Table showing results for October 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3J9R	6271	2021-10-08	2015-02-17	3.9	3.83	—	3.8	0.006	0.89	0.0	0.04	9.86	0.00	2.112	3.89	0.89	14.5	80.8	4.7	-5.43	0.59	0.82	2.58	3.8	0.005	0.76	0.0	0.04	15.87	0.01	2.066	14.28	0.50	8.8	90.2	1.0	-2.02	1.34	0.58	0.82	1.87	103824	13788	36	0	0	0	0	logfile
✔	3J9Q	6270	2021-10-07	2015-02-17	3.5	3.51	—	3.5	0.008	1.16	0.0	0.06	14.05	0.00	2.284	4.53	8.68	19.1	75.1	5.8	-5.24	0.60	0.82	2.71	3.5	0.004	0.84	0.0	0.05	16.24	0.01	2.059	14.50	0.69	10.6	87.7	1.7	-1.83	1.45	0.61	0.82	2.55	99648	13224	48	0	0	0	0	logfile
✘	5AJ0	2875	2021-10-13	2015-02-19	3.5	11.12	—	—	0.011	1.61	31.0	0.09	16.14	0.01	0.414	42.35	8.00	5.7	89.8	4.5	0.77	0.00	0.00	0.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	218559	11738	106	5776	355	0	0	logfile
✔	3J9S	6272	2021-10-03	2015-02-19	2.6	3.83	—	3.5	0.020	1.80	0.0	0.12	18.55	0.01	0.216	24.62	6.86	1.3	98.0	0.8	1.97	0.68	0.76	3.15	3.5	0.004	0.64	0.0	0.04	17.35	0.00	1.199	8.93	1.43	1.5	98.5	0.0	1.45	1.61	0.71	0.90	3.30	9813	1191	3	0	15	315	0	logfile
✔	5AJ3	2913	2021-10-04	2015-02-20	3.6	3.73	—	3.7	0.018	1.27	0.0	0.05	18.73	0.01	1.844	23.89	10.71	3.9	96.0	0.1	-3.65	0.86	0.86	2.03	3.6	0.006	0.79	0.0	0.04	17.98	0.01	1.821	14.46	0.69	4.9	95.1	0.0	0.21	1.63	0.84	0.82	1.58	66363	4665	44	967	1141	118	0	logfile
✔	5AJ4	2914	2021-10-03	2015-02-20	3.8	3.91	—	3.8	0.014	1.27	0.0	0.05	18.99	0.01	1.717	18.58	11.32	4.3	95.6	0.1	-3.30	0.87	0.85	1.24	3.8	0.006	0.83	0.0	0.04	18.51	0.01	1.118	17.20	0.70	5.1	94.8	0.1	-0.24	2.17	0.87	0.83	1.14	167915	12874	119	2514	1521	340	0	logfile
✘	3J9W	6306	2021-10-06	2015-03-16	3.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	135425	5661	54	4675	0	0	0	logfile
✔	4UFT	2867	2021-10-04	2015-03-19	4.3	4.24	—	4.2	0.005	0.95	0.0	0.05	11.26	0.00	1.169	8.50	0.31	13.2	83.9	3.0	-4.63	0.54	0.70	—	4.2	0.003	0.76	0.0	0.04	13.39	0.00	2.012	11.60	0.06	8.1	90.8	1.1	-2.42	2.30	0.59	0.78	—	119847	14703	78	234	0	0	0	logfile
✔	4UG0	2938	2021-10-13	2015-03-20	3.6	3.15	—	3.1	0.005	0.88	0.0	0.04	16.76	0.00	1.818	14.61	0.04	11.7	83.3	5.0	-2.77	0.59	0.70	2.13	3.1	0.007	0.87	1.0	0.04	18.26	0.01	1.500	18.42	0.20	13.2	85.8	1.0	-3.02	0.60	0.59	0.70	1.37	218776	11675	102	5869	245	0	0	logfile
