Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5iYD	8138	2023-07-19	2016-03-24	3.9	3.83	—	3.9	0.011	1.73	8.0	0.08	17.24	0.01	0.526	22.15	3.28	8.5	87.8	3.8	-2.10	0.70	0.62	1.39	3.8	0.005	0.98	0.0	0.05	19.19	0.01	1.852	23.09	0.73	8.6	90.7	0.7	-1.08	1.15	0.79	0.80	1.05	46709	5407	31	166	13	0	0	logfile
✔	3JCZ	6630	2023-07-11	2016-03-27	3.26	3.11	—	3.3	0.008	0.69	0.0	0.05	7.32	0.01	2.244	8.75	0.00	7.0	93.0	0.0	-4.42	0.77	0.85	4.34	3.3	0.003	0.61	0.0	0.04	13.77	0.00	2.108	9.79	0.28	4.4	95.6	0.0	-0.27	2.05	0.78	0.87	2.10	23286	2976	6	0	0	0	0	logfile
✔	3JD2	6635	2023-07-11	2016-03-28	3.3	2.95	—	2.9	0.011	1.04	0.0	0.06	8.84	0.01	2.219	10.21	0.72	5.6	93.6	0.8	-5.54	0.80	0.83	3.54	2.8	0.004	0.60	0.0	0.04	14.29	0.00	2.187	9.17	0.44	4.1	95.9	0.0	0.18	1.19	0.81	0.87	2.36	23814	2976	12	0	12	0	0	logfile
✔	3JD0	6631	2023-07-11	2016-03-28	3.47	3.93	—	3.8	0.012	0.82	0.0	0.05	10.31	0.00	1.989	15.40	0.00	13.3	85.9	0.8	-5.89	0.85	0.82	3.48	3.8	0.004	0.70	0.0	0.04	14.28	0.00	2.128	14.60	0.16	4.9	94.9	0.1	0.69	2.53	0.85	0.86	2.35	23478	2976	12	0	6	0	0	logfile
✔	3JD3	6632	2023-07-11	2016-03-28	3.6	3.38	—	3.5	0.011	1.02	0.0	0.06	11.40	0.01	2.125	18.17	0.00	10.7	89.3	0.0	-5.32	0.81	0.80	2.72	3.2	0.003	0.65	0.0	0.04	15.34	0.00	2.140	12.61	0.28	4.0	96.0	0.0	-0.42	1.00	0.81	0.83	2.27	24006	2976	12	0	18	0	0	logfile
✔	3JD1	6634	2023-07-11	2016-03-28	3.3	2.71	—	3.0	0.015	1.01	0.0	0.06	8.10	0.01	1.935	12.60	0.00	8.2	91.6	0.2	-5.08	0.79	0.80	3.01	2.5	0.004	0.68	0.0	0.04	15.21	0.00	2.159	9.66	0.28	2.8	97.2	0.0	0.47	1.81	0.80	0.85	2.00	23814	2976	12	0	12	0	0	logfile
✔	3JD4	6633	2023-07-11	2016-03-28	3.4	3.40	—	3.4	0.009	0.96	0.0	0.05	10.21	0.00	2.157	15.60	0.00	6.8	93.0	0.2	-4.82	0.80	0.86	3.90	3.4	0.004	0.63	0.0	0.04	15.60	0.00	2.026	11.75	0.32	3.9	96.1	0.0	0.50	0.72	0.80	0.87	2.40	24054	2982	12	0	18	0	0	logfile
✔	5J8V	8073	2023-07-11	2016-04-08	4.9	4.81	—	4.7	0.024	2.67	214.0	0.16	10.17	0.01	1.145	73.68	28.71	6.2	86.5	7.3	2.50	0.71	0.67	—	4.7	0.003	0.96	4.0	0.04	9.37	0.00	2.173	6.74	0.32	9.5	88.8	1.7	0.19	0.81	0.75	0.74	—	73616	13812	4	0	0	0	0	logfile
✔	3JD6	6425	2023-07-18	2016-04-12	4.1	5.00	—	4.6	0.026	2.70	32.0	0.12	14.71	0.02	1.693	5.06	0.00	13.3	86.1	0.6	-3.14	0.60	0.42	—	4.3	0.004	0.73	0.0	0.04	13.73	0.00	1.904	14.36	0.00	17.3	82.7	0.0	-2.33	2.17	0.85	0.80	—	43088	2672	16	0	0	0	21216	logfile
✔	5G2X	3331	2023-07-09	2016-04-16	3.8	3.49	—	3.4	0.001	0.32	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.005	0.87	0.0	0.04	19.17	0.01	1.949	36.81	0.45	21.6	77.1	1.3	-5.19	1.94	0.80	0.66	0.50	19072	487	3	704	0	0	0	logfile
