Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	5AJ0	2875	2022-04-21	2015-02-19	3.5	11.12	—	—	0.011	1.61	31.0	0.09	16.14	0.01	0.414	42.84	8.00	5.7	89.8	4.5	0.77	0.00	0.00	0.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	218559	11738	106	5776	355	0	0	logfile
✔	5AJ4	2914	2022-04-11	2015-02-20	3.8	3.91	—	3.8	0.014	1.27	0.0	0.05	18.99	0.01	1.717	18.69	11.32	4.3	95.6	0.1	-3.30	0.87	0.85	1.24	3.8	0.009	0.88	5.0	0.04	18.66	0.01	1.080	21.51	0.26	4.6	95.3	0.1	-0.33	1.59	0.85	0.79	1.19	167915	12874	119	2678	1357	340	0	logfile
✔	5AJ3	2913	2022-04-05	2015-02-20	3.6	3.73	—	3.7	0.018	1.27	0.0	0.05	18.73	0.01	1.844	23.99	10.71	3.9	96.0	0.1	-3.65	0.86	0.86	2.03	3.6	0.003	0.69	0.0	0.04	18.11	0.01	1.877	14.52	0.44	4.3	95.7	0.0	0.20	1.61	0.84	0.82	1.68	66363	4665	44	1102	1006	118	0	logfile
✔	3J9W	6306	2022-04-08	2015-03-16	3.9	3.93	—	3.8	0.010	1.50	0.0	0.03	15.63	0.02	1.433	8.85	0.26	6.0	92.0	2.0	-1.66	0.74	0.72	0.72	3.8	0.005	0.78	0.0	0.04	17.69	0.01	2.004	20.54	1.64	8.4	91.0	0.6	-0.70	1.35	0.80	0.85	1.39	135425	5661	54	4675	0	0	0	logfile
✔	4UFT	2867	2022-04-06	2015-03-19	4.3	4.24	—	4.2	0.005	0.95	0.0	0.05	11.26	0.00	1.169	8.53	0.31	13.2	83.9	3.0	-4.63	0.54	0.70	—	4.2	0.004	0.76	0.0	0.04	13.30	0.00	2.154	10.70	0.06	7.9	91.0	1.0	-2.63	1.91	0.58	0.77	—	119847	14703	78	234	0	0	0	logfile
✔	4UG0	2938	2022-04-21	2015-03-20	3.6	3.15	—	3.1	0.005	0.88	0.0	0.04	16.76	0.00	1.818	14.69	0.04	11.7	83.3	5.0	-2.77	0.59	0.70	2.13	3.1	0.005	0.82	2.0	0.04	18.30	0.01	1.796	17.17	0.85	12.7	86.3	1.0	-3.08	0.55	0.58	0.68	1.45	218776	11675	102	5869	245	0	0	logfile
✔	3J9X	6310	2022-04-06	2015-03-21	3.8	3.84	—	3.8	0.014	1.24	0.0	0.08	13.09	0.02	2.369	3.42	0.48	2.8	95.6	1.6	-0.65	0.51	0.57	0.47	3.8	0.005	0.78	0.0	0.04	16.13	0.01	2.080	20.92	0.59	2.5	97.5	0.0	1.88	1.09	0.62	0.77	1.97	70702	7424	60	696	0	0	0	logfile
✔	3J9Y	6311	2022-04-12	2015-03-23	3.9	3.83	—	3.9	0.006	0.84	0.0	0.04	15.12	0.02	0.974	10.29	3.21	10.9	85.6	3.4	-3.83	0.76	0.77	0.68	3.7	0.008	0.90	0.0	0.04	16.14	0.01	1.531	23.19	0.60	9.9	89.3	0.8	-2.10	0.97	0.79	0.83	0.80	148915	6657	58	4645	0	0	0	logfile
✔	4Ui9	2924	2022-04-05	2015-03-27	3.6	3.87	—	3.6	0.016	1.97	124.0	0.11	17.96	0.01	0.849	19.92	11.86	5.3	92.8	1.9	-1.90	0.85	0.73	1.60	3.6	0.005	0.86	0.0	0.04	17.12	0.00	2.077	16.62	0.37	5.9	93.7	0.4	0.78	3.18	0.89	0.84	1.18	66453	8472	25	0	5	0	0	logfile
✔	3J9Z	6315	2022-04-16	2015-03-27	3.6	3.80	—	3.7	0.017	2.31	171.0	0.16	18.21	0.04	2.267	1.72	3.84	7.6	89.1	3.3	-2.82	0.56	0.39	0.14	3.7	0.003	0.72	0.0	0.04	16.87	0.01	1.985	16.97	0.79	9.1	90.4	0.6	-2.02	2.20	0.84	0.82	0.86	156714	7125	59	4717	1	0	0	logfile
