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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 1oED | 1044 | 2022-04-04 | 2003-03-24 | 4.0 | 3.94 | — | 10.4 | 0.014 | 2.29 | 3.0 | 0.10 | 17.23 | 0.01 | 1.183 | 224.94 | 19.76 | 5.2 | 92.7 | 2.1 | -3.67 | 0.39 | 0.18 | — | 9.0 | 0.004 | 1.03 | 0.0 | 0.05 | 15.86 | 0.01 | 2.151 | 21.91 | 0.52 | 2.1 | 97.9 | 0.0 | 1.73 | 2.85 | 0.63 | 0.45 | — | 4926 | 636 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 3A5X | 1641 | 2022-04-04 | 2009-08-13 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3616 | 494 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 3KTT | 5148 | 2022-04-04 | 2009-11-25 | 4.0 | 2.33 | — | 4.5 | 0.020 | 2.86 | 20.0 | 0.20 | 15.20 | 0.01 | 1.652 | 179.94 | 7.82 | 6.3 | 89.4 | 4.3 | -0.59 | 0.27 | 0.28 | — | 1.9 | 0.006 | 1.32 | 0.0 | 0.06 | 17.22 | 0.01 | 2.001 | 37.19 | 1.22 | 10.2 | 88.6 | 1.2 | -2.54 | 1.70 | 0.31 | 0.43 | — | 3855 | 513 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 3LoS | 5137 | 2022-04-05 | 2010-02-04 | 4.3 | 2.98 | — | 3.0 | 0.008 | 2.44 | 224.0 | 0.19 | 19.87 | 0.01 | 2.259 | 88.10 | 23.89 | 17.4 | 68.9 | 13.8 | -6.57 | 0.57 | 0.49 | — | 3.2 | 0.007 | 1.33 | 0.0 | 0.05 | 16.09 | 0.01 | 1.037 | 31.38 | 0.00 | 20.2 | 75.6 | 4.2 | -4.47 | 1.32 | 0.62 | 0.54 | — | 63712 | 8512 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 2XEA | 1730 | 2022-04-05 | 2010-05-12 | 4.6 | 4.10 | — | 4.2 | 0.012 | 2.12 | 0.0 | 0.12 | 20.46 | 0.02 | 1.226 | 161.74 | 3.68 | 8.6 | 90.1 | 1.3 | -3.51 | 0.39 | 0.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62671 | 7546 | 98 | 147 | 0 | 0 | 0 | logfile |
✔ | 3iZK | 5247 | 2022-04-04 | 2010-10-29 | 4.9 | 4.48 | — | 7.1 | 0.014 | 1.48 | 16.0 | 0.08 | 12.45 | 0.02 | 2.461 | 2.38 | 0.77 | 2.0 | 97.5 | 0.4 | -1.62 | 0.65 | 0.48 | — | 6.0 | 0.003 | 0.75 | 0.0 | 0.04 | 13.21 | 0.00 | 2.241 | 26.23 | 0.00 | 3.5 | 96.5 | 0.0 | -0.57 | 1.99 | 0.82 | 0.75 | — | 58448 | 7856 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J03 | 5138 | 2022-04-05 | 2011-02-10 | 4.8 | 4.09 | — | 6.5 | 0.014 | 1.51 | 16.0 | 0.08 | 13.07 | 0.02 | 2.471 | 3.31 | 1.78 | 3.5 | 96.3 | 0.2 | -1.89 | 0.66 | 0.44 | — | 4.9 | 0.003 | 0.80 | 0.0 | 0.04 | 14.10 | 0.00 | 2.218 | 20.15 | 0.00 | 2.9 | 96.9 | 0.2 | -0.34 | 1.45 | 0.83 | 0.69 | — | 58640 | 7856 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J06 | 5185 | 2022-04-05 | 2011-04-26 | 3.3 | 2.88 | — | 3.5 | 0.011 | 2.34 | 441.0 | 0.15 | 21.08 | 0.01 | 1.607 | 79.24 | 14.71 | 21.1 | 65.4 | 13.5 | -7.24 | 0.56 | 0.80 | 1.90 | 3.0 | 0.005 | 0.92 | 0.0 | 0.04 | 20.49 | 0.01 | 2.171 | 17.24 | 1.07 | 8.0 | 90.2 | 1.8 | -2.96 | 1.27 | 0.55 | 0.79 | 2.24 | 62916 | 7595 | 98 | 147 | 0 | 0 | 0 | logfile |
