Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5U07	8477	2023-02-26	2016-11-23	3.8	3.94	—	3.8	0.010	1.35	5.0	0.07	13.38	0.01	1.958	28.98	2.31	4.8	94.0	1.1	-2.19	0.78	0.77	1.62	3.8	0.003	0.75	0.0	0.04	16.33	0.00	2.073	16.52	0.49	3.9	95.9	0.2	0.05	2.60	0.80	0.82	1.57	27681	3310	14	93	0	0	0	logfile
✔	5U0A	8478	2023-02-26	2016-11-23	3.3	3.41	—	3.4	0.012	1.37	1.0	0.08	16.04	0.01	1.667	28.66	5.48	4.6	94.8	0.6	-2.78	0.65	0.74	1.61	3.4	0.003	0.65	0.0	0.04	17.79	0.00	2.102	13.30	0.38	3.4	96.6	0.1	0.14	1.92	0.73	0.85	1.68	28923	3329	14	144	0	0	0	logfile
✔	5WQ9	6677	2023-02-22	2016-11-23	4.22	4.37	—	4.2	0.009	1.22	15.0	0.07	11.97	0.01	1.501	38.54	2.89	4.4	95.4	0.2	-2.32	0.78	0.68	—	4.2	0.003	0.74	0.0	0.05	12.99	0.00	2.095	13.53	0.08	3.4	96.5	0.1	0.06	1.94	0.85	0.83	—	56340	7395	15	0	0	0	0	logfile
✔	5U0P	8479	2023-02-23	2016-11-26	4.4	4.99	—	4.2	0.007	1.18	1.0	0.05	8.61	0.01	1.541	18.54	0.00	8.3	88.2	3.4	-2.22	0.75	0.62	—	4.2	0.004	0.79	0.0	0.04	11.34	0.00	2.156	21.25	0.00	9.3	90.0	0.6	-0.50	1.66	0.82	0.78	—	20268	2557	16	0	372	0	0	logfile
✔	5U1D	8482	2023-02-18	2016-11-28	3.97	4.06	—	4.3	0.007	1.17	0.0	0.05	12.05	0.00	2.452	0.07	0.84	5.7	94.1	0.2	-2.16	0.36	0.48	1.30	4.1	0.004	0.78	0.0	0.04	15.89	0.00	2.058	14.10	0.51	4.7	95.2	0.1	0.93	1.07	0.52	0.75	1.63	7815	1168	3	0	0	0	0	logfile
✔	5U1C	8481	2023-02-18	2016-11-28	3.9	4.05	4.05	4.0	0.008	0.91	0.0	0.05	19.97	0.01	1.964	4.76	0.28	6.3	93.7	0.0	-4.03	0.65	0.70	2.74	4.0	0.003	0.66	0.0	0.04	23.55	0.00	2.006	14.09	0.57	2.6	97.4	0.0	-0.05	1.64	0.70	0.80	0.96	8596	846	12	94	4	0	0	logfile
✔	5WRG	6679	2023-02-22	2016-12-01	4.3	4.45	—	4.3	0.007	1.37	0.0	0.07	12.06	0.01	2.191	9.91	0.53	18.0	81.4	0.7	-5.05	0.66	0.69	—	4.3	0.003	1.08	0.0	0.05	12.10	0.00	2.000	18.84	0.00	16.9	83.0	0.1	-3.25	1.51	0.67	0.75	—	16317	2208	3	0	0	0	0	logfile
✔	5MJS	3522	2023-02-26	2016-12-01	4.6	4.61	—	4.6	0.010	1.17	0.0	0.07	12.53	0.01	2.131	12.67	0.66	10.1	89.9	0.0	-4.35	0.59	0.79	—	4.6	0.003	0.78	0.0	0.05	14.38	0.01	2.084	19.28	0.07	5.6	94.4	0.0	-1.43	3.01	0.59	0.79	—	28114	3569	17	4	4	0	0	logfile
✔	5MKE	3523	2023-02-22	2016-12-04	4.3	4.44	—	4.3	0.009	1.23	8.0	0.07	13.62	0.01	1.806	56.89	0.82	18.5	81.1	0.5	-5.74	0.63	0.63	—	4.4	0.003	0.90	0.0	0.05	14.55	0.00	2.085	23.61	0.06	8.9	91.1	0.0	-3.06	0.93	0.64	0.68	—	16426	1908	11	0	34	0	0	logfile