✔	4UiS	2974	2022-04-05	2015-04-03	4.4	4.48	—	4.4	0.009	1.29	0.0	0.06	9.92	0.01	1.546	24.94	1.19	7.7	87.4	5.0	-2.00	0.50	0.56	—	4.4	0.005	0.88	0.0	0.04	12.36	0.00	2.096	19.74	0.00	11.4	87.2	1.3	-1.82	1.65	0.55	0.74	—	8518	791	5	0	458	0	0	logfile
✔	3JA7	6324	2022-04-09	2015-04-21	3.6	3.71	—	3.7	0.010	1.53	0.0	0.06	15.94	0.01	1.528	38.21	10.44	11.0	86.8	2.1	-4.92	0.77	0.82	1.86	3.7	0.004	0.81	0.0	0.04	16.12	0.01	2.228	9.96	0.46	5.2	94.1	0.7	-1.18	1.71	0.77	0.81	1.44	41280	5136	12	0	0	0	0	logfile
✔	5A0Q	2981	2022-04-09	2015-04-22	3.5	3.34	—	3.3	0.019	2.22	14.0	0.11	15.42	0.02	0.702	33.73	1.99	4.5	95.1	0.4	-3.18	0.60	0.61	1.82	3.3	0.017	1.21	1.0	0.05	17.72	0.01	1.599	25.25	0.26	4.5	95.4	0.1	-1.74	0.93	0.64	0.64	0.94	43448	5582	34	0	6	0	0	logfile
✔	5A1A	2984	2022-04-08	2015-04-29	2.2	2.04	2.58	2.5	0.009	1.21	0.0	0.04	13.14	0.01	0.020	14.13	1.03	3.9	95.5	0.6	-1.86	0.53	0.76	4.20	2.5	0.005	0.78	0.0	0.05	17.68	0.01	1.924	12.32	3.18	3.0	96.9	0.1	-0.70	0.61	0.54	0.79	3.98	33696	4088	12	0	20	776	0	logfile
✔	5A22	6337	2022-04-08	2015-05-06	3.8	4.20	—	4.2	0.009	1.49	0.0	0.06	15.75	0.01	2.014	14.01	5.57	13.9	84.2	2.0	-5.08	0.72	0.82	1.68	4.1	0.011	1.07	1.0	0.04	16.85	0.01	1.842	19.42	0.89	13.6	85.3	1.1	-1.79	2.67	0.69	0.76	1.46	32187	2002	1	0	2	0	16110	logfile
✔	3JA8	6338	2022-04-07	2015-05-09	3.8	3.83	—	3.8	0.014	1.56	0.0	0.06	10.98	0.01	1.749	29.21	0.37	7.9	91.0	1.1	-4.26	0.68	0.80	2.30	3.8	0.006	1.15	0.0	0.05	15.57	0.01	1.684	19.13	0.18	9.1	90.0	0.9	-1.70	1.57	0.68	0.79	1.42	29838	3786	12	0	6	0	0	logfile
✔	5A2Q	3019	2022-04-07	2015-05-21	3.9	4.01	—	3.9	0.008	1.23	0.0	0.05	19.81	0.01	1.830	13.34	12.93	4.3	95.5	0.2	-3.44	0.89	0.88	1.18	3.9	0.007	0.82	1.0	0.04	18.72	0.01	1.781	16.45	0.42	5.4	94.5	0.1	-0.33	1.58	0.86	0.82	1.13	80749	4931	45	1922	115	144	0	logfile
✔	3JAC	6343	2022-04-05	2015-06-05	4.8	6.42	—	9.4	0.007	1.81	3.0	0.07	10.64	0.03	1.020	57.64	4.17	5.0	90.3	4.8	1.36	0.42	0.40	—	9.1	0.012	1.72	0.0	0.06	13.52	0.01	1.934	77.71	0.00	26.2	72.4	1.4	-5.34	3.68	0.54	0.61	—	15741	1716	3	0	1038	0	0	logfile
✔	3JAF	6346	2022-04-05	2015-06-08	3.8	2.26	—	3.8	0.025	1.93	0.0	0.10	10.09	0.01	2.134	18.84	0.70	0.6	99.4	0.0	-0.82	0.69	0.71	1.52	3.8	0.003	1.04	0.0	0.04	14.08	0.00	2.196	19.54	0.28	2.6	97.4	0.0	0.57	1.36	0.72	0.81	1.50	13865	1710	10	0	15	0	0	logfile
✔	3JAE	6345	2022-04-05	2015-06-08	3.9	2.88	—	3.5	0.006	1.25	0.0	0.05	9.25	0.01	2.202	13.69	0.00	0.9	99.1	0.0	-1.69	0.70	0.74	1.87	3.2	0.003	0.85	0.0	0.04	13.60	0.00	2.000	15.94	0.08	2.9	97.1	0.0	0.14	1.48	0.72	0.82	1.52	12825	1690	10	0	10	0	0	logfile

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