Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6SZU	10354	2023-04-23	2019-10-02	2.41	2.49	2.44	2.5	0.008	0.82	0.0	0.05	15.38	0.01	2.013	3.04	5.28	4.2	95.7	0.1	-2.10	0.71	0.88	5.00	2.5	0.003	0.56	0.0	0.04	16.84	0.00	1.885	6.12	1.78	2.4	97.6	0.0	0.62	0.50	0.72	0.90	4.60	15245	1699	14	54	8	311	0	logfile
✔	7UZV	26919	2023-04-21	2022-05-09	2.5	2.29	2.44	2.3	0.003	0.58	0.0	0.04	19.05	0.00	1.944	3.69	2.84	1.4	98.3	0.3	1.78	0.62	0.84	3.61	2.3	0.002	0.54	0.0	0.04	19.13	0.00	1.943	5.32	3.25	1.6	98.3	0.2	1.37	0.25	0.61	0.85	3.77	9274	584	4	0	0	63	4592	logfile
✔	7ZH1	14717	2023-04-27	2022-04-05	2.48	2.28	2.44	2.3	0.007	1.14	0.0	0.07	16.66	0.02	2.120	5.11	2.38	4.3	95.2	0.5	-0.18	0.71	0.79	3.85	2.3	0.005	0.78	0.0	0.05	17.05	0.01	2.194	3.50	2.19	4.9	95.1	0.1	-0.60	0.52	0.74	0.84	4.34	24501	3060	9	0	39	0	0	logfile
✔	8DBN	27291	2023-04-23	2022-06-14	2.4	2.39	2.44	2.5	0.012	1.14	0.0	0.05	18.88	0.04	2.177	9.85	3.24	4.3	95.7	0.0	0.86	0.49	0.58	1.69	2.5	0.004	1.34	0.0	0.05	18.28	0.00	1.844	12.39	2.53	4.1	95.9	0.0	-0.29	1.17	0.58	0.67	2.51	14244	1824	12	0	24	0	0	logfile
✔	7TBG	25798	2023-04-28	2021-12-22	2.5	2.10	2.44	1.8	0.006	0.76	0.0	0.05	13.03	0.01	2.268	1.89	0.57	3.2	96.8	0.0	0.60	0.75	0.79	4.65	1.8	0.005	0.59	0.0	0.04	16.05	0.00	2.102	5.00	1.23	2.0	98.0	0.0	2.29	1.13	0.77	0.82	3.61	19679	1190	6	0	5	20	9858	logfile
✘	7ZL1	14774	2023-04-28	2022-04-13	2.5	2.06	2.45	2.4	0.007	0.88	0.0	0.06	14.64	0.01	2.033	2.59	0.65	5.7	93.3	1.0	-0.02	0.73	0.86	6.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27257	1720	24	0	8	379	13574	logfile
✔	7TVi	26141	2023-04-23	2022-02-04	3.2	3.59	2.45	3.5	0.005	0.82	0.0	0.05	14.00	0.01	2.228	5.20	0.07	2.6	97.4	0.0	-0.83	0.67	0.67	0.72	3.5	0.003	0.71	0.0	0.04	16.32	0.00	2.191	8.80	0.46	2.2	97.8	0.0	-0.19	1.50	0.74	0.79	1.98	13746	1687	10	0	6	0	0	logfile
✔	8E2F	27834	2023-04-22	2022-08-15	2.47	2.75	2.45	2.7	0.003	0.62	0.0	0.04	16.35	0.00	2.040	6.66	1.58	3.0	97.0	0.0	1.05	0.58	0.82	4.21	2.7	0.004	0.57	0.0	0.04	16.59	0.00	1.823	6.66	1.73	2.7	97.3	0.0	1.68	0.37	0.61	0.84	3.95	12305	771	1	0	0	0	6207	logfile
✔	7V0Q	26948	2023-04-20	2022-05-10	2.5	2.22	2.45	2.2	0.004	0.61	0.0	0.04	18.36	0.00	2.227	3.48	2.15	1.1	98.9	0.0	1.64	0.60	0.89	5.35	2.2	0.003	0.57	0.0	0.04	18.66	0.00	2.150	4.54	2.86	1.2	98.8	0.0	1.61	0.49	0.59	0.89	5.64	5301	658	1	0	0	127	0	logfile
✔	8DM4	27526	2023-04-20	2022-07-08	2.45	2.88	2.45	2.8	0.006	0.90	0.0	0.06	13.13	0.01	2.259	4.06	0.23	4.1	95.9	0.0	-0.05	0.69	0.81	4.67	2.9	0.003	0.60	0.0	0.04	15.96	0.00	2.258	9.27	1.83	3.7	96.3	0.0	0.36	1.53	0.67	0.82	5.08	4018	497	5	0	6	0	0	logfile
