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Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3JAL | 6350 | 2022-12-21 | 2015-06-16 | 3.5 | 3.70 | — | 3.6 | 0.009 | 1.46 | 5.0 | 0.08 | 15.76 | 0.01 | 1.948 | 1.69 | 1.21 | 2.9 | 97.0 | 0.1 | 0.16 | 0.68 | 0.86 | 2.81 | 3.6 | 0.004 | 0.65 | 0.0 | 0.04 | 17.02 | 0.00 | 1.900 | 7.75 | 0.26 | 2.3 | 97.7 | 0.0 | 0.69 | 0.79 | 0.66 | 0.87 | 2.55 | 43012 | 5428 | 26 | 0 | 18 | 0 | 0 | logfile |
✔ | 3JAM | 3047 | 2022-12-15 | 2015-06-17 | 3.46 | 3.54 | 3.52 | 3.5 | 0.007 | 1.32 | 63.0 | 0.10 | 21.31 | 0.01 | 1.398 | 7.24 | 13.45 | 10.2 | 86.0 | 3.8 | -1.98 | 0.64 | 0.83 | 1.53 | 3.5 | 0.004 | 0.72 | 0.0 | 0.04 | 19.38 | 0.01 | 1.863 | 12.97 | 0.65 | 9.3 | 89.5 | 1.1 | -1.00 | 0.72 | 0.67 | 0.86 | 1.64 | 77850 | 5056 | 42 | 1780 | 83 | 0 | 0 | logfile |
✔ | 3JAP | 3048 | 2022-12-17 | 2015-06-18 | 4.9 | 5.03 | 5.08 | 5.0 | 0.007 | 1.39 | 79.0 | 0.11 | 22.42 | 0.01 | 1.307 | 9.55 | 13.17 | 10.9 | 85.8 | 3.4 | -1.68 | 0.68 | 0.69 | — | 4.9 | 0.003 | 0.75 | 0.0 | 0.04 | 18.86 | 0.01 | 1.298 | 21.68 | 0.03 | 9.5 | 89.6 | 0.8 | -1.51 | 2.18 | 0.71 | 0.80 | — | 98333 | 7272 | 53 | 1869 | 255 | 0 | 0 | logfile |
✔ | 3JAR | 6351 | 2022-12-21 | 2015-06-19 | 3.4 | 3.64 | — | 3.6 | 0.008 | 1.38 | 6.0 | 0.08 | 16.19 | 0.01 | 1.923 | 1.68 | 1.82 | 2.6 | 97.2 | 0.2 | 0.27 | 0.69 | 0.87 | 3.14 | 3.6 | 0.003 | 0.59 | 0.0 | 0.04 | 16.69 | 0.00 | 1.907 | 6.21 | 0.11 | 2.1 | 97.9 | 0.0 | 0.87 | 1.52 | 0.65 | 0.88 | 2.66 | 43024 | 5428 | 26 | 6 | 12 | 0 | 0 | logfile |
✔ | 3JAS | 6353 | 2022-12-20 | 2015-06-19 | 3.5 | 3.68 | — | 3.7 | 0.008 | 1.46 | 6.0 | 0.08 | 16.41 | 0.01 | 1.846 | 3.52 | 2.07 | 3.1 | 96.8 | 0.1 | 0.41 | 0.64 | 0.85 | 2.90 | 3.6 | 0.003 | 0.61 | 0.0 | 0.04 | 17.03 | 0.00 | 1.977 | 8.03 | 0.21 | 2.7 | 97.3 | 0.0 | 1.21 | 0.77 | 0.60 | 0.84 | 2.44 | 40506 | 5124 | 24 | 6 | 12 | 0 | 0 | logfile |
✔ | 3JAT | 6352 | 2022-12-20 | 2015-06-20 | 3.5 | 3.68 | — | 3.7 | 0.009 | 1.54 | 12.0 | 0.09 | 16.21 | 0.01 | 1.855 | 1.71 | 0.55 | 3.1 | 96.8 | 0.1 | 0.14 | 0.64 | 0.82 | 2.93 | 3.7 | 0.004 | 0.63 | 0.0 | 0.04 | 17.24 | 0.00 | 1.850 | 8.29 | 0.25 | 2.5 | 97.5 | 0.0 | 0.90 | 0.77 | 0.63 | 0.85 | 2.28 | 40500 | 5124 | 24 | 0 | 24 | 0 | 0 | logfile |
