Table showing results for July 2022

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peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7o6Q	12740	2022-07-03	2021-04-12	1.88	2.21	—	1.9	0.010	0.71	0.0	0.05	12.80	0.01	2.115	4.83	1.25	3.2	96.8	0.0	-1.61	0.88	0.85	7.59	1.9	0.002	0.47	0.0	0.04	14.46	0.00	2.188	5.16	1.63	0.8	99.2	0.0	3.35	0.36	0.90	0.90	6.06	7999	997	8	0	0	399	0	logfile
✔	7M3N	23658	2022-07-03	2021-03-18	2.4	2.15	2.40	1.9	0.005	0.63	0.0	0.04	15.95	0.00	2.168	5.79	4.28	4.3	95.6	0.1	-2.53	0.43	0.82	4.98	1.9	0.005	0.62	0.0	0.05	16.99	0.00	2.273	7.83	3.06	4.5	95.3	0.1	-0.64	0.46	0.45	0.85	4.62	6004	759	3	0	0	0	0	logfile
✔	6WWU	21948	2022-07-03	2020-05-09	2.7	2.08	2.76	1.9	0.011	1.26	1.0	0.06	16.22	0.02	2.072	6.98	2.78	5.8	94.0	0.2	-3.98	0.60	0.76	4.02	1.9	0.004	0.64	0.0	0.04	17.69	0.00	1.980	7.35	2.30	3.6	96.4	0.1	-0.47	0.68	0.61	0.82	4.01	9688	1216	6	1	4	0	0	logfile
✘	7RCV	24407	2022-07-03	2021-07-08	2.01	1.78	—	1.9	0.023	2.29	0.0	0.10	19.88	0.01	1.344	14.01	1.99	2.6	97.4	0.0	0.92	0.78	0.79	5.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	54656	5544	114	0	228	1236	0	logfile
✘	7VUH	32128	2022-07-03	2021-11-02	3.22	2.19	—	1.9	0.003	0.64	0.0	0.04	13.54	0.00	1.180	14.21	0.00	6.2	93.8	0.0	-1.87	0.71	0.69	2.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8302	1042	5	0	1	0	0	logfile
✔	7T6U	25728	2022-07-03	2021-12-14	2.9	2.23	—	1.9	0.006	1.00	5.0	0.06	12.93	0.01	2.315	3.82	0.31	2.0	98.0	0.0	-3.84	0.76	0.78	4.04	2.0	0.004	0.65	1.0	0.04	16.23	0.00	2.132	9.53	2.65	2.4	97.6	0.0	0.24	1.21	0.79	0.82	3.48	9033	1152	6	0	2	0	0	logfile
✔	7NJ1	12369	2022-07-03	2021-02-14	2.9	2.23	—	1.9	0.005	0.70	1.0	0.05	13.54	0.00	2.211	9.26	1.09	7.4	92.4	0.2	-2.39	0.75	0.73	2.14	2.0	0.004	0.77	0.0	0.04	16.50	0.01	2.140	11.45	1.91	6.1	93.8	0.1	0.70	0.57	0.77	0.76	2.04	11096	1501	2	0	0	0	0	logfile
✘	7EFC	31083	2022-07-04	2021-03-21	1.7	1.76	1.83	1.9	0.032	3.16	80.0	0.09	15.03	0.02	0.000	3.39	2.15	2.5	96.6	0.8	-0.84	0.73	0.80	6.33	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	20020	2400	20	0	20	780	0	logfile
✔	7WiC	32528	2022-07-03	2022-01-03	2.8	2.21	—	1.9	0.005	0.62	0.0	0.05	12.93	0.00	2.176	7.98	0.00	2.7	97.3	0.0	0.61	0.76	0.76	3.53	1.9	0.003	0.58	0.0	0.04	15.64	0.00	2.171	7.81	1.61	3.2	96.8	0.0	1.16	0.36	0.78	0.79	3.07	9048	1158	6	0	0	0	0	logfile
✔	7SQG	25384	2022-07-03	2021-11-05	2.6	2.14	—	1.9	0.004	0.56	0.0	0.05	14.80	0.00	2.423	3.58	0.00	3.0	97.0	0.0	1.39	0.75	0.77	3.39	1.8	0.006	0.67	0.0	0.05	18.89	0.01	2.071	8.38	1.88	4.2	95.8	0.0	1.28	0.97	0.81	0.82	3.52	6630	810	6	0	12	0	0	logfile
