Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5FTK	3296	2022-12-19	2016-01-14	2.4	2.04	—	2.0	0.011	1.39	0.0	0.07	12.31	0.01	2.216	25.10	0.65	6.1	93.5	0.4	-4.37	0.44	0.66	3.22	2.0	0.004	0.86	0.0	0.05	17.71	0.01	2.108	17.11	3.82	8.6	91.3	0.1	-1.94	1.08	0.49	0.69	1.72	34374	4338	18	0	12	96	0	logfile
✔	5FTM	3298	2022-12-19	2016-01-14	3.2	2.96	—	2.9	0.014	1.34	1.0	0.07	11.93	0.02	2.163	23.59	0.51	7.6	91.7	0.7	-4.68	0.71	0.82	2.33	2.9	0.003	0.73	0.0	0.04	15.84	0.00	2.105	11.84	0.40	6.9	92.9	0.3	-1.09	1.30	0.71	0.81	1.55	34554	4368	12	0	18	0	0	logfile
✔	5FTN	3299	2022-12-19	2016-01-14	3.3	2.95	—	2.9	0.012	1.27	0.0	0.07	10.98	0.01	2.234	22.51	0.32	7.4	91.7	1.0	-4.38	0.62	0.80	3.11	2.9	0.003	0.74	0.0	0.04	15.52	0.01	1.891	11.55	0.19	8.2	91.3	0.5	-0.54	1.29	0.63	0.80	2.22	34956	4422	12	0	24	0	0	logfile
✔	5FUU	3308	2022-12-14	2016-01-29	4.19	4.30	—	4.2	0.013	1.78	3.0	0.11	10.98	0.02	1.862	17.54	1.20	6.2	92.2	1.7	-2.38	0.69	0.72	—	4.2	0.003	0.77	0.0	0.05	12.03	0.00	2.070	12.68	0.05	6.6	92.9	0.5	-1.02	0.94	0.76	0.82	—	20735	2281	70	0	213	0	0	logfile
✔	5i08	8069	2022-12-14	2016-02-03	4.04	4.14	3.96	4.1	0.014	1.74	3.0	0.09	8.79	0.01	2.174	3.55	0.00	7.0	92.1	0.8	0.56	0.70	0.71	—	4.1	0.003	0.77	0.0	0.04	12.28	0.00	2.195	9.92	0.08	9.6	89.9	0.6	-1.29	1.60	0.73	0.79	—	22683	2874	3	0	0	0	0	logfile
✔	5i68	8072	2022-12-21	2016-02-16	3.37	3.45	—	3.5	0.009	1.47	0.0	0.08	10.36	0.01	1.419	26.03	1.25	5.2	94.8	0.0	-0.41	0.73	0.80	3.74	3.5	0.003	0.68	0.0	0.04	15.03	0.00	2.034	11.17	0.36	2.4	97.6	0.0	-0.23	2.06	0.75	0.86	3.50	42016	5296	8	0	16	0	0	logfile
✔	5FWK	3337	2022-12-15	2016-02-17	3.9	3.97	—	3.9	0.016	1.31	0.0	0.07	9.60	0.01	1.173	2.44	0.00	4.0	95.5	0.5	-0.44	0.77	0.77	1.55	3.9	0.003	0.60	0.0	0.04	14.83	0.00	1.814	10.40	0.14	5.3	94.7	0.0	0.06	1.23	0.77	0.77	1.50	26221	1612	6	0	4	0	13109	logfile
✔	5iJ0	8094	2022-12-13	2016-03-01	3.8	4.26	—	4.2	0.004	0.92	0.0	0.04	11.08	0.00	2.090	4.65	0.41	3.9	96.0	0.1	-2.13	0.54	0.75	1.29	4.2	0.003	0.60	0.0	0.04	14.19	0.00	1.827	12.68	0.14	3.5	96.2	0.2	0.62	0.95	0.54	0.80	2.19	13304	856	4	1	2	0	6523	logfile
✔	5iJ9	8095	2022-12-13	2016-03-01	3.7	3.83	—	3.8	0.004	0.93	0.0	0.04	11.20	0.00	2.060	4.42	0.96	5.1	94.7	0.2	-2.08	0.56	0.79	1.81	3.8	0.003	0.59	0.0	0.04	14.51	0.00	1.874	9.90	0.27	4.7	95.1	0.2	0.68	1.61	0.55	0.81	1.86	13309	856	4	1	2	0	6526	logfile
✘	3JCU	6617	2022-12-19	2016-03-10	3.2	3.37	—	3.2	0.012	1.45	0.0	0.07	13.92	0.01	1.210	23.56	0.03	5.0	94.1	1.0	-1.00	0.79	0.84	3.29	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	75994	7648	76	0	322	0	0	logfile
