Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	5GUP	9539	2023-04-21	2016-08-30	4.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	109982	13895	107	0	77	0	0	logfile
✔	5T62	8362	2023-04-27	2016-09-01	3.3	3.38	—	3.4	0.007	1.13	5.0	0.09	17.39	0.01	1.390	1.88	6.32	8.1	89.7	2.2	-4.03	0.68	0.78	3.21	3.3	0.005	0.70	0.0	0.04	16.51	0.01	1.018	5.75	0.60	6.9	92.4	0.6	-1.76	0.71	0.81	0.88	2.51	131766	7061	57	3483	438	6	0	logfile
✔	5T6R	8368	2023-04-26	2016-09-01	4.2	4.31	4.24	4.2	0.007	1.05	1.0	0.09	16.99	0.00	1.229	1.49	5.55	7.5	90.6	1.9	-3.58	0.82	0.80	—	4.2	0.003	0.60	0.0	0.03	15.58	0.00	1.858	10.94	0.02	6.5	93.0	0.5	-1.08	1.57	0.83	0.80	—	126616	6441	51	3483	299	12	0	logfile
✔	5T7V	8369	2023-04-25	2016-09-06	3.6	3.63	—	3.6	0.008	0.98	0.0	0.05	16.93	0.01	2.118	3.79	0.38	11.8	88.1	0.1	-5.19	0.74	0.75	3.17	3.6	0.003	0.62	0.0	0.04	17.05	0.00	2.040	8.94	0.79	9.9	90.0	0.0	-3.48	1.20	0.76	0.79	2.26	126001	4152	44	4375	17	0	0	logfile
✘	5GW5	9541	2023-04-22	2016-09-08	4.6	4.75	—	4.7	0.002	0.58	0.0	0.04	7.37	0.00	2.136	6.87	0.01	4.5	95.4	0.1	-3.73	0.74	0.64	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✘	5GW4	9540	2023-04-22	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.49	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	64544	8446	16	0	0	0	0	logfile
✔	5T9S	8375	2023-04-24	2016-09-09	4.2	4.32	4.62	4.2	0.004	0.88	0.0	0.05	9.86	0.01	1.373	3.99	0.50	10.3	89.5	0.1	-5.16	0.72	0.73	—	4.2	0.005	0.79	0.0	0.04	12.46	0.00	2.092	15.41	0.00	13.6	86.3	0.1	-2.08	0.92	0.73	0.76	—	120756	13500	12	0	3608	0	0	logfile
✔	5T9N	8373	2023-04-24	2016-09-09	3.8	4.02	4.06	3.8	0.005	0.89	0.0	0.05	9.92	0.01	1.373	3.76	0.50	10.3	89.6	0.2	-5.47	0.76	0.78	1.96	3.8	0.004	0.77	0.0	0.04	14.00	0.00	2.101	11.84	0.34	11.8	88.1	0.2	-1.67	0.83	0.76	0.81	1.25	120756	13500	12	0	3608	0	0	logfile
✔	5TA3	8377	2023-04-24	2016-09-09	4.4	4.71	4.62	4.5	0.004	0.90	0.0	0.05	9.97	0.01	1.374	5.28	0.54	10.8	89.1	0.1	-4.86	0.81	0.78	—	4.5	0.004	0.74	0.0	0.04	11.98	0.00	2.077	17.98	0.00	12.1	87.8	0.1	-1.58	0.87	0.82	0.80	—	121456	13500	12	0	3720	0	0	logfile
✔	5T9V	8376	2023-04-24	2016-09-09	4.4	4.79	4.75	4.5	0.004	0.90	4.0	0.05	9.94	0.01	1.374	5.64	0.54	10.5	89.3	0.2	-4.84	0.81	0.78	—	4.5	0.003	0.72	0.0	0.04	11.70	0.00	2.114	16.07	0.00	10.7	89.1	0.1	-1.35	0.84	0.82	0.80	—	121456	13500	12	0	3720	0	0	logfile