✔	7WP9	32679	2022-07-05	2022-01-23	2.56	2.20	—	1.9	0.003	0.76	1.0	0.05	14.22	0.01	2.294	4.09	0.40	4.9	95.0	0.1	-4.01	0.71	0.72	2.33	2.0	0.005	0.64	0.0	0.05	16.42	0.00	2.068	8.99	2.25	5.0	95.0	0.0	-1.52	1.00	0.75	0.79	2.39	25077	3141	13	0	28	0	0	logfile
✔	7WPE	32684	2022-07-06	2022-01-23	2.69	2.24	—	1.9	0.003	0.58	3.0	0.08	13.18	0.00	1.889	4.66	0.12	3.2	96.8	0.0	0.32	0.73	0.76	3.30	2.1	0.007	0.68	0.0	0.05	14.99	0.01	2.048	7.49	1.98	4.2	95.8	0.0	-0.02	0.94	0.75	0.79	3.00	32038	4187	14	0	40	0	0	logfile
✔	7TDF	25827	2022-07-05	2021-12-31	2.7	2.10	2.66	1.9	0.006	0.74	0.0	0.05	12.56	0.01	2.148	2.81	0.19	3.5	96.5	0.0	0.06	0.74	0.77	4.39	1.9	0.006	0.65	0.0	0.04	15.41	0.01	2.090	5.88	1.04	2.9	97.1	0.0	2.17	1.14	0.76	0.80	3.77	19566	1188	2	0	0	0	9792	logfile
✘	7S8o	24899	2022-07-03	2021-09-18	2.58	2.12	2.59	1.9	0.005	0.70	0.0	0.05	13.11	0.00	1.310	3.36	0.00	5.8	94.2	0.0	0.31	0.81	0.80	4.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8331	1101	6	0	1	0	0	logfile
✔	6TAX	10429	2022-07-07	2019-10-31	3.2	2.63	—	1.9	0.009	1.13	0.0	0.06	11.18	0.01	2.065	5.52	0.46	9.5	90.3	0.2	-4.10	0.88	0.80	3.18	1.9	0.009	0.88	1.0	0.04	13.78	0.01	1.933	11.96	0.08	8.2	91.8	0.0	-0.33	1.90	0.89	0.82	2.08	35235	4349	1	0	71	0	0	logfile
✔	7N1U	24123	2022-07-05	2021-05-28	3.14	2.62	—	1.9	0.013	1.75	7.0	0.13	14.19	0.01	2.003	6.76	1.56	6.1	93.7	0.3	-1.65	0.83	0.80	3.13	1.9	0.004	0.76	0.0	0.05	15.84	0.01	2.016	11.63	0.25	4.0	96.0	0.0	-0.09	0.66	0.84	0.83	2.29	26619	3225	39	0	99	0	0	logfile
✔	7P6A	13223	2022-07-03	2021-07-15	1.9	1.91	1.88	1.9	0.004	0.72	0.0	0.06	12.30	0.01	2.247	3.33	0.00	3.8	96.2	0.0	-3.07	0.51	0.86	7.13	1.9	0.003	0.65	0.0	0.05	14.09	0.00	2.291	4.28	0.00	4.7	95.3	0.0	-2.61	0.82	0.55	0.89	7.80	4166	540	10	0	0	76	0	logfile
✘	7D1T	30547	2022-07-02	2020-09-15	1.95	1.88	1.89	1.9	0.020	1.91	31.0	0.10	18.53	0.02	1.200	3.45	2.40	1.9	97.9	0.2	-0.93	0.77	0.85	6.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52994	5312	108	0	196	2432	0	logfile
✔	6S61	10101	2022-07-04	2019-07-02	1.84	1.89	1.85	1.9	0.011	1.36	0.0	0.06	12.21	0.01	0.312	2.62	1.29	1.8	98.2	0.0	3.69	0.77	0.86	8.46	1.9	0.003	0.57	0.0	0.03	14.82	0.00	1.798	5.19	0.65	1.8	98.2	0.0	4.54	0.74	0.79	0.89	8.65	71060	4128	72	0	30	3854	32904	logfile
✔	6ZGL	11210	2022-07-04	2020-06-19	1.9	1.87	—	1.9	0.013	1.55	0.0	0.12	15.52	0.01	2.196	9.41	3.73	1.1	98.9	0.0	0.13	0.73	0.83	7.03	1.9	0.003	0.56	0.0	0.04	15.75	0.00	2.118	4.99	1.00	0.6	99.4	0.0	3.59	0.75	0.76	0.83	7.07	15760	1848	24	0	0	964	0	logfile

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