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Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3J9D | 6239 | 2024-03-10 | 2015-01-09 | 3.3 | 2.70 | — | 3.4 | 0.027 | 2.04 | 0.0 | 0.08 | 20.57 | 0.01 | 2.034 | 23.66 | 24.92 | 8.2 | 89.6 | 2.2 | -3.64 | 0.81 | 0.89 | 2.90 | 3.3 | 0.022 | 0.82 | 0.0 | 0.04 | 17.81 | 0.00 | 2.186 | 15.94 | 5.11 | 6.7 | 92.7 | 0.5 | -1.39 | 2.36 | 0.75 | 0.84 | 2.66 | 6086 | 746 | 1 | 0 | 1 | 0 | 0 | logfile |
✔ | 3J9E | 6240 | 2024-03-10 | 2015-01-10 | 3.3 | 2.66 | — | 3.3 | 0.032 | 3.28 | 0.0 | 0.09 | 21.31 | 0.02 | 1.223 | 20.81 | 24.26 | 9.8 | 87.3 | 2.9 | -3.41 | 0.77 | 0.88 | 3.26 | 3.3 | 0.004 | 0.77 | 0.0 | 0.04 | 17.77 | 0.00 | 2.236 | 10.82 | 4.58 | 7.8 | 91.7 | 0.6 | 0.72 | 1.59 | 0.73 | 0.86 | 3.06 | 4098 | 520 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5AEY | 2850 | 2024-03-15 | 2015-01-12 | 4.3 | 4.01 | — | 4.0 | 0.011 | 1.71 | 35.0 | 0.11 | 22.05 | 0.01 | 2.197 | 7.01 | 18.45 | 8.7 | 88.5 | 2.8 | -3.27 | 0.64 | 0.81 | — | 3.9 | 0.003 | 0.75 | 0.0 | 0.04 | 15.48 | 0.00 | 2.126 | 16.08 | 0.00 | 10.1 | 89.6 | 0.3 | -1.46 | 2.59 | 0.63 | 0.77 | — | 12675 | 1590 | 10 | 0 | 5 | 0 | 0 | logfile |
✔ | 3J9G | 2699 | 2024-03-16 | 2015-01-16 | 3.5 | 2.75 | — | 3.5 | 0.011 | 1.34 | 0.0 | 0.06 | 10.86 | 0.01 | 2.365 | 1.99 | 0.00 | 3.6 | 95.7 | 0.7 | -0.80 | 0.40 | 0.65 | 0.79 | 3.1 | 0.003 | 0.68 | 0.0 | 0.04 | 16.41 | 0.01 | 2.078 | 10.45 | 3.57 | 2.4 | 97.4 | 0.1 | 0.70 | 1.16 | 0.42 | 0.80 | 1.80 | 132930 | 16710 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9J | 5778 | 2024-03-18 | 2015-02-02 | 3.275 | 3.52 | 3.19 | 3.6 | 0.015 | 1.08 | 0.0 | 0.09 | 9.35 | 0.01 | 2.266 | 2.70 | 0.00 | 3.3 | 94.5 | 2.2 | -0.65 | 0.53 | 0.57 | 2.57 | 3.5 | 0.004 | 0.65 | 0.0 | 0.04 | 15.77 | 0.00 | 1.878 | 14.85 | 1.30 | 6.9 | 92.8 | 0.3 | 2.24 | 3.87 | 0.59 | 0.76 | 2.25 | 21068 | 1260 | 4 | 0 | 0 | 0 | 10624 | logfile |
✔ | 3J9i | 5623 | 2024-03-25 | 2015-02-02 | 3.3 | 3.34 | 2.96 | 3.2 | 0.034 | 3.61 | 574.0 | 0.23 | 18.10 | 0.03 | 1.922 | 5.67 | 9.27 | 8.0 | 90.1 | 1.9 | -3.61 | 0.80 | 0.79 | 3.08 | 3.2 | 0.006 | 0.82 | 2.0 | 0.05 | 17.90 | 0.00 | 2.081 | 13.74 | 4.92 | 3.4 | 96.3 | 0.2 | 0.23 | 1.47 | 0.87 | 0.89 | 2.49 | 46228 | 5978 | 28 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9K | 2870 | 2024-03-15 | 2015-02-04 | 4.1 | 4.22 | — | 4.1 | 0.022 | 2.13 | 128.0 | 0.13 | 20.83 | 0.01 | 1.058 | 99.51 | 29.75 | 12.8 | 86.2 | 1.0 | -3.18 | 0.68 | 0.68 | — | 4.1 | 0.004 | 0.77 | 0.0 | 0.04 | 13.74 | 0.00 | 2.049 | 18.15 | 0.00 | 5.8 | 94.1 | 0.2 | -1.17 | 1.16 | 0.70 | 0.70 | — | 126512 | 10352 | 48 | 0 | 8304 | 0 | 0 | logfile |
