Table showing results for February 2023

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peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7oTo	13063	2023-02-19	2021-06-10	3.4	2.27	—	1.3	0.013	1.84	0.0	0.11	15.17	0.01	1.799	3.86	0.00	1.5	98.5	0.0	2.59	0.76	0.74	1.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10333	1313	4	0	4	0	0	logfile
✔	7N5D	24186	2023-02-23	2021-06-05	2.8	2.25	—	1.3	0.023	1.52	0.0	0.09	9.91	0.01	2.378	0.32	0.00	1.1	98.9	0.0	1.83	0.84	0.83	4.14	1.3	0.003	0.64	0.0	0.04	16.00	0.00	2.173	6.93	1.62	1.9	98.1	0.0	2.44	0.66	0.82	0.82	3.20	20593	2612	14	0	7	0	0	logfile
✔	7MDW	23782	2023-02-17	2021-04-06	3.58	2.25	3.45	1.5	0.002	0.54	0.0	0.04	12.63	0.00	2.293	8.46	0.00	6.5	93.5	0.0	-1.58	0.52	0.44	1.65	1.5	0.004	0.68	0.0	0.05	14.76	0.00	2.170	17.08	0.28	11.9	88.1	0.0	-3.01	1.34	0.56	0.49	1.78	3392	435	4	0	1	0	0	logfile
✔	7USM	26739	2023-02-20	2022-04-25	2.7	2.25	—	1.5	0.003	0.61	0.0	0.04	12.70	0.01	2.109	6.35	0.00	3.9	96.1	0.0	-0.89	0.72	0.68	2.45	1.6	0.004	0.72	0.0	0.05	16.20	0.00	2.103	9.89	1.60	4.2	95.8	0.0	-0.64	0.47	0.74	0.72	2.37	11893	1521	5	0	15	0	0	logfile
✔	7R40	14250	2023-02-27	2022-02-08	2.9	2.41	2.92	1.5	0.003	0.71	0.0	0.05	13.90	0.01	2.324	4.76	0.00	4.8	95.2	0.0	-2.66	0.68	0.63	1.24	1.6	0.004	0.75	0.0	0.05	16.28	0.00	2.142	15.18	2.53	5.9	94.1	0.0	-1.37	0.70	0.72	0.69	1.57	30615	3840	24	0	51	0	0	logfile
✔	7N5E	24187	2023-02-22	2021-06-05	2.8	2.16	2.68	1.5	0.023	1.54	0.0	0.09	10.26	0.01	2.378	0.36	0.00	1.2	98.8	0.0	1.87	0.80	0.80	4.07	1.9	0.003	0.58	0.0	0.04	16.11	0.00	2.127	6.31	1.10	1.8	98.2	0.0	2.74	0.58	0.78	0.79	3.16	17915	2176	14	0	7	0	0	logfile
✔	7UDS	26458	2023-02-22	2022-03-20	3.1	2.25	3.26	1.5	0.004	0.65	0.0	0.04	13.86	0.00	2.015	10.59	0.00	4.8	95.2	0.0	-0.23	0.73	0.69	2.60	1.5	0.004	0.67	0.0	0.05	15.81	0.00	2.107	10.89	0.22	4.8	95.2	0.0	-0.34	0.28	0.75	0.73	2.28	17032	2094	32	0	53	0	0	logfile
✔	7SiL	25143	2023-02-20	2021-10-14	2.7	1.97	—	1.5	0.004	0.68	0.0	0.05	13.57	0.00	2.160	6.65	0.15	2.1	97.9	0.0	0.60	0.75	0.72	3.10	1.6	0.004	0.60	0.0	0.04	15.99	0.00	2.177	8.17	1.70	3.0	97.0	0.0	0.52	0.39	0.77	0.78	2.92	12924	1564	8	0	34	0	0	logfile
✔	7XJG	33226	2023-02-20	2022-04-17	2.51	2.02	2.63	1.6	0.005	0.71	0.0	0.05	22.26	0.01	1.962	7.64	3.44	4.1	95.9	0.0	-0.23	0.76	0.76	2.80	1.6	0.004	0.57	0.0	0.04	21.98	0.00	2.113	7.40	4.28	3.9	96.1	0.0	0.70	0.25	0.79	0.79	2.46	13167	1066	12	216	2	0	0	logfile
✔	7M4U	23666	2023-02-21	2021-03-22	2.71	1.78	—	1.6	0.006	0.58	2.0	0.04	14.94	0.02	1.771	4.42	0.20	3.1	96.7	0.2	1.08	0.79	0.76	3.70	1.6	0.004	0.76	0.0	0.04	16.09	0.01	1.732	5.99	2.36	3.6	96.2	0.2	0.59	1.72	0.82	0.81	3.40	51764	2386	27	1528	84	191	0	logfile
