Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	4V19	2787	2021-08-10	2014-09-25	3.4	3.44	—	3.4	0.009	1.23	0.0	0.05	20.02	0.01	1.860	9.69	6.97	3.8	96.1	0.1	-2.85	0.76	0.88	2.04	3.4	0.008	0.81	1.0	0.04	19.06	0.01	1.203	9.77	0.16	3.5	96.4	0.1	-0.13	1.51	0.76	0.87	2.06	69409	4361	42	1557	197	204	0	logfile
✔	4V1W	2788	2021-08-10	2014-10-02	4.7	4.69	—	4.7	0.020	2.45	172.0	0.17	18.97	0.01	2.533	7.77	7.67	3.0	96.5	0.6	-2.40	0.74	0.84	—	4.6	0.004	0.96	0.0	0.05	15.73	0.01	2.145	22.09	0.00	4.2	95.8	0.0	1.36	2.78	0.74	0.75	—	32736	4080	24	0	0	0	0	logfile
✔	3J89	6123	2021-08-07	2014-10-07	3.6	2.21	—	3.5	0.022	1.64	0.0	0.10	11.97	0.01	2.578	0.00	0.00	3.5	96.5	0.0	-0.96	0.83	0.81	0.77	3.2	0.003	0.46	0.0	0.03	20.47	0.00	2.143	7.98	0.75	0.2	99.8	0.0	4.21	2.00	0.81	0.79	0.30	9025	551	19	0	0	0	4598	logfile
✔	3J8A	6124	2021-08-08	2014-10-08	3.7	3.90	—	3.8	0.006	1.28	0.0	0.05	14.94	0.01	2.145	19.38	6.28	11.2	87.4	1.4	-5.31	0.73	0.80	2.48	3.8	0.003	0.81	0.0	0.04	16.66	0.00	2.080	14.62	0.58	4.8	94.4	0.8	-2.03	1.28	0.70	0.81	1.40	15800	1835	12	0	280	0	0	logfile
✔	3J8H	2807	2021-08-09	2014-10-26	3.8	3.95	—	3.8	0.006	1.31	4.0	0.05	10.89	0.01	1.488	33.07	2.47	5.3	92.8	1.9	-2.06	0.65	0.64	1.52	3.8	0.004	0.84	0.0	0.04	14.18	0.00	2.120	18.34	0.54	6.1	93.4	0.5	0.02	2.12	0.73	0.77	0.88	111160	12796	12	0	2276	0	0	logfile
✔	3J8i	6179	2021-08-08	2014-11-06	4.7	4.79	—	4.7	0.018	1.67	0.0	0.11	19.47	0.01	2.125	74.63	14.53	6.4	87.5	6.1	-1.59	0.66	0.76	—	4.7	0.003	0.92	0.0	0.04	13.84	0.01	2.143	16.71	0.00	10.2	89.0	0.8	-1.66	1.79	0.64	0.69	—	14800	1875	10	0	10	0	0	logfile
✔	3J92	2832	2021-08-14	2014-12-02	3.6	3.74	—	3.7	0.010	1.59	52.0	0.11	21.53	0.01	1.186	15.60	18.87	11.1	85.7	3.2	-3.22	0.79	0.74	0.42	3.7	0.008	0.84	0.0	0.04	18.82	0.01	1.179	15.96	0.20	7.9	91.5	0.6	-1.44	1.07	0.86	0.86	1.68	146386	7246	65	4013	593	0	0	logfile
✔	3J94	6204	2021-08-09	2014-12-05	4.2	2.69	—	3.1	0.009	1.96	0.0	0.07	15.84	0.01	1.261	30.86	5.87	5.0	93.0	2.0	2.31	0.83	0.77	—	2.3	0.003	0.79	0.0	0.04	14.00	0.00	1.675	14.41	0.05	4.5	94.9	0.6	0.50	3.80	0.84	0.79	—	21509	2895	12	0	11	0	0	logfile
✔	3J9C	6224	2021-08-09	2014-12-25	2.9	3.02	—	3.1	0.005	1.11	0.0	0.05	14.41	0.00	2.277	6.87	6.13	4.8	95.2	0.0	-0.81	0.74	0.87	2.67	3.0	0.003	0.60	0.0	0.04	16.51	0.00	2.203	7.87	3.70	2.5	97.5	0.0	0.36	2.00	0.76	0.86	3.08	23296	2961	7	0	14	0	0	logfile
✔	3J9D	6239	2021-08-07	2015-01-09	3.3	2.70	—	3.4	0.027	2.06	0.0	0.08	20.57	0.01	2.034	23.58	24.92	8.2	89.6	2.2	-3.64	0.81	0.89	2.90	3.3	0.022	0.88	0.0	0.05	17.63	0.00	2.210	17.00	0.30	7.8	91.5	0.7	-1.54	2.37	0.77	0.85	3.12	6086	746	1	0	1	0	0	logfile
