The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5iYD | 8138 | 2023-07-19 | 2016-03-24 | 3.9 | 3.83 | — | 3.9 | 0.011 | 1.73 | 8.0 | 0.08 | 17.24 | 0.01 | 0.526 | 22.15 | 3.28 | 8.5 | 87.8 | 3.8 | -2.10 | 0.70 | 0.62 | 1.39 | 3.8 | 0.005 | 0.98 | 0.0 | 0.05 | 19.19 | 0.01 | 1.852 | 23.09 | 0.73 | 8.6 | 90.7 | 0.7 | -1.08 | 1.15 | 0.79 | 0.80 | 1.05 | 46709 | 5407 | 31 | 166 | 13 | 0 | 0 | logfile |
✔ | 3JCZ | 6630 | 2023-07-11 | 2016-03-27 | 3.26 | 3.11 | — | 3.3 | 0.008 | 0.69 | 0.0 | 0.05 | 7.32 | 0.01 | 2.244 | 8.75 | 0.00 | 7.0 | 93.0 | 0.0 | -4.42 | 0.77 | 0.85 | 4.34 | 3.3 | 0.003 | 0.61 | 0.0 | 0.04 | 13.77 | 0.00 | 2.108 | 9.79 | 0.28 | 4.4 | 95.6 | 0.0 | -0.27 | 2.05 | 0.78 | 0.87 | 2.10 | 23286 | 2976 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JD2 | 6635 | 2023-07-11 | 2016-03-28 | 3.3 | 2.95 | — | 2.9 | 0.011 | 1.04 | 0.0 | 0.06 | 8.84 | 0.01 | 2.219 | 10.21 | 0.72 | 5.6 | 93.6 | 0.8 | -5.54 | 0.80 | 0.83 | 3.54 | 2.8 | 0.004 | 0.60 | 0.0 | 0.04 | 14.29 | 0.00 | 2.187 | 9.17 | 0.44 | 4.1 | 95.9 | 0.0 | 0.18 | 1.19 | 0.81 | 0.87 | 2.36 | 23814 | 2976 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 3JD0 | 6631 | 2023-07-11 | 2016-03-28 | 3.47 | 3.93 | — | 3.8 | 0.012 | 0.82 | 0.0 | 0.05 | 10.31 | 0.00 | 1.989 | 15.40 | 0.00 | 13.3 | 85.9 | 0.8 | -5.89 | 0.85 | 0.82 | 3.48 | 3.8 | 0.004 | 0.70 | 0.0 | 0.04 | 14.28 | 0.00 | 2.128 | 14.60 | 0.16 | 4.9 | 94.9 | 0.1 | 0.69 | 2.53 | 0.85 | 0.86 | 2.35 | 23478 | 2976 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 3JD3 | 6632 | 2023-07-11 | 2016-03-28 | 3.6 | 3.38 | — | 3.5 | 0.011 | 1.02 | 0.0 | 0.06 | 11.40 | 0.01 | 2.125 | 18.17 | 0.00 | 10.7 | 89.3 | 0.0 | -5.32 | 0.81 | 0.80 | 2.72 | 3.2 | 0.003 | 0.65 | 0.0 | 0.04 | 15.34 | 0.00 | 2.140 | 12.61 | 0.28 | 4.0 | 96.0 | 0.0 | -0.42 | 1.00 | 0.81 | 0.83 | 2.27 | 24006 | 2976 | 12 | 0 | 18 | 0 | 0 | logfile |
✔ | 3JD1 | 6634 | 2023-07-11 | 2016-03-28 | 3.3 | 2.71 | — | 3.0 | 0.015 | 1.01 | 0.0 | 0.06 | 8.10 | 0.01 | 1.935 | 12.60 | 0.00 | 8.2 | 91.6 | 0.2 | -5.08 | 0.79 | 0.80 | 3.01 | 2.5 | 0.004 | 0.68 | 0.0 | 0.04 | 15.21 | 0.00 | 2.159 | 9.66 | 0.28 | 2.8 | 97.2 | 0.0 | 0.47 | 1.81 | 0.80 | 0.85 | 2.00 | 23814 | 2976 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 3JD4 | 6633 | 2023-07-11 | 2016-03-28 | 3.4 | 3.40 | — | 3.4 | 0.009 | 0.96 | 0.0 | 0.05 | 10.21 | 0.00 | 2.157 | 15.60 | 0.00 | 6.8 | 93.0 | 0.2 | -4.82 | 0.80 | 0.86 | 3.90 | 3.4 | 0.004 | 0.63 | 0.0 | 0.04 | 15.60 | 0.00 | 2.026 | 11.75 | 0.32 | 3.9 | 96.1 | 0.0 | 0.50 | 0.72 | 0.80 | 0.87 | 2.40 | 24054 | 2982 | 12 | 0 | 18 | 0 | 0 | logfile |
