Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UWL	26835	2023-07-05	2022-05-03	3.7	2.40	3.59	1.9	0.005	0.78	1.0	0.05	16.04	0.00	2.137	15.51	0.63	7.1	92.9	0.0	-1.39	0.68	0.64	1.65	1.7	0.004	0.80	0.0	0.05	16.76	0.01	2.078	15.76	0.63	8.1	91.9	0.0	-1.62	0.45	0.69	0.66	1.57	10100	1236	16	0	22	0	0	logfile
✔	7UWM	26836	2023-07-04	2022-05-03	2.5	2.14	2.51	1.9	0.004	0.59	0.0	0.04	18.27	0.00	2.107	6.68	2.96	3.0	97.0	0.0	-0.69	0.80	0.79	2.42	1.9	0.003	0.57	0.0	0.04	18.46	0.00	2.122	7.90	4.39	3.5	96.5	0.0	-0.58	0.24	0.80	0.79	2.46	7972	967	9	0	9	0	0	logfile
✔	7UM6	26598	2023-07-04	2022-04-06	2.79	2.13	2.81	1.9	0.012	0.64	0.0	0.04	11.16	0.00	2.359	2.38	0.12	3.8	96.2	0.0	-0.54	0.82	0.81	4.30	2.0	0.003	0.61	0.0	0.04	14.17	0.00	2.248	4.01	1.81	2.8	97.2	0.0	0.66	0.38	0.83	0.83	3.39	8175	1094	6	0	1	0	0	logfile
✔	8E9Y	27968	2023-07-04	2022-08-27	2.79	2.12	2.79	1.9	0.005	0.81	0.0	0.05	13.31	0.00	2.217	12.62	0.12	5.2	94.8	0.0	-1.06	0.76	0.75	3.19	1.9	0.003	0.59	0.0	0.04	15.56	0.00	2.203	9.72	1.73	4.1	95.8	0.1	-0.25	0.36	0.76	0.76	2.63	8479	1123	6	0	1	0	0	logfile
✔	7WiC	32528	2023-07-05	2022-01-03	2.8	2.21	—	1.9	0.005	0.62	0.0	0.05	12.93	0.00	2.176	7.87	0.00	2.7	97.3	0.0	0.61	0.76	0.76	3.53	1.9	0.003	0.58	0.0	0.04	15.57	0.00	2.173	7.26	1.11	3.1	96.9	0.0	1.17	0.37	0.78	0.80	3.11	9048	1158	6	0	0	0	0	logfile
✔	8EA0	27970	2023-07-03	2022-08-27	2.56	2.05	2.66	1.9	0.003	0.55	0.0	0.04	12.24	0.00	2.237	8.88	0.00	4.3	95.7	0.0	-0.24	0.72	0.77	2.21	1.9	0.003	0.56	0.0	0.04	15.18	0.00	2.051	8.02	0.84	5.3	94.7	0.0	1.64	0.46	0.74	0.80	3.17	2286	285	1	0	2	0	0	logfile
✔	8AB6	15312	2023-07-15	2022-07-04	2.0	1.80	1.92	1.9	0.010	1.60	28.0	0.11	16.93	0.01	2.091	3.07	1.89	2.3	97.7	0.0	-0.82	0.68	0.86	6.61	1.9	0.004	0.68	0.0	0.04	16.61	0.00	1.996	3.87	0.65	1.7	98.3	0.0	1.95	0.98	0.73	0.87	6.06	32914	3878	53	0	30	1326	0	logfile
✔	7SQG	25384	2023-07-04	2021-11-05	2.6	2.14	—	1.9	0.004	0.60	0.0	0.05	13.94	0.00	2.423	3.35	0.00	3.0	97.0	0.0	1.39	0.75	0.77	3.39	1.8	0.006	0.65	0.0	0.05	18.17	0.00	2.082	8.84	1.74	3.9	96.1	0.0	1.31	0.97	0.81	0.83	3.63	6630	810	6	0	12	0	0	logfile
✔	7LD0	23278	2023-07-17	2021-01-12	3.1	2.33	3.20	1.9	0.006	0.65	0.0	0.04	13.28	0.01	2.229	9.07	0.00	6.1	93.9	0.0	-2.06	0.76	0.75	1.84	1.9	0.006	0.83	0.0	0.05	17.01	0.01	2.010	12.15	0.66	5.3	94.7	0.0	-0.69	0.60	0.77	0.78	0.93	36976	4720	8	0	0	0	0	logfile
✔	8AG5	15416	2023-07-07	2022-07-19	3.47	2.11	—	1.9	0.003	0.49	0.0	0.04	17.82	0.00	2.194	6.46	0.26	3.8	96.2	0.0	0.35	0.75	0.75	3.20	1.9	0.002	0.51	0.0	0.04	17.77	0.00	2.178	6.94	0.45	3.7	96.3	0.0	0.53	0.87	0.76	0.78	2.90	13762	1703	4	0	0	0	0	logfile
