Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UM6	26598	2023-02-18	2022-04-06	2.79	2.13	2.81	1.9	0.012	0.64	0.0	0.04	11.16	0.00	2.359	2.38	0.12	3.8	96.2	0.0	-0.54	0.82	0.81	4.30	2.0	0.003	0.61	0.0	0.04	14.17	0.00	2.248	4.01	1.81	2.8	97.2	0.0	0.66	0.38	0.83	0.83	3.39	8175	1094	6	0	1	0	0	logfile
✔	7E9H	31032	2023-02-22	2021-03-04	4.0	2.62	—	1.9	0.003	0.48	0.0	0.04	11.36	0.00	2.202	8.04	0.06	2.9	97.1	0.0	-2.83	0.68	0.61	—	1.9	0.003	0.70	0.0	0.04	14.89	0.00	2.095	14.63	0.54	4.7	95.3	0.0	-0.84	2.00	0.72	0.68	—	16847	2309	8	0	0	0	0	logfile
✔	7USL	26738	2023-02-26	2022-04-25	2.7	2.28	—	1.9	0.003	0.59	0.0	0.05	13.61	0.00	2.106	5.30	0.00	3.2	96.8	0.0	-0.47	0.75	0.73	3.51	1.9	0.006	0.75	0.0	0.05	15.80	0.01	2.075	7.74	2.10	4.5	95.5	0.0	-0.79	0.38	0.77	0.77	3.11	19065	2464	10	0	49	0	0	logfile
✔	7XBK	33104	2023-02-25	2022-03-21	3.7	2.43	3.78	1.9	0.005	0.86	0.0	0.05	15.01	0.01	2.095	5.74	0.00	2.9	97.0	0.0	-1.71	0.69	0.63	1.49	1.9	0.004	0.74	0.0	0.05	17.64	0.00	1.818	17.19	0.59	2.4	97.6	0.0	0.15	0.72	0.69	0.69	1.64	25745	3139	19	0	33	0	0	logfile
✔	8E9W	27966	2023-02-18	2022-08-27	2.69	2.11	2.70	1.9	0.004	0.67	0.0	0.04	12.89	0.00	2.210	7.31	0.11	2.9	97.1	0.0	0.23	0.78	0.78	3.54	1.9	0.003	0.54	0.0	0.04	15.58	0.00	2.160	7.61	1.60	2.8	97.2	0.0	0.74	0.35	0.80	0.81	2.82	8529	1123	6	0	1	0	0	logfile
✔	7SC8	25029	2023-02-22	2021-09-27	2.1	2.19	2.13	1.9	0.008	1.12	10.0	0.07	15.00	0.01	2.102	5.20	0.38	1.0	99.0	0.0	2.13	0.82	0.79	4.35	1.9	0.004	0.57	0.0	0.04	16.48	0.00	2.130	8.45	0.93	1.1	98.9	0.0	2.82	0.36	0.86	0.87	4.19	56784	6836	116	0	54	2672	0	logfile
✔	7UM7	26599	2023-02-18	2022-04-06	2.75	2.13	2.74	1.9	0.002	0.48	0.0	0.04	12.58	0.01	2.220	2.88	0.00	2.8	97.2	0.0	-0.25	0.81	0.80	4.23	1.9	0.005	0.64	0.0	0.04	15.12	0.00	2.206	3.51	1.68	4.1	95.9	0.0	0.51	0.97	0.83	0.83	4.04	8165	1089	6	0	1	0	0	logfile
✔	7UWM	26836	2023-02-18	2022-05-03	2.5	2.14	2.51	1.9	0.003	0.57	0.0	0.04	18.13	0.00	2.107	6.68	2.96	3.0	97.0	0.0	-0.69	0.80	0.79	2.42	1.9	0.002	0.55	0.0	0.04	18.27	0.00	2.114	7.45	4.39	2.9	97.1	0.0	-0.44	0.23	0.80	0.79	2.29	7972	967	9	0	9	0	0	logfile
✘	7T9i	25758	2023-02-24	2021-12-19	2.9	2.43	—	1.9	0.005	0.91	1.0	0.05	12.72	0.01	2.016	3.30	0.62	3.6	96.4	0.0	-0.16	0.69	0.63	2.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23529	1532	11	0	8	0	11557	logfile
✔	7WP9	32679	2023-02-25	2022-01-23	2.56	2.20	—	1.9	0.003	0.76	1.0	0.05	14.22	0.01	2.294	4.05	0.40	4.9	95.0	0.1	-4.01	0.71	0.72	2.33	2.0	0.005	0.66	0.0	0.05	16.39	0.00	2.081	9.21	2.39	5.4	94.6	0.0	-1.56	1.00	0.76	0.81	2.49	25077	3141	13	0	28	0	0	logfile
