Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3JAL	6350	2022-12-21	2015-06-16	3.5	3.70	—	3.6	0.009	1.46	5.0	0.08	15.76	0.01	1.948	1.69	1.21	2.9	97.0	0.1	0.16	0.68	0.86	2.81	3.6	0.004	0.65	0.0	0.04	17.02	0.00	1.900	7.75	0.26	2.3	97.7	0.0	0.69	0.79	0.66	0.87	2.55	43012	5428	26	0	18	0	0	logfile
✔	3JAM	3047	2022-12-15	2015-06-17	3.46	3.54	3.52	3.5	0.007	1.32	63.0	0.10	21.31	0.01	1.398	7.24	13.45	10.2	86.0	3.8	-1.98	0.64	0.83	1.53	3.5	0.004	0.72	0.0	0.04	19.38	0.01	1.863	12.97	0.65	9.3	89.5	1.1	-1.00	0.72	0.67	0.86	1.64	77850	5056	42	1780	83	0	0	logfile
✔	3JAP	3048	2022-12-17	2015-06-18	4.9	5.03	5.08	5.0	0.007	1.39	79.0	0.11	22.42	0.01	1.307	9.55	13.17	10.9	85.8	3.4	-1.68	0.68	0.69	—	4.9	0.003	0.75	0.0	0.04	18.86	0.01	1.298	21.68	0.03	9.5	89.6	0.8	-1.51	2.18	0.71	0.80	—	98333	7272	53	1869	255	0	0	logfile
✔	3JAR	6351	2022-12-21	2015-06-19	3.4	3.64	—	3.6	0.008	1.38	6.0	0.08	16.19	0.01	1.923	1.68	1.82	2.6	97.2	0.2	0.27	0.69	0.87	3.14	3.6	0.003	0.59	0.0	0.04	16.69	0.00	1.907	6.21	0.11	2.1	97.9	0.0	0.87	1.52	0.65	0.88	2.66	43024	5428	26	6	12	0	0	logfile
✔	3JAS	6353	2022-12-20	2015-06-19	3.5	3.68	—	3.7	0.008	1.46	6.0	0.08	16.41	0.01	1.846	3.52	2.07	3.1	96.8	0.1	0.41	0.64	0.85	2.90	3.6	0.003	0.61	0.0	0.04	17.03	0.00	1.977	8.03	0.21	2.7	97.3	0.0	1.21	0.77	0.60	0.84	2.44	40506	5124	24	6	12	0	0	logfile
✔	3JAT	6352	2022-12-20	2015-06-20	3.5	3.68	—	3.7	0.009	1.54	12.0	0.09	16.21	0.01	1.855	1.71	0.55	3.1	96.8	0.1	0.14	0.64	0.82	2.93	3.7	0.004	0.63	0.0	0.04	17.24	0.00	1.850	8.29	0.25	2.5	97.5	0.0	0.90	0.77	0.63	0.85	2.28	40500	5124	24	0	24	0	0	logfile
✔	5A63	3061	2022-12-12	2015-06-24	3.4	3.50	3.42	3.5	0.010	1.68	8.0	0.11	19.25	0.01	2.079	39.51	13.74	6.4	91.5	2.1	-0.17	0.36	0.40	2.09	3.5	0.003	0.73	0.0	0.04	17.91	0.00	2.229	12.49	0.57	4.8	94.8	0.4	0.18	3.22	0.62	0.81	1.66	10003	1223	13	0	22	0	0	logfile
✔	5A6E	3062	2022-12-12	2015-06-25	4.5	6.76	—	5.1	0.010	3.73	0.0	0.05	15.55	0.01	2.112	8.77	3.19	11.1	88.8	0.2	-5.00	0.36	0.56	—	4.8	0.003	0.58	0.0	0.03	10.50	0.00	1.994	10.27	0.00	6.4	93.6	0.0	-0.83	1.50	0.40	0.73	—	11093	634	4	0	182	0	5102	logfile
✔	5A6F	3063	2022-12-12	2015-06-25	4.2	5.75	—	5.0	0.012	1.50	0.0	0.05	12.32	0.01	2.112	10.08	3.74	12.2	87.6	0.2	-4.94	0.56	0.74	—	4.7	0.002	0.57	0.0	0.04	10.94	0.00	2.010	10.19	0.00	5.1	94.9	0.0	-1.00	0.99	0.57	0.75	—	8881	540	2	0	43	0	4330	logfile
✘	5A7U	3079	2022-12-18	2015-07-10	4.8	3.82	—	4.6	0.020	3.41	3.0	0.25	21.78	0.08	2.651	30.77	25.00	24.0	72.0	4.0	-6.05	-0.01	0.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	455	27	1	0	1	0	231	logfile
