Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oF0	12865	2023-08-24	2021-05-04	2.2	3.01	2.23	2.8	0.005	0.59	0.0	0.04	14.90	0.00	1.851	7.32	0.08	2.7	97.3	0.0	1.19	0.86	0.87	3.67	2.8	0.005	0.66	0.0	0.04	16.29	0.01	1.791	10.39	1.47	3.0	97.0	0.0	1.11	0.46	0.85	0.87	3.46	99476	8446	62	1432	64	0	0	logfile
✔	7RTB	24680	2023-08-11	2021-08-12	2.14	2.32	2.23	2.3	0.003	0.57	0.0	0.04	14.48	0.00	2.277	5.37	0.77	1.6	98.4	0.0	-0.80	0.64	0.69	3.38	2.3	0.003	0.59	0.0	0.04	17.07	0.00	2.260	5.43	2.77	2.7	97.3	0.0	1.12	0.68	0.68	0.82	3.99	8972	1169	7	0	0	1	0	logfile
✔	7PK6	13466	2023-08-14	2021-08-25	2.15	2.27	2.23	2.3	0.005	0.60	0.0	0.05	17.06	0.01	1.864	4.25	2.22	2.0	98.0	0.0	1.43	0.73	0.77	4.80	2.2	0.003	0.55	0.0	0.04	17.46	0.00	2.152	6.42	2.12	2.2	97.8	0.0	1.53	0.87	0.78	0.88	4.85	120580	15100	20	0	0	0	0	logfile
✔	7XXF	33501	2023-08-20	2022-05-30	2.24	2.16	2.23	2.2	0.023	2.96	0.0	0.05	21.41	0.02	2.014	7.34	1.31	2.8	97.2	0.0	1.59	0.77	0.88	5.31	2.2	0.003	1.46	0.0	0.04	18.67	0.00	1.986	7.47	1.02	2.8	97.2	0.0	2.26	0.89	0.77	0.90	4.60	29826	3004	120	0	98	538	0	logfile
✔	8P34	17383	2023-08-09	2023-05-17	2.61	2.80	2.24	2.8	0.009	1.32	0.0	0.08	11.05	0.01	2.651	0.69	0.00	5.4	94.6	0.0	-1.84	0.29	0.90	7.34	2.8	0.002	0.50	0.0	0.05	13.21	0.00	2.693	0.69	0.00	4.3	95.7	0.0	-1.63	0.36	0.28	0.88	6.21	711	94	1	0	0	0	0	logfile
✔	7Y7V	33671	2023-08-09	2022-06-22	2.2	2.46	2.24	2.4	0.005	0.73	0.0	0.07	16.30	0.00	2.078	5.73	1.11	3.2	96.8	0.0	0.09	0.71	0.86	4.53	2.4	0.003	0.58	0.0	0.04	15.87	0.00	2.209	4.91	3.54	2.5	97.5	0.0	1.86	0.36	0.69	0.86	3.98	4341	532	1	0	4	58	0	logfile
✔	7oNJ	12996	2023-08-14	2021-05-25	2.3	2.52	2.24	2.5	0.009	0.86	0.0	0.05	18.33	0.00	2.155	8.48	0.47	0.8	99.2	0.0	-0.25	0.76	0.88	5.16	2.5	0.002	0.46	0.0	0.04	18.08	0.00	2.173	8.46	0.61	0.8	99.2	0.0	2.22	1.14	0.75	0.89	4.38	16947	1834	21	0	63	266	0	logfile
✔	7QRU	14124	2023-08-14	2022-01-12	2.24	2.32	2.24	2.4	0.020	2.18	9.0	0.10	14.53	0.02	2.058	6.63	2.50	2.6	97.4	0.1	-1.62	0.79	0.91	4.88	2.4	0.004	0.60	0.0	0.04	15.74	0.00	2.169	5.83	1.43	0.9	99.1	0.0	2.24	1.15	0.79	0.90	4.06	16100	1957	18	0	3	360	0	logfile
✔	7UTD	26767	2023-08-09	2022-04-26	2.19	3.00	2.25	2.5	0.060	2.36	28.0	1.00	15.03	0.02	1.964	8.43	1.36	2.2	97.7	0.1	-0.03	0.71	0.61	3.58	2.6	0.005	1.93	0.0	0.08	15.64	0.00	1.523	16.31	1.27	2.9	97.1	0.0	0.37	1.33	0.88	0.85	3.78	54200	6908	36	0	64	0	0	logfile
✔	8DBG	27283	2023-08-13	2022-06-14	2.2	2.20	2.25	2.2	0.007	0.69	0.0	0.05	15.18	0.00	1.958	4.92	1.97	3.4	96.6	0.0	0.54	0.71	0.86	6.29	2.2	0.002	0.48	0.0	0.05	16.08	0.00	1.996	5.40	2.23	3.3	96.7	0.0	1.17	0.31	0.74	0.90	5.48	14442	1854	18	0	30	12	0	logfile
