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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3JCS | 6583 | 2023-04-23 | 2016-01-21 | 2.8 | 3.07 | — | 3.0 | 0.009 | 0.98 | 1.0 | 0.05 | 19.57 | 0.03 | 1.093 | 24.89 | 1.41 | 11.8 | 88.0 | 0.2 | -5.35 | 0.72 | 0.78 | 3.98 | 3.0 | 0.007 | 0.88 | 0.0 | 0.04 | 19.86 | 0.01 | 1.859 | 18.52 | 3.13 | 10.9 | 89.1 | 0.1 | -2.74 | 0.51 | 0.71 | 0.80 | 2.76 | 117257 | 5847 | 74 | 3420 | 109 | 144 | 0 | logfile |
✔ | 5FUU | 3308 | 2023-04-25 | 2016-01-29 | 4.19 | 4.30 | — | 4.2 | 0.014 | 1.86 | 3.0 | 0.12 | 11.14 | 0.02 | 1.862 | 17.37 | 1.20 | 6.2 | 92.2 | 1.7 | -2.38 | 0.69 | 0.72 | — | 4.2 | 0.004 | 0.85 | 0.0 | 0.05 | 13.02 | 0.00 | 2.160 | 14.08 | 0.05 | 6.9 | 92.6 | 0.6 | -1.30 | 0.96 | 0.77 | 0.83 | — | 20735 | 2281 | 70 | 0 | 213 | 0 | 0 | logfile |
✔ | 5FWK | 3337 | 2023-04-27 | 2016-02-17 | 3.9 | 3.97 | — | 3.9 | 0.016 | 1.31 | 0.0 | 0.07 | 9.60 | 0.01 | 1.173 | 2.17 | 0.00 | 4.0 | 95.5 | 0.5 | -0.44 | 0.77 | 0.77 | 1.55 | 3.9 | 0.003 | 0.62 | 0.0 | 0.04 | 14.82 | 0.00 | 1.821 | 11.16 | 0.28 | 5.7 | 94.3 | 0.0 | -0.14 | 1.24 | 0.77 | 0.77 | 1.68 | 26221 | 1612 | 6 | 0 | 4 | 0 | 13109 | logfile |
✘ | 3JCU | 6617 | 2023-04-28 | 2016-03-10 | 3.2 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 75994 | 7648 | 76 | 0 | 322 | 0 | 0 | logfile |
✔ | 5iRX | 8117 | 2023-04-22 | 2016-03-14 | 2.95 | 3.39 | 2.91 | 3.3 | 0.014 | 1.44 | 0.0 | 0.07 | 15.36 | 0.01 | 1.744 | 9.65 | 0.00 | 10.7 | 89.2 | 0.1 | -6.45 | 0.67 | 0.77 | 3.80 | 3.4 | 0.004 | 0.73 | 0.0 | 0.04 | 16.65 | 0.00 | 2.241 | 8.73 | 1.73 | 8.2 | 91.8 | 0.0 | -0.58 | 0.68 | 0.62 | 0.82 | 1.93 | 13162 | 1726 | 12 | 0 | 20 | 0 | 0 | logfile |
✔ | 5iS0 | 8119 | 2023-04-22 | 2016-03-15 | 3.43 | 3.36 | 3.37 | 3.2 | 0.015 | 1.24 | 0.0 | 0.06 | 10.52 | 0.01 | 1.283 | 5.42 | 0.00 | 10.1 | 89.7 | 0.3 | -5.27 | 0.63 | 0.73 | 2.61 | 3.2 | 0.003 | 0.75 | 0.0 | 0.04 | 14.23 | 0.00 | 2.152 | 11.06 | 0.28 | 5.4 | 94.6 | 0.0 | -0.22 | 1.47 | 0.63 | 0.81 | 2.48 | 11808 | 1576 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 5iRZ | 8118 | 2023-04-22 | 2016-03-15 | 3.28 | 3.63 | 3.24 | 3.5 | 0.010 | 1.31 | 0.0 | 0.23 | 16.19 | 0.00 | 2.008 | 9.02 | 0.00 | 7.5 | 92.5 | 0.0 | -5.78 | 0.68 | 0.77 | 4.48 | 3.5 | 0.003 | 0.61 | 0.0 | 0.04 | 15.99 | 0.00 | 2.158 | 8.90 | 0.28 | 7.1 | 92.9 | 0.0 | 0.91 | 0.68 | 0.65 | 0.84 | 2.94 | 12504 | 1576 | 8 | 0 | 24 | 0 | 0 | logfile |
