Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UM6	26598	2022-12-11	2022-04-06	2.79	2.13	2.81	1.9	0.021	0.64	0.0	0.04	11.12	0.00	2.359	2.51	0.12	3.8	96.2	0.0	-0.54	0.82	0.81	4.30	1.9	0.003	0.64	0.0	0.04	13.68	0.00	2.268	4.26	1.45	3.3	96.7	0.0	0.24	0.29	0.83	0.83	4.05	8175	1094	6	0	1	0	0	logfile
✔	7UM7	26599	2022-12-11	2022-04-06	2.75	2.13	2.74	1.9	0.002	0.48	0.0	0.04	12.58	0.01	2.220	2.88	0.00	2.8	97.2	0.0	-0.25	0.81	0.80	4.23	1.9	0.003	0.56	0.0	0.04	14.97	0.00	2.239	3.70	1.20	4.0	96.0	0.0	0.72	0.32	0.83	0.82	3.83	8165	1089	6	0	1	0	0	logfile
✔	7UM5	26597	2022-12-12	2022-04-06	2.73	2.12	2.75	1.9	0.003	0.56	0.0	0.04	11.81	0.00	2.281	2.35	0.00	3.8	96.2	0.0	-0.74	0.82	0.82	4.55	1.9	0.003	0.61	0.0	0.04	14.32	0.00	2.253	4.15	0.83	4.1	95.9	0.0	0.32	0.35	0.83	0.83	3.96	8277	1104	6	0	1	1	0	logfile
✘	7D1T	30547	2022-12-19	2020-09-15	1.95	1.88	1.89	1.9	0.020	1.91	31.0	0.10	18.53	0.02	1.200	3.45	2.40	1.9	97.9	0.2	-0.93	0.77	0.85	6.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	52994	5312	108	0	196	2432	0	logfile
✔	6ZGL	11210	2022-12-13	2020-06-19	1.9	1.87	—	1.9	0.013	1.55	0.0	0.12	15.52	0.01	2.196	9.41	3.73	1.1	98.9	0.0	0.13	0.73	0.83	7.03	1.9	0.003	0.56	0.0	0.04	15.75	0.00	2.118	4.99	1.00	0.6	99.4	0.0	3.59	0.75	0.75	0.83	7.07	15760	1848	24	0	0	964	0	logfile
✔	7TDF	25827	2022-12-15	2021-12-31	2.7	2.10	2.66	1.9	0.006	0.74	0.0	0.05	12.56	0.01	2.148	2.81	0.19	3.5	96.5	0.0	0.06	0.74	0.77	4.39	1.9	0.004	0.59	0.0	0.04	15.36	0.01	2.041	5.47	1.13	2.7	97.3	0.0	2.19	1.13	0.76	0.81	3.71	19566	1188	2	0	0	0	9792	logfile
✔	7NJ1	12369	2022-12-12	2021-02-14	2.9	2.23	—	1.9	0.005	0.70	1.0	0.05	13.54	0.00	2.211	9.26	1.09	7.4	92.4	0.2	-2.39	0.75	0.73	2.14	1.9	0.004	0.76	0.0	0.04	16.56	0.00	2.141	11.50	2.54	6.2	93.7	0.1	0.67	0.57	0.76	0.76	1.80	11096	1501	2	0	0	0	0	logfile
✔	7KoD	22972	2022-12-13	2020-11-08	1.655	2.30	—	1.9	0.001	0.33	0.0	0.03	8.49	0.00	2.288	0.80	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	2.0	0.005	0.51	0.0	0.04	13.89	0.00	1.846	2.78	0.11	0.8	99.2	0.0	5.13	0.58	0.87	0.93	8.03	68186	4128	48	0	0	1727	32643	logfile
✔	7VUH	32128	2022-12-12	2021-11-02	3.22	2.19	—	1.9	0.004	0.66	0.0	0.04	13.59	0.00	2.099	14.40	0.00	6.2	93.8	0.0	-1.87	0.71	0.69	2.81	1.9	0.003	0.65	0.0	0.04	15.91	0.00	2.030	14.58	0.33	6.0	94.0	0.0	-1.30	0.38	0.72	0.73	2.43	8302	1042	5	0	1	0	0	logfile
✔	6WWU	21948	2022-12-12	2020-05-09	2.7	2.08	2.76	1.9	0.011	1.26	1.0	0.06	16.22	0.02	2.072	6.98	2.78	5.8	94.0	0.2	-3.98	0.60	0.76	4.02	1.9	0.003	0.63	0.0	0.04	17.74	0.00	1.999	7.14	1.92	3.2	96.7	0.1	-0.34	0.69	0.61	0.83	3.91	9688	1216	6	1	4	0	0	logfile
