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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6UVA | 20906 | 2022-12-12 | 2019-11-01 | 2.3 | 2.12 | 2.31 | 2.2 | 0.002 | 0.55 | 0.0 | 0.04 | 18.04 | 0.00 | 2.207 | 6.97 | 3.36 | 3.2 | 96.8 | 0.0 | -2.29 | 0.63 | 0.72 | 2.83 | 2.3 | 0.003 | 0.59 | 0.0 | 0.04 | 18.45 | 0.00 | 2.147 | 8.77 | 3.45 | 4.2 | 95.8 | 0.0 | 0.29 | 1.31 | 0.65 | 0.78 | 2.85 | 9561 | 1199 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7UZU | 26918 | 2022-12-11 | 2022-05-09 | 2.3 | 2.23 | 2.31 | 2.2 | 0.003 | 0.57 | 0.0 | 0.04 | 17.47 | 0.01 | 2.124 | 3.96 | 0.52 | 3.1 | 96.9 | 0.0 | 1.73 | 0.60 | 0.87 | 5.53 | 2.2 | 0.002 | 0.48 | 0.0 | 0.03 | 17.63 | 0.00 | 2.121 | 4.92 | 1.03 | 3.5 | 96.5 | 0.0 | 2.86 | 0.19 | 0.58 | 0.87 | 5.61 | 7399 | 483 | 4 | 0 | 0 | 79 | 3655 | logfile |
✘ | 7ZQC | 14870 | 2022-12-19 | 2022-04-29 | 2.31 | 2.33 | 2.31 | 2.4 | 0.019 | 1.56 | 0.0 | 0.05 | 16.31 | 0.02 | 1.198 | 3.34 | 0.24 | 2.0 | 98.0 | 0.0 | 1.78 | 0.76 | 0.88 | 6.04 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 82030 | 4165 | 39 | 0 | 351 | 621 | 31531 | logfile |
✔ | 7Q3L | 13793 | 2022-12-14 | 2021-10-28 | 2.21 | 2.93 | 2.31 | 2.6 | 0.008 | 1.50 | 26.0 | 0.12 | 15.22 | 0.01 | 1.876 | 3.08 | 2.50 | 3.2 | 96.8 | 0.0 | -1.25 | 0.81 | 0.86 | 3.75 | 2.6 | 0.004 | 0.69 | 0.0 | 0.04 | 16.13 | 0.00 | 2.019 | 9.06 | 1.13 | 2.5 | 97.5 | 0.0 | 1.18 | 1.02 | 0.80 | 0.87 | 3.45 | 20470 | 2440 | 16 | 41 | 4 | 180 | 0 | logfile |
✔ | 6PXM | 20521 | 2022-12-18 | 2019-07-26 | 2.1 | 2.33 | 2.32 | 2.4 | 0.008 | 0.71 | 0.0 | 0.04 | 16.03 | 0.00 | 2.392 | 1.60 | 0.00 | 0.6 | 99.4 | 0.0 | -3.44 | 0.79 | 0.89 | 5.35 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 32736 | 4080 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QJP | 4565 | 2022-12-11 | 2019-01-24 | 3.5 | 3.64 | 2.32 | 4.1 | 0.009 | 1.01 | 0.0 | 0.07 | 9.52 | 0.01 | 2.605 | 1.16 | 0.00 | 3.2 | 96.8 | 0.0 | -2.50 | 0.37 | 0.74 | 3.05 | 4.2 | 0.003 | 0.70 | 0.0 | 0.05 | 12.40 | 0.00 | 2.347 | 10.42 | 0.00 | 1.1 | 98.9 | 0.0 | -3.47 | 1.59 | 0.32 | 0.72 | 4.10 | 816 | 105 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7P5H | 13199 | 2022-12-15 | 2021-07-14 | 2.3 | 2.03 | 2.33 | 2.1 | 0.004 | 0.62 | 0.0 | 0.04 | 18.38 | 0.01 | 1.894 | 10.02 | 2.38 | 3.6 | 96.4 | 0.0 | 0.35 | 0.64 | 0.77 | 4.46 | 2.2 | 0.004 | 0.60 | 0.0 | 0.04 | 18.40 | 0.00 | 1.880 | 9.44 | 2.61 | 3.4 | 96.6 | 0.0 | 0.18 | 0.32 | 0.66 | 0.83 | 4.38 | 80392 | 5060 | 36 | 0 | 40 | 640 | 39924 | logfile |