✔ | 3J9L | 2871 | 2024-03-11 | 2015-02-04 | 4.0 | 4.10 | — | 4.0 | 0.022 | 1.96 | 105.0 | 0.12 | 19.79 | 0.01 | 1.058 | 81.48 | 27.30 | 10.5 | 88.6 | 0.9 | -4.09 | 0.66 | 0.68 | — | 4.0 | 0.045 | 3.09 | 64.0 | 0.12 | 21.30 | 0.02 | 1.887 | 101.09 | 29.26 | 40.4 | 58.0 | 1.7 | -7.66 | 2.88 | 0.73 | 0.82 | — | 112951 | 8688 | 31 | 0 | 8320 | 0 | 0 | logfile |
✔ | 3J9M | 2876 | 2024-03-03 | 2015-02-08 | 3.5 | 3.59 | 3.50 | 3.5 | 0.007 | 1.35 | 38.0 | 0.09 | 22.51 | 0.01 | 1.242 | 5.66 | 9.06 | 8.2 | 89.4 | 2.4 | -1.72 | 0.66 | 0.76 | 1.82 | 3.5 | 0.004 | 0.74 | 6.0 | 0.04 | 21.60 | 0.01 | 1.902 | 12.54 | 4.54 | 6.3 | 93.1 | 0.6 | 0.26 | 0.84 | 0.75 | 0.83 | 1.48 | 158384 | 12902 | 97 | 2454 | 309 | 0 | 0 | logfile |
✔ | 3J9P | 6267 | 2024-03-17 | 2015-02-14 | 4.24 | 2.59 | — | 4.1 | 0.009 | 1.85 | 4.0 | 0.07 | 17.68 | 0.01 | 2.113 | 26.35 | 4.64 | 10.2 | 88.2 | 1.6 | -3.58 | 0.73 | 0.78 | — | 4.1 | 0.004 | 0.95 | 0.0 | 0.04 | 14.03 | 0.00 | 2.124 | 18.39 | 0.00 | 9.4 | 89.7 | 0.9 | -1.66 | 1.17 | 0.73 | 0.80 | — | 16952 | 2240 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9Q | 6270 | 2024-03-20 | 2015-02-17 | 3.5 | 3.51 | — | 3.5 | 0.008 | 1.16 | 0.0 | 0.06 | 14.05 | 0.00 | 2.284 | 4.67 | 8.68 | 19.1 | 75.1 | 5.8 | -5.24 | 0.60 | 0.82 | 2.71 | 3.5 | 0.004 | 0.83 | 0.0 | 0.05 | 16.71 | 0.00 | 2.025 | 15.05 | 6.23 | 11.5 | 87.0 | 1.5 | -1.78 | 0.87 | 0.61 | 0.82 | 2.51 | 99648 | 13224 | 48 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9R | 6271 | 2024-03-21 | 2015-02-17 | 3.9 | 3.83 | — | 3.8 | 0.006 | 0.89 | 0.0 | 0.04 | 9.86 | 0.00 | 2.112 | 3.86 | 0.89 | 14.5 | 80.8 | 4.7 | -5.43 | 0.59 | 0.82 | 2.58 | 3.8 | 0.004 | 0.72 | 0.0 | 0.04 | 15.88 | 0.00 | 2.030 | 14.51 | 6.10 | 9.6 | 89.4 | 1.0 | -2.04 | 1.32 | 0.63 | 0.83 | 2.06 | 103824 | 13788 | 36 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J9S | 6272 | 2024-03-14 | 2015-02-19 | 2.6 | 3.83 | — | 3.5 | 0.020 | 1.80 | 0.0 | 0.12 | 18.55 | 0.01 | 0.216 | 25.10 | 6.86 | 1.3 | 98.0 | 0.8 | 1.97 | 0.68 | 0.76 | 3.15 | 3.5 | 0.004 | 0.64 | 0.0 | 0.04 | 17.28 | 0.00 | 1.101 | 8.83 | 1.33 | 1.7 | 98.3 | 0.0 | 1.27 | 1.90 | 0.70 | 0.89 | 3.32 | 9813 | 1191 | 3 | 0 | 15 | 315 | 0 | logfile |