✔ | 5J8V | 8073 | 2023-07-11 | 2016-04-08 | 4.9 | 4.81 | — | 4.7 | 0.024 | 2.67 | 214.0 | 0.16 | 10.17 | 0.01 | 1.145 | 73.68 | 28.71 | 6.2 | 86.5 | 7.3 | 2.50 | 0.71 | 0.67 | — | 4.7 | 0.003 | 0.96 | 4.0 | 0.04 | 9.37 | 0.00 | 2.173 | 6.74 | 0.32 | 9.5 | 88.8 | 1.7 | 0.19 | 0.81 | 0.75 | 0.74 | — | 73616 | 13812 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JD6 | 6425 | 2023-07-18 | 2016-04-12 | 4.1 | 5.00 | — | 4.6 | 0.026 | 2.70 | 32.0 | 0.12 | 14.71 | 0.02 | 1.693 | 5.06 | 0.00 | 13.3 | 86.1 | 0.6 | -3.14 | 0.60 | 0.42 | — | 4.3 | 0.004 | 0.73 | 0.0 | 0.04 | 13.73 | 0.00 | 1.904 | 14.36 | 0.00 | 17.3 | 82.7 | 0.0 | -2.33 | 2.17 | 0.85 | 0.80 | — | 43088 | 2672 | 16 | 0 | 0 | 0 | 21216 | logfile |
✔ | 5G2X | 3331 | 2023-07-09 | 2016-04-16 | 3.8 | 3.49 | — | 3.4 | 0.001 | 0.32 | 0.0 | 0.02 | 11.56 | 0.00 | 2.219 | 4.36 | 0.45 | 19.7 | 74.4 | 5.9 | -5.72 | 0.51 | 0.30 | -0.09 | 3.3 | 0.005 | 0.87 | 0.0 | 0.04 | 19.17 | 0.01 | 1.949 | 36.81 | 0.45 | 21.6 | 77.1 | 1.3 | -5.19 | 1.94 | 0.80 | 0.66 | 0.50 | 19072 | 487 | 3 | 704 | 0 | 0 | 0 | logfile |
✔ | 5G2Y | 3332 | 2023-07-06 | 2016-04-16 | 4.5 | 4.38 | — | 3.8 | 0.001 | 0.22 | 0.0 | 0.01 | 11.90 | 0.00 | 2.269 | 2.32 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.58 | 0.28 | — | 3.7 | 0.007 | 1.02 | 0.0 | 0.05 | 23.60 | 0.01 | 1.933 | 73.59 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.96 | 0.89 | 0.78 | — | 13494 | 0 | 1 | 630 | 0 | 0 | 0 | logfile |
✔ | 5JLF | 8162 | 2023-07-08 | 2016-04-27 | 3.6 | 3.99 | — | 3.7 | 0.013 | 1.58 | 17.0 | 0.11 | 12.26 | 0.01 | 2.184 | 9.01 | 1.29 | 2.9 | 96.6 | 0.6 | -0.70 | 0.67 | 0.69 | 2.49 | 3.7 | 0.004 | 0.77 | 0.0 | 0.04 | 14.98 | 0.00 | 1.921 | 15.48 | 0.39 | 3.8 | 96.0 | 0.3 | -0.38 | 1.42 | 0.70 | 0.75 | 2.02 | 15800 | 1835 | 12 | 0 | 280 | 0 | 0 | logfile |
✔ | 5JLF | 8163 | 2023-07-08 | 2016-04-27 | 3.6 | 3.82 | — | 3.7 | 0.013 | 1.58 | 17.0 | 0.11 | 12.26 | 0.01 | 2.184 | 9.01 | 1.29 | 2.9 | 96.6 | 0.6 | -0.70 | 0.64 | 0.74 | 2.52 | 3.7 | 0.004 | 0.74 | 0.0 | 0.04 | 15.08 | 0.00 | 1.930 | 13.10 | 0.45 | 3.6 | 96.1 | 0.3 | 0.05 | 1.43 | 0.68 | 0.84 | 1.89 | 15800 | 1835 | 12 | 0 | 280 | 0 | 0 | logfile |