✔	5FYW	3378	2022-12-21	2016-03-10	4.35	4.82	—	4.3	0.010	1.14	2.0	0.07	12.79	0.01	0.245	17.16	0.77	5.4	94.1	0.5	-2.84	0.80	0.75	—	4.3	0.003	0.74	0.0	0.04	14.42	0.00	1.963	18.43	0.00	6.1	93.8	0.2	0.21	2.88	0.83	0.81	—	41710	5176	30	94	11	0	0	logfile
✔	5iRX	8117	2022-12-13	2016-03-14	2.95	3.39	2.91	3.3	0.014	1.44	0.0	0.07	15.36	0.01	1.744	9.65	0.00	10.7	89.2	0.1	-6.45	0.67	0.77	3.80	3.4	0.004	0.69	0.0	0.04	16.93	0.00	2.250	7.69	1.54	8.5	91.5	0.0	-1.10	0.67	0.62	0.82	2.03	13162	1726	12	0	20	0	0	logfile
✔	5iS0	8119	2022-12-12	2016-03-15	3.43	3.36	3.37	3.2	0.015	1.24	0.0	0.06	10.52	0.01	1.283	5.90	0.00	10.1	89.7	0.3	-5.27	0.63	0.73	2.61	3.2	0.003	0.74	0.0	0.04	14.34	0.00	2.146	10.98	0.28	5.6	94.4	0.0	-0.29	1.48	0.63	0.82	2.52	11808	1576	8	0	4	0	0	logfile
✔	5iRZ	8118	2022-12-13	2016-03-15	3.28	3.63	3.24	3.5	0.010	1.31	0.0	0.23	16.22	0.00	2.008	9.02	0.00	7.5	92.5	0.0	-5.78	0.68	0.77	4.48	3.5	0.003	0.61	0.0	0.04	16.32	0.00	2.184	9.10	0.64	6.7	93.3	0.0	0.77	0.68	0.66	0.84	3.08	12504	1576	8	0	24	0	0	logfile
✔	5iT9	8124	2022-12-15	2016-03-16	3.8	3.86	3.80	3.9	0.007	1.31	42.0	0.10	21.51	0.01	0.713	10.43	9.44	11.2	84.3	4.6	-3.05	0.60	0.76	0.99	3.8	0.004	0.79	0.0	0.04	19.84	0.01	1.844	17.68	0.73	11.2	87.4	1.4	-1.82	1.71	0.62	0.78	0.94	80144	4848	43	1972	83	0	0	logfile
✘	5G05	3388	2022-12-19	2016-03-16	3.4	3.84	—	3.5	0.016	1.81	55.0	0.10	18.98	0.01	0.612	56.80	17.76	4.5	93.6	1.8	-0.14	0.85	0.76	1.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	63181	8027	21	0	3	0	0	logfile
✔	5G04	3385	2022-12-13	2016-03-16	3.9	3.86	—	3.8	0.019	1.88	181.0	0.13	19.17	0.01	1.629	17.81	13.63	6.3	91.5	2.2	-2.36	0.78	0.65	0.91	3.8	0.007	0.89	0.0	0.04	18.05	0.00	1.992	17.97	0.45	5.5	93.9	0.6	0.15	1.73	0.83	0.76	0.63	65481	8322	22	0	3	0	0	logfile
✘	5G06	3366	2022-12-18	2016-03-17	4.2	4.89	—	4.7	0.036	3.53	246.0	0.21	17.03	0.03	1.189	3.07	3.01	5.9	92.3	1.9	-2.39	0.66	0.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	26794	3420	11	0	0	0	0	logfile
✔	5iYD	8138	2022-12-22	2016-03-24	3.9	3.83	—	3.9	0.011	1.73	8.0	0.08	17.24	0.01	0.526	22.33	3.28	8.5	87.8	3.8	-2.10	0.70	0.62	1.39	3.8	0.004	0.96	0.0	0.05	19.31	0.01	1.944	21.96	0.65	8.1	91.3	0.6	-1.04	1.16	0.79	0.80	0.95	46709	5407	31	166	13	0	0	logfile
✔	5iYC	8137	2022-12-22	2016-03-24	3.9	3.68	—	3.8	0.012	1.76	7.0	0.08	17.19	0.01	1.160	19.47	3.83	8.2	87.6	4.2	-2.20	0.67	0.59	1.55	3.8	0.005	0.98	0.0	0.05	19.16	0.01	1.946	22.77	0.65	8.3	91.1	0.6	-1.05	1.76	0.76	0.76	0.99	47927	5577	32	160	13	0	0	logfile

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