Table showing results for October 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6UVN	20908	2021-10-06	2019-11-03	3.1	2.62	—	2.0	0.010	0.84	1.0	0.05	14.35	0.00	2.114	18.82	0.52	8.1	91.8	0.1	-3.87	0.89	0.81	2.57	2.0	0.004	0.64	0.0	0.04	15.71	0.00	1.906	13.27	0.26	6.2	93.8	0.0	-1.15	0.49	0.90	0.82	2.30	29487	3461	14	61	83	0	0	logfile
✘	7D1U	30548	2021-10-07	2020-09-15	2.08	1.94	2.04	2.0	0.017	1.69	27.0	0.09	18.17	0.02	1.202	3.96	3.09	2.3	97.5	0.2	-1.36	0.74	0.87	6.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52655	5312	106	0	196	2121	0	logfile
✔	7KBB	22788	2021-10-03	2020-10-01	4.02	2.37	4.07	2.0	0.006	1.16	0.0	0.06	14.88	0.01	2.073	14.42	1.58	5.4	94.1	0.5	-1.59	0.57	0.58	—	1.7	0.010	1.22	0.0	0.05	14.74	0.01	2.165	21.55	0.00	8.1	91.9	0.0	-0.95	0.72	0.59	0.60	—	6422	812	7	0	0	0	0	logfile
✔	7EZM	31389	2021-10-03	2021-06-01	2.9	2.20	—	2.0	0.011	1.07	1.0	0.15	13.21	0.01	2.228	4.66	0.94	3.8	96.2	0.0	-0.87	0.76	0.76	3.60	2.0	0.003	0.75	0.0	0.07	16.34	0.00	2.153	10.90	2.51	2.1	97.9	0.0	0.51	0.64	0.78	0.79	2.88	9008	1171	6	0	0	0	0	logfile
✔	7JVR	22511	2021-10-03	2020-08-22	2.8	2.21	—	2.0	0.016	0.95	0.0	0.07	8.77	0.01	2.235	4.64	0.00	2.8	97.2	0.0	-0.85	0.74	0.74	2.70	2.1	0.004	0.76	0.0	0.04	14.53	0.00	2.154	16.07	2.88	2.6	97.4	0.0	0.58	0.71	0.75	0.76	2.33	8872	1126	6	0	1	0	0	logfile
✘	6YBQ	10771	2021-10-06	2020-03-17	1.96	2.06	—	2.0	0.039	1.60	0.0	0.05	15.08	0.01	1.550	4.52	0.00	2.7	97.3	0.0	-1.94	0.82	0.87	6.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	34092	4289	36	0	12	871	0	logfile
✔	6Xi8	22191	2021-10-03	2020-06-19	3.64	2.63	3.78	2.0	0.010	1.69	4.0	0.11	15.71	0.01	1.333	6.38	0.77	9.0	91.0	0.0	-4.62	0.66	0.54	0.71	1.9	0.007	1.32	0.0	0.05	17.23	0.01	2.147	16.52	0.58	8.5	91.5	0.0	-2.39	1.29	0.68	0.63	0.43	5022	636	4	0	2	0	0	logfile
✔	7N1Y	24127	2021-10-05	2021-05-28	4.3	2.48	—	2.0	0.015	2.09	23.0	0.15	15.16	0.01	1.099	10.61	1.91	8.5	90.8	0.6	-2.82	0.78	0.64	—	2.0	0.010	0.89	1.0	0.05	14.51	0.01	2.030	15.83	0.07	6.4	93.6	0.0	-1.58	1.41	0.78	0.64	—	26636	3242	31	0	91	0	0	logfile
✔	7KUE	23036	2021-10-03	2020-11-24	3.5	2.53	3.43	2.0	0.010	1.62	3.0	0.11	15.98	0.01	2.205	5.62	0.78	8.4	91.6	0.0	-4.55	0.71	0.69	2.12	2.0	0.006	1.19	0.0	0.05	17.95	0.01	2.225	16.12	0.58	7.7	92.3	0.0	-2.41	1.06	0.73	0.72	1.76	4726	577	4	0	2	0	0	logfile
✔	6WWS	21946	2021-10-03	2020-05-09	2.7	2.11	2.68	2.0	0.014	1.24	8.0	0.09	16.06	0.02	2.077	8.07	3.06	6.5	93.1	0.3	-3.99	0.59	0.78	4.41	2.0	0.005	0.68	0.0	0.05	17.64	0.00	1.988	6.03	2.11	3.4	96.6	0.0	-0.63	0.63	0.59	0.83	4.23	9696	1216	6	1	4	0	0	logfile