✔ | 5AJ3 | 2913 | 2024-03-13 | 2015-02-20 | 3.6 | 3.73 | — | 3.7 | 0.018 | 1.28 | 0.0 | 0.05 | 21.86 | 0.07 | 1.844 | 24.00 | 10.71 | 3.9 | 96.0 | 0.1 | -3.65 | 0.86 | 0.86 | 2.03 | 3.6 | 0.006 | 1.43 | 0.0 | 0.04 | 22.13 | 0.02 | 1.749 | 16.85 | 4.69 | 5.2 | 94.8 | 0.0 | -0.15 | 1.63 | 0.84 | 0.83 | 1.64 | 66363 | 4665 | 44 | 1102 | 1006 | 118 | 0 | logfile |
✔ | 3J9W | 6306 | 2024-03-17 | 2015-03-16 | 3.9 | 3.93 | — | 3.8 | 0.010 | 1.50 | 0.0 | 0.03 | 24.07 | 0.02 | 1.433 | 8.85 | 0.26 | 6.0 | 92.0 | 2.0 | -1.66 | 0.74 | 0.72 | 0.72 | 3.8 | 0.005 | 0.79 | 1.0 | 0.04 | 24.66 | 0.01 | 1.838 | 20.79 | 6.90 | 7.7 | 91.7 | 0.7 | -0.50 | 1.35 | 0.80 | 0.85 | 1.37 | 135425 | 5661 | 54 | 4675 | 0 | 0 | 0 | logfile |
✔ | 3J9X | 6310 | 2024-03-15 | 2015-03-21 | 3.8 | 3.84 | — | 3.8 | 0.014 | 1.24 | 0.0 | 0.08 | 14.92 | 0.02 | 2.369 | 3.42 | 0.48 | 2.8 | 95.6 | 1.6 | -0.65 | 0.51 | 0.57 | 0.45 | 3.8 | 0.004 | 0.74 | 0.0 | 0.04 | 17.08 | 0.01 | 2.072 | 21.09 | 2.02 | 2.3 | 97.7 | 0.0 | 1.88 | 1.13 | 0.63 | 0.78 | 2.06 | 70702 | 7424 | 60 | 696 | 0 | 0 | 0 | logfile |
✔ | 3J9Y | 6311 | 2024-03-25 | 2015-03-23 | 3.9 | 3.83 | — | 3.9 | 0.006 | 0.84 | 0.0 | 0.04 | 23.32 | 0.02 | 0.974 | 10.29 | 3.21 | 10.9 | 85.6 | 3.4 | -3.83 | 0.76 | 0.77 | 0.68 | 3.7 | 0.005 | 0.86 | 1.0 | 0.04 | 23.47 | 0.01 | 1.901 | 23.67 | 7.60 | 11.2 | 88.1 | 0.6 | -2.24 | 1.55 | 0.79 | 0.84 | 0.85 | 148915 | 6657 | 58 | 4645 | 0 | 0 | 0 | logfile |
✔ | 4Ui9 | 2924 | 2024-03-13 | 2015-03-27 | 3.6 | 3.87 | — | 3.6 | 0.016 | 1.97 | 124.0 | 0.11 | 17.96 | 0.01 | 0.849 | 19.88 | 11.86 | 5.3 | 92.8 | 1.9 | -1.90 | 0.85 | 0.73 | 1.60 | 3.6 | 0.003 | 0.80 | 0.0 | 0.04 | 17.33 | 0.00 | 2.004 | 14.38 | 3.09 | 5.4 | 94.2 | 0.4 | 0.90 | 2.86 | 0.89 | 0.83 | 1.24 | 66453 | 8472 | 25 | 0 | 5 | 0 | 0 | logfile |
✔ | 3J9Z | 6315 | 2024-03-03 | 2015-03-27 | 3.6 | 3.80 | — | 3.7 | 0.017 | 2.31 | 171.0 | 0.16 | 24.24 | 0.04 | 2.267 | 1.72 | 3.84 | 7.6 | 89.1 | 3.3 | -2.82 | 0.56 | 0.39 | 0.14 | 3.7 | 0.004 | 0.74 | 1.0 | 0.04 | 23.55 | 0.01 | 1.991 | 17.75 | 3.71 | 9.1 | 90.4 | 0.5 | -2.04 | 2.18 | 0.84 | 0.83 | 0.85 | 156714 | 7125 | 59 | 4717 | 1 | 0 | 0 | logfile |
✔ | 4UiS | 2974 | 2024-03-15 | 2015-04-03 | 4.4 | 4.48 | — | 4.4 | 0.009 | 1.29 | 0.0 | 0.06 | 9.92 | 0.01 | 1.546 | 24.94 | 1.19 | 7.7 | 87.4 | 5.0 | -2.00 | 0.50 | 0.56 | — | 4.4 | 0.005 | 0.83 | 0.0 | 0.04 | 11.98 | 0.00 | 2.066 | 18.47 | 0.00 | 10.9 | 87.8 | 1.3 | -1.52 | 1.64 | 0.55 | 0.74 | — | 8518 | 791 | 5 | 0 | 458 | 0 | 0 | logfile |