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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8BQV | 16188 | 2023-08-10 | 2023-01-18 | 2.0 | 1.96 | 1.89 | 1.9 | 0.008 | 1.01 | 0.0 | 0.07 | 8.75 | 0.00 | 0.000 | 15.01 | 0.00 | 6.8 | 93.2 | 0.0 | -2.59 | 0.54 | 0.77 | 8.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8595 | 1155 | 45 | 0 | 105 | 120 | 0 | logfile |
✔ | 7QEQ | 13937 | 2023-08-15 | 2021-12-03 | 1.9 | 2.38 | 1.89 | 2.1 | 0.005 | 0.87 | 0.0 | 0.04 | 12.39 | 0.00 | 2.181 | 2.19 | 1.18 | 1.1 | 98.9 | 0.0 | 1.60 | 0.82 | 0.90 | 4.56 | 2.1 | 0.003 | 0.58 | 0.0 | 0.04 | 14.10 | 0.00 | 2.251 | 2.71 | 1.18 | 1.8 | 98.2 | 0.0 | 3.93 | 0.99 | 0.82 | 0.92 | 4.12 | 19313 | 2268 | 36 | 0 | 60 | 305 | 0 | logfile |
✔ | 8CPS | 16784 | 2023-08-23 | 2023-03-03 | 1.82 | 1.69 | 1.90 | 1.7 | 0.003 | 0.66 | 0.0 | 0.05 | 15.42 | 0.01 | 2.116 | 2.82 | 0.00 | 1.0 | 99.0 | 0.0 | 2.28 | 0.75 | 0.81 | 8.54 | 1.7 | 0.003 | 0.58 | 0.0 | 0.04 | 17.00 | 0.00 | 2.154 | 4.46 | 0.16 | 1.2 | 98.8 | 0.0 | 4.78 | 0.30 | 0.77 | 0.83 | 8.39 | 36034 | 4152 | 72 | 0 | 38 | 1916 | 0 | logfile |
✔ | 7QKY | 14057 | 2023-08-09 | 2021-12-19 | 1.86 | 2.10 | 1.91 | 2.0 | 0.011 | 1.75 | 3.0 | 0.09 | 12.76 | 0.01 | 2.522 | 1.04 | 0.61 | 4.7 | 95.3 | 0.0 | -3.08 | 0.33 | 0.75 | 8.32 | 2.0 | 0.004 | 0.74 | 0.0 | 0.05 | 16.56 | 0.00 | 2.028 | 5.37 | 0.61 | 6.2 | 93.8 | 0.0 | -3.22 | 1.00 | 0.39 | 0.84 | 7.47 | 5760 | 396 | 6 | 0 | 0 | 0 | 2862 | logfile |
✔ | 8CU8 | 26996 | 2023-08-23 | 2022-05-16 | 1.91 | 2.52 | 1.91 | 2.2 | 0.005 | 0.65 | 0.0 | 0.05 | 13.91 | 0.01 | 2.043 | 0.74 | 0.00 | 0.6 | 99.4 | 0.0 | 1.28 | 0.87 | 0.93 | 5.94 | 2.2 | 0.003 | 0.53 | 0.0 | 0.04 | 16.47 | 0.00 | 1.989 | 1.18 | 0.00 | 0.6 | 99.4 | 0.0 | 5.71 | 0.29 | 0.88 | 0.94 | 5.13 | 35271 | 4032 | 72 | 0 | 24 | 2271 | 0 | logfile |
✔ | 8AB6 | 15312 | 2023-08-22 | 2022-07-04 | 2.0 | 1.80 | 1.92 | 1.9 | 0.010 | 1.60 | 28.0 | 0.11 | 16.93 | 0.01 | 2.091 | 3.07 | 1.89 | 2.3 | 97.7 | 0.0 | -0.82 | 0.68 | 0.86 | 6.61 | 1.9 | 0.004 | 0.68 | 0.0 | 0.04 | 16.61 | 0.00 | 1.996 | 3.87 | 0.65 | 1.7 | 98.3 | 0.0 | 1.95 | 0.98 | 0.73 | 0.87 | 6.06 | 32914 | 3878 | 53 | 0 | 30 | 1326 | 0 | logfile |
✔ | 8CAi | 16526 | 2023-08-24 | 2023-01-24 | 2.08 | 1.77 | 1.93 | 1.9 | 0.014 | 1.53 | 2.0 | 0.14 | 13.98 | 0.03 | 1.839 | 0.59 | 0.86 | 3.7 | 96.2 | 0.1 | -1.66 | 0.65 | 0.81 | 5.19 | 1.9 | 0.005 | 0.84 | 0.0 | 0.05 | 14.26 | 0.01 | 1.790 | 7.42 | 1.41 | 3.0 | 97.0 | 0.0 | 0.45 | 1.58 | 0.74 | 0.85 | 4.96 | 37814 | 1552 | 33 | 1114 | 90 | 1416 | 0 | logfile |
