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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 3JBW | 6489 | 2024-03-24 | 2015-10-21 | 4.6 | 4.71 | — | 4.6 | 0.013 | 1.70 | 1.0 | 0.08 | 21.90 | 0.01 | 1.977 | 22.69 | 4.88 | 5.6 | 93.6 | 0.9 | -3.37 | 0.75 | 0.79 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 19997 | 1946 | 12 | 222 | 2 | 0 | 0 | logfile |
✔ | 3JBY | 6488 | 2024-03-22 | 2015-10-22 | 3.7 | 3.78 | — | 3.8 | 0.015 | 1.57 | 0.0 | 0.07 | 20.89 | 0.01 | 2.015 | 24.71 | 5.74 | 4.2 | 95.5 | 0.3 | -3.60 | 0.77 | 0.83 | 2.24 | 3.7 | 0.003 | 0.73 | 0.0 | 0.04 | 21.40 | 0.00 | 2.109 | 15.87 | 2.53 | 4.3 | 95.4 | 0.3 | -0.27 | 0.85 | 0.75 | 0.83 | 1.45 | 16846 | 1802 | 12 | 124 | 6 | 0 | 0 | logfile |
✔ | 3JBX | 6487 | 2024-03-22 | 2015-10-22 | 3.4 | 3.51 | — | 3.6 | 0.006 | 1.24 | 1.0 | 0.05 | 21.20 | 0.01 | 1.816 | 16.75 | 11.74 | 6.1 | 93.8 | 0.1 | -3.11 | 0.75 | 0.80 | 2.08 | 3.6 | 0.003 | 0.71 | 0.0 | 0.04 | 21.23 | 0.00 | 2.086 | 16.68 | 3.47 | 4.5 | 95.4 | 0.1 | -0.43 | 0.78 | 0.74 | 0.82 | 1.84 | 16670 | 1802 | 14 | 116 | 6 | 0 | 0 | logfile |
✔ | 5FLM | 3218 | 2024-03-22 | 2015-10-26 | 3.4 | 3.52 | — | 3.5 | 0.004 | 0.74 | 0.0 | 0.05 | 11.66 | 0.00 | 2.034 | 14.71 | 0.00 | 5.1 | 94.9 | 0.0 | -2.61 | 0.51 | 0.66 | 2.61 | 3.5 | 0.004 | 0.64 | 0.0 | 0.04 | 16.19 | 0.00 | 2.003 | 9.36 | 2.63 | 5.1 | 94.8 | 0.1 | 0.15 | 1.52 | 0.68 | 0.84 | 1.71 | 32712 | 3896 | 21 | 80 | 9 | 0 | 0 | logfile |
✔ | 5FLX | 3221 | 2024-03-17 | 2015-10-28 | 3.9 | 4.33 | — | 4.3 | 0.003 | 0.71 | 3.0 | 0.05 | 21.37 | 0.00 | 0.894 | 15.92 | 0.19 | 6.8 | 92.6 | 0.6 | -2.97 | 0.42 | 0.58 | 0.37 | 4.2 | 0.003 | 0.76 | 0.0 | 0.04 | 22.79 | 0.01 | 1.866 | 21.86 | 4.80 | 8.7 | 90.8 | 0.5 | -1.51 | 1.50 | 0.47 | 0.80 | 0.51 | 80592 | 4810 | 40 | 1972 | 76 | 0 | 0 | logfile |
✔ | 5FLU | 3222 | 2024-03-16 | 2015-10-28 | 3.8 | 3.50 | — | 3.4 | 0.009 | 0.93 | 0.0 | 0.05 | 12.31 | 0.01 | 2.213 | 3.04 | 0.00 | 8.7 | 90.1 | 1.2 | -2.36 | 0.72 | 0.64 | 0.95 | 3.3 | 0.004 | 0.72 | 0.0 | 0.04 | 15.78 | 0.00 | 2.134 | 13.62 | 3.78 | 5.7 | 94.3 | 0.0 | -0.06 | 1.38 | 0.77 | 0.79 | 1.88 | 15132 | 2119 | 13 | 0 | 0 | 0 | 0 | logfile |
