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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5GUP | 9539 | 2023-04-21 | 2016-08-30 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109982 | 13895 | 107 | 0 | 77 | 0 | 0 | logfile |
✔ | 5T62 | 8362 | 2023-04-27 | 2016-09-01 | 3.3 | 3.38 | — | 3.4 | 0.007 | 1.13 | 5.0 | 0.09 | 17.39 | 0.01 | 1.390 | 1.88 | 6.32 | 8.1 | 89.7 | 2.2 | -4.03 | 0.68 | 0.78 | 3.21 | 3.3 | 0.005 | 0.70 | 0.0 | 0.04 | 16.51 | 0.01 | 1.018 | 5.75 | 0.60 | 6.9 | 92.4 | 0.6 | -1.76 | 0.71 | 0.81 | 0.88 | 2.51 | 131766 | 7061 | 57 | 3483 | 438 | 6 | 0 | logfile |
✔ | 5T6R | 8368 | 2023-04-26 | 2016-09-01 | 4.2 | 4.31 | 4.24 | 4.2 | 0.007 | 1.05 | 1.0 | 0.09 | 16.99 | 0.00 | 1.229 | 1.49 | 5.55 | 7.5 | 90.6 | 1.9 | -3.58 | 0.82 | 0.80 | — | 4.2 | 0.003 | 0.60 | 0.0 | 0.03 | 15.58 | 0.00 | 1.858 | 10.94 | 0.02 | 6.5 | 93.0 | 0.5 | -1.08 | 1.57 | 0.83 | 0.80 | — | 126616 | 6441 | 51 | 3483 | 299 | 12 | 0 | logfile |
✔ | 5T7V | 8369 | 2023-04-25 | 2016-09-06 | 3.6 | 3.63 | — | 3.6 | 0.008 | 0.98 | 0.0 | 0.05 | 16.93 | 0.01 | 2.118 | 3.79 | 0.38 | 11.8 | 88.1 | 0.1 | -5.19 | 0.74 | 0.75 | 3.17 | 3.6 | 0.003 | 0.62 | 0.0 | 0.04 | 17.05 | 0.00 | 2.040 | 8.94 | 0.79 | 9.9 | 90.0 | 0.0 | -3.48 | 1.20 | 0.76 | 0.79 | 2.26 | 126001 | 4152 | 44 | 4375 | 17 | 0 | 0 | logfile |
✘ | 5GW5 | 9541 | 2023-04-22 | 2016-09-08 | 4.6 | 4.75 | — | 4.7 | 0.002 | 0.58 | 0.0 | 0.04 | 7.37 | 0.00 | 2.136 | 6.87 | 0.01 | 4.5 | 95.4 | 0.1 | -3.73 | 0.74 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 5GW4 | 9540 | 2023-04-22 | 2016-09-08 | 4.7 | 4.89 | — | 4.8 | 0.001 | 0.42 | 0.0 | 0.04 | 7.26 | 0.00 | 2.187 | 6.49 | 0.00 | 4.3 | 95.6 | 0.1 | -3.58 | 0.77 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 5T9S | 8375 | 2023-04-24 | 2016-09-09 | 4.2 | 4.32 | 4.62 | 4.2 | 0.004 | 0.88 | 0.0 | 0.05 | 9.86 | 0.01 | 1.373 | 3.99 | 0.50 | 10.3 | 89.5 | 0.1 | -5.16 | 0.72 | 0.73 | — | 4.2 | 0.005 | 0.79 | 0.0 | 0.04 | 12.46 | 0.00 | 2.092 | 15.41 | 0.00 | 13.6 | 86.3 | 0.1 | -2.08 | 0.92 | 0.73 | 0.76 | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✔ | 5T9N | 8373 | 2023-04-24 | 2016-09-09 | 3.8 | 4.02 | 4.06 | 