✔	7N1U	24123	2023-02-25	2021-05-28	3.14	2.62	—	1.9	0.013	1.75	7.0	0.13	14.19	0.01	2.003	6.59	1.56	6.1	93.7	0.3	-1.65	0.83	0.80	3.13	1.9	0.004	0.73	0.0	0.05	15.84	0.00	2.174	11.69	0.53	4.3	95.7	0.0	-0.08	0.66	0.84	0.82	2.33	26619	3225	39	0	99	0	0	logfile
✔	7KoD	22972	2023-02-26	2020-11-08	1.655	2.30	—	1.9	0.001	0.33	0.0	0.03	8.49	0.00	2.288	0.80	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	2.0	0.005	0.49	0.0	0.04	13.86	0.00	1.860	2.84	0.22	0.6	99.4	0.0	5.19	0.83	0.87	0.93	8.00	68186	4128	48	0	0	1727	32643	logfile
✔	8E9Z	27969	2023-02-18	2022-08-27	2.69	2.09	2.64	1.9	0.004	0.80	2.0	0.05	15.12	0.01	2.248	9.60	0.34	3.2	96.8	0.0	-1.79	0.79	0.79	2.55	1.9	0.003	0.57	0.0	0.04	16.07	0.00	1.969	7.33	1.49	3.2	96.8	0.0	0.95	0.35	0.79	0.80	3.01	8566	1129	6	0	2	0	0	logfile
✔	7S8o	24899	2023-02-18	2021-09-18	2.58	2.12	2.59	1.9	0.007	0.72	0.0	0.05	13.18	0.00	2.102	3.18	0.00	5.8	94.2	0.0	0.31	0.81	0.80	4.50	1.9	0.002	0.53	0.0	0.04	15.63	0.00	2.207	3.18	0.92	4.4	95.6	0.0	1.05	0.40	0.83	0.83	3.24	8331	1101	6	0	1	0	0	logfile
✔	8E9X	27967	2023-02-18	2022-08-27	2.7	2.10	2.72	1.9	0.004	0.60	0.0	0.04	12.62	0.00	2.200	6.28	0.00	4.2	95.8	0.0	-0.15	0.78	0.79	3.99	1.9	0.004	0.56	0.0	0.04	15.26	0.00	2.233	7.19	1.61	3.8	96.2	0.0	0.55	0.34	0.80	0.82	3.68	8380	1109	6	0	1	0	0	logfile
✔	8AG5	15416	2023-02-21	2022-07-19	3.47	2.11	—	1.9	0.003	0.49	0.0	0.04	17.82	0.00	2.194	6.46	0.26	3.8	96.2	0.0	0.35	0.75	0.75	3.20	1.9	0.002	0.51	0.0	0.04	17.77	0.00	2.178	6.90	0.45	3.7	96.3	0.0	0.53	0.87	0.76	0.78	2.90	13762	1703	4	0	0	0	0	logfile
✔	7M3N	23658	2023-02-17	2021-03-18	2.4	2.15	2.40	1.9	0.005	0.63	0.0	0.04	15.95	0.00	2.168	5.79	4.28	4.3	95.6	0.1	-2.53	0.43	0.82	4.98	2.0	0.002	0.55	0.0	0.04	16.96	0.00	2.273	6.81	2.75	3.7	96.3	0.0	-0.46	0.48	0.45	0.84	4.74	6004	759	3	0	0	0	0	logfile
✔	7SQG	25384	2023-02-18	2021-11-05	2.6	2.14	—	1.9	0.004	0.56	0.0	0.05	14.80	0.00	2.423	3.35	0.00	3.0	97.0	0.0	1.39	0.75	0.77	3.39	1.8	0.005	0.62	0.0	0.05	18.80	0.00	2.061	7.55	1.45	3.7	96.3	0.0	1.49	0.97	0.81	0.83	3.37	6630	810	6	0	12	0	0	logfile
✔	8E9Y	27968	2023-02-18	2022-08-27	2.79	2.12	2.79	1.9	0.005	0.81	0.0	0.05	13.31	0.00	2.217	12.56	0.12	5.2	94.8	0.0	-1.06	0.76	0.75	3.19	1.9	0.003	0.59	0.0	0.04	15.56	0.00	2.203	9.60	1.73	4.1	95.8	0.1	-0.25	0.36	0.76	0.76	2.63	8479	1123	6	0	1	0	0	logfile
✔	7NJ1	12369	2023-02-20	2021-02-14	2.9	2.23	—	1.9	0.005	0.70	1.0	0.05	13.54	0.00	2.211	9.21	1.09	7.4	92.4	0.2	-2.39	0.75	0.73	2.14	1.9	0.004	0.76	0.0	0.04	16.51	0.00	2.141	11.09	1.36	6.1	93.7	0.1	0.95	0.58	0.77	0.76	1.93	11096	1501	2	0	0	0	0	logfile

• ← previous
• Page 3 of 353
• next →