Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6UVA	20906	2022-12-12	2019-11-01	2.3	2.12	2.31	2.2	0.002	0.55	0.0	0.04	18.04	0.00	2.207	6.97	3.36	3.2	96.8	0.0	-2.29	0.63	0.72	2.83	2.3	0.003	0.59	0.0	0.04	18.45	0.00	2.147	8.77	3.45	4.2	95.8	0.0	0.29	1.31	0.65	0.78	2.85	9561	1199	7	0	0	0	0	logfile
✔	7UZU	26918	2022-12-11	2022-05-09	2.3	2.23	2.31	2.2	0.003	0.57	0.0	0.04	17.47	0.01	2.124	3.96	0.52	3.1	96.9	0.0	1.73	0.60	0.87	5.53	2.2	0.002	0.48	0.0	0.03	17.63	0.00	2.121	4.92	1.03	3.5	96.5	0.0	2.86	0.19	0.58	0.87	5.61	7399	483	4	0	0	79	3655	logfile
✘	7ZQC	14870	2022-12-19	2022-04-29	2.31	2.33	2.31	2.4	0.019	1.56	0.0	0.05	16.31	0.02	1.198	3.34	0.24	2.0	98.0	0.0	1.78	0.76	0.88	6.04	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	82030	4165	39	0	351	621	31531	logfile
✔	7Q3L	13793	2022-12-14	2021-10-28	2.21	2.93	2.31	2.6	0.008	1.50	26.0	0.12	15.22	0.01	1.876	3.08	2.50	3.2	96.8	0.0	-1.25	0.81	0.86	3.75	2.6	0.004	0.69	0.0	0.04	16.13	0.00	2.019	9.06	1.13	2.5	97.5	0.0	1.18	1.02	0.80	0.87	3.45	20470	2440	16	41	4	180	0	logfile
✔	6PXM	20521	2022-12-18	2019-07-26	2.1	2.33	2.32	2.4	0.008	0.71	0.0	0.04	16.03	0.00	2.392	1.60	0.00	0.6	99.4	0.0	-3.44	0.79	0.89	5.35	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	32736	4080	24	0	0	0	0	logfile
✔	6QJP	4565	2022-12-11	2019-01-24	3.5	3.64	2.32	4.1	0.009	1.01	0.0	0.07	9.52	0.01	2.605	1.16	0.00	3.2	96.8	0.0	-2.50	0.37	0.74	3.05	4.2	0.003	0.70	0.0	0.05	12.40	0.00	2.347	10.42	0.00	1.1	98.9	0.0	-3.47	1.59	0.32	0.72	4.10	816	105	3	0	0	0	0	logfile
✔	7P5H	13199	2022-12-15	2021-07-14	2.3	2.03	2.33	2.1	0.004	0.62	0.0	0.04	18.38	0.01	1.894	10.02	2.38	3.6	96.4	0.0	0.35	0.64	0.77	4.46	2.2	0.004	0.60	0.0	0.04	18.40	0.00	1.880	9.44	2.61	3.4	96.6	0.0	0.18	0.32	0.66	0.83	4.38	80392	5060	36	0	40	640	39924	logfile
✔	7XMU	33305	2022-12-13	2022-04-26	2.3	2.51	2.33	2.5	0.016	0.97	0.0	0.05	17.31	0.04	1.897	4.43	1.57	2.6	97.4	0.0	-0.10	0.75	0.87	4.86	2.5	0.003	1.42	0.0	0.05	16.62	0.00	1.888	4.38	0.85	2.9	97.1	0.0	0.06	1.10	0.77	0.89	4.70	15294	1842	18	0	36	822	0	logfile
✔	7ZZ5	15035	2022-12-11	2022-05-25	2.43	2.83	2.33	2.1	0.008	1.04	0.0	0.05	17.33	0.01	2.256	5.11	1.86	3.3	96.7	0.0	-1.00	0.89	0.88	3.98	2.1	0.004	0.63	0.0	0.04	17.09	0.00	2.177	10.50	1.86	3.5	96.5	0.0	0.34	0.32	0.89	0.89	3.89	3633	461	1	0	2	0	0	logfile
✔	7X7M	33041	2022-12-14	2022-03-09	2.33	2.38	2.34	2.3	0.007	0.72	13.0	0.05	17.99	0.01	2.256	5.18	2.56	2.6	97.4	0.0	2.72	0.78	0.86	3.51	2.3	0.006	0.74	45.0	0.05	18.49	0.01	2.186	4.99	3.29	2.6	97.4	0.0	1.93	0.52	0.80	0.89	3.55	70620	9240	60	0	0	0	0	logfile