✔ | 5A63 | 3061 | 2022-12-12 | 2015-06-24 | 3.4 | 3.50 | 3.42 | 3.5 | 0.010 | 1.68 | 8.0 | 0.11 | 19.25 | 0.01 | 2.079 | 39.51 | 13.74 | 6.4 | 91.5 | 2.1 | -0.17 | 0.36 | 0.40 | 2.09 | 3.5 | 0.003 | 0.73 | 0.0 | 0.04 | 17.91 | 0.00 | 2.229 | 12.49 | 0.57 | 4.8 | 94.8 | 0.4 | 0.18 | 3.22 | 0.62 | 0.81 | 1.66 | 10003 | 1223 | 13 | 0 | 22 | 0 | 0 | logfile |
✔ | 5A6E | 3062 | 2022-12-12 | 2015-06-25 | 4.5 | 6.76 | — | 5.1 | 0.010 | 3.73 | 0.0 | 0.05 | 15.55 | 0.01 | 2.112 | 8.77 | 3.19 | 11.1 | 88.8 | 0.2 | -5.00 | 0.36 | 0.56 | — | 4.8 | 0.003 | 0.58 | 0.0 | 0.03 | 10.50 | 0.00 | 1.994 | 10.27 | 0.00 | 6.4 | 93.6 | 0.0 | -0.83 | 1.50 | 0.40 | 0.73 | — | 11093 | 634 | 4 | 0 | 182 | 0 | 5102 | logfile |
✔ | 5A6F | 3063 | 2022-12-12 | 2015-06-25 | 4.2 | 5.75 | — | 5.0 | 0.012 | 1.50 | 0.0 | 0.05 | 12.32 | 0.01 | 2.112 | 10.08 | 3.74 | 12.2 | 87.6 | 0.2 | -4.94 | 0.56 | 0.74 | — | 4.7 | 0.002 | 0.57 | 0.0 | 0.04 | 10.94 | 0.00 | 2.010 | 10.19 | 0.00 | 5.1 | 94.9 | 0.0 | -1.00 | 0.99 | 0.57 | 0.75 | — | 8881 | 540 | 2 | 0 | 43 | 0 | 4330 | logfile |
✘ | 5A7U | 3079 | 2022-12-18 | 2015-07-10 | 4.8 | 3.82 | — | 4.6 | 0.020 | 3.41 | 3.0 | 0.25 | 21.78 | 0.08 | 2.651 | 30.77 | 25.00 | 24.0 | 72.0 | 4.0 | -6.05 | -0.01 | 0.31 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 455 | 27 | 1 | 0 | 1 | 0 | 231 | logfile |
✔ | 5A8L | 3099 | 2022-12-12 | 2015-07-16 | 3.8 | 3.60 | — | 3.5 | 0.004 | 0.67 | 0.0 | 0.02 | 12.36 | 0.00 | 1.435 | 9.01 | 0.95 | 10.3 | 86.8 | 2.9 | -2.06 | 0.18 | 0.43 | 0.47 | 3.5 | 0.006 | 0.97 | 0.0 | 0.05 | 17.64 | 0.01 | 1.991 | 23.78 | 0.57 | 11.9 | 87.0 | 1.1 | -2.68 | 1.53 | 0.23 | 0.63 | 0.73 | 12264 | 624 | 9 | 347 | 0 | 0 | 0 | logfile |
✔ | 3JB6 | 6408 | 2022-12-13 | 2015-08-02 | 3.3 | 3.35 | — | 3.4 | 0.010 | 0.90 | 4.0 | 0.06 | 9.55 | 0.01 | 2.123 | 8.54 | 0.20 | 2.4 | 97.4 | 0.1 | -3.72 | 0.63 | 0.90 | 5.02 | 3.4 | 0.002 | 0.58 | 0.0 | 0.04 | 15.00 | 0.00 | 2.179 | 6.12 | 0.33 | 1.8 | 98.2 | 0.0 | 0.05 | 1.20 | 0.62 | 0.88 | 3.54 | 13904 | 1731 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 3JB7 | 6404 | 2022-12-13 | 2015-08-03 | 4.0 | 4.13 | — | 4.1 | 0.007 | 0.76 | 3.0 | 0.05 | 10.78 | 0.00 | 0.793 | 10.69 | 1.13 | 3.9 | 95.9 | 0.2 | -2.17 | 0.76 | 0.85 | — | 4.1 | 0.003 | 0.69 | 0.0 | 0.04 | 15.23 | 0.00 | 2.108 | 11.23 | 0.60 | 2.8 | 97.1 | 0.1 | 0.12 | 0.87 | 0.78 | 0.85 | — | 14176 | 1733 | 8 | 11 | 3 | 0 | 0 | logfile |
