Table showing results for November 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UAK	26427	2023-11-13	2022-03-13	3.38	3.45	2.13	3.6	0.003	0.70	0.0	0.05	13.75	0.00	2.407	13.48	0.00	14.4	85.6	0.0	-2.82	0.31	0.67	2.41	3.6	0.004	0.76	0.0	0.05	16.77	0.00	2.270	8.54	0.00	20.3	79.7	0.0	-3.45	0.63	0.37	0.76	1.90	2586	372	6	0	0	0	0	logfile
✔	7SC8	25029	2023-11-14	2021-09-27	2.1	2.19	2.13	1.9	0.008	1.12	10.0	0.07	15.00	0.01	2.102	5.20	0.38	1.0	99.0	0.0	2.13	0.82	0.79	4.35	1.9	0.004	0.57	0.0	0.04	16.48	0.00	2.130	8.45	0.93	1.1	98.9	0.0	2.82	0.36	0.86	0.87	4.19	56784	6836	116	0	54	2672	0	logfile
✔	8D1L	27134	2023-11-16	2022-05-27	2.12	2.70	2.13	2.6	0.005	0.94	0.0	0.04	17.56	0.00	2.222	4.07	1.18	1.6	98.4	0.0	1.75	0.72	0.89	4.78	2.6	0.003	0.53	0.0	0.04	16.68	0.00	2.267	5.13	0.94	1.6	98.4	0.0	1.88	1.70	0.64	0.87	4.34	16306	1880	10	0	46	0	0	logfile
✔	6RJU	4906	2023-11-13	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	9.8	0.003	0.63	0.0	0.03	15.97	0.00	2.424	6.03	0.00	6.2	93.8	0.0	-0.13	1.31	0.27	0.05	0.48	1992	131	1	0	0	0	997	logfile
✔	7TYF	26178	2023-11-15	2022-02-13	2.2	2.16	2.14	2.2	0.011	0.57	0.0	0.04	14.45	0.00	2.234	4.87	0.87	1.8	98.2	0.0	-1.73	0.64	0.82	5.12	2.2	0.003	0.63	0.0	0.04	16.15	0.00	2.210	6.89	1.55	2.2	97.8	0.0	0.99	0.50	0.66	0.86	4.51	10331	1266	12	0	16	83	0	logfile
✔	8iJV	35500	2023-11-15	2023-02-28	2.1	2.26	2.14	2.3	0.008	1.11	0.0	0.07	18.50	0.01	1.973	7.26	2.73	2.1	97.9	0.0	1.17	0.62	0.83	5.35	2.3	0.003	0.69	0.0	0.07	18.35	0.00	1.967	5.69	2.92	2.2	97.8	0.0	1.08	0.16	0.64	0.85	5.26	10532	1251	6	0	12	369	0	logfile
✔	8F6A	28878	2023-11-21	2022-11-16	2.06	3.05	2.14	2.7	0.004	0.69	0.0	0.05	17.55	0.01	2.320	4.08	3.21	3.1	96.9	0.0	1.20	0.80	0.76	4.28	2.7	0.004	0.54	0.0	0.04	16.39	0.00	2.057	2.38	0.63	3.6	96.4	0.0	1.60	0.85	0.81	0.91	4.52	93058	5950	28	0	0	0	47110	logfile
✔	7P6B	13224	2023-11-13	2021-07-15	2.2	1.98	2.14	2.1	0.004	0.75	0.0	0.09	13.80	0.01	2.246	4.21	0.00	3.8	96.2	0.0	-2.60	0.48	0.85	6.24	2.0	0.005	0.67	0.0	0.05	17.01	0.00	2.132	7.10	0.43	4.7	95.3	0.0	-2.28	2.23	0.49	0.88	6.77	4060	540	5	0	0	0	0	logfile
✔	8P5V	17454	2023-11-13	2023-05-24	2.07	2.90	2.14	2.5	0.009	1.09	0.0	0.06	14.19	0.02	2.018	1.82	0.53	2.7	97.3	0.0	0.06	0.90	0.95	6.07	2.6	0.003	0.64	0.0	0.04	14.85	0.00	1.913	3.53	0.58	2.0	98.0	0.0	1.33	0.88	0.86	0.93	5.49	54248	6726	18	0	24	1280	0	logfile
✘	8BQW	16189	2023-11-17	2023-01-18	2.3	2.12	2.14	2.2	0.008	1.14	0.0	0.07	8.96	0.00	0.052	12.77	0.00	9.6	90.4	0.0	-3.78	0.46	0.75	7.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17385	2310	90	0	270	135	0	logfile