✔	8EHG	28147	2023-08-11	2022-09-14	2.24	2.24	2.25	2.3	0.003	0.53	0.0	0.04	16.09	0.00	2.291	4.70	1.44	1.5	98.5	0.0	1.13	0.74	0.83	5.20	2.4	0.003	0.55	0.0	0.04	16.76	0.00	2.229	4.04	2.16	1.2	98.8	0.0	1.61	0.20	0.72	0.84	5.39	10472	1372	4	0	0	0	0	logfile
✔	8H3M	34469	2023-08-16	2022-10-09	2.48	2.22	2.25	2.2	0.004	0.65	0.0	0.05	16.02	0.00	2.218	5.84	2.03	3.6	96.1	0.3	-0.03	0.72	0.87	4.26	2.2	0.005	0.65	0.0	0.05	16.41	0.00	2.193	6.37	2.91	4.4	95.4	0.2	0.19	1.11	0.73	0.87	4.37	20936	2662	8	0	22	0	0	logfile
✔	8DLW	27518	2023-08-21	2022-07-08	2.16	3.12	2.26	2.6	0.007	1.05	0.0	0.06	11.12	0.01	2.290	1.95	0.19	2.3	97.7	0.1	0.82	0.87	0.86	4.36	2.6	0.004	0.65	0.0	0.04	13.83	0.00	2.164	6.94	1.06	2.6	97.4	0.0	0.96	2.12	0.88	0.89	4.13	30267	3768	33	0	78	0	0	logfile
✔	6DRV	8908	2023-08-22	2018-06-13	2.2	2.30	2.26	2.3	0.017	1.44	0.0	0.08	12.56	0.02	2.116	3.99	0.23	6.8	91.1	2.1	-1.87	0.59	0.79	5.89	2.3	0.004	0.73	0.0	0.05	16.34	0.00	2.161	6.53	1.28	2.7	97.2	0.0	0.28	1.48	0.74	0.89	5.92	32888	4096	4	0	0	0	0	logfile
✔	7XiB	33201	2023-08-10	2022-04-12	2.23	2.35	2.26	2.4	0.009	0.71	0.0	0.17	18.00	0.01	2.184	6.98	4.14	3.9	96.1	0.0	-1.86	0.65	0.81	5.40	2.4	0.003	0.72	0.0	0.07	18.45	0.00	2.209	6.46	2.71	3.4	96.6	0.0	0.04	0.43	0.65	0.82	4.56	7178	815	6	24	2	196	0	logfile
✔	8DBE	27281	2023-08-13	2022-06-14	2.1	2.18	2.26	2.2	0.014	0.99	0.0	0.05	17.66	0.05	1.867	9.20	3.05	4.1	95.9	0.0	0.97	0.73	0.90	6.43	2.2	0.003	1.76	0.0	0.05	17.32	0.00	1.850	6.81	1.87	2.7	97.3	0.0	0.27	0.34	0.74	0.91	6.36	14982	1896	18	0	30	42	0	logfile
✔	7XTG	33448	2023-08-14	2022-05-17	2.2	2.41	2.26	2.5	0.004	0.76	0.0	0.04	18.28	0.01	2.094	13.57	2.55	4.4	95.4	0.1	-0.48	0.60	0.72	1.71	2.4	0.003	0.63	0.0	0.04	17.43	0.00	2.254	8.13	2.36	3.5	96.3	0.1	2.06	2.09	0.67	0.89	2.88	15435	2034	15	0	3	0	0	logfile
✔	7UKG	26580	2023-08-10	2022-04-01	2.24	2.56	2.27	2.5	0.006	0.58	0.0	0.04	13.16	0.00	2.208	6.08	0.00	1.8	98.2	0.0	2.95	0.68	0.88	4.70	2.5	0.003	0.48	0.0	0.04	13.81	0.00	2.354	5.86	0.22	1.8	98.2	0.0	3.84	0.22	0.70	0.90	4.29	8652	1128	10	0	4	0	0	logfile
✔	8DBH	27284	2023-08-20	2022-06-14	2.2	2.17	2.27	2.1	0.007	0.69	0.0	0.05	15.18	0.00	1.957	4.90	1.94	3.4	96.6	0.0	0.54	0.72	0.85	5.77	2.1	0.002	0.49	0.0	0.05	15.66	0.00	1.961	5.07	1.78	3.7	96.3	0.0	1.16	0.91	0.74	0.90	5.57	28884	3708	36	0	60	24	0	logfile
✔	6L3T	0825	2023-08-16	2019-10-15	2.34	2.41	2.27	2.4	0.010	1.07	0.0	0.05	15.75	0.01	2.306	1.05	3.61	1.0	99.0	0.0	-3.24	0.68	0.86	4.85	2.4	0.002	0.55	0.0	0.03	16.32	0.00	1.992	2.15	1.20	1.1	98.9	0.0	3.02	1.61	0.67	0.87	4.18	19722	1206	18	0	6	204	9588	logfile

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