✔	7ZH3	14720	2023-04-20	2022-04-05	2.5	2.66	2.45	2.7	0.010	0.84	0.0	0.06	13.33	0.01	2.209	7.02	0.00	3.8	96.2	0.0	-1.40	0.59	0.87	4.43	2.7	0.004	0.55	0.0	0.04	16.22	0.00	2.265	6.87	0.80	2.0	98.0	0.0	1.15	1.11	0.55	0.86	3.86	3301	407	4	0	1	38	0	logfile
✔	7S8L	24896	2023-04-20	2021-09-18	2.45	2.08	2.46	1.7	0.003	0.56	0.0	0.04	12.22	0.00	2.238	2.45	0.00	3.5	96.5	0.0	1.27	0.81	0.80	4.28	1.6	0.003	0.61	0.0	0.04	15.52	0.00	2.231	3.14	1.70	3.2	96.8	0.0	1.39	0.34	0.84	0.84	3.79	8177	1096	6	0	0	0	0	logfile
✔	7Ki1	22883	2023-04-21	2020-10-22	2.5	2.57	2.46	2.6	0.008	0.93	0.0	0.06	15.54	0.00	2.257	8.41	0.28	3.5	96.5	0.0	-1.64	0.64	0.81	3.96	2.6	0.004	0.57	0.0	0.04	16.94	0.00	2.134	5.57	1.66	2.1	97.9	0.0	0.97	0.51	0.65	0.85	3.63	10265	1285	11	0	1	73	0	logfile
✔	7ZH4	14721	2023-04-19	2022-04-05	2.49	2.65	2.46	2.6	0.005	0.88	0.0	0.04	14.07	0.00	2.231	4.63	0.00	2.3	97.7	0.0	-0.97	0.56	0.86	4.93	2.6	0.002	0.48	0.0	0.04	16.92	0.00	2.240	5.14	1.51	1.4	98.6	0.0	1.08	2.14	0.52	0.85	3.74	2957	362	4	0	2	39	0	logfile
✔	8CSW	26973	2023-04-20	2022-05-13	2.5	2.22	2.46	2.3	0.007	0.86	0.0	0.06	14.46	0.01	2.219	5.03	2.33	1.2	98.8	0.0	0.83	0.64	0.88	6.02	2.3	0.002	0.52	0.0	0.04	16.70	0.00	2.152	4.25	1.25	1.4	98.6	0.0	1.11	0.50	0.62	0.88	5.56	5332	657	1	0	0	165	0	logfile
✔	6UDJ	20739	2023-04-27	2019-09-19	2.5	2.60	2.46	2.6	0.010	1.16	0.0	0.07	13.98	0.01	2.252	3.11	0.41	4.1	95.8	0.1	-1.93	0.71	0.85	4.78	2.6	0.004	0.68	0.0	0.05	16.32	0.00	2.015	6.64	2.36	3.3	96.7	0.0	-0.07	0.42	0.71	0.86	4.46	26592	3090	72	0	177	45	0	logfile
✔	7WAF	32384	2023-04-27	2021-12-14	2.52	2.97	2.47	2.8	0.003	0.58	0.0	0.05	13.61	0.00	1.339	7.48	0.11	3.7	96.3	0.1	0.15	0.80	0.87	3.60	2.8	0.002	0.52	0.0	0.04	15.40	0.00	1.948	7.32	1.15	3.3	96.6	0.1	0.37	0.91	0.80	0.90	3.30	24842	3226	16	0	20	0	0	logfile
✔	7N4T	24177	2023-04-22	2021-06-04	2.4	3.03	2.47	2.8	0.004	0.90	1.0	0.05	14.86	0.00	2.198	7.06	0.14	6.0	94.0	0.0	0.31	0.81	0.86	4.16	2.8	0.003	0.61	0.0	0.04	16.53	0.00	2.128	7.02	0.87	5.2	94.8	0.0	0.12	1.57	0.74	0.84	3.87	12887	1603	14	0	7	0	0	logfile
✔	8DBM	27290	2023-04-28	2022-06-14	2.4	2.48	2.47	2.5	0.011	0.82	0.0	0.06	16.47	0.00	1.884	7.64	2.67	3.3	96.7	0.0	0.14	0.68	0.82	4.58	2.4	0.003	0.52	0.0	0.05	16.98	0.00	1.939	9.86	2.89	2.8	97.2	0.0	0.68	0.45	0.70	0.86	4.19	28716	3708	36	0	48	24	0	logfile
✔	7XGR	33187	2023-04-20	2022-04-06	2.6	3.38	2.47	3.2	0.004	0.71	0.0	0.04	18.88	0.00	2.259	8.70	2.17	6.3	93.7	0.0	-0.28	0.52	0.75	2.35	3.2	0.002	0.61	0.0	0.03	19.07	0.00	2.203	7.19	1.96	5.8	94.2	0.0	2.24	1.25	0.55	0.83	2.09	4340	546	1	0	0	0	0	logfile

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