✔ | 5iT9 | 8124 | 2023-04-29 | 2016-03-16 | 3.8 | 3.86 | 3.80 | 3.9 | 0.007 | 1.31 | 42.0 | 0.10 | 21.51 | 0.01 | 0.713 | 10.39 | 9.44 | 11.2 | 84.3 | 4.6 | -3.05 | 0.60 | 0.76 | 0.99 | 3.8 | 0.005 | 0.84 | 0.0 | 0.04 | 19.92 | 0.01 | 1.810 | 19.12 | 1.00 | 11.9 | 86.6 | 1.5 | -2.03 | 1.72 | 0.62 | 0.79 | 1.00 | 80144 | 4848 | 43 | 1972 | 83 | 0 | 0 | logfile |
✔ | 5G04 | 3385 | 2023-04-23 | 2016-03-16 | 3.9 | 3.86 | — | 3.8 | 0.019 | 1.88 | 181.0 | 0.13 | 19.17 | 0.01 | 1.629 | 17.65 | 13.63 | 6.3 | 91.5 | 2.2 | -2.36 | 0.78 | 0.65 | 0.91 | 3.8 | 0.008 | 0.89 | 0.0 | 0.04 | 18.07 | 0.00 | 2.003 | 19.55 | 0.83 | 5.9 | 93.5 | 0.6 | 0.04 | 1.74 | 0.84 | 0.77 | 0.67 | 65481 | 8322 | 22 | 0 | 3 | 0 | 0 | logfile |
✔ | 5G05 | 3388 | 2023-04-22 | 2016-03-16 | 3.4 | 3.84 | — | 3.5 | 0.016 | 1.81 | 55.0 | 0.10 | 18.98 | 0.01 | 0.612 | 56.69 | 17.76 | 4.5 | 93.6 | 1.8 | -0.14 | 0.85 | 0.76 | 1.42 | 3.5 | 0.003 | 0.84 | 0.0 | 0.04 | 17.34 | 0.00 | 2.093 | 16.82 | 0.41 | 4.9 | 94.6 | 0.5 | 0.75 | 3.20 | 0.89 | 0.84 | 1.25 | 63181 | 8027 | 21 | 0 | 3 | 0 | 0 | logfile |
✔ | 5G06 | 3366 | 2023-04-27 | 2016-03-17 | 4.2 | 4.89 | — | 4.7 | 0.036 | 3.53 | 246.0 | 0.21 | 17.03 | 0.03 | 1.189 | 3.05 | 3.01 | 5.9 | 92.3 | 1.9 | -2.39 | 0.66 | 0.46 | — | 4.7 | 0.003 | 0.75 | 0.0 | 0.04 | 14.36 | 0.00 | 2.082 | 17.81 | 0.00 | 4.2 | 95.6 | 0.1 | -0.48 | 1.80 | 0.88 | 0.79 | — | 26794 | 3420 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JCZ | 6630 | 2023-04-26 | 2016-03-27 | 3.26 | 3.11 | — | 3.3 | 0.008 | 0.69 | 0.0 | 0.05 | 7.32 | 0.01 | 2.244 | 8.75 | 0.00 | 7.0 | 93.0 | 0.0 | -4.42 | 0.77 | 0.85 | 4.34 | 3.3 | 0.003 | 0.61 | 0.0 | 0.04 | 13.77 | 0.00 | 2.108 | 9.79 | 0.28 | 4.4 | 95.6 | 0.0 | -0.27 | 2.05 | 0.78 | 0.87 | 2.10 | 23286 | 2976 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JD4 | 6633 | 2023-04-26 | 2016-03-28 | 3.4 | 3.40 | — | 3.4 | 0.009 | 0.96 | 0.0 | 0.05 | 10.21 | 0.00 | 2.157 | 15.60 | 0.00 | 6.8 | 93.0 | 0.2 | -4.82 | 0.80 | 0.86 | 3.90 | 3.4 | 0.004 | 0.63 | 0.0 | 0.04 | 15.60 | 0.00 | 2.026 | 11.75 | 0.32 | 3.9 | 96.1 | 0.0 | 0.50 | 0.72 | 0.80 | 0.87 | 2.40 | 24054 | 2982 | 12 | 0 | 18 | 0 | 0 | logfile |
