Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6RWK	10040	2023-04-26	2019-06-05	3.86	3.95	2.39	3.9	0.007	0.76	0.0	0.05	13.64	0.00	2.183	14.79	5.83	12.2	87.8	0.0	-3.93	0.53	0.87	3.51	3.9	0.004	0.87	0.0	0.05	16.68	0.01	2.109	16.90	0.62	9.5	90.5	0.0	-1.15	0.86	0.54	0.86	3.19	21760	2688	32	0	0	0	0	logfile
✔	7ZYZ	15029	2023-04-20	2022-05-25	2.47	2.56	2.40	2.2	0.007	0.87	0.0	0.05	18.66	0.01	1.973	9.47	5.45	2.8	97.2	0.0	-0.23	0.87	0.87	3.85	2.2	0.003	0.53	0.0	0.04	18.47	0.00	2.092	7.60	4.36	1.9	98.1	0.0	0.72	0.42	0.88	0.88	3.32	4349	541	1	0	2	38	0	logfile
✔	7M3N	23658	2023-04-20	2021-03-18	2.4	2.15	2.40	1.9	0.005	0.63	0.0	0.04	15.95	0.00	2.168	5.79	4.28	4.3	95.6	0.1	-2.53	0.43	0.82	4.98	2.0	0.002	0.55	0.0	0.04	16.96	0.00	2.273	6.81	2.75	3.7	96.3	0.0	-0.46	0.48	0.45	0.84	4.74	6004	759	3	0	0	0	0	logfile
✔	8G86	29837	2023-04-22	2023-02-17	2.3	2.24	2.41	2.5	0.003	0.50	0.0	0.03	27.67	0.00	2.275	6.71	0.95	0.9	99.1	0.0	1.60	0.69	0.83	5.02	2.4	0.005	0.63	0.0	0.04	29.42	0.00	2.112	7.41	2.06	1.5	98.5	0.0	2.50	0.92	0.70	0.85	4.86	11972	759	10	290	0	0	0	logfile
✔	7P0Z	13153	2023-04-22	2021-07-01	2.43	2.02	2.41	2.2	0.016	0.94	0.0	0.06	14.02	0.01	2.141	7.29	0.00	4.3	95.7	0.0	1.90	0.83	0.86	2.91	2.3	0.002	0.49	0.0	0.03	18.12	0.00	2.239	4.38	1.64	0.7	99.3	0.0	5.47	0.55	0.84	0.87	2.18	12873	1652	7	0	0	0	0	logfile
✔	7Ki0	22882	2023-04-21	2020-10-22	2.5	2.66	2.41	2.6	0.007	0.87	0.0	0.06	13.74	0.00	2.218	7.79	0.10	3.0	97.0	0.0	-0.60	0.66	0.85	4.49	2.6	0.003	0.51	0.0	0.04	16.24	0.00	2.169	4.47	1.33	2.1	97.9	0.0	1.42	1.01	0.68	0.89	3.95	9242	1143	12	0	1	79	0	logfile
✔	7PXE	13700	2023-04-28	2021-10-08	2.38	2.90	2.41	2.7	0.005	0.73	0.0	0.04	16.55	0.00	2.151	5.31	1.94	1.0	99.0	0.0	1.17	0.79	0.87	3.74	2.7	0.002	0.45	0.0	0.04	16.00	0.00	2.170	4.81	2.07	1.4	98.6	0.0	1.73	0.33	0.79	0.89	4.13	28928	3540	12	0	36	136	0	logfile
✔	7VDA	31912	2023-04-26	2021-09-06	2.26	2.04	2.42	2.1	0.003	0.53	0.0	0.04	17.67	0.00	2.142	7.99	2.20	2.6	97.4	0.0	1.67	0.66	0.82	4.06	2.0	0.002	0.54	0.0	0.04	18.07	0.00	2.051	8.99	2.60	2.1	97.9	0.0	1.12	0.41	0.66	0.84	4.19	23292	2976	6	0	0	0	0	logfile
✔	7N5G	24189	2023-04-19	2021-06-05	2.4	2.16	2.42	1.5	0.022	1.51	0.0	0.09	10.57	0.01	2.386	0.17	0.00	0.8	99.2	0.0	1.84	0.40	0.79	3.64	1.5	0.003	0.57	0.0	0.04	16.52	0.00	2.220	4.78	2.61	1.4	98.6	0.0	2.92	1.20	0.39	0.80	2.57	2926	371	1	0	1	0	0	logfile
✔	7BoJ	30130	2023-04-25	2020-03-19	2.5	2.54	2.42	2.5	0.007	0.92	0.0	0.06	12.86	0.01	2.271	3.35	0.00	2.4	97.6	0.0	-2.48	0.77	0.86	4.26	2.5	0.005	0.67	0.0	0.05	15.81	0.00	2.132	7.61	2.17	2.2	97.8	0.0	1.73	1.86	0.78	0.88	4.15	121500	15900	60	0	0	0	0	logfile