✔	3J9E	6240	2021-08-07	2015-01-10	3.3	2.66	—	3.3	0.032	3.28	0.0	0.09	21.31	0.02	1.223	20.08	24.26	9.7	87.0	3.3	-3.45	0.77	0.88	3.26	3.3	0.003	0.75	0.0	0.04	17.82	0.00	2.238	10.21	0.46	7.6	91.9	0.6	0.84	1.26	0.74	0.85	3.49	4098	520	1	0	0	0	0	logfile
✔	5AEY	2850	2021-08-08	2015-01-12	4.3	4.01	—	4.0	0.011	1.73	35.0	0.11	22.00	0.01	2.197	7.01	18.45	8.7	88.5	2.8	-3.27	0.64	0.81	—	3.9	0.004	0.77	0.0	0.04	15.22	0.00	2.047	16.24	0.00	10.2	89.5	0.3	-1.67	2.13	0.63	0.77	—	12675	1590	10	0	5	0	0	logfile
✘	3J9G	2699	2021-08-11	2015-01-16	3.5	2.75	—	3.5	0.011	1.34	0.0	0.06	10.86	0.01	2.365	1.93	0.00	3.6	95.7	0.7	-0.80	0.40	0.65	0.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	132930	16710	60	0	0	0	0	logfile
✔	5AFi	2847	2021-08-26	2015-01-22	2.9	2.98	3.12	3.0	0.008	0.89	0.0	0.05	15.28	0.02	1.308	9.78	3.27	11.1	85.6	3.3	-3.98	0.67	0.87	2.36	3.0	0.004	0.84	0.0	0.04	16.61	0.01	1.161	14.49	4.23	10.2	89.3	0.6	-2.05	0.95	0.67	0.87	2.11	152717	6322	72	4801	340	21	0	logfile
✔	3J9i	5623	2021-08-11	2015-02-02	3.3	3.34	2.96	3.2	0.034	3.61	574.0	0.23	18.10	0.03	1.922	5.25	9.27	8.0	90.1	1.9	-3.61	0.80	0.79	3.08	3.2	0.004	0.79	0.0	0.05	17.48	0.00	2.125	13.47	0.46	3.1	96.6	0.3	0.40	0.87	0.87	0.88	2.57	46228	5978	28	0	0	0	0	logfile
✔	3J9J	5778	2021-08-09	2015-02-02	3.275	3.52	3.19	3.6	0.015	1.09	0.0	0.09	9.35	0.01	2.266	2.70	0.00	3.3	94.5	2.2	-0.65	0.53	0.57	2.57	3.5	0.003	0.65	0.0	0.04	15.98	0.00	1.906	14.19	0.61	6.6	92.7	0.6	2.53	2.48	0.60	0.77	1.76	21068	1260	4	0	0	0	10624	logfile
✔	3J9K	2870	2021-08-10	2015-02-04	4.1	4.22	—	4.1	0.022	2.13	128.0	0.13	20.86	0.01	1.058	97.85	29.75	12.8	86.2	1.0	-3.18	0.68	0.68	—	4.1	0.003	0.74	0.0	0.04	13.59	0.00	2.096	15.52	0.02	5.1	94.8	0.2	-0.95	2.31	0.70	0.71	—	126512	10352	48	0	8304	0	0	logfile
✔	3J9L	2871	2021-08-09	2015-02-04	4.0	4.10	—	4.0	0.022	1.96	105.0	0.12	19.47	0.01	1.058	80.55	27.30	10.5	88.6	0.9	-4.09	0.66	0.68	—	4.0	0.048	3.14	45.0	0.12	19.52	0.02	1.798	94.55	3.21	39.7	58.2	2.1	-7.71	2.97	0.73	0.81	—	112951	8688	31	0	8320	0	0	logfile
✔	3J9M	2876	2021-08-18	2015-02-08	3.5	3.59	3.50	3.5	0.007	1.35	38.0	0.09	19.29	0.01	1.242	5.61	9.06	8.2	89.4	2.4	-1.72	0.66	0.76	1.82	3.5	0.006	0.79	2.0	0.04	18.28	0.01	1.507	14.73	0.29	6.8	92.6	0.6	0.05	0.92	0.70	0.80	1.51	158384	12902	97	2454	309	0	0	logfile
✔	3J9P	6267	2021-08-08	2015-02-14	4.24	2.59	—	4.1	0.009	1.85	4.0	0.07	17.68	0.01	2.113	25.49	4.64	10.2	88.2	1.6	-3.58	0.73	0.78	—	4.2	0.005	1.00	0.0	0.05	13.86	0.01	2.059	25.19	0.00	10.0	89.1	0.9	-1.88	1.24	0.74	0.81	—	16952	2240	4	0	0	0	0	logfile

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