Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7K00	22586	2022-04-13	2020-09-02	1.98	1.72	—	1.9	0.007	0.97	3.0	0.05	15.24	0.02	1.588	7.39	6.32	3.9	96.0	0.1	-1.76	0.69	0.83	5.00	1.8	0.005	0.76	0.0	0.04	15.22	0.01	1.797	7.93	2.97	3.7	96.2	0.0	0.22	0.86	0.70	0.86	4.93	149338	5585	117	4555	331	7248	0	logfile
✔	7KoD	22972	2022-04-06	2020-11-08	1.655	2.30	—	1.9	0.001	0.33	0.0	0.03	8.49	0.00	2.288	0.80	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	2.0	0.005	0.49	0.0	0.04	13.81	0.00	1.858	2.53	0.27	0.6	99.4	0.0	5.26	0.58	0.88	0.94	8.02	68186	4128	48	0	0	1727	32643	logfile
✘	7EFD	31084	2022-04-06	2021-03-21	1.77	1.79	1.83	1.9	0.033	3.16	60.0	0.09	15.47	0.02	0.000	2.38	2.15	1.7	97.5	0.8	-0.54	0.71	0.78	5.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20020	2400	20	0	20	780	0	logfile
✔	7SQG	25384	2022-04-04	2021-11-05	2.6	2.14	—	1.9	0.004	0.56	0.0	0.05	14.80	0.00	2.423	3.35	0.00	3.0	97.0	0.0	1.39	0.75	0.77	3.39	1.8	0.006	0.67	0.0	0.05	18.89	0.01	2.071	8.16	1.88	4.2	95.8	0.0	1.28	0.97	0.81	0.82	3.52	6630	810	6	0	12	0	0	logfile
✘	7EFC	31083	2022-04-06	2021-03-21	1.7	1.76	1.83	1.9	0.032	3.16	80.0	0.09	15.03	0.02	0.000	3.39	2.15	2.5	96.6	0.8	-0.84	0.73	0.80	6.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20020	2400	20	0	20	780	0	logfile
✔	6WWo	21942	2022-04-04	2020-05-09	2.8	2.07	2.79	1.9	0.011	1.28	3.0	0.06	15.86	0.02	1.958	5.97	1.99	6.1	93.5	0.3	-4.55	0.58	0.74	4.64	2.0	0.004	0.69	0.0	0.04	17.72	0.00	1.941	7.74	2.75	3.7	96.2	0.1	-0.57	2.43	0.60	0.81	3.89	9784	1230	6	1	5	0	0	logfile
✔	7WPE	32684	2022-04-08	2022-01-23	2.69	2.24	—	1.9	0.003	0.58	3.0	0.08	13.18	0.00	1.889	4.58	0.12	3.2	96.8	0.0	0.32	0.73	0.76	3.30	2.1	0.007	0.68	0.0	0.05	14.99	0.01	2.048	7.36	1.98	4.2	95.8	0.0	-0.02	0.94	0.75	0.79	3.00	32038	4187	14	0	40	0	0	logfile
✔	7S8M	24897	2022-04-04	2021-09-18	2.54	2.13	2.54	2.0	0.004	0.59	0.0	0.04	12.64	0.00	2.171	6.45	0.00	4.1	95.9	0.0	0.46	0.79	0.80	4.13	2.0	0.003	0.56	0.0	0.04	15.00	0.00	2.213	6.39	1.95	4.2	95.8	0.0	1.25	0.33	0.81	0.82	3.88	8346	1102	6	0	0	0	0	logfile
✔	7VXE	32177	2022-04-09	2021-11-12	3.2	2.31	—	2.0	0.003	0.45	0.0	0.04	7.36	0.00	2.082	1.83	0.00	4.4	95.5	0.1	-1.79	0.61	0.54	2.41	2.1	0.003	0.58	0.0	0.04	12.72	0.00	1.935	4.93	0.22	3.3	96.6	0.2	-0.03	1.46	0.70	0.72	2.67	49296	3186	3	0	0	0	24366	logfile
✔	7KBB	22788	2022-04-04	2020-10-01	4.02	2.37	4.07	2.0	0.006	1.16	0.0	0.06	14.88	0.01	2.073	14.81	1.58	5.4	94.1	0.5	-1.59	0.57	0.58	—	1.6	0.008	1.17	0.0	0.05	14.56	0.01	2.104	15.92	0.00	6.4	93.6	0.0	-0.45	1.23	0.59	0.59	—	6422	812	7	0	0	0	0	logfile