✔	7ZYY	15028	2023-11-21	2022-05-25	2.12	2.40	2.14	2.1	0.007	0.89	0.0	0.05	17.24	0.00	2.008	4.42	1.19	2.4	97.6	0.0	-0.65	0.91	0.89	4.75	2.1	0.003	0.57	0.0	0.04	17.11	0.00	1.934	7.74	1.47	2.5	97.5	0.0	0.40	1.08	0.91	0.89	4.79	33924	4224	12	0	28	324	0	logfile
✔	8BC3	15961	2023-11-16	2022-10-14	2.1	2.00	2.14	2.2	0.014	2.07	0.0	0.11	19.40	0.02	2.310	1.34	11.95	3.3	96.7	0.0	-4.28	0.71	0.84	5.67	2.1	0.003	0.55	0.0	0.04	16.36	0.00	2.123	3.91	0.57	0.6	99.4	0.0	1.74	0.51	0.76	0.88	6.23	16880	2170	30	0	10	500	0	logfile
✔	6QJQ	4566	2023-11-13	2019-01-24	3.7	3.99	2.14	4.1	0.021	1.17	0.0	0.11	13.36	0.01	2.499	5.58	0.00	4.0	94.0	2.0	-4.41	0.39	0.75	2.60	4.1	0.005	0.77	0.0	0.05	14.41	0.00	2.276	11.56	0.00	6.0	94.0	0.0	-2.81	1.25	0.37	0.75	2.23	1218	162	6	0	0	0	0	logfile
✔	8iRU	35686	2023-11-17	2023-03-19	3.2	3.42	2.15	3.3	0.013	1.78	5.0	0.10	13.09	0.02	2.528	0.83	0.00	3.4	96.6	0.0	-0.54	0.66	0.76	3.92	3.3	0.004	0.60	0.0	0.04	15.09	0.00	1.903	10.19	0.21	3.3	96.7	0.0	0.95	0.98	0.67	0.81	2.84	17655	1123	5	0	10	0	8649	logfile
✘	7o6E	12738	2023-11-21	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.49	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	35304	4248	48	0	0	1392	0	logfile
✘	7YPQ	34011	2023-11-13	2022-08-04	3.1	3.22	2.15	3.2	0.005	0.63	0.0	0.05	17.29	0.00	2.261	7.93	0.00	2.2	97.8	0.0	-0.66	0.52	0.79	2.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2915	327	2	11	0	0	0	logfile
✔	8FNV	29327	2023-11-18	2022-12-28	2.11	2.24	2.15	2.2	0.007	1.36	12.0	0.07	18.52	0.02	2.014	8.59	3.84	5.7	93.5	0.8	0.03	0.71	0.82	3.84	2.2	0.003	0.62	0.0	0.04	18.06	0.00	2.067	8.88	1.54	5.2	94.2	0.5	1.28	0.48	0.74	0.87	4.18	74928	9237	24	0	12	0	0	logfile
✔	8GHE	40042	2023-11-18	2023-03-09	2.05	2.65	2.15	2.5	0.006	0.73	0.0	0.05	12.12	0.01	2.229	4.10	0.04	1.7	98.3	0.0	-0.85	0.83	0.91	5.79	2.4	0.003	0.58	0.0	0.04	14.50	0.00	2.155	9.80	0.92	1.4	98.6	0.0	1.63	0.46	0.82	0.91	5.44	22193	2648	12	0	5	830	0	logfile
✔	7YNP	33968	2023-11-13	2022-07-31	2.8	2.38	2.15	3.4	0.012	0.97	0.0	0.06	13.69	0.00	2.265	10.48	0.00	6.5	93.5	0.0	-3.88	0.39	0.78	4.28	3.5	0.005	0.54	0.0	0.05	14.75	0.00	2.231	7.81	2.71	5.4	94.6	0.0	-2.18	1.78	0.34	0.80	4.85	2568	366	8	0	2	0	0	logfile
✔	7SCA	25031	2023-11-14	2021-09-27	2.1	2.23	2.15	2.2	0.011	1.14	7.0	0.07	15.33	0.01	2.057	5.44	0.78	1.0	99.0	0.0	2.17	0.79	0.85	5.74	2.2	0.002	0.55	0.0	0.04	16.60	0.00	2.121	8.28	0.87	0.9	99.1	0.0	2.87	1.09	0.79	0.85	5.28	55437	6836	116	0	54	1325	0	logfile

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