✔ | 3J0G | 5276 | 2022-04-04 | 2011-07-21 | 4.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 108000 | 14160 | 240 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J0G | 5275 | 2022-04-04 | 2011-07-21 | 4.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 108000 | 14160 | 240 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J1B | 5391 | 2022-04-05 | 2012-02-06 | 4.9 | 5.01 | — | 4.8 | 0.034 | 3.60 | 502.0 | 0.21 | 17.58 | 0.03 | 2.352 | 1.73 | 4.08 | 6.4 | 90.1 | 3.5 | -3.28 | 0.67 | 0.51 | — | 4.8 | 0.003 | 0.80 | 0.0 | 0.05 | 14.96 | 0.01 | 2.173 | 13.80 | 0.00 | 5.4 | 93.8 | 0.8 | 0.69 | 2.24 | 0.78 | 0.69 | — | 62992 | 8304 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J2P | 5499 | 2022-04-05 | 2012-11-30 | 3.6 | 3.28 | — | 3.4 | 0.009 | 1.92 | 0.0 | 0.12 | 17.49 | 0.02 | 2.155 | 110.36 | 20.13 | 29.7 | 46.3 | 24.1 | -7.75 | 0.42 | 0.79 | 1.08 | 3.3 | 0.004 | 0.95 | 0.0 | 0.05 | 17.92 | 0.01 | 1.899 | 74.77 | 1.47 | 22.8 | 73.8 | 3.4 | -4.64 | 0.91 | 0.39 | 0.73 | 1.07 | 9890 | 1134 | 6 | 0 | 6 | 0 | 1086 | logfile |
✘ | 4V8Y | 2421 | 2022-04-23 | 2013-07-20 | 4.3 | 4.35 | — | 4.3 | 0.026 | 1.73 | 246.0 | 0.10 | 19.96 | 0.02 | 0.030 | 35.60 | 23.07 | 10.6 | 82.9 | 6.5 | -4.49 | 0.62 | 0.65 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 221288 | 12072 | 110 | 5354 | 711 | 0 | 7033 | logfile |
✔ | 3J5P | 5778 | 2022-04-06 | 2013-10-28 | 3.275 | 3.63 | 3.36 | 3.4 | 0.011 | 1.53 | 0.0 | 0.09 | 21.59 | 0.01 | 1.156 | 79.06 | 27.79 | 5.7 | 94.3 | 0.0 | -0.42 | 0.62 | 0.55 | 0.56 | 3.5 | 0.003 | 0.88 | 0.0 | 0.04 | 17.12 | 0.00 | 2.147 | 17.67 | 0.35 | 5.2 | 94.8 | 0.0 | 0.56 | 2.07 | 0.73 | 0.79 | 0.76 | 18636 | 2324 | 4 | 0 | 44 | 0 | 0 | logfile |
✘ | 3J5Q | 5776 | 2022-04-06 | 2013-10-28 | 3.8 | 4.64 | — | 7.1 | 0.010 | 1.45 | 0.0 | 0.09 | 20.92 | 0.01 | 0.275 | 104.72 | 29.72 | 6.4 | 93.1 | 0.5 | -0.53 | 0.58 | 0.44 | -0.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18264 | 2324 | 8 | 0 | 168 | 0 | 0 | logfile |
✘ | 3J5R | 5777 | 2022-04-06 | 2013-10-28 | 4.2 | 4.88 | — | 7.2 | 0.011 | 1.57 | 0.0 | 0.09 | 20.25 | 0.01 | 1.204 | 84.36 | 28.64 | 7.8 | 91.0 | 1.2 | -0.91 | 0.58 | 0.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17564 | 2324 | 4 | 0 | 44 | 0 | 0 | logfile |
✘ | 4CE4 | 2490 | 2022-04-05 | 2013-11-08 | 4.9 | 5.03 | — | 5.0 | 0.004 | 0.79 | 0.0 | 0.04 | 14.48 | 0.00 | 1.398 | 13.80 | 2.64 | 5.3 | 94.5 | 0.2 | -2.30 | 0.47 | 0.56 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 65473 | 3572 | 40 | 1437 | 984 | 0 | 0 | logfile |
✔ | 4Ci0 | 2513 | 2022-04-07 | 2013-12-05 | 3.36 | 3.43 | — | 3.4 | 0.014 | 1.93 | 24.0 | 1.74 | 23.74 | 0.03 | 1.915 | 119.34 | 39.11 | 3.4 | 96.5 | 0.1 | 1.78 | 0.71 | 0.70 | 0.31 | 3.4 | 0.014 | 2.75 | 0.0 | 0.54 | 18.68 | 0.00 | 2.023 | 19.13 | 0.66 | 4.3 | 95.7 | 0.0 | -0.62 | 2.13 | 0.81 | 0.87 | 1.47 | 83472 | 10716 | 72 | 0 | 108 | 0 | 0 | logfile |
✔ | 3J63 | 5830 | 2022-04-05 | 2013-12-05 | 3.8 | 3.96 | — | 3.9 | 0.005 | 1.25 | 0.0 | 0.07 | 17.40 | 0.00 | 2.184 | 61.19 | 7.31 | 10.3 | 86.7 | 3.1 | -4.14 | 0.71 | 0.65 | 1.05 | 3.9 | 0.004 | 0.99 | 0.0 | 0.04 | 18.91 | 0.01 | 2.136 | 17.97 | 2.10 | 2.0 | 98.0 | 0.0 | -0.60 | 1.92 | 0.79 | 0.77 | 0.91 | 10590 | 1365 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J6B | 2566 | 2022-04-14 | 2014-01-22 | 3.2 | 3.23 | — | 3.2 | 0.010 | 1.18 | 13.0 | 0.10 | 18.54 | 0.01 | 0.862 | 5.73 | 10.99 | 6.4 | 92.0 | 1.6 | -1.19 | 0.63 | 0.78 | 2.15 | 3.2 | 0.005 | 0.67 | 0.0 | 0.05 | 17.51 | 0.01 | 1.676 | 8.97 | 0.71 | 5.9 | 93.8 | 0.3 | 0.07 | 0.79 | 0.74 | 0.84 | 2.42 | 195137 | 6712 | 46 | 2733 | 113 | 0 | 83818 | logfile |