✔	8A57	15161	2022-12-16	2022-06-14	2.3	1.87	2.34	2.1	0.011	1.72	2.0	0.12	15.42	0.02	1.972	3.37	2.49	7.1	91.7	1.2	-3.32	0.61	0.75	3.99	2.0	0.005	0.81	0.0	0.04	16.08	0.01	1.803	9.66	3.44	5.0	94.9	0.1	-1.05	1.28	0.68	0.77	3.91	92760	3527	39	3022	167	0	0	logfile
✔	7R06	14220	2022-12-12	2022-02-01	2.27	2.36	2.34	2.3	0.007	0.85	6.0	0.06	20.28	0.01	2.153	12.63	5.53	1.2	98.6	0.2	0.06	0.74	0.80	4.13	2.3	0.005	0.61	0.0	0.05	19.52	0.00	2.173	6.85	2.64	1.5	98.4	0.2	0.76	0.52	0.77	0.85	4.61	31320	3588	12	66	0	0	0	logfile
✔	7QK3	14030	2022-12-11	2021-12-17	2.44	2.73	2.35	2.7	0.010	2.07	0.0	0.11	12.55	0.01	2.519	0.00	0.00	3.4	96.6	0.0	-3.04	0.38	0.77	5.65	2.7	0.003	0.73	0.0	0.05	16.22	0.00	2.309	3.65	1.28	4.0	96.0	0.0	-2.83	1.47	0.40	0.82	5.18	2742	183	3	0	0	0	1407	logfile
✔	7UZ3	26874	2022-12-14	2022-05-08	2.35	2.21	2.35	2.2	0.005	0.80	0.0	0.08	17.01	0.01	2.063	2.97	0.84	2.2	97.8	0.0	1.74	0.62	0.87	5.34	2.2	0.003	0.52	0.0	0.04	16.37	0.00	2.143	6.43	0.63	1.6	98.4	0.0	1.94	0.28	0.63	0.87	5.18	18415	1114	10	0	20	153	9100	logfile
✔	7XKD	33248	2022-12-13	2022-04-19	2.4	3.28	2.35	3.0	0.007	0.68	0.0	0.05	15.16	0.01	1.832	14.53	0.94	4.4	95.6	0.0	0.77	0.72	0.82	3.01	3.0	0.003	0.63	0.0	0.04	16.46	0.00	2.196	9.35	1.77	4.1	95.9	0.0	0.74	1.16	0.74	0.86	2.77	7962	1008	5	0	1	1	0	logfile
✔	7XKF	33250	2022-12-13	2022-04-19	2.4	3.28	2.35	3.0	0.007	0.68	0.0	0.05	15.16	0.01	2.055	14.97	1.06	4.4	95.6	0.0	0.77	0.72	0.82	3.01	3.0	0.003	0.63	0.0	0.04	16.34	0.00	2.192	9.86	2.71	3.9	96.1	0.0	0.62	0.46	0.73	0.85	2.88	7961	1008	5	0	1	0	0	logfile
✔	6SDZ	10150	2022-12-11	2019-07-29	2.97	3.77	2.35	3.5	0.009	1.13	0.0	0.08	12.17	0.01	2.263	27.39	0.12	5.5	94.5	0.0	-3.05	0.89	0.88	3.72	3.4	0.006	1.17	0.0	0.06	15.87	0.01	2.216	29.23	2.80	7.0	93.0	0.0	-3.26	1.94	0.85	0.85	3.88	7909	1012	11	0	0	0	0	logfile
✔	8DCP	27327	2022-12-12	2022-06-17	2.41	2.31	2.35	2.3	0.003	0.64	0.0	0.04	20.07	0.00	2.253	7.38	3.06	4.3	95.7	0.0	0.79	0.68	0.82	3.67	2.3	0.003	0.62	0.0	0.04	20.11	0.00	2.270	8.99	3.40	4.5	95.5	0.0	1.06	0.22	0.70	0.84	3.45	10595	1281	4	0	0	21	0	logfile
✔	7SSS	25413	2022-12-13	2021-11-11	2.4	2.00	2.36	2.4	0.006	0.66	0.0	0.04	14.29	0.02	2.323	3.97	0.00	2.4	97.6	0.0	0.01	0.59	0.78	4.08	2.4	0.005	0.72	0.0	0.04	18.06	0.01	2.116	10.70	2.24	3.7	96.3	0.0	1.89	0.58	0.61	0.79	3.56	12190	1416	24	0	38	170	0	logfile
✔	7oEU	12864	2022-12-12	2021-05-04	2.64	2.72	2.36	2.7	0.004	0.65	0.0	0.05	14.41	0.00	2.232	6.58	0.00	3.0	97.0	0.0	0.20	0.61	0.82	4.60	2.7	0.003	0.57	0.0	0.04	17.19	0.00	2.233	5.77	1.59	3.5	96.5	0.0	1.30	0.88	0.64	0.85	3.76	10465	1375	10	0	0	0	0	logfile

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