Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5FNA	3241	2023-08-09	2015-11-11	4.8	4.43	—	4.2	0.013	1.51	0.0	0.08	12.32	0.01	2.219	36.54	0.00	6.0	94.0	0.0	-1.83	0.48	0.71	—	4.2	0.004	0.85	0.0	0.04	14.28	0.01	2.153	22.99	0.00	8.4	90.4	1.2	-0.31	2.61	0.49	0.75	—	5328	680	8	0	0	0	0	logfile
✔	3JC2	3245	2023-08-09	2015-11-15	3.6	3.58	3.97	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	18.51	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.004	0.86	0.0	0.04	17.18	0.00	2.128	14.33	0.49	7.4	91.9	0.6	-1.41	3.32	0.24	0.53	1.66	3911	482	4	0	32	0	0	logfile
✔	5GAD	8000	2023-08-24	2015-11-24	3.7	4.17	—	3.9	0.009	1.11	1.0	0.05	15.93	0.01	1.737	9.19	10.34	3.5	96.5	0.1	-3.19	0.77	0.79	1.52	3.9	0.008	0.70	0.0	0.04	15.17	0.01	1.037	20.35	0.82	4.2	95.7	0.1	-0.22	2.14	0.81	0.88	1.33	98006	4087	49	3049	507	0	0	logfile
✔	3JCA	6441	2023-08-12	2015-11-24	4.8	4.59	—	4.5	0.012	1.49	0.0	0.07	18.62	0.01	2.370	2.63	0.00	7.2	92.8	0.0	-1.87	0.75	0.75	—	4.5	0.003	0.67	0.0	0.04	19.55	0.01	2.058	15.25	0.10	5.1	94.9	0.0	-0.38	2.47	0.76	0.77	—	11466	1226	16	80	4	0	0	logfile
✘	3JC5	6535	2023-08-25	2015-11-24	4.7	5.02	—	4.8	0.009	1.54	5.0	0.06	12.17	0.01	0.300	46.29	0.63	9.4	88.9	1.7	-4.21	0.76	0.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	40041	5039	11	0	0	0	0	logfile
✘	3JC6	6534	2023-08-17	2015-11-24	3.7	4.01	—	3.9	0.009	1.54	0.0	0.06	12.91	0.01	1.203	39.73	0.87	9.8	89.0	1.1	-3.87	0.79	0.76	1.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23732	2953	12	0	1	0	0	logfile
✘	3JC7	6536	2023-08-25	2015-11-24	4.8	5.23	—	4.8	0.009	1.57	7.0	0.07	12.16	0.01	0.163	42.92	0.45	8.5	90.1	1.3	-4.10	0.75	0.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	40298	5075	12	0	1	0	0	logfile
✔	5GAE	8001	2023-08-23	2015-11-25	3.33	3.45	—	3.3	0.007	0.94	0.0	0.04	14.78	0.00	1.884	5.65	5.36	3.0	96.9	0.1	-2.76	0.79	0.88	2.24	3.3	0.008	0.75	0.0	0.04	15.29	0.01	1.725	13.21	0.86	4.4	95.5	0.1	-0.31	2.08	0.79	0.89	2.33	95192	3886	41	3007	349	0	0	logfile
✔	5GAF	8002	2023-08-23	2015-11-25	4.3	4.42	—	4.3	0.007	1.09	1.0	0.05	15.95	0.01	1.266	8.87	11.04	3.5	96.4	0.1	-3.28	0.63	0.64	—	4.3	0.005	0.71	0.0	0.04	14.99	0.01	1.044	21.32	0.03	5.4	94.5	0.2	-0.97	1.35	0.71	0.84	—	96182	3889	47	3049	452	0	0	logfile
✔	5GAG	8003	2023-08-23	2015-11-26	3.8	3.95	—	3.8	0.007	1.04	1.0	0.05	15.71	0.00	1.789	8.16	9.03	3.0	96.9	0.1	-3.35	0.79	0.90	1.98	3.8	0.006	0.73	0.0	0.04	15.46	0.01	0.954	17.90	1.07	4.6	95.2	0.1	-0.85	0.69	0.78	0.88	2.01	94030	3598	46	3049	473	0	0	logfile
