Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5AEY	2850	2023-08-12	2015-01-12	4.3	4.01	—	4.0	0.011	1.71	35.0	0.11	21.88	0.01	2.197	7.01	18.45	8.7	88.5	2.8	-3.27	0.64	0.81	—	3.9	0.003	0.75	0.0	0.04	15.74	0.00	2.150	14.50	0.00	9.5	90.2	0.3	-1.36	2.82	0.63	0.76	—	12675	1590	10	0	5	0	0	logfile
✔	3J9G	2699	2023-08-19	2015-01-16	3.5	2.75	—	3.5	0.011	1.34	0.0	0.06	10.86	0.01	2.365	1.99	0.00	3.6	95.7	0.7	-0.80	0.40	0.65	0.79	3.2	0.003	0.68	0.0	0.04	16.30	0.01	2.097	10.44	0.71	2.4	97.5	0.1	0.84	1.17	0.42	0.80	1.74	132930	16710	60	0	0	0	0	logfile
✔	3J9J	5778	2023-08-16	2015-02-02	3.275	3.52	3.19	3.6	0.015	1.08	0.0	0.09	9.35	0.01	2.266	2.70	0.00	3.3	94.5	2.2	-0.65	0.53	0.57	2.57	3.5	0.004	0.66	0.0	0.04	15.76	0.00	1.889	14.38	0.17	6.8	92.7	0.5	2.20	3.87	0.59	0.77	1.93	21068	1260	4	0	0	0	10624	logfile
✔	3J9i	5623	2023-08-26	2015-02-02	3.3	3.34	2.96	3.2	0.034	3.61	574.0	0.23	18.10	0.03	1.922	5.67	9.27	8.0	90.1	1.9	-3.61	0.80	0.79	3.08	3.2	0.007	0.88	0.0	0.05	17.64	0.00	2.125	13.93	1.20	3.3	96.4	0.3	0.03	0.84	0.87	0.90	2.70	46228	5978	28	0	0	0	0	logfile
✔	3J9L	2871	2023-08-11	2015-02-04	4.0	4.10	—	4.0	0.022	1.96	105.0	0.12	19.47	0.01	1.058	81.48	27.30	10.5	88.6	0.9	-4.09	0.66	0.68	—	4.0	0.048	3.15	43.0	0.12	19.35	0.02	1.814	99.41	4.32	39.9	58.2	1.9	-7.71	2.86	0.73	0.81	—	112951	8688	31	0	8320	0	0	logfile
✔	3J9K	2870	2023-08-17	2015-02-04	4.1	4.22	—	4.1	0.022	2.13	128.0	0.13	20.83	0.01	1.058	99.51	29.75	12.8	86.2	1.0	-3.18	0.68	0.68	—	4.1	0.003	0.77	0.0	0.04	13.66	0.00	2.071	16.76	0.01	5.4	94.5	0.2	-1.08	1.15	0.69	0.70	—	126512	10352	48	0	8304	0	0	logfile
✔	3J9P	6267	2023-08-14	2015-02-14	4.24	2.59	—	4.1	0.009	1.85	4.0	0.07	17.68	0.01	2.113	26.35	4.64	10.2	88.2	1.6	-3.58	0.73	0.78	—	4.2	0.004	0.99	0.0	0.04	13.80	0.00	2.128	17.46	0.00	8.5	90.8	0.7	-1.73	1.17	0.73	0.80	—	16952	2240	4	0	0	0	0	logfile
✔	3J9R	6271	2023-08-26	2015-02-17	3.9	3.83	—	3.8	0.006	0.89	0.0	0.04	9.86	0.00	2.112	3.86	0.89	14.5	80.8	4.7	-5.43	0.59	0.82	2.58	3.8	0.004	0.71	0.0	0.04	15.80	0.00	2.039	14.59	0.58	8.7	90.3	1.0	-1.87	1.33	0.62	0.82	1.85	103824	13788	36	0	0	0	0	logfile
✔	3J9Q	6270	2023-08-24	2015-02-17	3.5	3.51	—	3.5	0.008	1.16	0.0	0.06	14.05	0.00	2.284	4.67	8.68	19.1	75.1	5.8	-5.24	0.60	0.82	2.71	3.5	0.004	0.86	0.0	0.05	16.26	0.00	2.029	15.55	0.92	11.4	87.1	1.5	-1.87	1.43	0.61	0.82	2.61	99648	13224	48	0	0	0	0	logfile
✔	3J9S	6272	2023-08-11	2015-02-19	2.6	3.83	—	3.5	0.020	1.80	0.0	0.12	18.55	0.01	0.216	25.10	6.86	1.3	98.0	0.8	1.97	0.68	0.76	3.15	3.5	0.003	0.62	0.0	0.04	17.43	0.00	1.145	9.20	1.43	1.5	98.5	0.0	1.37	1.90	0.70	0.89	3.19	9813	1191	3	0	15	315	0	logfile
