Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RQS	24635	2023-04-20	2021-08-07	3.57	2.31	3.59	2.0	0.002	0.54	0.0	0.04	13.38	0.00	2.088	9.87	0.26	7.6	92.4	0.0	-0.91	0.70	0.68	2.53	2.0	0.003	0.64	0.0	0.04	15.66	0.00	1.984	11.67	0.26	8.9	91.0	0.1	-1.05	0.58	0.71	0.69	2.23	7792	1074	1	0	1	0	0	logfile
✔	7VXi	32180	2023-04-27	2021-11-12	3.4	2.35	—	2.0	0.002	0.49	0.0	0.04	7.29	0.00	2.125	3.01	0.00	4.3	95.5	0.1	-1.83	0.65	0.60	1.83	2.1	0.003	0.64	0.0	0.04	13.57	0.00	2.129	9.76	0.33	3.3	96.5	0.2	0.10	1.42	0.71	0.69	2.31	24570	3144	3	0	0	0	0	logfile
✔	7TiK	25912	2023-04-19	2022-01-13	2.4	2.38	—	2.0	0.007	0.49	0.0	0.04	16.31	0.00	2.218	7.94	0.00	4.6	95.4	0.0	1.31	0.77	0.80	1.31	2.0	0.003	0.50	0.0	0.04	16.49	0.00	2.245	8.91	1.01	0.6	99.4	0.0	5.53	0.94	0.78	0.80	1.16	2565	339	6	0	0	0	0	logfile
✔	7NJN	12392	2023-04-27	2021-02-17	2.64	2.61	—	2.0	0.004	0.52	0.0	0.04	14.52	0.00	1.931	6.46	0.00	2.3	97.6	0.1	1.48	0.85	0.87	3.94	2.0	0.004	0.51	0.0	0.04	15.78	0.00	1.716	6.68	0.55	2.4	97.6	0.1	1.57	0.89	0.86	0.89	3.84	74548	4927	31	0	11	16	37299	logfile
✔	7JVR	22511	2023-04-21	2020-08-22	2.8	2.21	—	2.0	0.012	0.93	0.0	0.05	8.66	0.01	2.235	4.75	0.00	2.8	97.2	0.0	-0.85	0.74	0.74	2.70	2.1	0.003	0.73	0.0	0.04	14.58	0.00	2.052	14.26	2.88	2.5	97.5	0.0	0.57	0.66	0.75	0.77	2.68	8872	1126	6	0	1	0	0	logfile
✔	7XSS	33433	2023-04-24	2022-05-15	3.2	2.32	3.17	2.1	0.003	0.61	0.0	0.04	17.99	0.01	2.143	8.25	0.59	5.7	94.2	0.1	-0.24	0.78	0.79	2.22	2.1	0.004	0.62	0.0	0.04	18.36	0.00	2.143	8.67	0.94	6.4	93.6	0.0	0.01	1.08	0.78	0.80	2.42	16847	1942	4	54	4	0	0	logfile
✔	7WJY	32552	2023-04-29	2022-01-08	3.24	2.33	—	2.1	0.003	0.70	0.0	0.05	10.47	0.01	2.216	8.31	6.82	8.1	91.6	0.2	-4.98	0.69	0.71	2.44	2.1	0.006	0.75	0.0	0.05	14.07	0.01	2.092	11.26	0.56	10.2	89.8	0.0	-2.18	0.70	0.75	0.78	2.58	29429	3756	10	0	24	0	0	logfile
✔	7Y67	33636	2023-04-21	2022-06-18	2.8	2.24	2.75	2.1	0.003	0.69	0.0	0.04	13.09	0.01	1.877	7.05	0.10	2.5	97.5	0.0	0.59	0.78	0.77	2.53	2.1	0.004	0.59	0.0	0.04	16.70	0.00	2.145	5.24	2.29	3.6	96.4	0.0	0.45	0.48	0.81	0.82	2.59	8889	1135	6	0	1	0	0	logfile
✔	6XEY	22156	2023-04-28	2020-06-14	3.25	3.61	3.10	2.1	0.005	0.85	1.0	0.06	12.74	0.01	2.265	3.63	0.26	5.1	94.8	0.1	-1.87	0.88	0.83	3.34	2.1	0.003	0.58	0.0	0.04	13.87	0.00	2.134	6.74	0.29	5.0	95.0	0.0	-0.55	0.33	0.89	0.85	2.49	28482	3788	24	0	63	0	0	logfile
✔	8DWH	27754	2023-04-20	2022-08-01	3.25	2.21	3.25	2.1	0.005	0.85	0.0	0.04	13.05	0.00	2.129	7.56	0.00	3.4	96.6	0.0	-0.94	0.73	0.78	4.11	2.1	0.004	0.62	0.0	0.04	15.36	0.00	2.096	7.64	0.62	3.3	96.7	0.0	0.39	0.97	0.73	0.81	3.35	6444	858	4	0	1	0	0	logfile