✔ | 7XMU | 33305 | 2022-12-13 | 2022-04-26 | 2.3 | 2.51 | 2.33 | 2.5 | 0.016 | 0.97 | 0.0 | 0.05 | 17.31 | 0.04 | 1.897 | 4.43 | 1.57 | 2.6 | 97.4 | 0.0 | -0.10 | 0.75 | 0.87 | 4.86 | 2.5 | 0.003 | 1.42 | 0.0 | 0.05 | 16.62 | 0.00 | 1.888 | 4.38 | 0.85 | 2.9 | 97.1 | 0.0 | 0.06 | 1.10 | 0.77 | 0.89 | 4.70 | 15294 | 1842 | 18 | 0 | 36 | 822 | 0 | logfile |
✔ | 7ZZ5 | 15035 | 2022-12-11 | 2022-05-25 | 2.43 | 2.83 | 2.33 | 2.1 | 0.008 | 1.04 | 0.0 | 0.05 | 17.33 | 0.01 | 2.256 | 5.11 | 1.86 | 3.3 | 96.7 | 0.0 | -1.00 | 0.89 | 0.88 | 3.98 | 2.1 | 0.004 | 0.63 | 0.0 | 0.04 | 17.09 | 0.00 | 2.177 | 10.50 | 1.86 | 3.5 | 96.5 | 0.0 | 0.34 | 0.32 | 0.89 | 0.89 | 3.89 | 3633 | 461 | 1 | 0 | 2 | 0 | 0 | logfile |
✔ | 7X7M | 33041 | 2022-12-14 | 2022-03-09 | 2.33 | 2.38 | 2.34 | 2.3 | 0.007 | 0.72 | 13.0 | 0.05 | 17.99 | 0.01 | 2.256 | 5.18 | 2.56 | 2.6 | 97.4 | 0.0 | 2.72 | 0.78 | 0.86 | 3.51 | 2.3 | 0.006 | 0.74 | 45.0 | 0.05 | 18.49 | 0.01 | 2.186 | 4.99 | 3.29 | 2.6 | 97.4 | 0.0 | 1.93 | 0.52 | 0.80 | 0.89 | 3.55 | 70620 | 9240 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 8A57 | 15161 | 2022-12-16 | 2022-06-14 | 2.3 | 1.87 | 2.34 | 2.1 | 0.011 | 1.72 | 2.0 | 0.12 | 15.42 | 0.02 | 1.972 | 3.37 | 2.49 | 7.1 | 91.7 | 1.2 | -3.32 | 0.61 | 0.75 | 3.99 | 2.0 | 0.005 | 0.81 | 0.0 | 0.04 | 16.08 | 0.01 | 1.803 | 9.66 | 3.44 | 5.0 | 94.9 | 0.1 | -1.05 | 1.28 | 0.68 | 0.77 | 3.91 | 92760 | 3527 | 39 | 3022 | 167 | 0 | 0 | logfile |
✔ | 7R06 | 14220 | 2022-12-12 | 2022-02-01 | 2.27 | 2.36 | 2.34 | 2.3 | 0.007 | 0.85 | 6.0 | 0.06 | 20.28 | 0.01 | 2.153 | 12.63 | 5.53 | 1.2 | 98.6 | 0.2 | 0.06 | 0.74 | 0.80 | 4.13 | 2.3 | 0.005 | 0.61 | 0.0 | 0.05 | 19.52 | 0.00 | 2.173 | 6.85 | 2.64 | 1.5 | 98.4 | 0.2 | 0.76 | 0.52 | 0.77 | 0.85 | 4.61 | 31320 | 3588 | 12 | 66 | 0 | 0 | 0 | logfile |
✔ | 7QK3 | 14030 | 2022-12-11 | 2021-12-17 | 2.44 | 2.73 | 2.35 | 2.7 | 0.010 | 2.07 | 0.0 | 0.11 | 12.55 | 0.01 | 2.519 | 0.00 | 0.00 | 3.4 | 96.6 | 0.0 | -3.04 | 0.38 | 0.77 | 5.65 | 2.7 | 0.003 | 0.73 | 0.0 | 0.05 | 16.22 | 0.00 | 2.309 | 3.65 | 1.28 | 4.0 | 96.0 | 0.0 | -2.83 | 1.47 | 0.40 | 0.82 | 5.18 | 2742 | 183 | 3 | 0 | 0 | 0 | 1407 | logfile |
