Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5A6F	3063	2023-02-19	2015-06-25	4.2	5.75	—	5.0	0.012	1.50	0.0	0.05	12.32	0.01	2.112	10.08	3.74	12.2	87.6	0.2	-4.94	0.56	0.74	—	4.9	0.002	0.56	0.0	0.04	10.89	0.00	2.048	8.96	0.00	4.7	95.3	0.0	-0.78	0.97	0.57	0.75	—	8881	540	2	0	43	0	4330	logfile
✔	5A6E	3062	2023-02-20	2015-06-25	4.5	6.76	—	5.1	0.010	3.73	0.0	0.05	15.55	0.01	2.112	8.77	3.19	11.1	88.8	0.2	-5.00	0.36	0.56	—	4.8	0.004	0.60	0.0	0.03	10.41	0.00	2.080	11.78	0.00	5.3	94.7	0.0	-0.72	1.45	0.40	0.73	—	11093	634	4	0	182	0	5102	logfile
✔	5A8L	3099	2023-02-20	2015-07-16	3.8	3.60	—	3.5	0.004	0.67	0.0	0.02	12.36	0.00	1.435	8.91	0.95	10.3	86.8	2.9	-2.06	0.18	0.43	0.47	3.5	0.005	0.82	0.0	0.04	17.26	0.01	2.034	19.30	1.33	10.7	88.1	1.1	-2.35	1.54	0.23	0.63	0.72	12264	624	9	347	0	0	0	logfile
✔	3JB6	6408	2023-02-21	2015-08-02	3.3	3.35	—	3.4	0.010	0.90	4.0	0.06	9.55	0.01	2.123	8.25	0.20	2.4	97.4	0.1	-3.72	0.63	0.90	5.02	3.4	0.002	0.58	0.0	0.04	15.04	0.00	2.139	5.90	0.40	2.0	98.0	0.0	0.23	1.20	0.62	0.88	3.64	13904	1731	6	0	2	0	0	logfile
✔	3JB7	6404	2023-02-21	2015-08-03	4.0	4.13	—	4.1	0.007	0.76	3.0	0.05	10.78	0.00	0.793	10.58	1.13	3.9	95.9	0.2	-2.17	0.76	0.85	—	4.1	0.003	0.70	0.0	0.04	15.38	0.00	2.174	10.83	0.60	2.9	97.0	0.1	0.06	0.89	0.78	0.85	—	14176	1733	8	11	3	0	0	logfile
✔	5ACo	3121	2023-02-23	2015-08-17	4.36	4.52	—	4.3	0.012	1.91	3.0	0.11	10.21	0.02	1.986	10.66	0.29	9.1	88.9	1.9	-2.40	0.70	0.68	—	4.3	0.004	0.71	0.0	0.05	11.25	0.00	2.046	11.61	0.05	7.0	92.5	0.5	-0.83	1.60	0.82	0.83	—	21297	2415	69	0	192	0	0	logfile
✔	3JBR	6475	2023-02-22	2015-09-29	4.2	4.39	—	4.2	0.008	1.30	0.0	0.06	8.64	0.00	1.419	19.19	0.37	8.1	84.8	7.0	-3.43	0.66	0.70	—	4.2	0.003	0.74	0.0	0.04	10.79	0.00	2.077	14.42	0.00	11.2	86.7	2.1	-0.60	1.53	0.66	0.71	—	16467	2148	6	0	385	0	0	logfile
✔	3JBS	6478	2023-02-16	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.0	0.003	0.61	0.0	0.04	18.11	0.00	2.225	5.17	3.95	1.7	98.3	0.0	0.99	1.75	0.21	0.81	3.63	1401	175	1	0	0	0	0	logfile
✔	3JBT	6480	2023-02-27	2015-10-15	3.8	3.89	—	3.8	0.008	1.31	7.0	0.07	19.56	0.01	1.919	70.61	18.24	8.0	88.3	3.6	-0.65	0.57	0.50	0.49	3.8	0.003	0.78	0.0	0.04	16.97	0.00	1.830	16.09	0.59	7.8	91.5	0.7	-1.46	1.75	0.70	0.68	0.58	70252	8736	28	0	21	0	0	logfile
✔	5FLU	3222	2023-02-21	2015-10-28	3.8	3.50	—	3.4	0.009	0.93	0.0	0.05	12.31	0.01	2.213	3.04	0.00	8.7	90.1	1.2	-2.36	0.72	0.64	0.95	3.2	0.003	0.70	0.0	0.04	15.70	0.00	2.142	12.31	0.37	4.7	95.3	0.0	-0.10	1.37	0.77	0.78	1.99	15132	2119	13	0	0	0	0	logfile
