Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SCH	25035	2023-04-21	2021-09-28	3.1	2.24	3.07	2.0	0.003	0.62	0.0	0.05	11.95	0.00	2.218	9.09	0.19	4.1	95.9	0.0	0.02	0.78	0.75	3.40	2.0	0.003	0.61	0.0	0.04	15.25	0.00	2.063	10.70	0.75	5.0	95.0	0.0	0.39	0.40	0.78	0.80	2.89	9711	1190	3	0	3	0	0	logfile
✔	7UWJ	26833	2023-04-20	2022-05-03	3.2	2.38	3.23	2.0	0.004	0.79	1.0	0.05	13.05	0.01	2.189	11.24	0.00	4.1	95.9	0.0	-2.14	0.66	0.61	2.04	1.5	0.003	0.69	0.0	0.04	15.07	0.00	2.209	10.86	1.00	5.8	94.2	0.0	-2.11	0.45	0.68	0.65	1.84	5314	664	6	0	6	0	0	logfile
✔	7VUG	32127	2023-04-21	2021-11-02	3.2	2.20	—	2.0	0.004	0.61	0.0	0.04	13.57	0.00	2.099	11.94	0.00	6.3	93.7	0.0	-0.75	0.73	0.72	2.48	2.0	0.004	0.64	0.0	0.04	15.83	0.00	1.991	13.01	0.20	5.5	94.5	0.0	-0.68	0.34	0.73	0.74	2.08	8924	1127	6	0	1	0	0	logfile
✔	8DRE	27676	2023-04-27	2022-07-20	3.18	2.53	3.25	2.0	0.006	0.80	0.0	0.05	18.17	0.01	2.216	8.37	0.25	3.5	96.5	0.0	-0.71	0.73	0.76	1.15	2.0	0.003	0.54	0.0	0.04	16.68	0.00	2.182	11.13	0.28	3.1	96.9	0.0	0.25	0.43	0.73	0.78	1.33	25940	3069	18	0	20	6	0	logfile
✔	7N1Y	24127	2023-04-27	2021-05-28	4.3	2.48	—	2.0	0.016	2.11	23.0	0.15	14.95	0.01	1.099	10.84	1.91	8.5	90.8	0.6	-2.82	0.78	0.64	—	2.0	0.003	0.77	0.0	0.05	14.40	0.00	2.080	14.49	0.07	5.8	94.2	0.0	-1.33	0.71	0.78	0.64	—	26636	3242	31	0	91	0	0	logfile
✔	7XT4	33439	2023-04-24	2022-05-16	3.08	2.22	2.99	2.0	0.006	0.91	1.0	0.06	17.94	0.01	2.244	4.64	3.70	5.0	94.8	0.2	-2.53	0.80	0.80	3.42	2.0	0.004	0.62	0.0	0.04	18.32	0.00	2.219	8.16	0.47	4.7	95.3	0.1	0.35	1.44	0.81	0.82	3.13	16850	1939	5	55	4	0	0	logfile
✔	7L1Q	23115	2023-04-26	2020-12-15	3.4	2.29	—	2.0	0.008	1.29	6.0	0.07	14.92	0.01	1.807	2.68	2.54	3.7	96.1	0.2	-0.80	0.72	0.67	1.56	1.7	0.003	0.80	0.0	0.05	17.82	0.01	1.889	15.87	0.82	3.4	96.5	0.0	-0.23	1.90	0.73	0.73	1.36	24204	3118	13	0	13	0	0	logfile
✔	8DWC	27752	2023-04-20	2022-08-01	2.87	2.13	2.85	2.0	0.008	0.65	0.0	0.05	12.54	0.00	2.095	7.28	0.00	4.8	95.2	0.0	-1.14	0.76	0.81	4.35	2.0	0.003	0.56	0.0	0.04	15.16	0.00	2.147	5.43	0.59	3.7	96.3	0.0	1.33	0.36	0.77	0.83	3.20	8298	1102	6	0	0	0	0	logfile
✔	7EiB	31145	2023-04-20	2021-03-30	3.0	2.24	—	2.0	0.005	0.86	0.0	0.05	12.65	0.01	2.306	3.38	0.27	2.0	98.0	0.0	-0.34	0.74	0.75	3.17	2.0	0.004	0.65	0.0	0.04	16.05	0.00	2.132	10.34	2.02	2.4	97.6	0.0	1.21	1.20	0.74	0.77	1.90	7204	928	5	0	0	0	0	logfile
✔	8E96	27957	2023-04-26	2022-08-26	3.38	2.51	—	2.0	0.003	0.55	0.0	0.04	14.29	0.00	2.149	8.15	0.00	6.5	93.4	0.1	-1.58	0.78	0.75	2.05	2.0	0.005	0.65	0.0	0.05	15.67	0.00	2.120	9.17	0.22	7.3	92.5	0.1	-1.28	0.92	0.79	0.77	1.58	21924	2838	8	0	6	0	0	logfile