✔	7UZE	26886	2023-04-23	2022-05-09	2.4	2.27	2.42	2.3	0.003	0.58	0.0	0.04	15.32	0.00	2.040	3.56	0.68	3.0	96.6	0.4	1.69	0.66	0.88	6.32	2.3	0.002	0.51	0.0	0.04	14.96	0.00	2.086	5.01	0.95	3.2	96.4	0.4	1.42	0.16	0.65	0.87	6.36	14969	988	12	0	4	113	7392	logfile
✔	8CVN	27010	2023-04-20	2022-05-18	2.4	3.23	2.42	3.1	0.014	1.53	3.0	0.08	17.97	0.00	2.524	1.49	1.21	2.4	97.6	0.0	0.60	0.84	0.87	3.98	3.1	0.002	0.82	0.0	0.04	18.09	0.00	2.305	2.98	2.17	1.6	98.4	0.0	1.58	0.81	0.76	0.87	3.33	4054	512	4	0	4	0	0	logfile
✔	7TJ5	25916	2023-04-22	2022-01-14	2.41	3.25	2.42	2.9	0.006	1.92	0.0	0.05	19.56	0.01	2.285	5.53	0.22	5.4	94.6	0.0	0.48	0.69	0.72	2.97	2.9	0.004	0.72	0.0	0.04	17.16	0.00	2.319	8.30	1.34	3.9	96.1	0.0	1.98	1.48	0.73	0.85	2.51	13152	1568	8	0	32	0	0	logfile
✔	6QFA	4542	2023-04-24	2019-01-09	2.49	2.59	2.43	2.6	0.006	0.80	0.0	0.06	10.81	0.01	1.973	5.30	0.00	1.8	98.2	0.0	-2.14	0.73	0.85	4.50	2.6	0.003	0.58	0.0	0.04	14.45	0.00	2.191	6.35	1.22	1.2	98.8	0.0	1.27	1.18	0.75	0.88	3.83	18755	2270	20	0	35	0	0	logfile
✔	6Fo0	4286	2023-04-21	2018-02-05	4.1	4.16	2.43	4.1	0.012	0.96	0.0	0.05	8.97	0.01	2.040	5.54	0.00	10.2	89.8	0.1	-4.55	0.72	0.79	—	4.1	0.003	0.61	0.0	0.04	12.56	0.00	1.904	10.30	0.00	5.8	94.2	0.0	-1.21	2.42	0.74	0.81	—	61356	3910	24	0	8	0	30362	logfile
✔	6ZHX	11220	2023-04-22	2020-06-24	2.5	3.01	2.43	2.7	0.005	0.92	0.0	0.06	26.86	0.01	2.203	2.63	0.46	1.0	99.0	0.0	0.63	0.88	0.90	5.80	2.7	0.005	0.60	0.0	0.04	28.52	0.00	2.180	4.72	0.62	0.9	99.1	0.0	2.83	0.45	0.89	0.92	4.54	12313	784	22	290	0	146	0	logfile
✔	8D1K	27133	2023-04-23	2022-05-27	2.28	2.51	2.43	2.5	0.013	1.28	0.0	0.07	18.10	0.01	2.287	6.59	2.65	1.1	98.9	0.0	0.89	0.70	0.91	4.11	2.5	0.004	0.58	0.0	0.04	17.05	0.00	2.240	5.19	1.59	0.9	99.1	0.0	1.18	0.37	0.66	0.89	4.00	16305	1880	10	0	45	0	0	logfile
✔	7R4H	14312	2023-04-24	2022-02-08	2.34	3.05	2.43	2.9	0.006	1.22	1.0	0.06	19.22	0.01	2.119	5.33	3.93	3.7	96.3	0.0	-3.26	0.80	0.83	2.89	2.9	0.003	0.63	0.0	0.04	18.72	0.00	1.912	10.30	3.88	3.0	97.0	0.0	0.42	1.33	0.79	0.83	3.29	16485	2049	9	0	4	0	0	logfile
✔	7ZH1	14717	2023-04-27	2022-04-05	2.48	2.28	2.44	2.3	0.007	1.14	0.0	0.07	16.66	0.02	2.120	5.11	2.38	4.3	95.2	0.5	-0.18	0.71	0.79	3.85	2.3	0.005	0.78	0.0	0.05	17.05	0.01	2.194	3.50	2.19	4.9	95.1	0.1	-0.60	0.52	0.74	0.84	4.34	24501	3060	9	0	39	0	0	logfile
✔	7TBG	25798	2023-04-28	2021-12-22	2.5	2.10	2.44	1.8	0.006	0.76	0.0	0.05	13.03	0.01	2.268	1.89	0.57	3.2	96.8	0.0	0.60	0.75	0.79	4.65	1.8	0.005	0.59	0.0	0.04	16.05	0.00	2.102	5.00	1.23	2.0	98.0	0.0	2.29	1.13	0.77	0.82	3.61	19679	1190	6	0	5	20	9858	logfile

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