Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7A6A	11668	2023-07-14	2020-08-25	1.15	1.13	—	1.2	0.018	1.70	24.0	0.16	14.68	0.01	1.857	3.78	3.03	1.2	98.8	0.0	2.45	0.47	0.61	9.02	1.2	0.003	0.59	0.0	0.04	15.31	0.00	2.163	2.66	1.82	1.8	98.2	0.0	4.55	0.44	0.69	0.82	8.90	41613	4152	72	0	32	4621	0	logfile
✔	7N5D	24186	2023-07-10	2021-06-05	2.8	2.25	—	1.3	0.023	1.52	0.0	0.09	9.91	0.01	2.378	0.32	0.00	1.1	98.9	0.0	1.83	0.84	0.83	4.14	1.3	0.003	0.64	0.0	0.04	16.00	0.00	2.173	6.93	1.62	1.9	98.1	0.0	2.44	0.66	0.82	0.82	3.20	20593	2612	14	0	7	0	0	logfile
✘	7oTo	13063	2023-07-05	2021-06-10	3.4	2.27	—	1.3	0.013	1.84	0.0	0.11	15.17	0.01	1.799	3.86	0.00	1.5	98.5	0.0	2.59	0.76	0.74	1.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10333	1313	4	0	4	0	0	logfile
✔	7K3V	22657	2023-07-17	2020-09-14	1.34	1.44	—	1.4	0.005	0.79	0.0	0.04	21.25	0.00	0.211	2.71	0.00	1.2	98.8	0.0	3.60	0.69	0.78	8.90	1.4	0.005	0.79	0.0	0.05	14.91	0.01	1.971	1.78	0.00	1.2	98.8	0.0	3.72	0.35	0.73	0.83	8.91	38406	4128	72	0	334	2672	0	logfile
✔	7T2G	25612	2023-07-04	2021-12-04	2.5	1.71	—	1.4	0.009	1.14	0.0	0.05	12.09	0.01	2.214	13.39	1.00	3.5	96.5	0.0	0.61	0.80	0.81	5.15	1.4	0.004	0.81	0.0	0.04	15.33	0.00	2.126	11.11	1.57	2.7	97.3	0.0	0.65	0.36	0.80	0.81	4.61	6922	898	4	0	3	8	0	logfile
✔	8CTE	26988	2023-07-17	2022-05-14	2.9	1.86	2.80	1.5	0.003	0.53	1.0	0.04	11.34	0.00	2.214	5.55	2.34	1.6	98.3	0.1	2.02	0.78	0.75	3.53	1.4	0.003	0.54	0.0	0.04	15.01	0.00	2.104	7.16	1.53	1.8	98.1	0.1	1.87	0.57	0.82	0.81	3.91	38844	4984	21	0	16	0	0	logfile
✔	7N5G	24189	2023-07-03	2021-06-05	2.4	2.16	2.42	1.5	0.022	1.51	0.0	0.09	10.57	0.01	2.386	0.17	0.00	0.8	99.2	0.0	1.84	0.40	0.79	3.64	1.5	0.003	0.57	0.0	0.04	16.52	0.00	2.220	4.78	2.61	1.4	98.6	0.0	2.92	1.20	0.39	0.80	2.57	2926	371	1	0	1	0	0	logfile
✔	7USM	26739	2023-07-06	2022-04-25	2.7	2.25	—	1.5	0.003	0.63	0.0	0.04	12.76	0.01	2.109	6.35	0.00	3.9	96.1	0.0	-0.89	0.72	0.68	2.45	1.6	0.003	0.69	0.0	0.04	16.30	0.00	2.109	9.21	1.75	3.8	96.2	0.0	-0.43	0.48	0.73	0.72	2.18	11893	1521	5	0	15	0	0	logfile
✔	7SiL	25143	2023-07-06	2021-10-14	2.7	1.97	—	1.5	0.004	0.70	0.0	0.05	13.66	0.00	2.160	6.65	0.15	2.1	97.9	0.0	0.60	0.75	0.72	3.10	1.6	0.003	0.58	0.0	0.04	16.10	0.00	2.167	8.36	1.77	2.8	97.2	0.0	0.57	0.39	0.77	0.78	2.87	12924	1564	8	0	34	0	0	logfile
✔	7UDS	26458	2023-07-08	2022-03-20	3.1	2.25	3.26	1.5	0.005	0.74	0.0	0.05	13.46	0.00	2.015	10.59	0.00	4.8	95.2	0.0	-0.23	0.73	0.69	2.60	1.5	0.004	0.71	0.0	0.05	15.60	0.00	2.095	11.66	0.54	4.8	95.2	0.0	-0.41	1.13	0.75	0.73	2.24	17032	2094	32	0	53	0	0	logfile