✔	5G2Y	3332	2023-07-06	2016-04-16	4.5	4.38	—	3.8	0.001	0.22	0.0	0.01	11.90	0.00	2.269	2.32	0.00	0.0	0.0	0.0	—	0.58	0.28	—	3.7	0.007	1.02	0.0	0.05	23.60	0.01	1.933	73.59	0.00	0.0	0.0	0.0	—	2.96	0.89	0.78	—	13494	0	1	630	0	0	0	logfile
✔	5JLF	8162	2023-07-08	2016-04-27	3.6	3.99	—	3.7	0.013	1.58	17.0	0.11	12.26	0.01	2.184	9.01	1.29	2.9	96.6	0.6	-0.70	0.67	0.69	2.49	3.7	0.004	0.77	0.0	0.04	14.98	0.00	1.921	15.48	0.39	3.8	96.0	0.3	-0.38	1.42	0.70	0.75	2.02	15800	1835	12	0	280	0	0	logfile
✔	5JLF	8163	2023-07-08	2016-04-27	3.6	3.82	—	3.7	0.013	1.58	17.0	0.11	12.26	0.01	2.184	9.01	1.29	2.9	96.6	0.6	-0.70	0.64	0.74	2.52	3.7	0.004	0.74	0.0	0.04	15.08	0.00	1.930	13.10	0.45	3.6	96.1	0.3	0.05	1.43	0.68	0.84	1.89	15800	1835	12	0	280	0	0	logfile
✔	3JD8	6640	2023-07-05	2016-05-01	4.43	4.58	—	4.4	0.015	1.56	5.0	0.13	16.87	0.02	1.335	78.13	11.82	11.9	79.7	8.4	-3.27	0.54	0.62	—	4.4	0.005	0.96	0.0	0.05	12.46	0.00	2.015	23.00	0.00	9.8	89.4	0.8	-1.20	1.21	0.57	0.73	—	8050	1133	7	0	25	0	0	logfile
✔	5JTE	8175	2023-07-21	2016-05-09	3.6	3.13	—	3.2	0.015	1.75	0.0	0.07	12.22	0.01	1.432	6.25	0.00	7.4	90.0	2.7	-1.94	0.53	0.56	0.78	3.1	0.006	0.90	0.0	0.05	16.17	0.01	2.025	16.45	1.18	10.2	89.1	0.8	-2.75	1.48	0.58	0.68	1.21	146760	5625	59	4786	1	0	0	logfile
✔	5JU8	8176	2023-07-19	2016-05-10	3.6	3.15	—	3.2	0.015	1.74	0.0	0.07	12.18	0.01	1.433	6.13	0.00	7.3	90.0	2.7	-1.92	0.64	0.62	0.69	3.1	0.004	0.75	0.0	0.04	15.79	0.01	1.938	15.92	0.74	8.8	90.5	0.7	-2.09	1.83	0.69	0.74	1.19	145158	5624	57	4712	1	0	0	logfile
✔	5JUY	8178	2023-07-12	2016-05-10	4.1	4.28	—	4.1	0.009	1.23	0.0	0.05	10.72	0.00	1.447	16.11	0.71	6.6	93.0	0.4	-3.18	0.76	0.55	—	4.1	0.003	0.66	0.0	0.04	12.04	0.00	2.092	12.45	0.00	5.3	94.6	0.1	-0.61	1.62	0.84	0.69	—	76058	9461	32	0	14	0	0	logfile
✔	5JZH	8185	2023-07-15	2016-05-16	3.9	4.02	—	4.0	0.015	2.15	0.0	0.08	10.55	0.02	1.650	4.16	0.00	9.4	87.9	2.7	-1.57	0.81	0.81	2.71	4.0	0.003	0.63	0.0	0.04	14.24	0.00	1.878	8.40	0.12	7.7	92.3	0.0	-1.12	0.97	0.78	0.84	1.97	90790	5936	14	0	0	0	44226	logfile
✔	5K11	8193	2023-07-06	2016-05-17	3.8	4.50	—	3.8	0.012	1.23	0.0	0.06	12.12	0.01	2.061	29.53	0.30	6.1	93.4	0.5	-4.89	0.80	0.59	1.53	3.8	0.004	0.88	0.0	0.05	15.49	0.00	2.139	21.59	0.15	4.5	95.5	0.0	-0.28	1.64	0.90	0.84	1.22	6338	794	4	0	2	0	0	logfile
✔	5K10	8192	2023-07-06	2016-05-17	3.8	4.74	—	3.8	0.009	0.93	0.0	0.06	12.22	0.02	2.138	33.42	0.30	6.9	92.6	0.5	-4.07	0.80	0.57	0.98	3.8	0.004	0.84	0.0	0.04	16.04	0.00	2.197	24.77	0.15	3.7	96.0	0.3	-0.14	1.89	0.92	0.86	1.02	6338	794	4	0	2	0	0	logfile

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