✔ | 7MBX | 23749 | 2023-08-10 | 2021-04-01 | 1.95 | 2.56 | 1.94 | 2.4 | 0.005 | 0.88 | 1.0 | 0.06 | 11.68 | 0.01 | 2.287 | 2.16 | 0.45 | 1.5 | 98.5 | 0.0 | -0.11 | 0.72 | 0.86 | 4.55 | 2.3 | 0.002 | 0.58 | 0.0 | 0.04 | 15.32 | 0.00 | 2.208 | 6.37 | 1.00 | 1.1 | 98.9 | 0.0 | 2.02 | 0.52 | 0.71 | 0.87 | 4.44 | 8433 | 1065 | 11 | 0 | 2 | 61 | 0 | logfile |
✔ | 6CVM | 7770 | 2023-08-23 | 2018-03-28 | 1.9 | 2.49 | 1.94 | 2.3 | 0.012 | 0.92 | 0.0 | 0.06 | 10.16 | 0.01 | 2.053 | 3.70 | 0.00 | 2.7 | 97.3 | 0.0 | -1.16 | 0.81 | 0.91 | 7.66 | 2.3 | 0.005 | 0.62 | 0.0 | 0.05 | 13.90 | 0.00 | 1.985 | 6.52 | 0.83 | 2.5 | 97.5 | 0.0 | 0.71 | 0.37 | 0.85 | 0.93 | 6.85 | 37062 | 4084 | 12 | 0 | 20 | 4194 | 0 | logfile |
✔ | 8iRR | 35683 | 2023-08-14 | 2023-03-19 | 3.2 | 3.00 | 1.94 | 3.1 | 0.013 | 1.82 | 3.0 | 0.09 | 12.69 | 0.02 | 2.395 | 1.16 | 0.00 | 3.9 | 96.1 | 0.0 | -0.37 | 0.53 | 0.79 | 4.38 | 3.0 | 0.002 | 0.54 | 0.0 | 0.04 | 15.15 | 0.00 | 2.018 | 6.63 | 0.45 | 2.9 | 97.1 | 0.0 | 0.50 | 0.79 | 0.55 | 0.82 | 3.29 | 16329 | 1032 | 5 | 0 | 4 | 2 | 8080 | logfile |
✔ | 6QJM | 4564 | 2023-08-09 | 2019-01-24 | 3.3 | 3.49 | 1.95 | 3.4 | 0.010 | 1.01 | 0.0 | 0.07 | 8.06 | 0.01 | 2.408 | 6.17 | 0.00 | 9.1 | 90.9 | 0.0 | -2.36 | 0.38 | 0.76 | 3.31 | 3.5 | 0.003 | 0.57 | 0.0 | 0.05 | 13.66 | 0.00 | 2.146 | 4.49 | 0.00 | 5.1 | 94.9 | 0.0 | -2.42 | 1.59 | 0.33 | 0.73 | 2.58 | 846 | 111 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8D8R | 27255 | 2023-08-09 | 2022-06-08 | 4.1 | 4.18 | 1.95 | 4.1 | 0.011 | 1.25 | 0.0 | 0.06 | 11.00 | 0.01 | 2.512 | 1.08 | 0.00 | 2.1 | 97.9 | 0.0 | 1.96 | 0.59 | 0.61 | — | 4.1 | 0.003 | 0.75 | 0.0 | 0.05 | 12.45 | 0.01 | 2.191 | 14.44 | 0.00 | 6.7 | 93.3 | 0.0 | -0.58 | 1.90 | 0.62 | 0.66 | — | 3323 | 425 | 3 | 0 | 1 | 0 | 0 | logfile |
✔ | 6ZRF | 11380 | 2023-08-09 | 2020-07-13 | 3.6 | 3.66 | 1.96 | 3.6 | 0.014 | 1.28 | 0.0 | 0.05 | 13.30 | 0.00 | 1.993 | 42.14 | 0.00 | 4.9 | 95.1 | 0.0 | -6.22 | 0.67 | 0.79 | 1.84 | 3.7 | 0.005 | 0.80 | 0.0 | 0.05 | 14.67 | 0.00 | 2.223 | 24.41 | 0.00 | 12.1 | 87.9 | 0.0 | -5.90 | 0.52 | 0.69 | 0.82 | 3.16 | 2220 | 300 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MVY | 24058 | 2023-08-19 | 2021-05-15 | 2.39 | 3.24 | 1.97 | 3.1 | 0.002 | 0.39 | 0.0 | 0.03 | 6.61 | 0.00 | 2.209 | 3.28 | 0.00 | 0.7 | 99.3 | 0.0 | -0.54 | 0.72 | 0.64 | 0.92 | 3.0 | 0.004 | 0.62 | 0.0 | 0.04 | 14.21 | 0.00 | 1.966 | 12.50 | 1.86 | 4.0 | 96.0 | 0.0 | 1.26 | 1.65 | 0.76 | 0.75 | 2.15 | 26555 | 1694 | 2 | 0 | 0 | 0 | 13337 | logfile |