✔	7JVR	22511	2023-04-21	2020-08-22	2.8	2.21	—	2.0	0.012	0.93	0.0	0.05	8.66	0.01	2.235	4.75	0.00	2.8	97.2	0.0	-0.85	0.74	0.74	2.70	2.1	0.003	0.73	0.0	0.04	14.58	0.00	2.052	14.26	2.88	2.5	97.5	0.0	0.57	0.66	0.75	0.77	2.68	8872	1126	6	0	1	0	0	logfile
✔	7S8M	24897	2023-04-20	2021-09-18	2.54	2.13	2.54	2.0	0.004	0.59	0.0	0.04	12.64	0.00	2.171	6.57	0.00	4.1	95.9	0.0	0.46	0.79	0.80	4.13	2.0	0.003	0.57	0.0	0.04	14.98	0.00	2.210	6.76	2.06	4.1	95.9	0.0	1.26	0.32	0.81	0.83	3.81	8346	1102	6	0	0	0	0	logfile
✔	7NA7	24267	2023-04-21	2021-06-20	2.7	2.07	—	2.0	0.006	1.04	5.0	0.22	12.93	0.01	2.178	7.05	0.61	1.6	98.4	0.0	0.32	0.76	0.75	3.53	1.9	0.004	0.79	0.0	0.07	15.85	0.00	2.129	9.26	2.34	2.5	97.5	0.0	0.49	0.54	0.81	0.82	3.65	9036	1142	7	0	2	0	0	logfile
✔	7TJQ	25929	2023-04-29	2022-01-16	3.13	2.03	—	2.0	0.004	0.77	0.0	0.05	13.25	0.01	2.288	1.08	1.03	4.5	95.5	0.0	-0.55	0.75	0.75	3.94	2.0	0.007	0.72	0.0	0.05	15.36	0.00	2.157	9.61	0.40	3.3	96.7	0.0	-0.33	0.94	0.75	0.79	3.15	20538	2679	21	0	12	0	0	logfile
✔	6Xi8	22191	2023-04-20	2020-06-19	3.64	2.63	3.78	2.0	0.010	1.69	4.0	0.11	15.20	0.01	1.333	6.59	0.77	9.0	91.0	0.0	-4.62	0.66	0.54	0.71	1.9	0.004	0.90	0.0	0.05	17.20	0.01	2.175	17.94	0.97	9.0	91.0	0.0	-2.43	1.23	0.68	0.64	0.82	5022	636	4	0	2	0	0	logfile
✔	8DBi	27285	2023-04-23	2022-06-14	2.0	2.07	2.03	2.0	0.012	1.17	0.0	0.06	18.16	0.04	1.910	5.92	1.15	4.3	95.7	0.0	0.57	0.73	0.87	6.48	2.0	0.003	1.62	0.0	0.05	16.44	0.00	1.844	5.01	1.91	3.9	96.1	0.0	0.83	0.89	0.74	0.91	6.36	14496	1854	18	0	30	12	0	logfile
✔	8EAX	27989	2023-04-24	2022-08-29	3.73	2.60	3.72	2.0	0.004	0.83	0.0	0.05	14.96	0.00	2.213	11.91	0.30	9.8	89.8	0.4	-3.99	0.73	0.74	1.75	2.0	0.004	0.86	0.0	0.04	17.66	0.00	2.018	11.34	0.50	5.6	94.4	0.0	-0.32	1.34	0.73	0.73	1.30	18458	2332	8	0	0	0	0	logfile
✔	7WY5	32884	2023-04-20	2022-02-15	2.83	2.25	—	2.0	0.005	0.75	0.0	0.05	12.83	0.00	1.986	1.32	0.00	5.4	94.6	0.0	-0.28	0.77	0.76	3.50	2.0	0.003	0.60	0.0	0.04	15.45	0.00	2.154	5.58	0.92	3.5	96.5	0.0	0.77	0.39	0.78	0.78	2.47	8009	1013	5	0	0	0	0	logfile
✔	7EQ1	31254	2023-04-21	2021-04-28	3.3	2.26	—	2.0	0.003	0.58	0.0	0.04	13.83	0.00	2.113	10.24	0.00	6.5	93.5	0.0	-0.59	0.75	0.74	3.06	2.0	0.003	0.60	0.0	0.04	15.98	0.00	2.091	10.97	0.41	6.0	94.0	0.0	-0.11	0.31	0.75	0.77	2.68	8999	1150	5	0	0	0	0	logfile
✔	7XSR	33432	2023-04-24	2022-05-15	2.97	2.20	2.91	2.0	0.007	0.97	0.0	0.07	17.32	0.01	2.268	3.17	3.94	5.7	94.2	0.1	-2.57	0.80	0.79	2.87	1.9	0.003	0.62	0.0	0.04	18.51	0.00	2.168	6.39	3.19	5.3	94.7	0.1	0.11	0.56	0.80	0.82	2.69	16907	1963	5	49	4	0	0	logfile

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