Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8CPV	16787	2023-08-23	2023-03-03	1.76	1.73	1.80	1.7	0.006	0.91	0.0	0.07	14.41	0.01	2.182	2.58	0.00	1.0	99.0	0.0	2.15	0.78	0.84	8.93	1.7	0.002	0.49	0.0	0.03	14.99	0.00	2.274	3.00	0.00	1.8	98.2	0.0	4.87	1.19	0.81	0.87	8.51	35855	4152	72	0	38	1737	0	logfile
✔	7SX3	25492	2023-08-24	2021-11-22	3.1	2.52	3.30	1.7	0.004	0.66	0.0	0.04	14.42	0.01	2.199	3.25	0.00	2.8	97.2	0.0	0.09	0.73	0.81	2.40	1.8	0.003	0.62	0.0	0.04	16.33	0.00	2.092	6.77	0.19	2.4	97.6	0.0	2.19	0.47	0.74	0.84	1.76	37959	4608	6	0	85	0	0	logfile
✘	7P13	13154	2023-08-13	2021-07-01	2.29	1.96	2.28	1.7	0.016	1.06	0.0	0.07	14.07	0.01	2.430	5.24	0.00	3.3	96.7	0.0	2.06	0.82	0.87	4.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13727	1743	7	0	0	0	154	logfile
✔	8CPS	16784	2023-08-23	2023-03-03	1.82	1.69	1.90	1.7	0.003	0.66	0.0	0.05	15.42	0.01	2.116	2.82	0.00	1.0	99.0	0.0	2.28	0.75	0.81	8.54	1.7	0.003	0.58	0.0	0.04	17.00	0.00	2.154	4.46	0.16	1.2	98.8	0.0	4.78	0.30	0.77	0.83	8.39	36034	4152	72	0	38	1916	0	logfile
✔	7S8L	24896	2023-08-10	2021-09-18	2.45	2.08	2.46	1.7	0.003	0.56	0.0	0.04	12.22	0.00	2.238	2.45	0.00	3.5	96.5	0.0	1.27	0.81	0.80	4.28	1.6	0.003	0.61	0.0	0.04	15.52	0.00	2.231	3.14	1.70	3.2	96.8	0.0	1.39	0.34	0.84	0.84	3.79	8177	1096	6	0	0	0	0	logfile
✔	7MW6	24064	2023-08-23	2021-05-15	3.22	2.55	—	1.7	0.005	0.84	1.0	0.09	12.90	0.01	1.556	11.05	0.13	5.1	94.2	0.7	-1.15	0.80	0.77	2.91	1.7	0.004	0.74	0.0	0.05	14.42	0.01	2.123	11.72	0.19	5.9	93.5	0.6	-0.57	0.44	0.80	0.75	2.80	35247	4446	45	0	87	0	0	logfile
✔	8FKX	29260	2023-08-22	2022-12-21	2.59	2.79	2.72	1.7	0.003	0.55	0.0	0.04	13.14	0.00	1.961	1.77	0.01	1.2	98.8	0.0	1.69	0.79	0.82	3.59	1.6	0.006	0.58	0.0	0.04	14.18	0.00	1.866	5.16	1.15	2.2	97.8	0.0	1.73	1.14	0.80	0.87	3.25	138643	10793	67	2472	65	0	0	logfile
✔	7oUG	13076	2023-08-13	2021-06-11	3.1	2.33	3.12	1.7	0.004	0.74	0.0	0.04	17.59	0.01	1.769	5.66	0.14	2.4	97.6	0.0	0.28	0.78	0.75	2.41	1.7	0.003	0.66	0.0	0.04	19.44	0.00	1.919	9.45	0.48	2.1	97.9	0.0	0.04	0.63	0.78	0.79	2.36	15090	1664	16	80	10	8	0	logfile
✔	8CPW	16788	2023-08-23	2023-03-03	1.79	1.64	1.78	1.7	0.005	0.84	0.0	0.06	14.35	0.01	2.180	3.39	0.63	1.0	99.0	0.0	2.13	0.77	0.83	8.34	1.6	0.004	0.71	0.0	0.04	14.75	0.00	2.215	4.05	0.41	1.2	98.8	0.0	3.93	0.22	0.77	0.85	7.73	36004	4152	72	0	38	1886	0	logfile
✔	7oUF	13075	2023-08-13	2021-06-11	3.0	2.26	3.10	1.7	0.005	0.56	0.0	0.04	17.36	0.00	1.686	6.25	0.14	1.8	98.2	0.0	0.10	0.78	0.75	3.06	1.6	0.003	0.68	0.0	0.04	19.84	0.01	1.946	10.18	1.99	2.3	97.7	0.0	0.00	1.74	0.79	0.80	2.77	15094	1664	16	80	10	12	0	logfile