✔ | 7STW | 25437 | 2023-08-14 | 2021-11-15 | 2.37 | 2.44 | 1.98 | 2.4 | 0.002 | 0.50 | 0.0 | 0.04 | 12.97 | 0.00 | 1.947 | 1.92 | 0.00 | 1.2 | 98.8 | 0.0 | 0.17 | 0.74 | 0.80 | 2.93 | 2.4 | 0.003 | 0.52 | 0.0 | 0.04 | 17.61 | 0.00 | 2.071 | 4.54 | 1.22 | 2.0 | 98.0 | 0.0 | 3.17 | 0.63 | 0.75 | 0.83 | 2.28 | 16829 | 2040 | 36 | 0 | 24 | 257 | 0 | logfile |
✔ | 7QKL | 14046 | 2023-08-09 | 2021-12-17 | 2.07 | 2.04 | 1.98 | 2.0 | 0.011 | 2.37 | 0.0 | 0.25 | 12.79 | 0.01 | 2.537 | 0.14 | 0.00 | 3.6 | 96.4 | 0.0 | -1.75 | 0.40 | 0.83 | 7.75 | 2.0 | 0.003 | 0.62 | 0.0 | 0.05 | 17.01 | 0.00 | 2.552 | 3.25 | 0.25 | 2.7 | 97.3 | 0.0 | -1.29 | 2.03 | 0.44 | 0.91 | 7.62 | 3468 | 456 | 6 | 0 | 0 | 0 | 0 | logfile |
✘ | 7Z15 | 14441 | 2023-08-26 | 2022-02-24 | 1.93 | 2.40 | 1.98 | 2.3 | 0.012 | 1.01 | 9.0 | 0.06 | 15.49 | 0.01 | 1.723 | 3.87 | 0.83 | 1.6 | 98.4 | 0.0 | 1.32 | 0.83 | 0.86 | 6.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 46112 | 2888 | 32 | 0 | 16 | 1171 | 22357 | logfile |
✔ | 6GKM | 0024 | 2023-08-11 | 2018-05-21 | 3.87 | 4.07 | 2.00 | 4.0 | 0.007 | 0.98 | 0.0 | 0.05 | 10.31 | 0.00 | 2.134 | 11.37 | 0.16 | 9.7 | 90.2 | 0.1 | -3.66 | 0.63 | 0.81 | 2.22 | 4.0 | 0.002 | 0.71 | 0.0 | 0.04 | 13.76 | 0.00 | 2.109 | 20.52 | 0.16 | 7.9 | 92.1 | 0.0 | -0.09 | 1.48 | 0.62 | 0.82 | 2.34 | 10562 | 689 | 4 | 28 | 2 | 0 | 4402 | logfile |
✔ | 8G6Y | 29788 | 2023-08-22 | 2023-02-16 | 2.09 | 1.85 | 2.01 | 1.9 | 0.007 | 0.89 | 0.0 | 0.05 | 14.74 | 0.03 | 1.446 | 5.72 | 3.72 | 3.5 | 96.3 | 0.2 | -1.60 | 0.73 | 0.86 | 6.08 | 2.0 | 0.006 | 0.94 | 0.0 | 0.05 | 15.01 | 0.01 | 1.694 | 5.60 | 2.44 | 3.6 | 96.3 | 0.1 | -0.30 | 1.19 | 0.73 | 0.89 | 6.01 | 93683 | 3175 | 69 | 3037 | 250 | 3460 | 0 | logfile |
✔ | 6SAG | 10130 | 2023-08-09 | 2019-07-16 | 2.0 | 2.11 | 2.01 | 2.1 | 0.004 | 0.65 | 0.0 | 0.04 | 12.99 | 0.00 | 0.351 | 2.79 | 0.00 | 2.6 | 97.4 | 0.0 | -0.33 | 0.58 | 0.86 | 6.64 | 2.1 | 0.004 | 0.66 | 0.0 | 0.04 | 15.32 | 0.01 | 2.026 | 3.22 | 1.43 | 2.9 | 97.1 | 0.0 | 1.37 | 0.73 | 0.60 | 0.90 | 6.95 | 54080 | 6120 | 240 | 120 | 240 | 2840 | 0 | logfile |