✔ | 3JD8 | 6640 | 2023-07-05 | 2016-05-01 | 4.43 | 4.58 | — | 4.4 | 0.015 | 1.56 | 5.0 | 0.13 | 16.87 | 0.02 | 1.335 | 78.13 | 11.82 | 11.9 | 79.7 | 8.4 | -3.27 | 0.54 | 0.62 | — | 4.4 | 0.005 | 0.96 | 0.0 | 0.05 | 12.46 | 0.00 | 2.015 | 23.00 | 0.00 | 9.8 | 89.4 | 0.8 | -1.20 | 1.21 | 0.57 | 0.73 | — | 8050 | 1133 | 7 | 0 | 25 | 0 | 0 | logfile |
✔ | 5JTE | 8175 | 2023-07-21 | 2016-05-09 | 3.6 | 3.13 | — | 3.2 | 0.015 | 1.75 | 0.0 | 0.07 | 12.22 | 0.01 | 1.432 | 6.25 | 0.00 | 7.4 | 90.0 | 2.7 | -1.94 | 0.53 | 0.56 | 0.78 | 3.1 | 0.006 | 0.90 | 0.0 | 0.05 | 16.17 | 0.01 | 2.025 | 16.45 | 1.18 | 10.2 | 89.1 | 0.8 | -2.75 | 1.48 | 0.58 | 0.68 | 1.21 | 146760 | 5625 | 59 | 4786 | 1 | 0 | 0 | logfile |
✔ | 5JU8 | 8176 | 2023-07-19 | 2016-05-10 | 3.6 | 3.15 | — | 3.2 | 0.015 | 1.74 | 0.0 | 0.07 | 12.18 | 0.01 | 1.433 | 6.13 | 0.00 | 7.3 | 90.0 | 2.7 | -1.92 | 0.64 | 0.62 | 0.69 | 3.1 | 0.004 | 0.75 | 0.0 | 0.04 | 15.79 | 0.01 | 1.938 | 15.92 | 0.74 | 8.8 | 90.5 | 0.7 | -2.09 | 1.83 | 0.69 | 0.74 | 1.19 | 145158 | 5624 | 57 | 4712 | 1 | 0 | 0 | logfile |
✔ | 5JUY | 8178 | 2023-07-12 | 2016-05-10 | 4.1 | 4.28 | — | 4.1 | 0.009 | 1.23 | 0.0 | 0.05 | 10.72 | 0.00 | 1.447 | 16.11 | 0.71 | 6.6 | 93.0 | 0.4 | -3.18 | 0.76 | 0.55 | — | 4.1 | 0.003 | 0.66 | 0.0 | 0.04 | 12.04 | 0.00 | 2.092 | 12.45 | 0.00 | 5.3 | 94.6 | 0.1 | -0.61 | 1.62 | 0.84 | 0.69 | — | 76058 | 9461 | 32 | 0 | 14 | 0 | 0 | logfile |
✔ | 5JZH | 8185 | 2023-07-15 | 2016-05-16 | 3.9 | 4.02 | — | 4.0 | 0.015 | 2.15 | 0.0 | 0.08 | 10.55 | 0.02 | 1.650 | 4.16 | 0.00 | 9.4 | 87.9 | 2.7 | -1.57 | 0.81 | 0.81 | 2.71 | 4.0 | 0.003 | 0.63 | 0.0 | 0.04 | 14.24 | 0.00 | 1.878 | 8.40 | 0.12 | 7.7 | 92.3 | 0.0 | -1.12 | 0.97 | 0.78 | 0.84 | 1.97 | 90790 | 5936 | 14 | 0 | 0 | 0 | 44226 | logfile |
✔ | 5K11 | 8193 | 2023-07-06 | 2016-05-17 | 3.8 | 4.50 | — | 3.8 | 0.012 | 1.23 | 0.0 | 0.06 | 12.12 | 0.01 | 2.061 | 29.53 | 0.30 | 6.1 | 93.4 | 0.5 | -4.89 | 0.80 | 0.59 | 1.53 | 3.8 | 0.004 | 0.88 | 0.0 | 0.05 | 15.49 | 0.00 | 2.139 | 21.59 | 0.15 | 4.5 | 95.5 | 0.0 | -0.28 | 1.64 | 0.90 | 0.84 | 1.22 | 6338 | 794 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 5K10 | 8192 | 2023-07-06 | 2016-05-17 | 3.8 | 4.74 | — | 3.8 | 0.009 | 0.93 | 0.0 | 0.06 | 12.22 | 0.02 | 2.138 | 33.42 | 0.30 | 6.9 | 92.6 | 0.5 | -4.07 | 0.80 | 0.57 | 0.98 | 3.8 | 0.004 | 0.84 | 0.0 | 0.04 | 16.04 | 0.00 | 2.197 | 24.77 | 0.15 | 3.7 | 96.0 | 0.3 | -0.14 | 1.89 | 0.92 | 0.86 | 1.02 | 6338 | 794 | 4 | 0 | 2 | 0 | 0 | logfile |