✔	7WZ2	32902	2023-04-27	2022-02-16	2.7	2.24	—	2.1	0.003	0.70	0.0	0.05	10.22	0.01	2.236	6.44	5.57	6.6	93.4	0.0	-3.27	0.76	0.74	3.09	2.0	0.004	0.70	0.0	0.05	14.91	0.00	2.088	9.51	3.22	7.6	92.4	0.0	-1.30	0.69	0.79	0.79	3.32	25490	3228	6	0	34	0	0	logfile
✔	7YK6	33888	2023-04-21	2022-07-21	3.03	2.39	3.06	2.1	0.006	0.74	0.0	0.05	14.19	0.01	2.130	11.24	0.21	5.5	94.4	0.1	-0.18	0.73	0.74	2.51	2.1	0.003	0.60	0.0	0.04	16.19	0.00	2.133	9.62	0.85	4.9	95.1	0.0	0.30	1.13	0.73	0.75	1.87	8736	1118	6	0	1	0	0	logfile
✔	7MKL	23898	2023-04-27	2021-04-24	3.2	2.50	—	2.1	0.004	0.82	0.0	0.06	12.03	0.01	1.862	9.96	0.00	2.8	97.2	0.0	0.37	0.65	0.59	1.10	2.1	0.003	0.74	0.0	0.05	14.58	0.00	2.089	8.97	0.22	3.9	96.1	0.0	-0.45	0.62	0.67	0.64	1.39	25597	3164	23	0	63	0	0	logfile
✔	7X2V	32972	2023-04-21	2022-02-26	3.09	2.34	—	2.1	0.007	0.93	0.0	0.05	11.89	0.01	2.115	6.17	0.10	5.5	94.5	0.0	-0.89	0.65	0.60	1.40	2.1	0.003	0.66	0.0	0.04	14.01	0.00	2.177	11.72	0.21	5.1	94.9	0.0	0.36	0.44	0.62	0.59	0.98	8755	1122	5	0	0	0	0	logfile
✔	7Xo6	33338	2023-04-20	2022-05-01	2.6	2.25	3.18	2.1	0.003	0.56	0.0	0.08	13.25	0.01	2.075	2.62	0.00	1.3	98.7	0.0	-1.43	0.72	0.68	2.45	2.0	0.003	0.59	0.0	0.04	17.39	0.00	2.114	8.50	1.90	1.9	98.1	0.0	0.74	1.56	0.78	0.81	3.00	6440	786	5	0	5	0	0	logfile
✔	7RZT	24777	2023-04-19	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.0	0.003	0.32	0.0	0.03	15.52	0.00	2.337	5.44	0.35	0.0	100.0	0.0	6.26	0.24	0.80	0.83	2.93	2451	324	6	0	0	0	0	logfile
✔	7oUH	13077	2023-04-23	2021-06-11	3.5	2.47	3.44	2.1	0.014	0.74	0.0	0.04	17.29	0.01	1.666	7.54	0.00	1.6	98.4	0.0	0.40	0.76	0.71	2.22	2.0	0.003	0.74	0.0	0.04	19.59	0.00	1.928	13.37	0.82	2.7	97.3	0.0	-0.22	0.68	0.75	0.75	2.17	15088	1664	18	80	10	6	0	logfile
✔	8HCQ	34663	2023-04-21	2022-11-02	3.01	2.26	2.89	2.1	0.003	0.66	0.0	0.04	16.12	0.01	1.609	9.07	0.21	3.7	96.1	0.2	0.43	0.68	0.70	1.49	2.1	0.003	0.66	0.0	0.04	16.77	0.01	2.079	10.54	0.41	4.2	95.8	0.1	0.21	1.08	0.76	0.78	1.64	8991	1157	6	0	0	0	0	logfile
✔	7Y66	33635	2023-04-21	2022-06-18	2.9	2.32	2.83	2.1	0.002	0.58	0.0	0.04	12.30	0.00	2.144	6.52	0.00	2.3	97.7	0.0	0.09	0.77	0.77	2.22	2.1	0.003	0.59	0.0	0.04	15.39	0.00	2.213	5.90	1.96	3.0	97.0	0.0	0.77	0.41	0.79	0.81	2.21	8917	1139	6	0	2	0	0	logfile
✔	7T2R	25633	2023-04-29	2021-12-06	3.2	2.31	—	2.1	0.010	1.52	6.0	0.12	15.94	0.01	1.915	10.04	5.23	10.3	89.7	0.0	-4.57	0.76	0.76	2.17	2.1	0.004	0.82	0.0	0.05	17.23	0.01	2.062	18.35	1.05	9.8	90.2	0.0	-2.07	0.55	0.77	0.79	1.81	29216	3736	20	0	22	0	0	logfile

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