✔	5T9M	8372	2023-04-24	2016-09-09	4.0	4.11	4.14	4.0	0.004	0.89	0.0	0.05	9.89	0.01	1.373	3.64	0.49	10.7	89.2	0.1	-5.48	0.71	0.76	—	4.0	0.003	0.77	0.0	0.04	14.38	0.00	2.137	11.30	0.25	10.1	89.8	0.1	-1.73	0.86	0.72	0.78	—	120756	13500	12	0	3608	0	0	logfile
✔	5TAP	8381	2023-04-24	2016-09-10	4.4	4.55	4.56	4.4	0.004	0.88	4.0	0.05	9.99	0.01	1.373	4.46	0.54	9.9	89.9	0.2	-4.98	0.78	0.77	—	4.4	0.004	0.77	0.0	0.04	12.22	0.00	1.982	15.17	0.02	11.9	88.1	0.1	-1.73	0.87	0.78	0.79	—	121452	13500	12	0	3716	0	0	logfile
✘	5TAT	8384	2023-04-24	2016-09-10	4.8	5.01	5.79	4.8	0.004	0.87	0.0	0.05	9.77	0.01	1.373	4.75	0.35	9.4	90.5	0.1	-4.89	0.78	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	121452	13500	12	0	3716	0	0	logfile
✔	5TAN	8380	2023-04-24	2016-09-10	4.3	4.50	4.44	4.3	0.005	0.91	4.0	0.05	9.88	0.01	1.372	5.67	0.47	10.4	89.4	0.2	-4.91	0.80	0.79	—	4.3	0.004	0.76	0.0	0.04	12.20	0.00	2.099	15.22	0.01	11.3	88.6	0.1	-1.53	1.51	0.81	0.81	—	121456	13500	12	0	3720	0	0	logfile
✔	5TAZ	8390	2023-04-24	2016-09-10	4.3	4.46	4.86	4.3	0.004	0.86	4.0	0.05	9.92	0.01	1.373	4.79	0.58	10.2	89.6	0.2	-5.04	0.74	0.73	—	4.3	0.005	0.81	0.0	0.04	12.08	0.00	2.051	18.58	0.00	12.9	86.9	0.2	-2.20	0.91	0.76	0.77	—	121276	13500	12	0	3712	0	0	logfile
✘	5TAY	8389	2023-04-24	2016-09-10	4.6	4.71	4.77	4.5	0.004	0.86	4.0	0.05	9.86	0.01	1.374	4.89	0.46	10.4	89.4	0.2	-4.90	0.75	0.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	121276	13500	12	0	3712	0	0	logfile
✘	5TAV	8386	2023-04-24	2016-09-10	4.8	4.96	5.58	4.7	0.004	0.89	4.0	0.05	9.80	0.01	1.373	4.75	0.39	9.7	90.1	0.2	-4.80	0.77	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	121452	13500	12	0	3716	0	0	logfile
✔	5TAQ	8382	2023-04-24	2016-09-10	4.1	4.24	4.25	4.1	0.005	0.97	0.0	0.05	10.16	0.01	1.373	4.58	0.43	10.9	88.9	0.2	-5.26	0.76	0.78	—	4.1	0.005	0.79	0.0	0.04	12.30	0.00	2.046	14.49	0.00	12.5	87.4	0.1	-1.92	1.94	0.77	0.80	—	121456	13500	12	0	3720	0	0	logfile
✔	5TAL	8378	2023-04-24	2016-09-10	4.3	4.43	4.52	4.3	0.005	0.92	0.0	0.05	10.13	0.01	1.373	5.27	0.62	10.5	89.3	0.1	-5.03	0.79	0.78	—	4.2	0.003	0.73	0.0	0.04	11.96	0.00	2.060	13.63	0.01	11.4	88.4	0.1	-1.55	0.84	0.80	0.80	—	121456	13500	12	0	3720	0	0	logfile
✔	5TAW	8387	2023-04-24	2016-09-10	4.4	4.49	4.56	4.2	0.004	0.86	0.0	0.05	9.82	0.01	1.373	5.05	0.39	10.3	89.5	0.2	-4.87	0.79	0.75	—	4.2	0.005	0.79	0.0	0.04	11.93	0.00	2.017	18.09	0.00	13.0	86.9	0.1	-1.94	1.99	0.80	0.79	—	121276	13500	12	0	3712	0	0	logfile

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