Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	7E9G	31031	2022-04-06	2021-03-04	3.5	2.34	—	1.9	0.006	0.52	0.0	0.06	11.69	0.01	2.229	8.14	0.00	4.0	96.0	0.0	-3.14	0.70	0.66	1.29	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18816	2557	10	0	3	0	0	logfile
✔	7E9H	31032	2022-04-06	2021-03-04	4.0	2.62	—	1.9	0.003	0.48	0.0	0.04	11.36	0.00	2.202	8.01	0.06	2.9	97.1	0.0	-2.83	0.68	0.61	—	1.9	0.007	0.92	0.0	0.04	15.19	0.01	2.081	15.43	0.24	5.1	94.9	0.0	-1.08	2.01	0.71	0.67	—	16847	2309	8	0	0	0	0	logfile
✔	7RCV	24407	2022-04-04	2021-07-08	2.01	1.78	—	1.9	0.023	2.41	0.0	0.13	20.43	0.01	1.915	13.88	1.99	2.6	97.4	0.0	0.92	0.78	0.79	5.10	1.9	0.005	0.87	0.0	0.05	19.00	0.01	2.033	12.58	1.99	2.7	97.2	0.0	0.62	0.91	0.80	0.82	5.27	54656	5544	114	0	228	1236	0	logfile
✔	7TDF	25827	2022-04-07	2021-12-31	2.7	2.10	2.66	1.9	0.006	0.74	0.0	0.05	12.56	0.01	2.148	2.71	0.19	3.5	96.5	0.0	0.06	0.74	0.77	4.39	1.9	0.006	0.65	0.0	0.04	15.41	0.01	2.090	5.68	1.04	2.9	97.1	0.0	2.17	1.14	0.76	0.80	3.77	19566	1188	2	0	0	0	9792	logfile
✔	6TAX	10429	2022-04-08	2019-10-31	3.2	2.63	—	1.9	0.009	1.13	0.0	0.06	11.18	0.01	2.065	5.46	0.46	9.5	90.3	0.2	-4.10	0.88	0.80	3.18	1.9	0.009	0.88	1.0	0.04	13.78	0.01	1.933	11.83	0.08	8.2	91.8	0.0	-0.33	1.90	0.89	0.82	2.08	35235	4349	1	0	71	0	0	logfile
✔	6ZGL	11210	2022-04-05	2020-06-19	1.9	1.87	—	1.9	0.013	1.55	0.0	0.12	15.52	0.01	2.196	9.00	3.73	1.1	98.9	0.0	0.13	0.73	0.83	7.03	1.9	0.003	0.56	0.0	0.04	15.75	0.00	2.118	4.55	1.00	0.6	99.4	0.0	3.59	0.75	0.76	0.83	7.07	15760	1848	24	0	0	964	0	logfile
✔	6WWR	21945	2022-04-04	2020-05-09	2.7	2.08	2.69	1.9	0.009	0.96	1.0	0.06	14.63	0.01	1.967	5.29	0.57	5.8	94.2	0.0	-3.62	0.60	0.77	5.00	2.0	0.004	0.67	0.0	0.04	16.99	0.00	1.916	6.86	1.72	3.9	96.1	0.0	-0.28	1.08	0.62	0.84	3.85	9719	1220	6	1	4	0	0	logfile
✔	7SQG	25384	2022-04-04	2021-11-05	2.6	2.14	—	1.9	0.004	0.56	0.0	0.05	14.80	0.00	2.423	3.35	0.00	3.0	97.0	0.0	1.39	0.75	0.77	3.39	1.8	0.006	0.67	0.0	0.05	18.89	0.01	2.071	8.16	1.88	4.2	95.8	0.0	1.28	0.97	0.81	0.82	3.52	6630	810	6	0	12	0	0	logfile
✔	6WWU	21948	2022-04-04	2020-05-09	2.7	2.08	2.76	1.9	0.011	1.26	1.0	0.06	16.22	0.02	2.072	6.82	2.78	5.8	94.0	0.2	-3.98	0.60	0.76	4.02	1.9	0.004	0.64	0.0	0.04	17.69	0.00	1.980	7.14	2.30	3.6	96.4	0.1	-0.47	0.68	0.61	0.82	4.01	9688	1216	6	1	4	0	0	logfile
✔	7o6Q	12740	2022-04-04	2021-04-12	1.88	2.21	—	1.9	0.010	0.71	0.0	0.05	12.80	0.01	2.115	4.83	1.25	3.2	96.8	0.0	-1.61	0.88	0.85	7.59	1.9	0.002	0.47	0.0	0.04	14.46	0.00	2.188	5.16	1.63	0.8	99.2	0.0	3.35	0.36	0.90	0.90	6.06	7999	997	8	0	0	399	0	logfile