✔ | 5FMG | 3231 | 2024-03-23 | 2015-11-04 | 3.6 | 3.39 | — | 3.4 | 0.012 | 1.50 | 0.0 | 0.06 | 9.53 | 0.01 | 2.110 | 20.79 | 0.29 | 5.1 | 93.8 | 1.1 | -2.35 | 0.66 | 0.69 | 2.91 | 3.4 | 0.003 | 0.70 | 0.0 | 0.04 | 14.93 | 0.00 | 2.084 | 14.46 | 4.63 | 3.2 | 96.8 | 0.0 | -0.24 | 1.65 | 0.69 | 0.71 | 1.46 | 39334 | 5716 | 30 | 0 | 2 | 0 | 0 | logfile |
✔ | 3JC1 | 6461 | 2024-03-19 | 2015-11-09 | 4.0 | 4.30 | — | 4.3 | 0.009 | 1.19 | 0.0 | 0.05 | 10.37 | 0.00 | 2.291 | 8.81 | 0.00 | 3.8 | 96.2 | 0.0 | -3.91 | 0.31 | 0.59 | — | 4.3 | 0.004 | 0.65 | 0.0 | 0.04 | 16.21 | 0.00 | 2.171 | 10.22 | 2.89 | 1.8 | 98.2 | 0.0 | 3.43 | 1.22 | 0.44 | 0.76 | — | 92106 | 11628 | 68 | 0 | 0 | 0 | 0 | logfile |
✔ | 5FN3 | 3238 | 2024-03-15 | 2015-11-10 | 4.1 | 4.53 | — | 4.1 | 0.011 | 1.81 | 26.0 | 0.10 | 18.64 | 0.01 | 1.021 | 20.42 | 11.34 | 10.7 | 85.3 | 4.0 | -1.54 | 0.66 | 0.60 | — | 4.1 | 0.005 | 0.85 | 0.0 | 0.04 | 13.94 | 0.01 | 2.053 | 23.14 | 0.00 | 9.5 | 89.6 | 0.9 | -0.83 | 2.22 | 0.71 | 0.79 | — | 10291 | 1318 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 5FN4 | 3239 | 2024-03-14 | 2015-11-10 | 4.0 | 4.24 | — | 4.2 | 0.010 | 1.71 | 17.0 | 0.10 | 18.07 | 0.01 | 2.131 | 10.17 | 10.51 | 12.0 | 84.8 | 3.2 | -1.44 | 0.61 | 0.55 | — | 4.1 | 0.004 | 0.92 | 0.0 | 0.05 | 17.43 | 0.01 | 2.145 | 20.28 | 4.01 | 6.7 | 92.5 | 0.8 | -0.28 | 1.72 | 0.69 | 0.79 | — | 9776 | 1250 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 5FN1 | 3236 | 2024-03-12 | 2015-11-10 | 3.9 | 4.00 | — | 4.7 | 0.009 | 1.18 | 0.0 | 0.07 | 12.98 | 0.00 | 0.877 | 53.81 | 0.00 | 8.8 | 88.4 | 2.8 | -3.37 | 0.24 | 0.29 | 0.57 | 4.0 | 0.005 | 0.96 | 2.0 | 0.04 | 17.65 | 0.01 | 1.782 | 22.59 | 2.79 | 10.8 | 88.1 | 1.1 | -0.99 | 2.12 | 0.40 | 0.74 | 1.09 | 61308 | 3906 | 36 | 90 | 0 | 0 | 30078 | logfile |
✔ | 5FN5 | 3240 | 2024-03-14 | 2015-11-10 | 4.3 | 4.62 | — | 4.3 | 0.012 | 1.85 | 28.0 | 0.11 | 18.82 | 0.01 | 2.074 | 13.59 | 14.00 | 11.4 | 84.3 | 4.3 | -1.91 | 0.65 | 0.62 | — | 4.3 | 0.004 | 0.83 | 0.0 | 0.04 | 13.87 | 0.01 | 2.105 | 22.16 | 0.00 | 9.3 | 90.0 | 0.7 | -0.69 | 1.02 | 0.70 | 0.79 | — | 9645 | 1227 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5FN2 | 3237 | 2024-03-15 | 2015-11-10 | 4.2 | 4.23 | — | 4.2 | 0.009 | 1.73 | 23.0 | 0.10 | 17.98 | 0.01 | 1.890 | 19.04 | 11.69 | 11.9 | 84.1 | 3.9 | -1.77 | 0.48 | 0.55 | — | 4.2 | 0.004 | 0.90 | 0.0 | 0.05 | 14.22 | 0.01 | 2.187 | 22.19 | 0.18 | 8.4 | 90.7 | 0.9 | -1.17 | 1.09 | 0.59 | 0.73 | — | 10276 | 1309 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5FNA | 3241 | 2024-03-10 | 2015-11-11 | 4.8 | 4.43 | — | 4.2 | 0.013 | 1.51 | 0.0 | 0.08 | 12.32 | 0.01 | 2.219 | 36.54 | 0.00 | 6.0 | 94.0 | 0.0 | -1.83 | 0.48 | 0.71 | — | 4.2 | 0.003 | 0.80 | 0.0 | 0.04 | 13.82 | 0.00 | 2.287 | 18.96 | 0.00 | 7.2 | 92.8 | 0.0 | 0.38 | 1.93 | 0.50 | 0.78 | — | 5328 | 680 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JC2 | 3245 | 2024-03-10 | 2015-11-15 | 3.6 | 3.58 | 3.97 | 3.7 | 0.012 | 1.63 | 2.0 | 0.08 | 14.90 | 0.01 | 1.175 | 18.51 | 7.32 | 11.5 | 84.5 | 4.0 | -4.52 | 0.22 | 0.59 | 1.48 | 3.6 | 0.003 | 0.83 | 0.0 | 0.04 | 17.12 | 0.00 | 2.209 | 14.20 | 3.66 | 6.6 | 92.8 | 0.6 | -1.30 | 2.30 | 0.23 | 0.52 | 1.41 | 3911 | 482 | 4 | 0 | 32 | 0 | 0 | logfile |
✘ | 3JC5 | 6535 | 2024-03-24 | 2015-11-24 | 4.7 | 5.02 | — | 4.8 | 0.009 | 1.54 | 5.0 | 0.06 | 12.17 | 0.01 | 0.300 | 46.29 | 0.63 | 9.4 | 88.9 | 1.7 | -4.21 | 0.76 | 0.60 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40041 | 5039 | 11 | 0 | 0 | 0 | 0 | logfile |
✘ | 3JC6 | 6534 | 2024-03-19 | 2015-11-24 | 3.7 | 4.01 | — | 3.9 | 0.009 | 1.54 | 0.0 | 0.06 | 12.91 | 0.01 | 1.203 | 39.73 | 0.87 | 9.8 | 89.0 | 1.1 | -3.87 | 0.79 | 0.76 | 1.43 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 23732 | 2953 | 12 | 0 | 1 | 0 | 0 | logfile |
✔ | 5GAD | 8000 | 2024-03-20 | 2015-11-24 | 3.7 | 4.17 | — | 3.9 | 0.009 | 1.11 | 1.0 | 0.05 | 23.56 | 0.01 | 1.737 | 9.19 | 10.34 | 3.5 | 96.5 | 0.1 | -3.19 | 0.77 | 0.79 | 1.52 | 3.9 | 0.007 | 0.69 | 0.0 | 0.04 | 22.83 | 0.00 | 1.027 | 19.32 | 4.12 | 4.0 | 95.9 | 0.1 | -0.26 | 1.60 | 0.81 | 0.88 | 1.51 | 98006 | 4087 | 49 | 3049 | 507 | 0 | 0 | logfile |
✔ | 3JCA | 6441 | 2024-03-15 | 2015-11-24 | 4.8 | 4.59 | — | 4.5 | 0.012 | 1.49 | 0.0 | 0.07 | 18.84 | 0.01 | 2.370 | 2.63 | 0.00 | 7.2 | 92.8 | 0.0 | -1.87 | 0.75 | 0.75 | — | 4.5 | 0.003 | 0.65 | 0.0 | 0.04 | 19.35 | 0.00 | 2.135 | 14.52 | 0.19 | 4.6 | 95.4 | 0.0 | 0.14 | 2.45 | 0.76 | 0.76 | — | 11466 | 1226 | 16 | 80 | 4 | 0 | 0 | logfile |
✘ | 3JC7 | 6536 | 2024-03-24 | 2015-11-24 | 4.8 | 5.23 | — | 4.8 | 0.009 | 1.57 | 7.0 | 0.07 | 12.16 | 0.01 | 0.163 | 42.92 | 0.45 | 8.5 | 90.1 | 1.3 | -4.10 | 0.75 | 0.53 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 40298 | 5075 | 12 | 0 | 1 | 0 | 0 | logfile |