✔	5GAH	8004	2023-08-23	2015-11-26	3.8	3.97	—	3.9	0.008	1.10	0.0	0.05	15.97	0.01	1.737	8.30	11.31	3.3	96.7	0.1	-3.33	0.73	0.85	1.12	3.9	0.004	0.62	0.0	0.03	15.25	0.00	1.170	14.30	0.97	3.9	96.0	0.1	-0.54	1.16	0.73	0.87	1.46	94027	3595	46	3049	473	0	0	logfile
✔	3JCD	6549	2023-08-31	2015-12-01	3.7	5.07	—	19.0	0.006	0.83	0.0	0.04	14.69	0.00	1.289	14.63	0.02	9.6	85.8	4.5	-2.43	0.34	0.04	0.30	3.4	0.005	1.16	0.0	0.06	20.49	0.01	1.400	48.65	0.88	15.2	83.4	1.3	-4.28	2.51	0.71	0.42	0.16	147815	5982	57	4715	0	0	0	logfile
✔	5GAK	3227	2023-08-17	2015-12-09	3.88	4.13	—	19.0	0.006	0.94	0.0	0.06	20.85	0.01	0.816	23.89	0.26	9.2	90.2	0.7	-3.81	0.21	0.02	0.28	3.9	0.003	0.72	0.0	0.04	18.78	0.00	2.007	19.48	0.38	8.0	91.6	0.4	-2.15	1.90	0.32	0.21	0.08	128975	6434	50	3597	234	0	0	logfile
✔	3JCF	6551	2023-08-13	2015-12-11	3.8	4.02	—	3.9	0.004	1.03	0.0	0.04	6.81	0.00	2.057	8.41	0.00	4.6	95.4	0.0	-1.63	0.74	0.81	2.11	3.9	0.003	0.67	0.0	0.04	12.60	0.00	1.983	12.49	0.06	3.4	96.6	0.0	1.84	0.69	0.75	0.85	1.65	14228	1745	10	0	13	0	0	logfile
✔	3JCi	6555	2023-08-23	2015-12-13	2.9	3.14	—	3.1	0.010	0.89	0.0	0.05	8.65	0.01	2.239	18.61	0.00	2.1	97.3	0.5	-2.08	0.75	0.85	5.77	3.1	0.003	0.65	0.0	0.04	15.86	0.00	2.235	7.01	1.62	2.7	97.3	0.0	-0.73	0.69	0.69	0.86	4.83	93420	11400	60	0	0	0	0	logfile
✔	5GAM	8011	2023-08-15	2015-12-15	3.7	4.03	—	3.9	0.008	1.49	11.0	0.10	19.79	0.01	1.976	11.79	6.60	10.0	88.2	1.8	-2.90	0.72	0.57	1.24	3.9	0.004	0.87	0.0	0.05	18.86	0.00	2.066	18.19	0.55	6.9	93.0	0.2	-1.07	1.70	0.80	0.79	1.15	19123	2002	13	166	19	0	0	logfile
✔	5GAP	8014	2023-08-21	2015-12-15	3.6	3.65	—	3.6	0.008	1.51	26.0	0.09	17.39	0.01	2.143	7.19	4.23	8.8	89.7	1.5	-1.15	0.48	0.48	1.61	3.6	0.004	0.75	0.0	0.04	17.58	0.00	2.059	14.66	0.59	5.3	94.6	0.1	0.54	2.22	0.66	0.78	1.13	31576	3503	12	143	82	0	0	logfile
✘	3JCJ	6559	2023-08-31	2015-12-18	3.7	3.96	—	3.8	0.007	1.05	18.0	0.10	12.45	0.01	1.344	2.06	0.39	9.2	89.0	1.8	-3.55	0.80	0.75	1.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	148347	6249	82	4594	197	837	0	logfile
✔	3JCL	6526	2023-08-18	2015-12-21	4.0	4.03	—	4.0	0.018	1.83	9.0	0.09	9.75	0.01	2.379	2.74	0.00	5.2	94.3	0.6	-0.72	0.71	0.74	—	4.0	0.003	0.74	0.0	0.04	14.59	0.00	2.114	12.67	0.44	7.2	92.7	0.1	-0.57	1.77	0.70	0.70	—	24822	3201	3	0	0	0	0	logfile
✔	3JCN	3285	2023-08-30	2016-01-04	4.6	4.58	—	4.4	0.007	1.08	9.0	0.10	12.71	0.01	1.344	3.04	0.18	6.9	91.6	1.5	-3.44	0.75	0.65	—	4.4	0.005	0.77	0.0	0.04	15.59	0.01	1.963	30.05	0.06	11.2	88.3	0.5	-2.53	1.05	0.81	0.79	—	147292	6123	57	4638	1	0	0	logfile

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