✔	6TAX	10429	2023-07-16	2019-10-31	3.2	2.63	—	1.9	0.009	1.13	0.0	0.06	11.18	0.01	2.065	5.46	0.46	9.5	90.3	0.2	-4.10	0.88	0.80	3.18	1.9	0.003	0.67	0.0	0.04	13.79	0.00	2.002	10.57	0.15	8.2	91.8	0.0	-0.10	1.60	0.88	0.81	2.07	35235	4349	1	0	71	0	0	logfile
✔	7o6Q	12740	2023-07-04	2021-04-12	1.88	2.21	—	1.9	0.010	0.71	0.0	0.05	12.80	0.01	2.115	4.83	1.25	3.2	96.8	0.0	-1.61	0.88	0.85	7.59	1.9	0.002	0.47	0.0	0.04	14.51	0.00	2.189	4.70	1.63	0.8	99.2	0.0	3.42	0.36	0.90	0.90	6.06	7999	997	8	0	0	399	0	logfile
✔	7SC8	25029	2023-07-04	2021-09-27	2.1	2.19	2.13	1.9	0.008	1.12	10.0	0.07	15.00	0.01	2.102	5.20	0.38	1.0	99.0	0.0	2.13	0.82	0.79	4.35	1.9	0.004	0.57	0.0	0.04	16.48	0.00	2.130	8.45	0.93	1.1	98.9	0.0	2.82	0.36	0.86	0.87	4.19	56784	6836	116	0	54	2672	0	logfile
✔	7S8o	24899	2023-07-04	2021-09-18	2.58	2.12	2.59	1.9	0.007	0.72	0.0	0.05	13.18	0.00	2.102	3.18	0.00	5.8	94.2	0.0	0.31	0.81	0.80	4.50	1.9	0.002	0.53	0.0	0.04	15.63	0.00	2.207	3.18	0.92	4.4	95.6	0.0	1.05	0.40	0.83	0.83	3.24	8331	1101	6	0	1	0	0	logfile
✔	7YHS	33837	2023-07-11	2022-07-14	3.37	2.19	3.33	1.9	0.005	0.91	0.0	0.05	19.61	0.01	2.129	6.19	7.08	8.0	92.0	0.1	-4.27	0.70	0.65	1.63	2.0	0.002	0.60	0.0	0.04	19.38	0.00	2.125	9.67	0.18	7.4	92.6	0.0	-1.16	1.07	0.72	0.67	1.19	24596	2949	13	109	0	0	0	logfile
✔	7USL	26738	2023-07-12	2022-04-25	2.7	2.28	—	1.9	0.004	0.61	0.0	0.05	13.68	0.00	2.106	5.30	0.00	3.2	96.8	0.0	-0.47	0.75	0.73	3.51	1.9	0.006	0.73	0.0	0.05	16.01	0.01	2.094	7.90	2.39	4.5	95.5	0.0	-0.76	0.37	0.78	0.78	3.09	19065	2464	10	0	49	0	0	logfile
✔	7T6U	25728	2023-07-05	2021-12-14	2.9	2.23	—	1.9	0.006	1.00	4.0	0.06	12.93	0.01	2.315	3.49	0.31	2.0	98.0	0.0	-3.84	0.76	0.78	4.04	2.0	0.004	0.66	0.0	0.04	16.06	0.00	2.121	9.58	2.24	2.2	97.8	0.0	0.27	1.20	0.79	0.81	3.37	9033	1152	6	0	2	0	0	logfile
✔	7UM7	26599	2023-07-04	2022-04-06	2.75	2.13	2.74	1.9	0.002	0.48	0.0	0.04	12.58	0.01	2.220	2.88	0.00	2.8	97.2	0.0	-0.25	0.81	0.80	4.23	1.9	0.005	0.64	0.0	0.04	15.12	0.00	2.206	3.51	1.68	4.1	95.9	0.0	0.51	0.97	0.83	0.83	4.04	8165	1089	6	0	1	0	0	logfile
✔	7UM5	26597	2023-07-04	2022-04-06	2.73	2.12	2.75	1.9	0.003	0.57	0.0	0.04	11.84	0.00	2.281	2.29	0.00	3.8	96.2	0.0	-0.74	0.82	0.82	4.55	1.9	0.003	0.61	0.0	0.04	14.14	0.00	2.252	3.96	1.06	4.1	95.9	0.0	0.30	0.34	0.83	0.83	3.86	8277	1104	6	0	1	1	0	logfile
✔	8E9W	27966	2023-07-04	2022-08-27	2.69	2.11	2.70	1.9	0.004	0.67	0.0	0.04	12.89	0.00	2.210	7.31	0.11	2.9	97.1	0.0	0.23	0.78	0.78	3.54	1.9	0.003	0.54	0.0	0.04	15.58	0.00	2.160	7.61	1.60	2.8	97.2	0.0	0.74	0.35	0.80	0.81	2.82	8529	1123	6	0	1	0	0	logfile

• ← previous
• Page 6 of 500
• next →