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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5AJ0 | 2875 | 2022-04-21 | 2015-02-19 | 3.5 | 11.12 | — | — | 0.011 | 1.61 | 31.0 | 0.09 | 16.14 | 0.01 | 0.414 | 42.84 | 8.00 | 5.7 | 89.8 | 4.5 | 0.77 | 0.00 | 0.00 | 0.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 218559 | 11738 | 106 | 5776 | 355 | 0 | 0 | logfile |
✔ | 5AJ4 | 2914 | 2022-04-11 | 2015-02-20 | 3.8 | 3.91 | — | 3.8 | 0.014 | 1.27 | 0.0 | 0.05 | 18.99 | 0.01 | 1.717 | 18.69 | 11.32 | 4.3 | 95.6 | 0.1 | -3.30 | 0.87 | 0.85 | 1.24 | 3.8 | 0.009 | 0.88 | 5.0 | 0.04 | 18.66 | 0.01 | 1.080 | 21.51 | 0.26 | 4.6 | 95.3 | 0.1 | -0.33 | 1.59 | 0.85 | 0.79 | 1.19 | 167915 | 12874 | 119 | 2678 | 1357 | 340 | 0 | logfile |
✔ | 5AJ3 | 2913 | 2022-04-05 | 2015-02-20 | 3.6 | 3.73 | — | 3.7 | 0.018 | 1.27 | 0.0 | 0.05 | 18.73 | 0.01 | 1.844 | 23.99 | 10.71 | 3.9 | 96.0 | 0.1 | -3.65 | 0.86 | 0.86 | 2.03 | 3.6 | 0.003 | 0.69 | 0.0 | 0.04 | 18.11 | 0.01 | 1.877 | 14.52 | 0.44 | 4.3 | 95.7 | 0.0 | 0.20 | 1.61 | 0.84 | 0.82 | 1.68 | 66363 | 4665 | 44 | 1102 | 1006 | 118 | 0 | logfile |
✔ | 3J9W | 6306 | 2022-04-08 | 2015-03-16 | 3.9 | 3.93 | — | 3.8 | 0.010 | 1.50 | 0.0 | 0.03 | 15.63 | 0.02 | 1.433 | 8.85 | 0.26 | 6.0 | 92.0 | 2.0 | -1.66 | 0.74 | 0.72 | 0.72 | 3.8 | 0.005 | 0.78 | 0.0 | 0.04 | 17.69 | 0.01 | 2.004 | 20.54 | 1.64 | 8.4 | 91.0 | 0.6 | -0.70 | 1.35 | 0.80 | 0.85 | 1.39 | 135425 | 5661 | 54 | 4675 | 0 | 0 | 0 | logfile |
✔ | 4UFT | 2867 | 2022-04-06 | 2015-03-19 | 4.3 | 4.24 | — | 4.2 | 0.005 | 0.95 | 0.0 | 0.05 | 11.26 | 0.00 | 1.169 | 8.53 | 0.31 | 13.2 | 83.9 | 3.0 | -4.63 | 0.54 | 0.70 | — | 4.2 | 0.004 | 0.76 | 0.0 | 0.04 | 13.30 | 0.00 | 2.154 | 10.70 | 0.06 | 7.9 | 91.0 | 1.0 | -2.63 | 1.91 | 0.58 | 0.77 | — | 119847 | 14703 | 78 | 234 | 0 | 0 | 0 | logfile |
✔ | 4UG0 | 2938 | 2022-04-21 | 2015-03-20 | 3.6 | 3.15 | — | 3.1 | 0.005 | 0.88 | 0.0 | 0.04 | 16.76 | 0.00 | 1.818 | 14.69 | 0.04 | 11.7 | 83.3 | 5.0 | -2.77 | 0.59 | 0.70 | 2.13 | 3.1 | 0.005 | 0.82 | 2.0 | 0.04 | 18.30 | 0.01 | 1.796 | 17.17 | 0.85 | 12.7 | 86.3 | 1.0 | -3.08 | 0.55 | 0.58 | 0.68 | 1.45 | 218776 | 11675 | 102 | 5869 | 245 | 0 | 0 | logfile |
✔ | 3J9X | 6310 | 2022-04-06 | 2015-03-21 | 3.8 | 3.84 | — | 3.8 | 0.014 | 1.24 | 0.0 | 0.08 | 13.09 | 0.02 | 2.369 | 3.42 | 0.48 | 2.8 | 95.6 | 1.6 | -0.65 | 0.51 | 0.57 | 0.47 | 3.8 | 0.005 | 0.78 | 0.0 | 0.04 | 16.13 | 0.01 | 2.080 | 20.92 | 0.59 | 2.5 | 97.5 | 0.0 | 1.88 | 1.09 | 0.62 | 0.77 | 1.97 | 70702 | 7424 | 60 | 696 | 0 | 0 | 0 | logfile |