✔	7PQH	13594	2023-08-25	2021-09-17	3.87	2.74	3.96	1.8	0.004	0.88	0.0	0.05	14.43	0.01	2.083	8.81	0.12	6.2	93.8	0.0	-1.40	0.68	0.67	0.79	1.8	0.003	0.81	0.0	0.04	16.60	0.00	2.107	16.33	0.39	6.7	93.3	0.0	-0.70	0.49	0.68	0.68	0.60	102671	12832	12	0	0	0	0	logfile
✔	7C7S	30301	2023-08-12	2020-05-26	2.9	2.38	—	1.8	0.006	0.78	0.0	0.14	13.43	0.01	2.153	7.86	0.00	3.7	96.3	0.0	-2.62	0.83	0.80	2.82	1.8	0.004	0.72	0.0	0.04	15.80	0.00	2.180	9.32	2.88	4.0	96.0	0.0	-0.18	0.59	0.85	0.83	2.59	10915	1355	4	0	9	0	0	logfile
✔	7FiJ	31599	2023-08-09	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	1.6	0.003	0.71	0.0	0.04	10.87	0.00	2.234	8.95	1.25	10.6	89.4	0.0	-0.78	0.63	0.60	0.54	2.95	3061	561	1	0	0	0	0	logfile
✔	8DWG	27753	2023-08-10	2022-08-01	2.71	2.08	2.72	1.8	0.006	0.64	0.0	0.05	12.61	0.00	2.106	6.68	0.00	4.5	95.5	0.0	-1.14	0.78	0.81	4.92	1.8	0.005	0.63	0.0	0.04	15.14	0.00	2.082	6.68	1.52	5.0	95.0	0.0	0.71	0.32	0.80	0.84	3.67	8350	1101	7	0	1	0	0	logfile
✔	7RPo	24618	2023-08-11	2021-08-03	4.16	2.77	—	1.8	0.003	0.50	0.0	0.04	16.86	0.00	1.759	6.97	1.64	8.5	91.5	0.0	-2.01	0.74	0.71	—	1.8	0.003	0.71	0.0	0.04	18.44	0.00	2.035	12.03	0.10	9.2	90.8	0.0	-2.17	1.73	0.75	0.71	—	10602	1179	9	62	5	0	0	logfile
✔	7N1X	24126	2023-08-19	2021-05-28	4.0	2.34	—	1.8	0.014	1.89	13.0	0.14	14.58	0.01	1.484	9.90	1.97	8.1	91.3	0.6	-2.39	0.80	0.69	—	1.8	0.004	0.81	0.0	0.05	16.30	0.00	2.131	14.61	0.70	4.9	95.1	0.0	-1.19	1.10	0.80	0.69	—	26810	3257	35	0	95	0	0	logfile
✔	7X28	32961	2023-08-24	2022-02-25	2.49	2.72	—	1.8	0.013	1.52	5.0	0.11	13.24	0.00	1.606	7.72	7.98	2.7	97.0	0.2	2.21	0.57	0.40	0.90	1.8	0.003	0.74	0.0	0.04	15.01	0.01	2.099	13.52	2.37	3.6	96.3	0.1	0.04	1.68	0.79	0.72	1.74	31583	4119	7	0	0	0	0	logfile
✔	7UFM	26477	2023-08-23	2022-03-22	3.9	2.97	4.04	1.8	0.009	1.77	14.0	0.08	22.53	0.01	1.075	9.26	24.41	11.0	89.0	0.0	-4.66	0.68	0.65	0.50	1.8	0.004	1.00	0.0	0.05	19.26	0.01	2.050	21.97	0.88	7.9	92.1	0.0	-1.84	1.03	0.69	0.67	0.56	36392	4354	30	72	14	0	0	logfile
✔	8ETW	28601	2023-08-20	2022-10-17	2.64	2.14	2.84	1.8	0.005	0.91	2.0	0.05	18.08	0.01	1.435	5.62	0.09	3.7	96.3	0.0	-1.81	0.81	0.83	2.59	2.0	0.006	0.70	0.0	0.05	18.32	0.00	2.140	7.42	2.82	3.6	96.4	0.0	-0.09	0.91	0.81	0.84	2.77	28666	3656	16	0	6	0	0	logfile
✔	7M3G	23654	2023-08-13	2021-03-18	2.5	2.29	—	1.8	0.007	0.96	0.0	0.06	17.07	0.01	2.281	2.21	0.93	3.0	97.0	0.0	-2.02	0.84	0.85	3.70	1.8	0.004	0.61	0.0	0.04	17.55	0.00	2.167	4.31	2.22	3.7	96.3	0.0	-0.24	0.33	0.85	0.87	3.45	13298	1627	11	0	41	0	0	logfile

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