3.8 | 0.005 | 0.89 | 0.0 | 0.05 | 9.92 | 0.01 | 1.373 | 3.76 | 0.50 | 10.3 | 89.6 | 0.2 | -5.47 | 0.76 | 0.78 | 1.96 | 3.8 | 0.004 | 0.77 | 0.0 | 0.04 | 14.00 | 0.00 | 2.101 | 11.84 | 0.34 | 11.8 | 88.1 | 0.2 | -1.67 | 0.83 | 0.76 | 0.81 | 1.25 | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✔ | 5TA3 | 8377 | 2023-04-24 | 2016-09-09 | 4.4 | 4.71 | 4.62 | 4.5 | 0.004 | 0.90 | 0.0 | 0.05 | 9.97 | 0.01 | 1.374 | 5.28 | 0.54 | 10.8 | 89.1 | 0.1 | -4.86 | 0.81 | 0.78 | — | 4.5 | 0.004 | 0.74 | 0.0 | 0.04 | 11.98 | 0.00 | 2.077 | 17.98 | 0.00 | 12.1 | 87.8 | 0.1 | -1.58 | 0.87 | 0.82 | 0.80 | — | 121456 | 13500 | 12 | 0 | 3720 | 0 | 0 | logfile |
✔ | 5T9V | 8376 | 2023-04-24 | 2016-09-09 | 4.4 | 4.79 | 4.75 | 4.5 | 0.004 | 0.90 | 4.0 | 0.05 | 9.94 | 0.01 | 1.374 | 5.64 | 0.54 | 10.5 | 89.3 | 0.2 | -4.84 | 0.81 | 0.78 | — | 4.5 | 0.003 | 0.72 | 0.0 | 0.04 | 11.70 | 0.00 | 2.114 | 16.07 | 0.00 | 10.7 | 89.1 | 0.1 | -1.35 | 0.84 | 0.82 | 0.80 | — | 121456 | 13500 | 12 | 0 | 3720 | 0 | 0 | logfile |
✔ | 5T9M | 8372 | 2023-04-24 | 2016-09-09 | 4.0 | 4.11 | 4.14 | 4.0 | 0.004 | 0.89 | 0.0 | 0.05 | 9.89 | 0.01 | 1.373 | 3.64 | 0.49 | 10.7 | 89.2 | 0.1 | -5.48 | 0.71 | 0.76 | — | 4.0 | 0.003 | 0.77 | 0.0 | 0.04 | 14.38 | 0.00 | 2.137 | 11.30 | 0.25 | 10.1 | 89.8 | 0.1 | -1.73 | 0.86 | 0.72 | 0.78 | — | 120756 | 13500 | 12 | 0 | 3608 | 0 | 0 | logfile |
✔ | 5TAP | 8381 | 2023-04-24 | 2016-09-10 | 4.4 | 4.55 | 4.56 | 4.4 | 0.004 | 0.88 | 4.0 | 0.05 | 9.99 | 0.01 | 1.373 | 4.46 | 0.54 | 9.9 | 89.9 | 0.2 | -4.98 | 0.78 | 0.77 | — | 4.4 | 0.004 | 0.77 | 0.0 | 0.04 | 12.22 | 0.00 | 1.982 | 15.17 | 0.02 | 11.9 | 88.1 | 0.1 | -1.73 | 0.87 | 0.78 | 0.79 | — | 121452 | 13500 | 12 | 0 | 3716 | 0 | 0 | logfile |
✘ | 5TAT | 8384 | 2023-04-24 | 2016-09-10 | 4.8 | 5.01 | 5.79 | 4.8 | 0.004 | 0.87 | 0.0 | 0.05 | 9.77 | 0.01 | 1.373 | 4.75 | 0.35 | 9.4 | 90.5 | 0.1 | -4.89 | 0.78 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 121452 | 13500 | 12 | 0 | 3716 | 0 | 0 | logfile |
