Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5Lii	4053	2023-02-15	2016-07-14	3.8	2.99	—	3.9	0.015	2.41	6.0	0.14	12.69	0.01	1.855	42.83	1.41	16.9	81.9	1.2	-6.10	0.55	0.70	3.46	3.8	0.003	0.88	0.0	0.04	15.96	0.01	2.201	13.15	1.41	14.6	84.7	0.7	-4.22	0.87	0.56	0.67	1.49	3098	433	1	0	0	0	0	logfile
✔	5LJ3	4055	2023-02-24	2016-07-17	3.8	3.92	—	3.8	0.007	1.46	40.0	0.09	17.30	0.01	1.631	5.99	8.54	8.1	90.7	1.2	-1.69	0.70	0.81	1.37	3.8	0.003	0.72	0.0	0.04	17.08	0.00	2.001	14.47	0.45	4.9	94.9	0.2	0.41	0.85	0.69	0.78	1.39	63161	7305	45	458	142	0	0	logfile
✔	5LJo	4061	2023-02-25	2016-07-19	4.9	7.28	—	5.9	0.014	1.69	1.0	0.08	11.01	0.01	2.147	5.45	0.15	9.4	86.8	3.8	-2.52	0.69	0.58	—	5.9	0.003	0.67	0.0	0.04	12.72	0.00	1.935	15.16	0.00	10.8	88.9	0.3	-2.08	1.31	0.79	0.79	—	24947	1624	5	0	0	0	12255	logfile
✘	5LJV	4062	2023-02-21	2016-07-21	3.64	3.75	—	3.7	0.030	2.85	85.0	0.16	18.81	0.02	2.070	21.28	11.82	7.4	89.7	2.9	-4.53	0.71	0.84	2.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15000	1950	12	0	12	0	0	logfile
✔	5LKi	4068	2023-02-22	2016-07-22	3.46	3.72	—	3.5	0.013	1.24	5.0	0.06	10.71	0.01	0.579	39.38	0.18	7.7	91.7	0.6	-4.39	0.65	0.79	2.37	3.5	0.003	0.82	0.0	0.04	15.17	0.00	2.098	14.63	0.60	6.9	92.8	0.4	0.27	0.81	0.63	0.80	1.67	55415	7135	5	0	0	0	0	logfile
✔	5L08	8300	2023-02-21	2016-07-26	4.6	3.95	—	4.3	0.011	1.03	0.0	0.05	11.66	0.00	2.041	6.99	0.00	3.0	96.8	0.2	-0.41	0.34	0.71	—	4.5	0.006	1.23	0.0	0.06	14.56	0.01	1.854	41.71	0.00	6.7	93.3	0.0	-3.29	3.82	0.26	0.71	—	13617	1629	9	0	0	0	0	logfile
✔	5LMQ	4076	2023-02-22	2016-08-01	4.2	4.46	4.25	4.2	0.009	1.44	30.0	0.12	20.84	0.02	1.387	19.43	21.46	10.5	86.1	3.4	-2.56	0.80	0.76	—	4.2	0.004	0.77	0.0	0.04	16.79	0.01	1.832	30.18	0.05	8.7	90.9	0.5	-1.28	1.62	0.84	0.85	—	55841	2635	29	1612	66	0	0	logfile
✔	5LMR	4077	2023-02-22	2016-08-01	4.45	4.71	4.60	4.4	0.008	1.39	20.0	0.12	20.52	0.02	1.426	17.92	16.73	8.7	88.5	2.8	-2.16	0.79	0.74	—	4.4	0.008	0.83	0.0	0.04	16.97	0.01	1.974	37.25	0.05	9.4	90.1	0.5	-2.00	1.61	0.84	0.85	—	55662	2628	29	1609	4	0	0	logfile
✔	5LMo	4074	2023-02-21	2016-08-01	4.3	4.71	4.30	4.3	0.009	1.47	50.0	0.12	20.86	0.01	0.865	18.49	20.40	10.6	85.8	3.6	-2.76	0.80	0.69	—	4.3	0.005	0.76	0.0	0.04	16.78	0.01	0.968	35.61	0.00	9.3	90.2	0.5	-1.75	2.17	0.87	0.84	—	54110	2622	29	1533	110	0	0	logfile
✔	5LMN	4073	2023-02-21	2016-08-01	3.55	3.68	3.61	3.6	0.007	1.42	35.0	0.12	20.67	0.01	0.925	19.85	21.59	10.4	86.7	2.8	-2.30	0.79	0.88	1.35	3.6	0.004	0.72	0.0	0.04	17.13	0.00	1.859	19.78	0.87	7.4	92.2	0.3	-1.09	1.56	0.77	0.84	1.29	54149	2623	27	1534	129	0	0	logfile