✔	7S8o	24899	2022-04-04	2021-09-18	2.58	2.12	2.59	1.9	0.008	0.79	0.0	0.05	13.16	0.00	2.102	3.18	0.00	5.8	94.2	0.0	0.31	0.81	0.80	4.50	1.9	0.008	0.99	0.0	0.04	15.83	0.00	2.222	3.55	1.61	4.2	95.8	0.0	0.97	0.38	0.84	0.83	3.24	8331	1101	6	0	1	0	0	logfile
✘	7EFD	31084	2022-04-06	2021-03-21	1.77	1.79	1.83	1.9	0.033	3.16	60.0	0.09	15.47	0.02	0.000	2.38	2.15	1.7	97.5	0.8	-0.54	0.71	0.78	5.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20020	2400	20	0	20	780	0	logfile
✔	7WPE	32684	2022-04-08	2022-01-23	2.69	2.24	—	1.9	0.003	0.58	3.0	0.08	13.18	0.00	1.889	4.58	0.12	3.2	96.8	0.0	0.32	0.73	0.76	3.30	2.1	0.007	0.68	0.0	0.05	14.99	0.01	2.048	7.36	1.98	4.2	95.8	0.0	-0.02	0.94	0.75	0.79	3.00	32038	4187	14	0	40	0	0	logfile
✘	7D1T	30547	2022-04-04	2020-09-15	1.95	1.88	1.89	1.9	0.019	1.81	31.0	0.10	18.45	0.02	1.200	3.33	2.40	1.9	97.9	0.2	-0.93	0.77	0.85	6.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52994	5312	108	0	196	2432	0	logfile
✔	7WP9	32679	2022-04-07	2022-01-23	2.56	2.20	—	1.9	0.003	0.76	1.0	0.05	14.22	0.01	2.294	4.05	0.40	4.9	95.0	0.1	-4.01	0.71	0.72	2.33	2.0	0.005	0.64	0.0	0.05	16.42	0.00	2.068	8.95	2.25	5.0	95.0	0.0	-1.52	1.00	0.75	0.79	2.39	25077	3141	13	0	28	0	0	logfile
✔	6S61	10101	2022-04-06	2019-07-02	1.84	1.89	1.85	1.9	0.011	1.36	0.0	0.06	12.21	0.01	0.312	2.62	1.29	1.8	98.2	0.0	3.69	0.77	0.86	8.46	1.9	0.003	0.57	0.0	0.03	14.82	0.00	1.798	5.19	0.65	1.8	98.2	0.0	4.54	0.74	0.79	0.89	8.65	71060	4128	72	0	30	3854	32904	logfile
✔	7K00	22586	2022-04-13	2020-09-02	1.98	1.72	—	1.9	0.007	0.97	3.0	0.05	15.24	0.02	1.588	7.39	6.32	3.9	96.0	0.1	-1.76	0.69	0.83	5.00	1.8	0.005	0.76	0.0	0.04	15.22	0.01	1.797	7.93	2.97	3.7	96.2	0.0	0.22	0.86	0.70	0.86	4.93	149338	5585	117	4555	331	7248	0	logfile
✘	7EFC	31083	2022-04-06	2021-03-21	1.7	1.76	1.83	1.9	0.032	3.16	80.0	0.09	15.03	0.02	0.000	3.39	2.15	2.5	96.6	0.8	-0.84	0.73	0.80	6.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20020	2400	20	0	20	780	0	logfile
✔	7VUH	32128	2022-04-04	2021-11-02	3.22	2.19	—	1.9	0.003	0.64	0.0	0.04	13.57	0.00	2.099	13.73	0.00	6.2	93.8	0.0	-1.87	0.71	0.69	2.81	1.9	0.004	0.65	0.0	0.04	15.83	0.01	2.007	13.91	0.33	5.5	94.5	0.0	-1.24	0.38	0.71	0.72	2.33	8302	1042	5	0	1	0	0	logfile
✔	7N8o	24239	2022-04-04	2021-06-15	1.93	1.73	—	1.9	0.024	2.42	0.0	0.13	20.30	0.01	1.522	14.72	1.91	3.0	96.9	0.1	0.75	0.73	0.75	5.48	1.8	0.005	0.83	0.0	0.05	18.83	0.01	2.013	12.22	1.75	2.8	97.2	0.0	1.06	0.34	0.75	0.78	5.36	54656	5544	113	0	228	1236	0	logfile

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