Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7MiJ	23853	2022-12-14	2021-04-17	1.98	1.95	—	2.0	0.010	1.38	4.0	0.05	19.92	0.01	2.320	3.08	0.18	2.8	97.2	0.0	-3.96	0.75	0.81	5.48	2.0	0.004	0.69	0.0	0.04	18.91	0.00	2.094	5.63	1.27	3.8	96.2	0.0	0.72	0.64	0.77	0.82	5.32	23010	2556	12	0	38	328	0	logfile
✔	7N1V	24124	2022-12-15	2021-05-28	3.21	2.67	—	2.0	0.013	1.76	10.0	0.13	13.79	0.01	1.776	4.44	0.98	6.5	93.2	0.3	-1.63	0.82	0.80	3.43	2.2	0.003	0.70	0.0	0.05	15.87	0.00	2.120	9.77	0.49	4.4	95.6	0.0	-0.13	1.33	0.84	0.82	2.63	26947	3274	35	0	95	0	0	logfile
✔	7EiB	31145	2022-12-11	2021-03-30	3.0	2.24	—	2.0	0.005	0.86	0.0	0.05	12.65	0.01	2.306	3.66	0.27	2.0	98.0	0.0	-0.34	0.74	0.75	3.17	2.0	0.003	0.68	0.0	0.04	16.15	0.00	2.045	11.67	1.61	2.5	97.5	0.0	1.21	1.21	0.74	0.77	1.85	7204	928	5	0	0	0	0	logfile
✔	8DPH	27635	2022-12-12	2022-07-15	3.2	2.17	3.16	2.0	0.005	0.59	0.0	0.05	9.34	0.00	2.162	3.01	0.73	1.4	98.6	0.0	1.66	0.76	0.73	2.48	2.0	0.003	0.62	0.0	0.04	14.28	0.00	2.192	4.95	0.61	2.9	97.1	0.0	0.91	1.06	0.78	0.77	2.04	8182	1093	6	0	3	0	0	logfile
✔	6Xi8	22191	2022-12-11	2020-06-19	3.64	2.63	3.78	2.0	0.010	1.69	4.0	0.11	15.20	0.01	1.333	6.79	0.77	9.0	91.0	0.0	-4.62	0.66	0.54	0.71	2.0	0.004	0.96	0.0	0.05	17.05	0.01	2.101	19.76	1.74	7.2	92.8	0.0	-2.47	1.26	0.69	0.64	0.24	5022	636	4	0	2	0	0	logfile
✔	7LVQ	23540	2022-12-12	2021-02-26	2.9	2.12	2.86	2.0	0.024	1.33	1.0	0.09	14.76	0.01	1.920	5.41	0.66	6.4	93.5	0.1	-3.20	0.55	0.77	4.09	2.0	0.004	0.66	0.0	0.04	17.27	0.00	1.934	8.69	1.42	3.4	96.6	0.0	-0.01	1.04	0.58	0.82	3.38	9767	1226	6	1	5	0	0	logfile
✔	7V69	31739	2022-12-12	2021-08-20	3.4	2.24	—	2.0	0.003	0.65	0.0	0.04	12.64	0.00	2.096	13.46	0.00	2.9	97.1	0.0	-2.02	0.68	0.64	2.22	2.0	0.003	0.66	0.0	0.04	14.96	0.00	2.103	15.89	0.34	5.0	95.0	0.0	-1.07	1.15	0.70	0.68	2.12	8539	1122	5	0	0	0	0	logfile
✔	8DPF	27633	2022-12-12	2022-07-15	2.84	2.18	2.90	2.0	0.004	0.77	0.0	0.07	10.32	0.00	2.093	3.71	0.12	1.8	98.2	0.0	1.40	0.78	0.77	4.38	2.0	0.003	0.63	0.0	0.04	14.01	0.00	2.167	4.91	1.22	2.8	97.2	0.0	0.74	1.01	0.80	0.80	3.04	8160	1093	6	0	2	0	0	logfile
✔	7WZ7	32905	2022-12-12	2022-02-17	2.83	2.26	—	2.0	0.010	0.95	0.0	0.06	11.50	0.01	2.230	7.02	0.00	5.4	94.6	0.0	-0.69	0.71	0.71	2.86	2.0	0.005	0.69	0.0	0.04	14.88	0.00	2.133	12.89	2.20	4.6	95.4	0.0	0.40	1.18	0.72	0.73	1.69	8676	1108	5	0	0	0	0	logfile
✔	7VXE	32177	2022-12-22	2021-11-12	3.2	2.31	—	2.0	0.003	0.45	0.0	0.04	7.36	0.00	2.082	1.83	0.00	4.4	95.5	0.1	-1.79	0.61	0.54	2.41	2.1	0.004	0.58	0.0	0.04	12.66	0.00	1.937	5.05	0.22	4.0	95.8	0.2	-0.03	1.47	0.70	0.73	2.72	49296	3186	3	0	0	0	24366	logfile