✔	5LMU	4080	2023-02-22	2016-08-01	4.0	4.12	4.00	4.0	0.008	1.44	43.0	0.12	21.34	0.02	1.289	21.15	25.30	12.0	84.2	3.8	-2.57	0.73	0.78	—	4.0	0.005	0.80	0.0	0.04	17.69	0.01	1.812	26.28	0.84	7.7	91.8	0.5	-1.57	0.88	0.75	0.83	—	55195	2550	29	1612	82	0	0	logfile
✔	5LMV	4083	2023-02-22	2016-08-01	4.9	6.86	6.64	6.7	0.008	1.34	34.0	0.11	20.14	0.01	0.977	14.22	15.18	9.6	87.9	2.5	-1.98	0.70	0.58	—	6.7	0.004	0.78	0.0	0.04	17.42	0.01	1.879	35.96	0.04	8.0	91.5	0.5	-1.87	2.22	0.78	0.77	—	59470	3124	30	1612	4	0	0	logfile
✔	5LMT	4079	2023-02-22	2016-08-01	4.15	4.33	4.20	4.2	0.008	1.43	21.0	0.12	20.76	0.02	1.290	18.78	22.35	11.9	84.8	3.3	-2.73	0.77	0.76	—	4.1	0.004	0.76	0.0	0.04	16.49	0.01	1.832	27.25	0.09	8.9	90.8	0.3	-1.60	0.91	0.80	0.83	—	55776	2622	31	1612	88	0	0	logfile
✔	5LMX	4088	2023-02-27	2016-08-02	4.9	5.64	—	4.9	0.011	1.55	0.0	0.06	18.69	0.01	0.614	16.48	8.43	6.5	92.9	0.6	-2.70	0.80	0.62	—	4.9	0.004	0.75	0.0	0.04	14.51	0.01	2.036	19.26	0.00	4.3	95.6	0.1	-0.60	1.41	0.88	0.80	—	31118	3918	19	0	6	0	0	logfile
✔	5LNK	4093	2023-02-24	2016-08-04	3.9	3.95	—	3.9	0.007	1.05	0.0	1.04	10.85	0.01	2.038	25.42	0.32	12.6	86.9	0.5	-4.85	0.76	0.79	1.96	3.9	0.009	1.80	0.0	0.31	16.78	0.01	1.969	22.71	1.11	11.6	88.1	0.3	-1.76	0.92	0.77	0.80	0.77	63760	7918	61	0	144	0	0	logfile
✘	5LNK	4479	2023-02-24	2016-08-04	3.9	3.83	7.93	96.0	0.007	1.05	0.0	1.04	10.85	0.01	2.038	25.42	0.32	12.6	86.9	0.5	-4.85	0.00	0.00	-0.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	63760	7918	61	0	144	0	0	logfile
✔	5LNK	4481	2023-02-24	2016-08-04	3.9	3.95	17.72	71.0	0.007	1.05	0.0	1.04	10.85	0.01	2.038	25.42	0.32	12.6	86.9	0.5	-4.85	0.01	0.00	0.13	40.0	0.009	1.71	0.0	0.31	13.69	0.01	1.425	16.41	0.33	10.3	89.5	0.3	-1.27	0.81	0.05	0.14	0.19	63760	7918	61	0	144	0	0	logfile
✔	5SY1	8315	2023-02-20	2016-08-10	3.9	3.66	3.96	3.8	0.008	1.02	0.0	0.05	10.05	0.01	1.524	5.60	0.08	7.1	92.7	0.1	-5.23	0.51	0.62	1.65	3.7	0.003	0.75	0.0	0.04	15.30	0.00	2.152	10.11	0.24	5.4	94.6	0.0	0.02	0.93	0.62	0.78	1.19	11462	1458	8	0	10	0	0	logfile
✔	5SZS	8331	2023-02-27	2016-08-15	3.4	3.57	—	3.5	0.023	3.00	3.0	0.20	11.39	0.01	1.476	3.47	0.68	5.7	93.7	0.6	-0.27	0.85	0.83	2.56	3.5	0.004	0.63	0.0	0.05	13.20	0.00	2.100	5.94	0.42	5.3	94.4	0.3	-0.06	0.71	0.85	0.86	2.60	30306	3531	69	0	222	0	0	logfile
✘	5T4D	8354	2023-02-21	2016-08-29	3.0	3.12	2.96	3.1	0.010	0.79	0.0	0.05	8.89	0.00	2.120	12.34	0.26	4.4	95.6	0.0	-2.69	0.75	0.79	4.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14876	1852	8	0	12	0	0	logfile

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