✔	7MiJ	23853	2021-10-05	2021-04-17	1.98	1.95	—	2.0	0.005	1.58	4.0	0.05	21.88	0.01	2.320	3.08	0.18	2.8	97.2	0.0	-3.96	0.75	0.81	5.48	2.0	0.002	0.58	0.0	0.04	18.65	0.00	2.126	5.87	0.92	3.0	97.0	0.0	1.16	1.11	0.77	0.83	4.74	23010	2556	12	0	38	328	0	logfile
✔	5FTK	3296	2021-10-06	2016-01-14	2.4	2.04	—	2.0	0.011	1.39	0.0	0.07	12.31	0.01	2.216	24.37	0.65	6.1	93.5	0.4	-4.37	0.44	0.66	3.22	2.0	0.009	1.03	0.0	0.05	17.61	0.01	2.042	18.27	3.39	8.1	91.8	0.1	-2.04	1.26	0.49	0.70	1.79	34374	4338	18	0	12	96	0	logfile
✔	5FTJ	3295	2021-10-06	2016-01-14	2.3	2.04	—	2.0	0.010	1.35	0.0	0.18	14.83	0.01	1.862	40.24	0.81	5.7	93.3	1.0	-3.32	0.42	0.64	2.67	2.0	0.005	0.87	0.0	0.05	17.87	0.01	2.079	14.43	2.33	6.6	93.3	0.1	-0.60	1.24	0.47	0.68	1.56	34602	4338	18	0	18	120	0	logfile
✔	6YL3	10835	2021-10-11	2020-04-06	1.98	2.04	1.99	2.0	0.067	3.60	246.0	0.36	16.35	0.02	1.877	4.38	2.74	5.3	94.4	0.4	-2.46	0.78	0.83	6.40	2.0	0.004	0.75	0.0	0.05	16.22	0.01	1.769	5.10	1.53	3.9	96.0	0.1	-0.06	0.82	0.81	0.86	7.00	150156	9552	84	0	24	3672	73044	logfile
✔	7N1W	24125	2021-10-05	2021-05-28	3.33	2.63	—	2.0	0.013	1.77	17.0	0.12	13.88	0.01	1.951	6.08	0.81	6.0	93.5	0.5	-1.65	0.82	0.79	3.10	1.9	0.006	0.80	0.0	0.05	16.12	0.00	2.058	14.16	0.95	6.2	93.8	0.0	-0.50	1.59	0.84	0.82	2.31	26810	3257	35	0	95	0	0	logfile
✔	7L1Q	23115	2021-10-05	2020-12-15	3.4	2.29	—	2.0	0.008	1.29	6.0	0.07	14.92	0.01	1.807	2.65	2.54	3.7	96.1	0.2	-0.80	0.72	0.67	1.56	1.6	0.005	0.87	0.0	0.05	18.12	0.01	1.833	17.31	1.09	5.6	94.4	0.0	-0.64	2.09	0.73	0.73	1.73	24204	3118	13	0	13	0	0	logfile
✔	7LVQ	23540	2021-10-03	2021-02-26	2.9	2.12	2.86	2.0	0.026	1.30	1.0	0.10	14.92	0.01	1.920	5.31	0.66	6.4	93.5	0.1	-3.20	0.55	0.77	4.09	2.0	0.003	0.68	0.0	0.05	17.22	0.00	2.019	7.28	1.33	3.0	97.0	0.0	0.13	1.06	0.57	0.81	3.39	9767	1226	6	1	5	0	0	logfile
✔	6WWV	21949	2021-10-03	2020-05-09	3.1	2.37	3.04	2.1	0.013	0.97	1.0	0.07	14.76	0.01	1.934	5.67	0.67	6.0	93.5	0.6	-4.33	0.57	0.78	4.01	3.0	0.004	0.70	0.0	0.05	17.04	0.00	1.971	8.99	0.58	4.8	95.0	0.2	-0.73	1.71	0.59	0.82	3.39	9676	1215	6	1	4	0	0	logfile
✔	6ZJA	11233	2021-10-06	2020-06-28	2.0	2.10	2.09	2.1	0.005	0.86	0.0	0.06	14.30	0.01	1.974	0.60	1.37	4.1	95.9	0.0	-0.40	0.79	0.87	6.97	2.1	0.003	0.63	0.0	0.05	16.04	0.00	1.738	1.33	0.58	4.2	95.8	0.0	0.25	0.39	0.77	0.88	6.69	77951	9684	60	0	36	3191	0	logfile
✔	6WWG	21934	2021-10-04	2020-05-09	2.9	2.24	2.91	2.1	0.012	0.90	0.0	0.07	14.85	0.02	1.969	6.48	2.58	4.7	95.1	0.3	-3.52	0.66	0.80	4.17	2.1	0.006	0.76	0.0	0.05	17.40	0.00	1.882	9.34	2.82	4.0	96.0	0.0	-0.53	0.69	0.69	0.85	3.63	19749	2479	12	2	10	0	0	logfile

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