✔	3J9X	6310	2021-10-05	2015-03-21	3.8	3.84	—	3.8	0.014	1.24	0.0	0.08	13.09	0.02	2.369	3.22	0.48	2.8	95.6	1.6	-0.65	0.51	0.57	0.47	3.8	0.004	0.75	0.0	0.04	16.47	0.01	2.046	20.75	0.44	3.1	96.9	0.0	1.87	1.37	0.63	0.79	2.28	70702	7424	60	696	0	0	0	logfile
✘	3J9Y	6311	2021-10-10	2015-03-23	3.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	148915	6657	58	4645	0	0	0	logfile
✔	3J9Z	6315	2021-10-13	2015-03-27	3.6	3.80	—	3.7	0.017	2.31	171.0	0.16	18.21	0.04	2.267	1.69	3.84	7.6	89.1	3.3	-2.82	0.56	0.39	0.14	3.7	0.005	0.76	0.0	0.04	16.82	0.01	1.994	18.28	1.17	9.8	89.6	0.6	-1.73	2.27	0.84	0.82	1.14	156714	7125	59	4717	1	0	0	logfile
✘	4Ui9	2924	2021-10-04	2015-03-27	3.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	66453	8472	25	0	5	0	0	logfile
✔	4UiS	2974	2021-10-03	2015-04-03	4.4	4.48	—	4.4	0.009	1.29	0.0	0.06	9.92	0.01	1.546	24.35	1.19	7.7	87.4	5.0	-2.00	0.50	0.56	—	4.4	0.003	0.78	0.0	0.04	12.23	0.00	2.090	14.15	0.00	9.1	89.5	1.3	-1.18	1.70	0.55	0.73	—	8518	791	5	0	458	0	0	logfile
✔	3JA7	6324	2021-10-07	2015-04-21	3.6	3.71	—	3.7	0.010	1.53	0.0	0.06	15.94	0.01	1.528	37.29	10.44	11.0	86.8	2.1	-4.92	0.77	0.82	1.86	3.7	0.004	0.82	0.0	0.04	16.22	0.01	2.231	9.60	0.41	4.7	94.7	0.6	-1.18	1.74	0.77	0.80	1.29	41280	5136	12	0	0	0	0	logfile
✔	5A0Q	2981	2021-10-07	2015-04-22	3.5	3.34	—	3.3	0.020	2.21	14.0	0.12	15.45	0.02	0.702	33.05	1.99	4.5	95.1	0.4	-3.18	0.60	0.61	1.82	3.3	0.013	1.25	2.0	0.05	17.87	0.01	1.931	24.62	0.93	4.6	95.2	0.2	-1.64	0.96	0.64	0.64	1.04	43448	5582	34	0	6	0	0	logfile
✔	5A1A	2984	2021-10-06	2015-04-29	2.2	2.04	2.58	2.5	0.009	1.21	0.0	0.04	13.14	0.01	0.020	13.89	1.03	3.9	95.5	0.6	-1.86	0.53	0.76	4.20	2.5	0.004	0.76	0.0	0.05	17.54	0.01	1.962	11.69	2.95	3.6	96.3	0.1	-0.66	0.61	0.53	0.79	4.13	33696	4088	12	0	20	776	0	logfile
✔	5A22	6337	2021-10-06	2015-05-06	3.8	4.20	—	4.2	0.009	1.49	0.0	0.06	15.75	0.01	2.014	13.30	5.57	13.9	84.2	2.0	-5.08	0.72	0.82	1.68	4.1	0.011	1.04	1.0	0.04	17.06	0.01	1.825	18.86	0.72	13.4	85.6	1.1	-1.46	2.69	0.69	0.76	1.60	32187	2002	1	0	2	0	16110	logfile
✘	3JA8	6338	2021-10-06	2015-05-09	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	29838	3786	12	0	6	0	0	logfile
✔	5A2Q	3019	2021-10-06	2015-05-21	3.9	4.01	—	3.9	0.008	1.23	0.0	0.05	19.81	0.01	1.830	13.19	12.93	4.3	95.5	0.2	-3.44	0.89	0.88	1.18	3.9	0.005	0.75	0.0	0.04	18.75	0.01	1.889	16.01	0.54	5.4	94.5	0.1	-0.30	1.62	0.86	0.82	1.21	80749	4931	45	1922	115	144	0	logfile

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