✔ | 3JD2 | 6635 | 2023-04-26 | 2016-03-28 | 3.3 | 2.95 | — | 2.9 | 0.011 | 1.04 | 0.0 | 0.06 | 8.84 | 0.01 | 2.219 | 10.21 | 0.72 | 5.6 | 93.6 | 0.8 | -5.54 | 0.80 | 0.83 | 3.54 | 2.8 | 0.004 | 0.60 | 0.0 | 0.04 | 14.29 | 0.00 | 2.187 | 9.17 | 0.44 | 4.1 | 95.9 | 0.0 | 0.18 | 1.19 | 0.81 | 0.87 | 2.36 | 23814 | 2976 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 3JD3 | 6632 | 2023-04-26 | 2016-03-28 | 3.6 | 3.38 | — | 3.5 | 0.011 | 1.02 | 0.0 | 0.06 | 11.40 | 0.01 | 2.125 | 18.17 | 0.00 | 10.7 | 89.3 | 0.0 | -5.32 | 0.81 | 0.80 | 2.72 | 3.2 | 0.003 | 0.65 | 0.0 | 0.04 | 15.34 | 0.00 | 2.140 | 12.61 | 0.28 | 4.0 | 96.0 | 0.0 | -0.42 | 1.00 | 0.81 | 0.83 | 2.27 | 24006 | 2976 | 12 | 0 | 18 | 0 | 0 | logfile |
✔ | 3JD1 | 6634 | 2023-04-26 | 2016-03-28 | 3.3 | 2.71 | — | 3.0 | 0.015 | 1.01 | 0.0 | 0.06 | 8.10 | 0.01 | 1.935 | 12.60 | 0.00 | 8.2 | 91.6 | 0.2 | -5.08 | 0.79 | 0.80 | 3.01 | 2.5 | 0.004 | 0.68 | 0.0 | 0.04 | 15.21 | 0.00 | 2.159 | 9.66 | 0.28 | 2.8 | 97.2 | 0.0 | 0.47 | 1.81 | 0.80 | 0.85 | 2.00 | 23814 | 2976 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 3JD0 | 6631 | 2023-04-26 | 2016-03-28 | 3.47 | 3.93 | — | 3.8 | 0.012 | 0.82 | 0.0 | 0.05 | 10.31 | 0.00 | 1.989 | 15.40 | 0.00 | 13.3 | 85.9 | 0.8 | -5.89 | 0.85 | 0.82 | 3.48 | 3.8 | 0.004 | 0.70 | 0.0 | 0.04 | 14.28 | 0.00 | 2.128 | 14.60 | 0.16 | 4.9 | 94.9 | 0.1 | 0.69 | 2.53 | 0.85 | 0.86 | 2.35 | 23478 | 2976 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 5J8V | 8073 | 2023-04-27 | 2016-04-08 | 4.9 | 4.81 | — | 4.7 | 0.024 | 2.67 | 214.0 | 0.16 | 10.17 | 0.01 | 1.145 | 73.68 | 28.71 | 6.2 | 86.5 | 7.3 | 2.50 | 0.71 | 0.67 | — | 4.7 | 0.003 | 0.96 | 4.0 | 0.04 | 9.37 | 0.00 | 2.173 | 6.74 | 0.32 | 9.5 | 88.8 | 1.7 | 0.19 | 0.81 | 0.75 | 0.74 | — | 73616 | 13812 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5G2X | 3331 | 2023-04-24 | 2016-04-16 | 3.8 | 3.49 | — | 3.4 | 0.001 | 0.32 | 0.0 | 0.02 | 11.56 | 0.00 | 2.219 | 4.36 | 0.45 | 19.7 | 74.4 | 5.9 | -5.72 | 0.51 | 0.30 | -0.09 | 3.3 | 0.005 | 0.87 | 0.0 | 0.04 | 19.17 | 0.01 | 1.949 | 36.81 | 0.45 | 21.6 | 77.1 | 1.3 | -5.19 | 1.94 | 0.80 | 0.66 | 0.50 | 19072 | 487 | 3 | 704 | 0 | 0 | 0 | logfile |
✔ | 5G2Y | 3332 | 2023-04-22 | 2016-04-16 | 4.5 | 4.38 | — | 3.8 | 0.001 | 0.22 | 0.0 | 0.01 | 11.90 | 0.00 | 2.269 | 2.32 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.58 | 0.28 | — | 3.7 | 0.007 | 1.02 | 0.0 | 0.05 | 23.60 | 0.01 | 1.933 | 73.59 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.96 | 0.89 | 0.78 | — | 13494 | 0 | 1 | 630 | 0 | 0 | 0 | logfile |