✔	5FN3	3238	2023-02-19	2015-11-10	4.1	4.53	—	4.1	0.011	1.81	26.0	0.10	18.64	0.01	1.021	20.42	11.34	10.7	85.3	4.0	-1.54	0.66	0.60	—	4.1	0.004	0.86	0.0	0.04	13.92	0.01	2.083	20.37	0.00	9.0	90.1	0.8	-0.82	2.23	0.71	0.79	—	10291	1318	5	0	0	0	0	logfile
✔	5FN1	3236	2023-02-23	2015-11-10	3.9	4.00	—	4.7	0.009	1.18	0.0	0.07	11.47	0.00	0.877	53.81	0.00	8.8	88.4	2.8	-3.37	0.24	0.29	0.57	3.9	0.005	0.87	0.0	0.04	16.79	0.01	1.856	24.08	1.08	13.3	85.7	1.0	-1.33	2.15	0.41	0.75	0.99	61308	3906	36	90	0	0	30078	logfile
✔	5FN2	3237	2023-02-19	2015-11-10	4.2	4.23	—	4.2	0.009	1.73	23.0	0.10	17.98	0.01	1.890	19.04	11.69	11.9	84.1	3.9	-1.77	0.48	0.55	—	4.2	0.004	0.94	0.0	0.05	14.08	0.01	2.058	23.36	0.00	9.2	90.0	0.8	-1.00	1.13	0.59	0.72	—	10276	1309	4	0	0	0	0	logfile
✔	5FN4	3239	2023-02-19	2015-11-10	4.0	4.24	—	4.2	0.010	1.71	17.0	0.10	18.07	0.01	2.131	10.17	10.51	12.0	84.8	3.2	-1.44	0.61	0.55	—	4.1	0.004	0.89	0.0	0.05	17.23	0.01	2.157	20.43	0.57	7.4	91.9	0.6	-0.37	1.73	0.69	0.79	—	9776	1250	5	0	0	0	0	logfile
✔	5FN5	3240	2023-02-19	2015-11-10	4.3	4.62	—	4.3	0.012	1.85	28.0	0.11	18.82	0.01	2.074	13.59	14.00	11.4	84.3	4.3	-1.91	0.65	0.62	—	4.3	0.004	0.88	0.0	0.04	13.59	0.01	2.139	24.44	0.00	9.1	90.1	0.8	-1.13	1.03	0.70	0.79	—	9645	1227	4	0	0	0	0	logfile
✔	5FNA	3241	2023-02-17	2015-11-11	4.8	4.43	—	4.2	0.013	1.51	0.0	0.08	12.32	0.01	2.219	36.54	0.00	6.0	94.0	0.0	-1.83	0.48	0.71	—	4.2	0.003	0.98	0.0	0.05	13.75	0.00	2.308	15.29	0.00	9.6	90.4	0.0	0.65	2.49	0.49	0.77	—	5328	680	8	0	0	0	0	logfile
✔	3JC2	3245	2023-02-17	2015-11-15	3.6	3.58	3.97	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	18.51	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.004	0.86	0.0	0.04	17.18	0.00	2.128	14.33	0.49	7.4	91.9	0.6	-1.41	3.32	0.24	0.53	1.66	3911	482	4	0	32	0	0	logfile
✘	3JC6	6534	2023-02-24	2015-11-24	3.7	4.01	—	3.9	0.009	1.53	0.0	0.06	12.91	0.01	1.203	39.69	0.87	9.8	89.0	1.1	-3.87	0.79	0.76	1.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23732	2953	12	0	1	0	0	logfile
✔	3JCA	6441	2023-02-20	2015-11-24	4.8	4.59	—	4.5	0.012	1.49	0.0	0.07	18.62	0.01	2.370	2.63	0.00	7.2	92.8	0.0	-1.87	0.75	0.75	—	4.5	0.003	0.67	0.0	0.04	19.55	0.01	2.058	15.25	0.10	5.1	94.9	0.0	-0.38	2.47	0.76	0.77	—	11466	1226	16	80	4	0	0	logfile
✔	3JCF	6551	2023-02-21	2015-12-11	3.8	4.02	—	3.9	0.004	1.03	0.0	0.04	6.81	0.00	2.057	8.41	0.00	4.6	95.4	0.0	-1.63	0.74	0.81	2.11	3.9	0.003	0.67	0.0	0.04	12.60	0.00	1.983	12.49	0.06	3.4	96.6	0.0	1.84	0.69	0.75	0.85	1.65	14228	1745	10	0	13	0	0	logfile

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