✔ | 3J9Y | 6311 | 2022-04-12 | 2015-03-23 | 3.9 | 3.83 | — | 3.9 | 0.006 | 0.84 | 0.0 | 0.04 | 15.12 | 0.02 | 0.974 | 10.29 | 3.21 | 10.9 | 85.6 | 3.4 | -3.83 | 0.76 | 0.77 | 0.68 | 3.7 | 0.008 | 0.90 | 0.0 | 0.04 | 16.14 | 0.01 | 1.531 | 23.19 | 0.60 | 9.9 | 89.3 | 0.8 | -2.10 | 0.97 | 0.79 | 0.83 | 0.80 | 148915 | 6657 | 58 | 4645 | 0 | 0 | 0 | logfile |
✔ | 4Ui9 | 2924 | 2022-04-05 | 2015-03-27 | 3.6 | 3.87 | — | 3.6 | 0.016 | 1.97 | 124.0 | 0.11 | 17.96 | 0.01 | 0.849 | 19.92 | 11.86 | 5.3 | 92.8 | 1.9 | -1.90 | 0.85 | 0.73 | 1.60 | 3.6 | 0.005 | 0.86 | 0.0 | 0.04 | 17.12 | 0.00 | 2.077 | 16.62 | 0.37 | 5.9 | 93.7 | 0.4 | 0.78 | 3.18 | 0.89 | 0.84 | 1.18 | 66453 | 8472 | 25 | 0 | 5 | 0 | 0 | logfile |
✔ | 3J9Z | 6315 | 2022-04-16 | 2015-03-27 | 3.6 | 3.80 | — | 3.7 | 0.017 | 2.31 | 171.0 | 0.16 | 18.21 | 0.04 | 2.267 | 1.72 | 3.84 | 7.6 | 89.1 | 3.3 | -2.82 | 0.56 | 0.39 | 0.14 | 3.7 | 0.003 | 0.72 | 0.0 | 0.04 | 16.87 | 0.01 | 1.985 | 16.97 | 0.79 | 9.1 | 90.4 | 0.6 | -2.02 | 2.20 | 0.84 | 0.82 | 0.86 | 156714 | 7125 | 59 | 4717 | 1 | 0 | 0 | logfile |
✔ | 4UiS | 2974 | 2022-04-05 | 2015-04-03 | 4.4 | 4.48 | — | 4.4 | 0.009 | 1.29 | 0.0 | 0.06 | 9.92 | 0.01 | 1.546 | 24.94 | 1.19 | 7.7 | 87.4 | 5.0 | -2.00 | 0.50 | 0.56 | — | 4.4 | 0.005 | 0.88 | 0.0 | 0.04 | 12.36 | 0.00 | 2.096 | 19.74 | 0.00 | 11.4 | 87.2 | 1.3 | -1.82 | 1.65 | 0.55 | 0.74 | — | 8518 | 791 | 5 | 0 | 458 | 0 | 0 | logfile |
✔ | 3JA7 | 6324 | 2022-04-09 | 2015-04-21 | 3.6 | 3.71 | — | 3.7 | 0.010 | 1.53 | 0.0 | 0.06 | 15.94 | 0.01 | 1.528 | 38.21 | 10.44 | 11.0 | 86.8 | 2.1 | -4.92 | 0.77 | 0.82 | 1.86 | 3.7 | 0.004 | 0.81 | 0.0 | 0.04 | 16.12 | 0.01 | 2.228 | 9.96 | 0.46 | 5.2 | 94.1 | 0.7 | -1.18 | 1.71 | 0.77 | 0.81 | 1.44 | 41280 | 5136 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 5A0Q | 2981 | 2022-04-09 | 2015-04-22 | 3.5 | 3.34 | — | 3.3 | 0.019 | 2.22 | 14.0 | 0.11 | 15.42 | 0.02 | 0.702 | 33.73 | 1.99 | 4.5 | 95.1 | 0.4 | -3.18 | 0.60 | 0.61 | 1.82 | 3.3 | 0.017 | 1.21 | 1.0 | 0.05 | 17.72 | 0.01 | 1.599 | 25.25 | 0.26 | 4.5 | 95.4 | 0.1 | -1.74 | 0.93 | 0.64 | 0.64 | 0.94 | 43448 | 5582 | 34 | 0 | 6 | 0 | 0 | logfile |
