.0	0.0	3.17	0.63	0.75	0.83	2.28	16829	2040	36	0	24	257	0	logfile
✔	7QKL	14046	2023-08-09	2021-12-17	2.07	2.04	1.98	2.0	0.011	2.37	0.0	0.25	12.79	0.01	2.537	0.14	0.00	3.6	96.4	0.0	-1.75	0.40	0.83	7.75	2.0	0.003	0.62	0.0	0.05	17.01	0.00	2.552	3.25	0.25	2.7	97.3	0.0	-1.29	2.03	0.44	0.91	7.62	3468	456	6	0	0	0	0	logfile
✘	7Z15	14441	2023-08-26	2022-02-24	1.93	2.40	1.98	2.3	0.012	1.01	9.0	0.06	15.49	0.01	1.723	3.87	0.83	1.6	98.4	0.0	1.32	0.83	0.86	6.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	46112	2888	32	0	16	1171	22357	logfile
✔	6GKM	0024	2023-08-11	2018-05-21	3.87	4.07	2.00	4.0	0.007	0.98	0.0	0.05	10.31	0.00	2.134	11.37	0.16	9.7	90.2	0.1	-3.66	0.63	0.81	2.22	4.0	0.002	0.71	0.0	0.04	13.76	0.00	2.109	20.52	0.16	7.9	92.1	0.0	-0.09	1.48	0.62	0.82	2.34	10562	689	4	28	2	0	4402	logfile
✔	8G6Y	29788	2023-08-22	2023-02-16	2.09	1.85	2.01	1.9	0.007	0.89	0.0	0.05	14.74	0.03	1.446	5.72	3.72	3.5	96.3	0.2	-1.60	0.73	0.86	6.08	2.0	0.006	0.94	0.0	0.05	15.01	0.01	1.694	5.60	2.44	3.6	96.3	0.1	-0.30	1.19	0.73	0.89	6.01	93683	3175	69	3037	250	3460	0	logfile
✔	6SAG	10130	2023-08-09	2019-07-16	2.0	2.11	2.01	2.1	0.004	0.65	0.0	0.04	12.99	0.00	0.351	2.79	0.00	2.6	97.4	0.0	-0.33	0.58	0.86	6.64	2.1	0.004	0.66	0.0	0.04	15.32	0.01	2.026	3.22	1.43	2.9	97.1	0.0	1.37	0.73	0.60	0.90	6.95	54080	6120	240	120	240	2840	0	logfile

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