Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	4Ui9	2924	2022-07-04	2015-03-27	3.6	3.87	—	3.6	0.016	1.97	124.0	0.11	17.96	0.01	0.849	20.05	11.86	5.3	92.8	1.9	-1.90	0.85	0.73	1.60	3.6	0.005	0.86	0.0	0.04	17.12	0.00	2.077	16.87	0.37	5.9	93.7	0.4	0.78	3.18	0.89	0.84	1.18	66453	8472	25	0	5	0	0	logfile
✔	3J9Z	6315	2022-07-11	2015-03-27	3.6	3.80	—	3.7	0.017	2.31	171.0	0.16	18.21	0.04	2.267	1.82	3.84	7.6	89.1	3.3	-2.82	0.56	0.39	0.14	3.7	0.004	0.75	0.0	0.04	16.94	0.01	1.973	17.63	1.04	9.2	90.2	0.6	-2.13	2.20	0.84	0.83	1.02	156714	7125	59	4717	1	0	0	logfile
✔	4UiS	2974	2022-07-03	2015-04-03	4.4	4.48	—	4.4	0.009	1.29	0.0	0.06	9.92	0.01	1.546	24.94	1.19	7.7	87.4	5.0	-2.00	0.50	0.56	—	4.4	0.005	0.88	0.0	0.04	12.36	0.00	2.096	19.74	0.00	11.4	87.2	1.3	-1.82	1.65	0.55	0.74	—	8518	791	5	0	458	0	0	logfile
✔	3JA7	6324	2022-07-07	2015-04-21	3.6	3.71	—	3.7	0.010	1.53	0.0	0.06	15.94	0.01	1.528	38.36	10.44	11.0	86.8	2.1	-4.92	0.77	0.82	1.86	3.7	0.004	0.81	0.0	0.04	16.12	0.01	2.228	10.40	0.46	5.2	94.1	0.7	-1.18	1.71	0.77	0.81	1.44	41280	5136	12	0	0	0	0	logfile
✔	5A0Q	2981	2022-07-07	2015-04-22	3.5	3.34	—	3.3	0.019	2.22	14.0	0.11	15.42	0.02	0.702	33.84	1.99	4.5	95.1	0.4	-3.18	0.60	0.61	1.82	3.3	0.017	1.21	1.0	0.05	17.72	0.01	1.599	25.26	0.26	4.5	95.4	0.1	-1.74	0.93	0.64	0.64	0.94	43448	5582	34	0	6	0	0	logfile
✘	5A1A	2984	2022-07-06	2015-04-29	2.2	2.04	2.58	2.5	0.008	1.21	0.0	0.04	13.01	0.01	0.020	14.28	1.03	3.9	95.5	0.6	-1.86	0.53	0.76	4.20	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	33696	4088	12	0	20	776	0	logfile
✔	5A22	6337	2022-07-06	2015-05-06	3.8	4.20	—	4.2	0.009	1.49	0.0	0.06	15.75	0.01	2.014	14.23	5.57	13.9	84.2	2.0	-5.08	0.72	0.82	1.68	4.1	0.011	1.07	1.0	0.04	16.85	0.01	1.842	19.64	0.89	13.6	85.3	1.1	-1.79	2.67	0.69	0.76	1.46	32187	2002	1	0	2	0	16110	logfile
✔	3JA8	6338	2022-07-06	2015-05-09	3.8	3.83	—	3.8	0.014	1.56	0.0	0.06	10.98	0.01	1.749	29.26	0.37	7.9	91.0	1.1	-4.26	0.68	0.80	2.30	3.8	0.006	1.15	0.0	0.05	15.57	0.01	1.684	19.23	0.18	9.1	90.0	0.9	-1.70	1.57	0.68	0.79	1.42	29838	3786	12	0	6	0	0	logfile
✔	5A2Q	3019	2022-07-05	2015-05-21	3.9	4.01	—	3.9	0.008	1.23	0.0	0.05	19.81	0.01	1.830	13.41	12.93	4.3	95.5	0.2	-3.44	0.89	0.88	1.18	3.9	0.007	0.82	1.0	0.04	18.72	0.01	1.781	16.57	0.42	5.4	94.5	0.1	-0.33	1.58	0.86	0.82	1.13	80749	4931	45	1922	115	144	0	logfile
✔	3JAC	6343	2022-07-04	2015-06-05	4.8	6.42	—	9.4	0.007	1.81	3.0	0.07	10.64	0.03	1.020	57.64	4.17	5.0	90.3	4.8	1.36	0.42	0.40	—	9.1	0.012	1.72	0.0	0.06	13.52	0.01	1.934	77.83	0.00	26.2	72.4	1.4	-5.34	3.68	0.54	0.61	—	15741	1716	3	0	1038	0	0	logfile