✔ | 5TAN | 8380 | 2023-04-24 | 2016-09-10 | 4.3 | 4.50 | 4.44 | 4.3 | 0.005 | 0.91 | 4.0 | 0.05 | 9.88 | 0.01 | 1.372 | 5.67 | 0.47 | 10.4 | 89.4 | 0.2 | -4.91 | 0.80 | 0.79 | — | 4.3 | 0.004 | 0.76 | 0.0 | 0.04 | 12.20 | 0.00 | 2.099 | 15.22 | 0.01 | 11.3 | 88.6 | 0.1 | -1.53 | 1.51 | 0.81 | 0.81 | — | 121456 | 13500 | 12 | 0 | 3720 | 0 | 0 | logfile |
✔ | 5TAZ | 8390 | 2023-04-24 | 2016-09-10 | 4.3 | 4.46 | 4.86 | 4.3 | 0.004 | 0.86 | 4.0 | 0.05 | 9.92 | 0.01 | 1.373 | 4.79 | 0.58 | 10.2 | 89.6 | 0.2 | -5.04 | 0.74 | 0.73 | — | 4.3 | 0.005 | 0.81 | 0.0 | 0.04 | 12.08 | 0.00 | 2.051 | 18.58 | 0.00 | 12.9 | 86.9 | 0.2 | -2.20 | 0.91 | 0.76 | 0.77 | — | 121276 | 13500 | 12 | 0 | 3712 | 0 | 0 | logfile |
✘ | 5TAY | 8389 | 2023-04-24 | 2016-09-10 | 4.6 | 4.71 | 4.77 | 4.5 | 0.004 | 0.86 | 4.0 | 0.05 | 9.86 | 0.01 | 1.374 | 4.89 | 0.46 | 10.4 | 89.4 | 0.2 | -4.90 | 0.75 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 121276 | 13500 | 12 | 0 | 3712 | 0 | 0 | logfile |
✘ | 5TAV | 8386 | 2023-04-24 | 2016-09-10 | 4.8 | 4.96 | 5.58 | 4.7 | 0.004 | 0.89 | 4.0 | 0.05 | 9.80 | 0.01 | 1.373 | 4.75 | 0.39 | 9.7 | 90.1 | 0.2 | -4.80 | 0.77 | 0.76 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 121452 | 13500 | 12 | 0 | 3716 | 0 | 0 | logfile |
✔ | 5TAQ | 8382 | 2023-04-24 | 2016-09-10 | 4.1 | 4.24 | 4.25 | 4.1 | 0.005 | 0.97 | 0.0 | 0.05 | 10.16 | 0.01 | 1.373 | 4.58 | 0.43 | 10.9 | 88.9 | 0.2 | -5.26 | 0.76 | 0.78 | — | 4.1 | 0.005 | 0.79 | 0.0 | 0.04 | 12.30 | 0.00 | 2.046 | 14.49 | 0.00 | 12.5 | 87.4 | 0.1 | -1.92 | 1.94 | 0.77 | 0.80 | — | 121456 | 13500 | 12 | 0 | 3720 | 0 | 0 | logfile |
✔ | 5TAL | 8378 | 2023-04-24 | 2016-09-10 | 4.3 | 4.43 | 4.52 | 4.3 | 0.005 | 0.92 | 0.0 | 0.05 | 10.13 | 0.01 | 1.373 | 5.27 | 0.62 | 10.5 | 89.3 | 0.1 | -5.03 | 0.79 | 0.78 | — | 4.2 | 0.003 | 0.73 | 0.0 | 0.04 | 11.96 | 0.00 | 2.060 | 13.63 | 0.01 | 11.4 | 88.4 | 0.1 | -1.55 | 0.84 | 0.80 | 0.80 | — | 121456 | 13500 | 12 | 0 | 3720 | 0 | 0 | logfile |
✔ | 5TAW | 8387 | 2023-04-24 | 2016-09-10 | 4.4 | 4.49 | 4.56 | 4.2 | 0.004 | 0.86 | 0.0 | 0.05 | 9.82 | 0.01 | 1.373 | 5.05 | 0.39 | 10.3 | 89.5 | 0.2 | -4.87 | 0.79 | 0.75 | — | 4.2 | 0.005 | 0.79 | 0.0 | 0.04 | 11.93 | 0.00 | 2.017 | 18.09 | 0.00 | 13.0 | 86.9 | 0.1 | -1.94 | 1.99 | 0.80 | 0.79 | — | 121276 | 13500 | 12 | 0 | 3712 | 0 | 0 | logfile |