✘ | 3JB9 | 6413 | 2022-12-19 | 2015-08-09 | 3.6 | 3.70 | — | 3.6 | 0.010 | 1.29 | 13.0 | 0.07 | 16.84 | 0.01 | 1.253 | 18.11 | 8.06 | 9.1 | 87.9 | 3.0 | -3.97 | 0.52 | 0.51 | 1.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 86551 | 9194 | 50 | 328 | 1328 | 0 | 0 | logfile |
✔ | 5ACo | 3121 | 2022-12-14 | 2015-08-17 | 4.36 | 4.52 | — | 4.3 | 0.012 | 1.91 | 3.0 | 0.11 | 10.21 | 0.02 | 1.986 | 10.87 | 0.29 | 9.1 | 88.9 | 1.9 | -2.40 | 0.70 | 0.68 | — | 4.3 | 0.005 | 0.79 | 0.0 | 0.05 | 11.29 | 0.00 | 2.136 | 13.50 | 0.00 | 7.9 | 91.5 | 0.6 | -1.09 | 1.61 | 0.82 | 0.84 | — | 21297 | 2415 | 69 | 0 | 192 | 0 | 0 | logfile |
✔ | 5ADX | 2856 | 2022-12-22 | 2015-08-24 | 4.0 | 4.18 | — | 4.0 | 0.008 | 1.05 | 1.0 | 0.06 | 12.82 | 0.00 | 1.155 | 3.45 | 1.97 | 6.3 | 93.5 | 0.3 | -2.81 | 0.77 | 0.63 | — | 4.0 | 0.004 | 0.71 | 0.0 | 0.04 | 14.81 | 0.00 | 2.081 | 12.00 | 0.29 | 5.6 | 94.4 | 0.0 | -0.57 | 0.91 | 0.86 | 0.79 | — | 49392 | 4737 | 27 | 0 | 2569 | 0 | 0 | logfile |
✔ | 5ADY | 3133 | 2022-12-17 | 2015-08-25 | 4.5 | 4.75 | — | 4.5 | 0.011 | 1.28 | 0.0 | 0.06 | 18.75 | 0.01 | 1.391 | 57.97 | 0.21 | 11.7 | 81.7 | 6.7 | -3.35 | 0.72 | 0.63 | — | 4.5 | 0.005 | 0.78 | 0.0 | 0.04 | 17.45 | 0.01 | 1.818 | 31.60 | 0.00 | 13.3 | 85.6 | 1.1 | -3.13 | 1.12 | 0.87 | 0.84 | — | 97364 | 4197 | 35 | 3020 | 2 | 0 | 0 | logfile |
✔ | 5AN9 | 3145 | 2022-12-20 | 2015-09-06 | 3.3 | 3.29 | — | 3.3 | 0.007 | 1.22 | 5.0 | 0.10 | 17.04 | 0.01 | 1.192 | 3.57 | 2.32 | 9.1 | 88.0 | 2.9 | -3.68 | 0.38 | 0.81 | 1.98 | 3.3 | 0.007 | 0.87 | 0.0 | 0.05 | 17.57 | 0.01 | 2.003 | 13.84 | 1.16 | 11.8 | 87.5 | 0.6 | -2.88 | 1.53 | 0.40 | 0.81 | 1.34 | 39693 | 1905 | 11 | 1162 | 0 | 0 | 0 | logfile |
✔ | 5ANC | 3147 | 2022-12-21 | 2015-09-06 | 4.2 | 4.23 | — | 4.2 | 0.008 | 1.35 | 7.0 | 0.10 | 19.00 | 0.01 | 1.236 | 6.63 | 4.21 | 13.6 | 82.7 | 3.6 | -4.33 | 0.41 | 0.74 | — | 4.2 | 0.004 | 0.83 | 0.0 | 0.04 | 17.25 | 0.01 | 2.031 | 20.61 | 0.00 | 14.5 | 84.5 | 1.0 | -3.66 | 1.57 | 0.39 | 0.70 | — | 46807 | 2801 | 11 | 1162 | 0 | 0 | 0 | logfile |
✔ | 5ANB | 3146 | 2022-12-22 | 2015-09-06 | 4.1 | 4.11 | — | 4.1 | 0.008 | 1.31 | 6.0 | 0.10 | 18.54 | 0.01 | 1.245 | 5.13 | 4.33 | 13.0 | 83.9 | 3.1 | -4.17 | 0.41 | 0.75 | — | 4.0 | 0.004 | 0.83 | 0.0 | 0.04 | 17.28 | 0.01 | 2.089 | 19.99 | 0.04 | 13.7 | 85.6 | 0.7 | -3.60 | 0.89 | 0.40 | 0.72 | — | 48493 | 3025 | 12 | 1162 | 0 | 0 | 0 | logfile |