Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	1oED	1044	2022-04-04	2003-03-24	4.0	3.94	—	10.4	0.014	2.29	3.0	0.10	17.23	0.01	1.183	224.94	19.76	5.2	92.7	2.1	-3.67	0.39	0.18	—	9.0	0.004	1.03	0.0	0.05	15.86	0.01	2.151	21.91	0.52	2.1	97.9	0.0	1.73	2.85	0.63	0.45	—	4926	636	5	0	0	0	0	logfile
✘	3A5X	1641	2022-04-04	2009-08-13	4.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-4.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3616	494	1	0	0	0	0	logfile
✔	3KTT	5148	2022-04-04	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	179.94	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	1.9	0.006	1.32	0.0	0.06	17.22	0.01	2.001	37.19	1.22	10.2	88.6	1.2	-2.54	1.70	0.31	0.43	—	3855	513	1	0	0	0	0	logfile
✔	3LoS	5137	2022-04-05	2010-02-04	4.3	2.98	—	3.0	0.008	2.44	224.0	0.19	19.87	0.01	2.259	88.10	23.89	17.4	68.9	13.8	-6.57	0.57	0.49	—	3.2	0.007	1.33	0.0	0.05	16.09	0.01	1.037	31.38	0.00	20.2	75.6	4.2	-4.47	1.32	0.62	0.54	—	63712	8512	16	0	0	0	0	logfile
✘	2XEA	1730	2022-04-05	2010-05-12	4.6	4.10	—	4.2	0.012	2.12	0.0	0.12	20.46	0.02	1.226	161.74	3.68	8.6	90.1	1.3	-3.51	0.39	0.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62671	7546	98	147	0	0	0	logfile
✔	3iZK	5247	2022-04-04	2010-10-29	4.9	4.48	—	7.1	0.014	1.48	16.0	0.08	12.45	0.02	2.461	2.38	0.77	2.0	97.5	0.4	-1.62	0.65	0.48	—	6.0	0.003	0.75	0.0	0.04	13.21	0.00	2.241	26.23	0.00	3.5	96.5	0.0	-0.57	1.99	0.82	0.75	—	58448	7856	16	0	0	0	0	logfile
✔	3J03	5138	2022-04-05	2011-02-10	4.8	4.09	—	6.5	0.014	1.51	16.0	0.08	13.07	0.02	2.471	3.31	1.78	3.5	96.3	0.2	-1.89	0.66	0.44	—	4.9	0.003	0.80	0.0	0.04	14.10	0.00	2.218	20.15	0.00	2.9	96.9	0.2	-0.34	1.45	0.83	0.69	—	58640	7856	16	0	0	0	0	logfile
✔	3J06	5185	2022-04-05	2011-04-26	3.3	2.88	—	3.5	0.011	2.34	441.0	0.15	21.08	0.01	1.607	79.24	14.71	21.1	65.4	13.5	-7.24	0.56	0.80	1.90	3.0	0.005	0.92	0.0	0.04	20.49	0.01	2.171	17.24	1.07	8.0	90.2	1.8	-2.96	1.27	0.55	0.79	2.24	62916	7595	98	147	0	0	0	logfile
✔	3J0G	5276	2022-04-04	2011-07-21	4.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	108000	14160	240	0	0	0	0	logfile
✔	3J0G	5275	2022-04-04	2011-07-21	4.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	108000	14160	240	0	0	0	0	logfile
✔	3J1B	5391	2022-04-05	2012-02-06	4.9	5.01	—	4.8	0.034	3.60	502.0	0.21	17.58	0.03	2.352	1.73	4.08	6.4	90.1	3.5	-3.28	0.67	0.51	—	4.8	0.003	0.80	0.0	0.05	14.96	0.01	2.173	13.80	0.00	5.4	93.8	0.8	0.69	2.24	0.78	0.69	—	62992	8304	16	0	0	0	0	logfile
✔	3J2P	5499	2022-04-05	2012-11-30	3.6	3.28	—	3.4	0.009	1.92	0.0	0.12	17.49	0.02	2.155	110.36	20.13	29.7	46.3	24.1	-7.75	0.42	0.79	1.08	3.3	0.004	0.95	0.0	0.05	17.92	0.01	1.899	74.77	1.47	22.8	73.8	3.4	-4.64	0.91	0.39	0.73	1.07	9890	1134	6	0	6	0	1086	logfile
✘	4V8Y	2421	2022-04-23	2013-07-20	4.3	4.35	—	4.3	0.026	1.73	246.0	0.10	19.96	0.02	0.030	35.60	23.07	10.6	82.9	6.5	-4.49	0.62	0.65	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	221288	12072	110	5354	711	0	7033	logfile
✔	3J5P	5778	2022-04-06	2013-10-28	3.275	3.63	3.36	3.4	0.011	1.53	0.0	0.09	21.59	0.01	1.156	79.06	27.79	5.7	94.3	0.0	-0.42	0.62	0.55	0.56	3.5	0.003	0.88	0.0	0.04	17.12	0.00	2.147	17.67	0.35	5.2	94.8	0.0	0.56	2.07	0.73	0.79	0.76	18636	2324	4	0	44	0	0	logfile
✘	3J5Q	5776	2022-04-06	2013-10-28	3.8	4.64	—	7.1	0.010	1.45	0.0	0.09	20.92	0.01	0.275	104.72	29.72	6.4	93.1	0.5	-0.53	0.58	0.44	-0.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18264	2324	8	0	168	0	0	logfile
✘	3J5R	5777	2022-04-06	2013-10-28	4.2	4.88	—	7.2	0.011	1.57	0.0	0.09	20.25	0.01	1.204	84.36	28.64	7.8	91.0	1.2	-0.91	0.58	0.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17564	2324	4	0	44	0	0	logfile
✘	4CE4	2490	2022-04-05	2013-11-08	4.9	5.03	—	5.0	0.004	0.79	0.0	0.04	14.48	0.00	1.398	13.80	2.64	5.3	94.5	0.2	-2.30	0.47	0.56	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	65473	3572	40	1437	984	0	0	logfile
✔	4Ci0	2513	2022-04-07	2013-12-05	3.36	3.43	—	3.4	0.014	1.93	24.0	1.74	23.74	0.03	1.915	119.34	39.11	3.4	96.5	0.1	1.78	0.71	0.70	0.31	3.4	0.014	2.75	0.0	0.54	18.68	0.00	2.023	19.13	0.66	4.3	95.7	0.0	-0.62	2.13	0.81	0.87	1.47	83472	10716	72	0	108	0	0	logfile
✔	3J63	5830	2022-04-05	2013-12-05	3.8	3.96	—	3.9	0.005	1.25	0.0	0.07	17.40	0.00	2.184	61.19	7.31	10.3	86.7	3.1	-4.14	0.71	0.65	1.05	3.9	0.004	0.99	0.0	0.04	18.91	0.01	2.136	17.97	2.10	2.0	98.0	0.0	-0.60	1.92	0.79	0.77	0.91	10590	1365	15	0	0	0	0	logfile
✔	3J6B	2566	2022-04-14	2014-01-22	3.2	3.23	—	3.2	0.010	1.18	13.0	0.10	18.54	0.01	0.862	5.73	10.99	6.4	92.0	1.6	-1.19	0.63	0.78	2.15	3.2	0.005	0.67	0.0	0.05	17.51	0.01	1.676	8.97	0.71	5.9	93.8	0.3	0.07	0.79	0.74	0.84	2.42	195137	6712	46	2733	113	0	83818	logfile

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