✔	7TiK	25912	2022-12-11	2022-01-13	2.4	2.38	—	2.0	0.007	0.49	0.0	0.04	16.31	0.00	2.218	8.52	0.00	4.6	95.4	0.0	1.31	0.77	0.80	1.31	2.0	0.004	0.49	0.0	0.04	16.44	0.00	2.228	10.65	1.01	0.3	99.7	0.0	5.49	0.93	0.79	0.81	1.38	2565	339	6	0	0	0	0	logfile
✔	8CZi	27098	2022-12-11	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.004	0.40	0.0	0.03	15.24	0.00	2.167	6.23	0.00	0.0	100.0	0.0	5.34	0.86	0.83	0.84	1.97	2550	339	6	0	0	0	0	logfile
✔	7UWJ	26833	2022-12-11	2022-05-03	3.2	2.38	3.23	2.0	0.004	0.78	1.0	0.05	12.97	0.01	2.189	11.24	0.00	4.1	95.9	0.0	-2.14	0.66	0.61	2.04	1.9	0.003	0.64	0.0	0.04	14.84	0.00	2.225	9.91	0.67	5.0	95.0	0.0	-2.00	0.43	0.68	0.64	2.01	5314	664	6	0	6	0	0	logfile
✔	7RZR	24775	2022-12-11	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.003	0.35	0.0	0.03	15.28	0.00	2.325	4.84	0.35	0.0	100.0	0.0	6.56	0.32	0.81	0.83	3.42	2448	324	6	0	0	0	0	logfile
✔	7WPC	32682	2022-12-11	2022-01-23	2.57	2.17	—	2.0	0.003	0.71	0.0	0.05	15.08	0.01	2.253	2.67	0.12	4.2	95.8	0.0	-4.19	0.69	0.72	2.24	1.9	0.004	0.64	0.0	0.04	17.74	0.00	1.899	10.10	1.27	4.5	95.5	0.0	-0.93	1.32	0.75	0.81	3.24	8057	980	6	0	9	0	0	logfile
✔	7RQS	24635	2022-12-11	2021-08-07	3.57	2.31	3.59	2.0	0.002	0.54	0.0	0.04	13.38	0.00	2.088	9.94	0.26	7.6	92.4	0.0	-0.91	0.70	0.68	2.53	2.0	0.003	0.60	0.0	0.04	15.72	0.00	2.001	11.47	0.13	8.8	91.1	0.1	-1.03	0.59	0.70	0.69	2.33	7792	1074	1	0	1	0	0	logfile
✔	7QKL	14046	2022-12-11	2021-12-17	2.07	2.04	1.98	2.0	0.011	2.37	0.0	0.25	12.79	0.01	2.537	0.71	0.00	3.6	96.4	0.0	-1.75	0.40	0.83	7.75	2.0	0.005	0.71	0.0	0.05	17.30	0.00	2.476	5.23	0.25	2.7	97.3	0.0	-1.26	2.03	0.44	0.91	8.23	3468	456	6	0	0	0	0	logfile
✔	7RZU	24778	2022-12-11	2021-08-27	2.3	2.32	—	2.0	0.006	0.50	0.0	0.04	13.61	0.01	2.212	7.50	0.00	2.9	97.1	0.0	1.69	0.77	0.78	1.84	2.0	0.005	0.52	0.0	0.03	15.91	0.00	2.234	8.11	1.75	0.0	100.0	0.0	4.99	0.49	0.80	0.81	1.62	2439	324	6	0	0	0	0	logfile
✔	7UZS	26917	2022-12-12	2022-05-09	2.2	2.05	2.19	2.0	0.004	0.72	0.0	0.05	17.96	0.01	2.217	2.70	1.79	1.1	98.9	0.0	1.09	0.64	0.87	6.60	2.0	0.003	0.56	0.0	0.04	17.93	0.00	2.035	4.15	1.43	2.0	98.0	0.0	1.16	0.30	0.64	0.87	6.29	10550	658	1	0	0	193	5183	logfile
✔	7U66	26361	2022-12-22	2022-03-03	3.1	2.19	3.03	2.0	0.009	0.80	0.0	0.05	14.35	0.00	2.105	2.93	0.92	3.5	96.3	0.2	-0.05	0.78	0.78	3.54	2.0	0.002	0.49	0.0	0.04	15.76	0.00	2.147	3.22	0.23	1.9	98.1	0.0	1.20	1.01	0.79	0.80	2.91	26664	3348	24	0	12	0	0	logfile

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