Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5KYH	8298	2021-12-02	2016-07-21	4.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	38892	5082	21	0	0	0	0	logfile
✘	5LKi	4068	2021-12-01	2016-07-22	3.46	3.72	—	3.5	0.013	1.24	5.0	0.06	10.71	0.01	0.579	39.10	0.18	7.7	91.7	0.6	-4.39	0.65	0.79	2.37	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	55415	7135	5	0	0	0	0	logfile
✔	5LL6	4071	2021-12-01	2016-07-26	3.9	4.01	—	3.9	0.012	1.50	6.0	0.11	19.06	0.01	0.924	5.03	2.53	10.6	85.7	3.7	-3.86	0.69	0.82	1.20	3.9	0.005	0.82	0.0	0.04	18.75	0.01	1.640	19.02	0.42	10.9	88.1	1.0	-2.59	0.80	0.69	0.80	0.89	55262	3429	20	1325	5	0	0	logfile
✔	5L08	8300	2021-12-02	2016-07-26	4.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13617	1629	9	0	0	0	0	logfile
✔	5LMo	4074	2021-12-01	2016-08-01	4.3	4.71	4.30	4.3	0.009	1.47	50.0	0.12	20.86	0.01	0.865	18.47	20.40	10.6	85.8	3.6	-2.76	0.80	0.69	—	4.3	0.005	0.75	0.0	0.04	16.71	0.01	1.008	33.68	0.00	9.0	90.5	0.5	-1.75	2.17	0.87	0.84	—	54110	2622	29	1533	110	0	0	logfile
✔	5LMR	4077	2021-12-01	2016-08-01	4.45	4.71	4.60	4.4	0.008	1.39	20.0	0.12	20.50	0.01	1.426	17.92	16.73	8.7	88.5	2.8	-2.16	0.79	0.74	—	4.4	0.008	0.80	0.0	0.04	16.87	0.01	1.978	36.60	0.05	9.4	90.1	0.5	-1.92	1.60	0.84	0.85	—	55662	2628	29	1609	4	0	0	logfile
✔	5LMU	4080	2021-12-01	2016-08-01	4.0	4.12	4.00	4.0	0.008	1.44	43.0	0.12	21.32	0.01	1.289	21.15	25.30	12.0	84.2	3.8	-2.57	0.73	0.79	—	4.0	0.008	0.89	1.0	0.04	17.65	0.01	1.707	26.90	0.61	7.0	92.4	0.6	-1.45	1.58	0.75	0.83	—	55195	2550	29	1612	82	0	0	logfile
✔	5LMT	4079	2021-12-01	2016-08-01	4.15	4.33	4.20	4.2	0.008	1.43	21.0	0.12	20.74	0.01	1.290	18.77	22.35	11.9	84.8	3.3	-2.73	0.77	0.76	—	4.1	0.006	0.82	0.0	0.04	16.60	0.01	1.824	28.21	0.00	8.9	90.8	0.3	-1.60	0.89	0.80	0.83	—	55776	2622	31	1612	88	0	0	logfile
✔	5LMQ	4076	2021-12-01	2016-08-01	4.2	4.46	4.25	4.2	0.009	1.44	30.0	0.12	20.82	0.01	1.387	19.42	21.46	10.5	86.1	3.4	-2.56	0.80	0.76	—	4.2	0.005	0.76	0.0	0.04	16.78	0.01	1.816	30.88	0.05	9.1	90.4	0.5	-1.39	1.62	0.84	0.85	—	55841	2635	29	1612	66	0	0	logfile
✔	5LMV	4083	2021-12-02	2016-08-01	4.9	6.86	6.65	6.7	0.008	1.34	34.0	0.11	20.12	0.01	0.977	14.21	15.18	9.6	87.9	2.5	-1.98	0.70	0.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	59470	3124	30	1612	4	0	0	logfile
✔	5LMN	4073	2021-12-01	2016-08-01	3.55	3.68	3.61	3.6	0.007	1.42	35.0	0.12	20.67	0.01	0.925	19.84	21.59	10.4	86.7	2.8	-2.30	0.79	0.88	1.35	3.6	0.007	0.80	0.0	0.04	17.32	0.01	1.796	22.04	1.28	8.4	91.4	0.2	-1.28	1.55	0.77	0.84	1.43	54149	2623	27	1534	129	0	0	logfile
✔	5LNK	4093	2021-12-02	2016-08-04	3.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	63760	7918	61	0	144	0	0	logfile
✘	5GUP	9539	2021-12-01	2016-08-30	4.0	4.09	—	3.9	0.013	1.63	11.0	0.07	11.87	0.01	1.023	25.49	1.78	6.9	90.4	2.6	-2.02	0.70	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	109982	13895	107	0	77	0	0	logfile
✔	5T9V	8376	2021-12-02	2016-09-09	4.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	121456	13500	12	0	3720	0	0	logfile
✔	5LY6	4118	2021-12-01	2016-09-24	4.5	4.72	—	4.3	0.006	1.24	0.0	0.03	24.28	0.02	1.526	94.48	36.32	20.9	74.2	4.9	-5.32	0.34	0.59	—	4.4	0.004	0.81	0.0	0.04	13.96	0.00	2.167	15.68	0.24	10.2	89.3	0.4	-2.62	3.61	0.40	0.76	—	3725	471	1	0	0	0	0	logfile
✔	5H1C	9567	2021-12-01	2016-10-08	4.5	4.34	—	3.8	0.008	1.19	0.0	0.05	15.32	0.00	1.454	41.46	4.44	4.9	92.8	2.3	-2.37	0.52	0.66	—	3.8	0.004	0.67	0.0	0.04	15.24	0.00	1.851	12.78	0.00	4.8	94.2	1.0	0.82	0.78	0.59	0.83	—	7602	933	8	18	6	0	0	logfile
✔	5H1B	9566	2021-12-01	2016-10-08	4.4	3.94	—	3.6	0.010	1.31	0.0	0.06	14.24	0.01	1.503	54.25	5.67	6.2	91.1	2.6	-1.51	0.59	0.71	—	3.6	0.004	0.73	0.0	0.04	14.54	0.00	1.967	17.63	0.00	4.9	94.2	0.9	0.18	2.98	0.65	0.82	—	7359	924	7	9	6	0	0	logfile
✔	5M5H	4155	2021-12-01	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.004	0.94	0.0	0.05	12.39	0.01	2.260	21.55	0.00	7.9	92.1	0.0	-1.85	2.19	0.15	0.13	—	1086	132	1	0	0	0	0	logfile
✔	5M6S	3451	2021-12-01	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	23.24	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.3	0.003	0.66	0.0	0.03	19.58	0.00	1.949	10.68	0.00	6.2	93.8	0.0	2.28	2.49	0.02	0.05	—	1593	98	1	0	0	0	793	logfile
✔	5TTP	8467	2021-12-01	2016-11-04	4.8	4.88	—	4.5	0.006	1.36	0.0	0.06	11.70	0.01	2.038	24.92	0.00	14.1	85.2	0.7	-5.87	0.61	0.60	—	4.6	0.002	0.75	0.0	0.04	4.87	0.00	2.268	5.23	0.00	12.2	87.7	0.2	0.48	2.21	0.67	0.70	—	5616	1138	2	0	0	0	0	logfile

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