✔	3JAE	6345	2022-07-03	2015-06-08	3.9	2.88	—	3.5	0.006	1.25	0.0	0.05	9.25	0.01	2.202	13.89	0.00	0.9	99.1	0.0	-1.69	0.70	0.74	1.87	3.2	0.003	0.85	0.0	0.04	13.60	0.00	2.000	16.30	0.08	2.9	97.1	0.0	0.14	1.48	0.72	0.82	1.52	12825	1690	10	0	10	0	0	logfile
✔	3JAD	6344	2022-07-03	2015-06-08	3.9	2.16	—	3.8	0.008	1.32	0.0	0.06	8.46	0.00	2.250	17.07	0.43	2.7	97.3	0.0	-2.13	0.68	0.72	0.33	2.6	0.004	0.77	0.0	0.04	13.18	0.00	2.164	20.53	0.26	4.5	95.5	0.0	0.02	1.23	0.70	0.78	0.68	12705	1685	10	0	15	0	0	logfile
✘	3JAF	6346	2022-07-04	2015-06-08	3.8	2.26	—	3.8	0.005	1.27	0.0	0.05	9.45	0.01	1.220	19.02	0.70	0.6	99.4	0.0	-0.82	0.69	0.71	1.52	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13865	1710	10	0	15	0	0	logfile
✔	3JAL	6350	2022-07-07	2015-06-16	3.5	3.70	—	3.6	0.009	1.46	5.0	0.08	15.76	0.01	1.948	1.69	1.21	2.9	97.0	0.1	0.16	0.68	0.86	2.81	3.6	0.003	0.62	0.0	0.04	16.99	0.00	1.904	7.38	0.19	2.3	97.7	0.0	0.93	0.79	0.66	0.86	2.63	43012	5428	26	0	18	0	0	logfile
✔	3JAK	6349	2022-07-07	2015-06-16	3.3	3.49	—	3.6	0.009	1.40	0.0	0.08	15.62	0.01	2.010	2.33	1.12	2.2	97.7	0.1	0.27	0.64	0.85	2.90	3.5	0.003	0.60	0.0	0.04	16.63	0.00	1.918	6.11	0.26	2.0	98.0	0.0	0.96	0.73	0.61	0.87	2.62	43066	5428	26	0	18	0	0	logfile
✔	3JAM	3047	2022-07-05	2015-06-17	3.46	3.54	3.52	3.5	0.007	1.32	63.0	0.10	21.31	0.01	1.398	7.24	13.45	10.2	86.0	3.8	-1.98	0.64	0.83	1.53	3.5	0.007	0.84	0.0	0.04	19.61	0.01	1.524	14.93	0.35	9.6	89.1	1.3	-1.13	0.66	0.66	0.85	1.68	77850	5056	42	1780	83	0	0	logfile
✔	3JAP	3048	2022-07-06	2015-06-18	4.9	5.03	5.08	5.0	0.007	1.39	79.0	0.11	22.42	0.01	1.307	9.55	13.17	10.9	85.8	3.4	-1.68	0.68	0.69	—	4.9	0.004	0.80	0.0	0.04	19.12	0.01	1.219	25.22	0.03	10.0	89.2	0.8	-1.85	2.20	0.72	0.80	—	98333	7272	53	1869	255	0	0	logfile
✔	3JAR	6351	2022-07-07	2015-06-19	3.4	3.64	—	3.6	0.008	1.38	6.0	0.08	16.19	0.01	1.923	1.68	1.82	2.6	97.2	0.2	0.27	0.69	0.87	3.14	3.6	0.003	0.60	0.0	0.04	16.70	0.00	1.903	6.34	0.13	2.0	98.0	0.0	0.82	1.52	0.66	0.88	2.67	43024	5428	26	6	12	0	0	logfile
✔	3JAS	6353	2022-07-07	2015-06-19	3.5	3.68	—	3.7	0.008	1.46	6.0	0.08	16.41	0.01	1.846	3.52	2.07	3.1	96.8	0.1	0.41	0.64	0.85	2.90	3.6	0.003	0.62	0.0	0.04	17.07	0.00	1.982	8.08	0.23	2.6	97.4	0.0	1.16	0.77	0.60	0.84	2.46	40506	5124	24	6	12	0	0	logfile
✔	3JAT	6352	2022-07-07	2015-06-20	3.5	3.68	—	3.7	0.009	1.54	12.0	0.09	16.21	0.01	1.855	1.71	0.55	3.1	96.8	0.1	0.14	0.64	0.82	2.93	3.7	0.004	0.63	0.0	0.04	17.24	0.00	1.850	8.29	0.25	2.5	97.5	0.0	0.90	0.77	0.63	0.85	2.28	40500	5124	24	0	24	0	0	logfile

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