✔	5A8L	3099	2022-12-12	2015-07-16	3.8	3.60	—	3.5	0.004	0.67	0.0	0.02	12.36	0.00	1.435	9.01	0.95	10.3	86.8	2.9	-2.06	0.18	0.43	0.47	3.5	0.006	0.97	0.0	0.05	17.64	0.01	1.991	23.78	0.57	11.9	87.0	1.1	-2.68	1.53	0.23	0.63	0.73	12264	624	9	347	0	0	0	logfile
✔	3JB6	6408	2022-12-13	2015-08-02	3.3	3.35	—	3.4	0.010	0.90	4.0	0.06	9.55	0.01	2.123	8.54	0.20	2.4	97.4	0.1	-3.72	0.63	0.90	5.02	3.4	0.002	0.58	0.0	0.04	15.00	0.00	2.179	6.12	0.33	1.8	98.2	0.0	0.05	1.20	0.62	0.88	3.54	13904	1731	6	0	2	0	0	logfile
✔	3JB7	6404	2022-12-13	2015-08-03	4.0	4.13	—	4.1	0.007	0.76	3.0	0.05	10.78	0.00	0.793	10.69	1.13	3.9	95.9	0.2	-2.17	0.76	0.85	—	4.1	0.003	0.69	0.0	0.04	15.23	0.00	2.108	11.23	0.60	2.8	97.1	0.1	0.12	0.87	0.78	0.85	—	14176	1733	8	11	3	0	0	logfile
✘	3JB9	6413	2022-12-19	2015-08-09	3.6	3.70	—	3.6	0.010	1.29	13.0	0.07	16.84	0.01	1.253	18.11	8.06	9.1	87.9	3.0	-3.97	0.52	0.51	1.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	86551	9194	50	328	1328	0	0	logfile
✔	5ACo	3121	2022-12-14	2015-08-17	4.36	4.52	—	4.3	0.012	1.91	3.0	0.11	10.21	0.02	1.986	10.87	0.29	9.1	88.9	1.9	-2.40	0.70	0.68	—	4.3	0.005	0.79	0.0	0.05	11.29	0.00	2.136	13.50	0.00	7.9	91.5	0.6	-1.09	1.61	0.82	0.84	—	21297	2415	69	0	192	0	0	logfile
✔	5ADX	2856	2022-12-22	2015-08-24	4.0	4.18	—	4.0	0.008	1.05	1.0	0.06	12.82	0.00	1.155	3.45	1.97	6.3	93.5	0.3	-2.81	0.77	0.63	—	4.0	0.004	0.71	0.0	0.04	14.81	0.00	2.081	12.00	0.29	5.6	94.4	0.0	-0.57	0.91	0.86	0.79	—	49392	4737	27	0	2569	0	0	logfile
✔	5ADY	3133	2022-12-17	2015-08-25	4.5	4.75	—	4.5	0.011	1.28	0.0	0.06	18.75	0.01	1.391	57.97	0.21	11.7	81.7	6.7	-3.35	0.72	0.63	—	4.5	0.005	0.78	0.0	0.04	17.45	0.01	1.818	31.60	0.00	13.3	85.6	1.1	-3.13	1.12	0.87	0.84	—	97364	4197	35	3020	2	0	0	logfile
✔	5AN9	3145	2022-12-20	2015-09-06	3.3	3.29	—	3.3	0.007	1.22	5.0	0.10	17.04	0.01	1.192	3.57	2.32	9.1	88.0	2.9	-3.68	0.38	0.81	1.98	3.3	0.007	0.87	0.0	0.05	17.57	0.01	2.003	13.84	1.16	11.8	87.5	0.6	-2.88	1.53	0.40	0.81	1.34	39693	1905	11	1162	0	0	0	logfile
✔	5ANC	3147	2022-12-21	2015-09-06	4.2	4.23	—	4.2	0.008	1.35	7.0	0.10	19.00	0.01	1.236	6.63	4.21	13.6	82.7	3.6	-4.33	0.41	0.74	—	4.2	0.004	0.83	0.0	0.04	17.25	0.01	2.031	20.61	0.00	14.5	84.5	1.0	-3.66	1.57	0.39	0.70	—	46807	2801	11	1162	0	0	0	logfile
✔	5ANB	3146	2022-12-22	2015-09-06	4.1	4.11	—	4.1	0.008	1.31	6.0	0.10	18.54	0.01	1.245	5.13	4.33	13.0	83.9	3.1	-4.17	0.41	0.75	—	4.0	0.004	0.83	0.0	0.04	17.28	0.01	2.089	19.99	0.04	13.7	85.6	0.7	-3.60	0.89	0.40	0.72	—	48493	3025	12	1162	0	0	0	logfile

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