✔ | 5A1A | 2984 | 2022-04-08 | 2015-04-29 | 2.2 | 2.04 | 2.58 | 2.5 | 0.009 | 1.21 | 0.0 | 0.04 | 13.14 | 0.01 | 0.020 | 14.13 | 1.03 | 3.9 | 95.5 | 0.6 | -1.86 | 0.53 | 0.76 | 4.20 | 2.5 | 0.005 | 0.78 | 0.0 | 0.05 | 17.68 | 0.01 | 1.924 | 12.32 | 3.18 | 3.0 | 96.9 | 0.1 | -0.70 | 0.61 | 0.54 | 0.79 | 3.98 | 33696 | 4088 | 12 | 0 | 20 | 776 | 0 | logfile |
✔ | 5A22 | 6337 | 2022-04-08 | 2015-05-06 | 3.8 | 4.20 | — | 4.2 | 0.009 | 1.49 | 0.0 | 0.06 | 15.75 | 0.01 | 2.014 | 14.01 | 5.57 | 13.9 | 84.2 | 2.0 | -5.08 | 0.72 | 0.82 | 1.68 | 4.1 | 0.011 | 1.07 | 1.0 | 0.04 | 16.85 | 0.01 | 1.842 | 19.42 | 0.89 | 13.6 | 85.3 | 1.1 | -1.79 | 2.67 | 0.69 | 0.76 | 1.46 | 32187 | 2002 | 1 | 0 | 2 | 0 | 16110 | logfile |
✔ | 3JA8 | 6338 | 2022-04-07 | 2015-05-09 | 3.8 | 3.83 | — | 3.8 | 0.014 | 1.56 | 0.0 | 0.06 | 10.98 | 0.01 | 1.749 | 29.21 | 0.37 | 7.9 | 91.0 | 1.1 | -4.26 | 0.68 | 0.80 | 2.30 | 3.8 | 0.006 | 1.15 | 0.0 | 0.05 | 15.57 | 0.01 | 1.684 | 19.13 | 0.18 | 9.1 | 90.0 | 0.9 | -1.70 | 1.57 | 0.68 | 0.79 | 1.42 | 29838 | 3786 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 5A2Q | 3019 | 2022-04-07 | 2015-05-21 | 3.9 | 4.01 | — | 3.9 | 0.008 | 1.23 | 0.0 | 0.05 | 19.81 | 0.01 | 1.830 | 13.34 | 12.93 | 4.3 | 95.5 | 0.2 | -3.44 | 0.89 | 0.88 | 1.18 | 3.9 | 0.007 | 0.82 | 1.0 | 0.04 | 18.72 | 0.01 | 1.781 | 16.45 | 0.42 | 5.4 | 94.5 | 0.1 | -0.33 | 1.58 | 0.86 | 0.82 | 1.13 | 80749 | 4931 | 45 | 1922 | 115 | 144 | 0 | logfile |
✔ | 3JAC | 6343 | 2022-04-05 | 2015-06-05 | 4.8 | 6.42 | — | 9.4 | 0.007 | 1.81 | 3.0 | 0.07 | 10.64 | 0.03 | 1.020 | 57.64 | 4.17 | 5.0 | 90.3 | 4.8 | 1.36 | 0.42 | 0.40 | — | 9.1 | 0.012 | 1.72 | 0.0 | 0.06 | 13.52 | 0.01 | 1.934 | 77.71 | 0.00 | 26.2 | 72.4 | 1.4 | -5.34 | 3.68 | 0.54 | 0.61 | — | 15741 | 1716 | 3 | 0 | 1038 | 0 | 0 | logfile |
✔ | 3JAF | 6346 | 2022-04-05 | 2015-06-08 | 3.8 | 2.26 | — | 3.8 | 0.025 | 1.93 | 0.0 | 0.10 | 10.09 | 0.01 | 2.134 | 18.84 | 0.70 | 0.6 | 99.4 | 0.0 | -0.82 | 0.69 | 0.71 | 1.52 | 3.8 | 0.003 | 1.04 | 0.0 | 0.04 | 14.08 | 0.00 | 2.196 | 19.54 | 0.28 | 2.6 | 97.4 | 0.0 | 0.57 | 1.36 | 0.72 | 0.81 | 1.50 | 13865 | 1710 | 10 | 0 | 15 | 0 | 0 | logfile |
✔ | 3JAE | 6345 | 2022-04-05 | 2015-06-08 | 3.9 | 2.88 | — | 3.5 | 0.006 | 1.25 | 0.0 | 0.05 | 9.25 | 0.01 | 2.202 | 13.69 | 0.00 | 0.9 | 99.1 | 0.0 | -1.69 | 0.70 | 0.74 | 1.87 | 3.2 | 0.003 | 0.85 | 0.0 | 0.04 | 13.60 | 0.00 | 2.000 | 15.94 | 0.08 | 2.9 | 97.1 | 0.0 | 0.14 | 1.48 | 0.72 | 0.82 | 1.52 | 12825 | 1690 | 10 | 0 | 10 | 0 | 0 | logfile |