✔	5AJ3	2913	2023-08-13	2015-02-20	3.6	3.73	—	3.7	0.018	1.28	0.0	0.05	18.85	0.07	1.844	24.00	10.71	3.9	96.0	0.1	-3.65	0.86	0.86	2.03	3.6	0.004	1.41	0.0	0.04	19.14	0.02	1.819	16.06	0.59	4.7	95.3	0.0	0.16	1.64	0.84	0.82	1.63	66363	4665	44	1102	1006	118	0	logfile
✔	4UFT	2867	2023-08-14	2015-03-19	4.3	4.24	—	4.2	0.005	0.96	0.0	0.05	11.26	0.00	1.169	8.53	0.31	13.2	83.9	3.0	-4.63	0.54	0.70	—	4.2	0.004	0.78	0.0	0.04	13.25	0.01	2.091	11.84	0.05	8.2	90.7	1.1	-2.58	1.93	0.59	0.79	—	119847	14703	78	234	0	0	0	logfile
✔	3J9X	6310	2023-08-17	2015-03-21	3.8	3.84	—	3.8	0.014	1.24	0.0	0.08	13.09	0.02	2.369	3.42	0.48	2.8	95.6	1.6	-0.65	0.51	0.57	0.45	3.7	0.004	0.74	0.0	0.04	16.24	0.01	2.066	20.46	0.31	2.0	98.0	0.0	1.89	1.20	0.63	0.78	1.89	70702	7424	60	696	0	0	0	logfile
✔	4Ui9	2924	2023-08-13	2015-03-27	3.6	3.87	—	3.6	0.016	1.97	124.0	0.11	17.96	0.01	0.849	19.88	11.86	5.3	92.8	1.9	-1.90	0.85	0.73	1.60	3.6	0.003	0.81	0.0	0.04	17.07	0.00	2.102	15.06	0.42	5.4	94.2	0.4	0.87	3.18	0.89	0.83	1.17	66453	8472	25	0	5	0	0	logfile
✔	4UiS	2974	2023-08-12	2015-04-03	4.4	4.48	—	4.4	0.009	1.29	0.0	0.06	9.92	0.01	1.546	24.94	1.19	7.7	87.4	5.0	-2.00	0.50	0.56	—	4.4	0.004	0.80	0.0	0.04	11.88	0.00	2.133	16.76	0.00	9.9	88.9	1.2	-1.58	1.65	0.55	0.73	—	8518	791	5	0	458	0	0	logfile
✔	3JA7	6324	2023-08-25	2015-04-21	3.6	3.71	—	3.7	0.010	1.54	0.0	0.06	15.94	0.01	1.528	38.21	10.44	11.0	86.8	2.1	-4.92	0.77	0.82	1.86	3.7	0.004	0.76	0.0	0.04	16.04	0.00	2.241	10.50	0.41	5.5	93.8	0.7	-1.17	1.70	0.78	0.81	1.50	41280	5136	12	0	0	0	0	logfile
✔	5A0Q	2981	2023-08-25	2015-04-22	3.5	3.34	—	3.3	0.019	2.22	14.0	0.11	15.42	0.02	0.702	33.75	1.99	4.5	95.1	0.4	-3.18	0.60	0.61	1.82	3.3	0.005	0.87	0.0	0.05	17.77	0.01	2.111	22.76	1.02	4.9	95.0	0.1	-1.73	0.98	0.64	0.64	1.06	43448	5582	34	0	6	0	0	logfile
✔	5A1A	2984	2023-08-22	2015-04-29	2.2	2.04	2.58	2.5	0.009	1.21	0.0	0.04	13.15	0.01	0.020	14.13	1.03	3.9	95.5	0.6	-1.86	0.53	0.76	4.20	2.5	0.003	0.66	0.0	0.04	17.63	0.00	1.961	10.92	2.75	2.3	97.6	0.1	-0.56	1.09	0.53	0.79	3.86	33696	4088	12	0	20	776	0	logfile
✘	3JA8	6338	2023-08-20	2015-05-09	3.8	3.83	—	3.8	0.014	1.57	0.0	0.06	10.98	0.01	1.749	29.23	0.37	7.9	91.0	1.1	-4.26	0.68	0.80	2.30	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29838	3786	12	0	6	0	0	logfile
✔	3JAC	6343	2023-08-14	2015-06-05	4.8	6.42	—	9.4	0.007	1.81	3.0	0.07	10.64	0.03	1.020	57.64	4.17	5.0	90.3	4.8	1.36	0.42	0.40	—	9.1	0.012	1.69	0.0	0.06	13.69	0.01	1.923	77.11	0.00	27.1	71.7	1.2	-5.31	3.69	0.54	0.61	—	15741	1716	3	0	1038	0	0	logfile

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