✔	7UWN	26837	2023-02-19	2022-05-03	3.01	2.26	3.04	1.6	0.004	0.62	0.0	0.04	16.48	0.00	2.105	14.51	2.21	6.1	93.9	0.0	-1.09	0.66	0.63	1.06	1.5	0.003	0.62	0.0	0.04	16.58	0.00	2.124	14.56	0.26	6.0	94.0	0.0	-1.06	0.32	0.66	0.63	0.79	10602	1325	12	0	11	0	0	logfile
✔	7SEP	25074	2023-02-18	2021-10-01	3.8	2.53	3.76	1.6	0.006	0.66	0.0	0.05	12.76	0.01	2.155	10.23	8.22	5.0	95.0	0.0	-0.19	0.72	0.72	2.36	2.0	0.004	0.75	0.0	0.05	17.02	0.01	2.160	15.37	0.72	3.5	96.5	0.0	-0.44	0.96	0.72	0.71	2.13	7641	930	2	0	0	0	0	logfile
✔	8CS9	26960	2023-02-23	2022-05-12	2.74	1.95	—	1.6	0.006	0.84	0.0	0.05	18.24	0.01	2.218	10.19	3.66	2.2	97.5	0.3	0.33	0.82	0.81	3.50	1.6	0.003	0.66	0.0	0.04	17.96	0.00	2.134	8.25	2.63	1.9	98.1	0.0	1.54	0.38	0.83	0.83	3.46	60944	7677	39	0	27	268	0	logfile
✔	7SiM	25144	2023-02-20	2021-10-14	2.7	2.00	—	1.6	0.005	0.69	0.0	0.05	13.44	0.00	2.302	7.90	0.07	1.7	98.3	0.0	0.36	0.74	0.72	3.19	1.7	0.003	0.53	0.0	0.04	15.81	0.00	2.187	8.61	1.11	1.6	98.4	0.0	0.58	0.93	0.76	0.78	3.17	12826	1564	8	0	28	0	0	logfile
✔	7UAF	26423	2023-02-22	2022-03-12	2.4	2.07	3.04	1.6	0.012	1.80	13.0	0.10	13.79	0.02	1.783	1.19	0.16	3.1	96.9	0.0	-0.18	0.80	0.80	5.45	1.6	0.003	0.60	0.0	0.04	17.00	0.00	1.994	6.71	2.16	3.6	96.4	0.0	0.15	1.19	0.83	0.83	4.11	17864	2131	22	0	58	0	0	logfile
✔	7S8L	24896	2023-02-18	2021-09-18	2.45	2.08	2.46	1.7	0.003	0.56	0.0	0.04	12.22	0.00	2.238	2.45	0.00	3.5	96.5	0.0	1.27	0.81	0.80	4.28	1.6	0.003	0.61	0.0	0.04	15.52	0.00	2.231	3.14	1.70	3.2	96.8	0.0	1.39	0.34	0.84	0.84	3.79	8177	1096	6	0	0	0	0	logfile
✔	7S3H	24823	2023-02-19	2021-09-06	2.5	2.10	2.54	1.7	0.009	1.08	0.0	0.05	16.86	0.01	2.234	3.77	0.11	3.7	96.3	0.0	-1.50	0.75	0.71	1.79	1.7	0.003	0.64	0.0	0.04	18.76	0.00	2.130	12.44	1.96	2.8	97.2	0.0	-0.10	0.74	0.78	0.76	1.99	9966	1030	4	75	1	0	0	logfile
✘	7P13	13154	2023-02-21	2021-07-01	2.29	1.96	2.28	1.7	0.016	1.06	0.0	0.07	14.07	0.01	2.430	5.24	0.00	3.3	96.7	0.0	2.06	0.82	0.87	4.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13727	1743	7	0	0	0	154	logfile
✔	8AG4	15415	2023-02-20	2022-07-19	2.46	2.04	2.48	1.7	0.003	0.49	0.0	0.04	13.59	0.00	2.170	5.34	0.00	3.9	96.1	0.0	0.77	0.82	0.83	4.04	1.7	0.003	0.50	0.0	0.04	15.81	0.00	2.166	5.88	0.87	3.4	96.6	0.0	0.91	0.31	0.81	0.83	3.66	11155	1384	4	0	0	0	0	logfile
✔	7oUG	13076	2023-02-21	2021-06-11	3.1	2.33	3.12	1.7	0.004	0.74	0.0	0.04	17.59	0.01	1.769	5.66	0.14	2.4	97.6	0.0	0.28	0.78	0.75	2.41	1.7	0.003	0.66	0.0	0.04	19.44	0.00	1.919	9.41	0.48	2.1	97.9	0.0	0.04	0.63	0.78	0.79	2.36	15090	1664	16	80	10	8	0	logfile

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