✔	7K3W	22658	2023-07-17	2020-09-14	1.36	1.48	—	1.5	0.005	0.76	0.0	0.04	20.58	0.00	1.934	3.30	0.00	1.8	98.2	0.0	3.35	0.73	0.80	9.05	1.5	0.004	0.67	0.0	0.04	14.88	0.00	2.032	2.26	0.00	1.8	98.2	0.0	4.02	0.24	0.75	0.82	9.16	39086	4128	72	0	382	2680	0	logfile
✔	7M4Y	23670	2023-07-15	2021-03-22	2.5	1.72	—	1.5	0.006	0.58	2.0	0.03	16.28	0.02	1.783	3.47	2.14	2.5	97.3	0.2	1.41	0.77	0.73	3.74	1.5	0.006	0.83	0.0	0.05	16.57	0.01	1.633	4.85	3.93	3.2	96.7	0.1	0.24	0.30	0.79	0.77	3.86	139817	5511	80	4453	200	1044	0	logfile
✔	7N5E	24187	2023-07-08	2021-06-05	2.8	2.16	2.68	1.5	0.023	1.54	0.0	0.09	10.26	0.01	2.378	0.36	0.00	1.2	98.8	0.0	1.87	0.80	0.80	4.07	1.9	0.003	0.58	0.0	0.04	16.11	0.00	2.127	6.31	1.10	1.8	98.2	0.0	2.74	0.58	0.78	0.79	3.16	17915	2176	14	0	7	0	0	logfile
✔	7MDW	23782	2023-07-03	2021-04-06	3.58	2.25	3.45	1.5	0.002	0.55	0.0	0.04	12.65	0.00	2.293	8.46	0.00	6.5	93.5	0.0	-1.58	0.52	0.44	1.65	1.5	0.005	0.79	0.0	0.05	15.12	0.00	2.071	19.80	0.56	13.5	86.5	0.0	-3.45	1.37	0.56	0.50	1.94	3392	435	4	0	1	0	0	logfile
✔	7SiM	25144	2023-07-06	2021-10-14	2.7	2.00	—	1.6	0.005	0.71	0.0	0.05	13.50	0.00	2.302	7.90	0.07	1.7	98.3	0.0	0.36	0.74	0.72	3.19	1.6	0.003	0.55	0.0	0.04	15.84	0.00	2.196	9.00	0.81	1.6	98.4	0.0	0.50	0.93	0.75	0.76	3.23	12826	1564	8	0	28	0	0	logfile
✔	7M4U	23666	2023-07-03	2021-03-22	2.71	1.78	—	1.6	0.006	0.58	2.0	0.04	14.94	0.02	1.771	4.42	0.20	3.1	96.7	0.2	1.08	0.79	0.76	3.70	1.6	0.004	0.76	0.0	0.04	16.09	0.01	1.732	5.99	2.36	3.6	96.2	0.2	0.59	1.72	0.82	0.81	3.40	51764	2386	27	1528	84	191	0	logfile
✔	7M4Z	23671	2023-07-14	2021-03-22	2.92	1.87	—	1.6	0.005	0.54	0.0	0.03	15.14	0.02	1.833	4.61	0.00	3.0	96.9	0.2	1.09	0.77	0.72	2.81	2.5	0.004	0.69	0.0	0.04	16.16	0.01	1.686	6.98	1.94	3.4	96.4	0.2	0.27	0.92	0.80	0.76	2.74	138172	5625	70	4373	190	229	0	logfile
✔	8CPX	16789	2023-07-16	2023-03-03	1.76	1.61	1.78	1.6	0.005	0.80	0.0	0.06	14.97	0.01	2.063	5.37	0.00	1.0	99.0	0.0	2.18	0.75	0.81	8.02	1.7	0.002	0.52	0.0	0.04	15.88	0.00	2.212	2.81	1.31	1.8	98.2	0.0	4.58	0.39	0.78	0.85	7.90	35827	4152	72	0	38	1709	0	logfile
✔	7M4X	23669	2023-07-15	2021-03-22	2.66	1.75	—	1.6	0.006	0.56	0.0	0.03	15.11	0.01	1.789	3.62	0.00	2.5	97.4	0.1	1.32	0.77	0.73	3.46	1.6	0.004	0.72	0.0	0.04	16.10	0.01	1.684	5.41	2.69	3.2	96.7	0.1	0.26	0.35	0.79	0.76	3.35	139446	5528	73	4453	194	552	0	logfile
✔	7SEP	25074	2023-07-04	2021-10-01	3.8	2.53	3.76	1.6	0.006	0.66	0.0	0.05	12.76	0.01	2.155	10.23	8.22	5.0	95.0	0.0	-0.19	0.72	0.72	2.36	2.0	0.004	0.75	0.0	0.05	17.02	0.01	2.160	15.37	0.72	3.5	96.5	0.0	-0.44	0.96	0.72	0.71	2.13	7641	930	2	0	0	0	0	logfile

• Page 1 of 500
• next →