✔	7N5F	24188	2022-04-04	2021-06-05	2.7	2.27	2.74	2.0	0.023	1.50	0.0	0.10	9.99	0.01	2.468	0.16	0.00	1.3	98.7	0.0	1.68	0.36	0.75	3.32	1.7	0.003	0.56	0.0	0.04	17.43	0.00	2.324	7.74	0.95	1.3	98.7	0.0	2.60	0.79	0.35	0.77	3.26	3037	386	1	0	1	0	0	logfile
✔	7EZM	31389	2022-04-04	2021-06-01	2.9	2.20	—	2.0	0.011	1.07	1.0	0.15	13.21	0.01	2.228	4.72	0.94	3.8	96.2	0.0	-0.87	0.76	0.76	3.60	2.0	0.004	0.78	0.0	0.07	16.17	0.00	2.095	11.18	2.51	2.1	97.9	0.0	0.54	0.63	0.78	0.80	2.94	9008	1171	6	0	0	0	0	logfile
✔	7N1V	24124	2022-04-07	2021-05-28	3.21	2.67	—	2.0	0.013	1.76	10.0	0.13	13.78	0.01	1.776	4.31	0.98	6.5	93.2	0.3	-1.63	0.82	0.80	3.43	2.1	0.006	0.78	0.0	0.05	15.96	0.01	2.098	10.66	0.28	4.2	95.8	0.0	-0.34	1.32	0.84	0.83	2.81	26947	3274	35	0	95	0	0	logfile
✔	7NA7	24267	2022-04-04	2021-06-20	2.7	2.07	—	2.0	0.006	1.03	5.0	0.22	13.26	0.01	2.178	7.05	0.61	1.6	98.4	0.0	0.32	0.76	0.75	3.53	1.9	0.004	0.78	1.0	0.07	15.97	0.00	2.103	9.15	2.75	2.2	97.8	0.0	0.65	0.55	0.81	0.82	3.60	9036	1141	7	0	3	0	0	logfile
✔	7MW5	24063	2022-04-08	2021-05-15	3.42	3.24	—	2.0	0.003	0.69	0.0	0.05	15.22	0.01	2.140	14.17	0.11	8.0	91.5	0.6	-1.83	0.84	0.79	2.29	2.0	0.007	0.76	1.0	0.05	16.40	0.01	2.094	17.07	0.22	10.0	89.6	0.4	-1.65	1.14	0.84	0.81	2.04	33635	4242	41	0	83	0	0	logfile
✔	7N1Y	24127	2022-04-07	2021-05-28	4.3	2.48	—	2.0	0.015	2.09	23.0	0.15	15.16	0.01	1.099	10.84	1.91	8.5	90.8	0.6	-2.82	0.78	0.64	—	1.9	0.006	0.92	0.0	0.05	14.68	0.01	2.042	15.01	0.04	6.6	93.4	0.0	-1.50	0.70	0.78	0.64	—	26636	3242	31	0	91	0	0	logfile
✔	7QKL	14046	2022-04-04	2021-12-17	2.07	2.04	1.98	2.0	0.011	2.37	0.0	0.25	12.79	0.01	2.537	0.14	0.00	3.6	96.4	0.0	-1.75	0.40	0.83	7.75	2.0	0.005	0.71	0.0	0.05	17.30	0.00	2.476	4.39	0.25	2.7	97.3	0.0	-1.26	2.03	0.45	0.91	8.23	3468	456	6	0	0	0	0	logfile
✔	7L1Q	23115	2022-04-07	2020-12-15	3.4	2.29	—	2.0	0.008	1.29	6.0	0.07	14.92	0.01	1.807	2.68	2.54	3.7	96.1	0.2	-0.80	0.72	0.67	1.56	1.7	0.007	0.92	0.0	0.05	18.00	0.01	1.739	18.17	1.41	5.3	94.6	0.0	-0.45	2.07	0.73	0.74	1.50	24204	3118	13	0	13	0	0	logfile
✔	7JVR	22511	2022-04-04	2020-08-22	2.8	2.21	—	2.0	0.016	0.95	0.0	0.07	8.77	0.01	2.235	4.64	0.00	2.8	97.2	0.0	-0.85	0.74	0.74	2.70	2.1	0.004	0.77	0.0	0.04	14.52	0.00	2.222	15.28	2.06	2.5	97.5	0.0	0.43	0.67	0.75	0.77	2.53	8872	1126	6	0	1	0	0	logfile
✔	6YBQ	10771	2022-04-08	2020-03-17	1.96	2.06	—	2.0	0.039	1.58	0.0	0.05	15.05	0.01	1.550	4.58	0.00	2.7	97.3	0.0	-1.94	0.82	0.87	6.46	2.0	0.003	0.72	0.0	0.05	15.91	0.00	2.108	4.57	0.41	2.4	97.6	0.0	0.00	0.46	0.84	0.89	6.08	34092	4289	36	0	12	871	0	logfile

• ← previous
• Page 4 of 366
• next →