✔ | 7UZ3 | 26874 | 2022-12-14 | 2022-05-08 | 2.35 | 2.21 | 2.35 | 2.2 | 0.005 | 0.80 | 0.0 | 0.08 | 17.01 | 0.01 | 2.063 | 2.97 | 0.84 | 2.2 | 97.8 | 0.0 | 1.74 | 0.62 | 0.87 | 5.34 | 2.2 | 0.003 | 0.52 | 0.0 | 0.04 | 16.37 | 0.00 | 2.143 | 6.43 | 0.63 | 1.6 | 98.4 | 0.0 | 1.94 | 0.28 | 0.63 | 0.87 | 5.18 | 18415 | 1114 | 10 | 0 | 20 | 153 | 9100 | logfile |
✔ | 7XKD | 33248 | 2022-12-13 | 2022-04-19 | 2.4 | 3.28 | 2.35 | 3.0 | 0.007 | 0.68 | 0.0 | 0.05 | 15.16 | 0.01 | 1.832 | 14.53 | 0.94 | 4.4 | 95.6 | 0.0 | 0.77 | 0.72 | 0.82 | 3.01 | 3.0 | 0.003 | 0.63 | 0.0 | 0.04 | 16.46 | 0.00 | 2.196 | 9.35 | 1.77 | 4.1 | 95.9 | 0.0 | 0.74 | 1.16 | 0.74 | 0.86 | 2.77 | 7962 | 1008 | 5 | 0 | 1 | 1 | 0 | logfile |
✔ | 7XKF | 33250 | 2022-12-13 | 2022-04-19 | 2.4 | 3.28 | 2.35 | 3.0 | 0.007 | 0.68 | 0.0 | 0.05 | 15.16 | 0.01 | 2.055 | 14.97 | 1.06 | 4.4 | 95.6 | 0.0 | 0.77 | 0.72 | 0.82 | 3.01 | 3.0 | 0.003 | 0.63 | 0.0 | 0.04 | 16.34 | 0.00 | 2.192 | 9.86 | 2.71 | 3.9 | 96.1 | 0.0 | 0.62 | 0.46 | 0.73 | 0.85 | 2.88 | 7961 | 1008 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 6SDZ | 10150 | 2022-12-11 | 2019-07-29 | 2.97 | 3.77 | 2.35 | 3.5 | 0.009 | 1.13 | 0.0 | 0.08 | 12.17 | 0.01 | 2.263 | 27.39 | 0.12 | 5.5 | 94.5 | 0.0 | -3.05 | 0.89 | 0.88 | 3.72 | 3.4 | 0.006 | 1.17 | 0.0 | 0.06 | 15.87 | 0.01 | 2.216 | 29.23 | 2.80 | 7.0 | 93.0 | 0.0 | -3.26 | 1.94 | 0.85 | 0.85 | 3.88 | 7909 | 1012 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 8DCP | 27327 | 2022-12-12 | 2022-06-17 | 2.41 | 2.31 | 2.35 | 2.3 | 0.003 | 0.64 | 0.0 | 0.04 | 20.07 | 0.00 | 2.253 | 7.38 | 3.06 | 4.3 | 95.7 | 0.0 | 0.79 | 0.68 | 0.82 | 3.67 | 2.3 | 0.003 | 0.62 | 0.0 | 0.04 | 20.11 | 0.00 | 2.270 | 8.99 | 3.40 | 4.5 | 95.5 | 0.0 | 1.06 | 0.22 | 0.70 | 0.84 | 3.45 | 10595 | 1281 | 4 | 0 | 0 | 21 | 0 | logfile |
✔ | 7SSS | 25413 | 2022-12-13 | 2021-11-11 | 2.4 | 2.00 | 2.36 | 2.4 | 0.006 | 0.66 | 0.0 | 0.04 | 14.29 | 0.02 | 2.323 | 3.97 | 0.00 | 2.4 | 97.6 | 0.0 | 0.01 | 0.59 | 0.78 | 4.08 | 2.4 | 0.005 | 0.72 | 0.0 | 0.04 | 18.06 | 0.01 | 2.116 | 10.70 | 2.24 | 3.7 | 96.3 | 0.0 | 1.89 | 0.58 | 0.61 | 0.79 | 3.56 | 12190 | 1416 | 24 | 0 | 38 | 170 | 0 | logfile |
✔ | 7oEU | 12864 | 2022-12-12 | 2021-05-04 | 2.64 | 2.72 | 2.36 | 2.7 | 0.004 | 0.65 | 0.0 | 0.05 | 14.41 | 0.00 | 2.232 | 6.58 | 0.00 | 3.0 | 97.0 | 0.0 | 0.20 | 0.61 | 0.82 | 4.60 | 2.7 | 0.003 | 0.57 | 0.0 | 0.04 | 17.19 | 0.00 | 2.233 | 5.77 | 1.59 | 3.5 | 96.5 | 0.0 | 1.30 | 0.88 | 0.64 | 0.85 | 3.76 | 10465 | 1375 | 10 | 0 | 0 | 0 | 0 | logfile |