✔	7RCV	24407	2022-12-11	2021-07-08	2.01	1.78	—	1.9	0.024	2.35	0.0	0.13	20.29	0.01	1.915	14.12	1.99	2.6	97.4	0.0	0.92	0.78	0.79	5.10	1.9	0.006	0.91	0.0	0.05	19.05	0.01	2.010	12.97	2.06	2.8	97.1	0.0	0.50	0.91	0.81	0.84	5.43	54656	5544	114	0	228	1236	0	logfile
✔	7E9H	31032	2022-12-13	2021-03-04	4.0	2.62	—	1.9	0.003	0.48	0.0	0.04	11.36	0.00	2.202	8.13	0.06	2.9	97.1	0.0	-2.83	0.68	0.61	—	1.9	0.003	0.72	0.0	0.04	15.04	0.00	2.138	15.92	0.48	4.8	95.2	0.0	-0.99	1.97	0.71	0.66	—	16847	2309	8	0	0	0	0	logfile
✔	7M3N	23658	2022-12-11	2021-03-18	2.4	2.15	2.40	1.9	0.005	0.63	0.0	0.04	15.95	0.00	2.168	5.79	4.28	4.3	95.6	0.1	-2.53	0.43	0.82	4.98	2.0	0.003	0.58	0.0	0.04	16.91	0.00	2.261	6.89	2.29	3.6	96.4	0.0	-0.41	0.46	0.45	0.84	4.72	6004	759	3	0	0	0	0	logfile
✔	6WWR	21945	2022-12-12	2020-05-09	2.7	2.08	2.69	1.9	0.009	0.96	1.0	0.06	14.63	0.01	1.967	5.49	0.57	5.8	94.2	0.0	-3.62	0.60	0.77	5.00	2.0	0.005	0.69	0.0	0.05	16.98	0.00	1.893	7.17	2.01	4.3	95.7	0.0	-0.46	1.08	0.62	0.84	3.96	9719	1220	6	1	4	0	0	logfile
✔	7N1U	24123	2022-12-15	2021-05-28	3.14	2.62	—	1.9	0.013	1.75	7.0	0.13	14.19	0.01	2.003	6.76	1.56	6.1	93.7	0.3	-1.65	0.83	0.80	3.13	2.1	0.005	0.76	0.0	0.05	15.77	0.00	2.094	12.43	0.71	4.6	95.4	0.0	-0.16	0.65	0.84	0.83	2.43	26619	3225	39	0	99	0	0	logfile
✔	7N8o	24239	2022-12-11	2021-06-15	1.93	1.73	—	1.9	0.024	2.36	0.0	0.13	20.20	0.01	1.522	14.96	1.91	3.0	96.9	0.1	0.75	0.73	0.75	5.48	1.8	0.004	0.76	0.0	0.05	18.62	0.01	2.011	12.03	1.57	2.8	97.2	0.0	1.10	0.35	0.75	0.77	5.40	54656	5544	113	0	228	1236	0	logfile
✔	6TAX	10429	2022-12-19	2019-10-31	3.2	2.63	—	1.9	0.009	1.13	0.0	0.06	11.18	0.01	2.065	5.52	0.46	9.5	90.3	0.2	-4.10	0.88	0.80	3.18	1.9	0.002	0.67	0.0	0.04	13.73	0.00	2.032	10.32	0.23	8.0	92.0	0.0	-0.17	1.60	0.88	0.81	2.02	35235	4349	1	0	71	0	0	logfile
✔	7UWM	26836	2022-12-11	2022-05-03	2.5	2.14	2.51	1.9	0.003	0.57	0.0	0.04	18.13	0.00	2.107	6.93	2.96	3.0	97.0	0.0	-0.69	0.80	0.79	2.42	1.9	0.002	0.53	0.0	0.04	18.42	0.00	2.115	7.00	4.39	2.6	97.4	0.0	-0.32	0.23	0.80	0.79	2.06	7972	967	9	0	9	0	0	logfile
✔	7TQY	26075	2022-12-12	2022-01-27	2.6	2.10	2.62	1.9	0.005	0.85	0.0	0.05	16.19	0.01	1.947	3.28	1.12	3.3	96.7	0.0	0.37	0.62	0.83	3.67	1.9	0.004	0.61	0.0	0.04	16.74	0.00	1.922	6.76	2.33	3.7	96.3	0.0	0.82	0.41	0.61	0.83	3.74	9890	1235	6	1	6	0	0	logfile
✔	7P6A	13223	2022-12-11	2021-07-15	1.9	1.91	1.88	1.9	0.004	0.72	0.0	0.06	12.30	0.01	2.247	3.33	0.00	3.8	96.2	0.0	-3.07	0.51	0.86	7.13	1.9	0.003	0.65	0.0	0.05	14.09	0.00	2.291	4.28	0.00	4.7	95.3	0.0	-2.61	0.82	0.55	0.89	7.80	4166	540	10	0	0	76	0	logfile

• ← previous
• Page 4 of 443
• next →