✔	5MKF	3524	2023-02-22	2016-12-04	4.2	4.33	—	4.3	0.010	1.11	8.0	0.07	12.67	0.01	1.989	33.58	0.52	11.7	87.5	0.8	-5.40	0.68	0.70	—	4.3	0.003	0.74	0.0	0.05	13.83	0.00	2.123	14.82	0.23	6.1	93.7	0.2	-2.04	1.39	0.68	0.76	—	16620	1932	12	0	41	0	0	logfile
✔	5U4J	8506	2023-02-20	2016-12-04	3.7	3.88	3.59	3.9	0.009	1.21	2.0	0.10	17.20	0.02	1.797	2.97	2.82	5.7	93.9	0.4	-2.95	0.42	0.80	2.24	3.8	0.006	0.81	0.0	0.04	16.64	0.01	2.110	17.08	1.41	5.3	94.5	0.2	-1.41	0.66	0.44	0.79	1.64	11360	524	10	339	0	0	0	logfile
✘	5MLV	3527	2023-02-22	2016-12-07	4.5	4.47	—	4.4	0.010	1.21	0.0	0.06	17.43	0.01	2.060	8.31	0.20	9.0	91.0	0.0	-4.85	0.67	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	56928	7218	36	6	24	0	0	logfile
✔	5U6P	8512	2023-02-21	2016-12-08	3.51	3.56	—	3.5	0.007	1.40	0.0	0.07	12.41	0.01	2.399	2.18	0.00	3.2	96.8	0.0	1.31	0.45	0.53	2.72	3.5	0.003	0.58	0.0	0.04	16.16	0.00	2.136	7.85	0.36	2.3	97.7	0.0	2.45	0.66	0.66	0.83	2.45	15640	2016	12	0	80	0	0	logfile
✔	5U6o	8511	2023-02-21	2016-12-08	3.5	3.58	—	3.5	0.008	1.44	0.0	0.08	11.34	0.01	2.380	2.59	0.00	4.6	95.4	0.0	1.02	0.54	0.66	2.98	3.5	0.002	0.61	0.0	0.04	15.08	0.00	2.203	9.26	0.37	1.9	98.1	0.0	2.22	0.66	0.67	0.82	1.80	14480	1928	4	0	0	0	0	logfile
✔	5MMJ	3532	2023-02-22	2016-12-10	3.6	3.88	—	3.6	0.008	1.15	0.0	0.05	16.66	0.01	1.774	10.61	7.28	4.9	94.8	0.3	-3.46	0.92	0.86	1.28	3.6	0.005	0.71	0.0	0.04	16.28	0.01	1.334	19.31	1.26	5.4	94.4	0.1	-0.53	1.60	0.91	0.85	1.05	55315	2806	31	1484	359	0	0	logfile
✔	5U76	8517	2023-02-26	2016-12-11	3.76	4.46	—	4.4	0.007	1.04	0.0	0.06	13.03	0.00	1.410	5.10	0.51	8.4	91.3	0.2	-3.69	0.56	0.58	0.90	4.3	0.004	0.91	0.0	0.05	15.82	0.00	2.145	21.40	0.48	5.9	94.1	0.0	-0.64	2.52	0.64	0.77	1.13	28364	3512	4	0	0	0	0	logfile
✔	5MP9	3534	2023-02-26	2016-12-16	4.1	4.19	—	4.1	0.013	1.32	15.0	0.07	16.20	0.01	1.139	2.81	2.49	5.8	93.2	1.0	-3.88	0.64	0.77	—	4.1	0.003	0.73	0.0	0.04	14.26	0.00	1.941	11.01	0.03	3.2	96.6	0.1	0.26	1.74	0.61	0.84	—	67883	8674	40	0	12	0	0	logfile
✔	5MPA	3535	2023-02-26	2016-12-16	4.5	4.58	—	4.5	0.026	2.51	100.0	0.13	15.51	0.02	1.354	4.49	1.95	7.7	90.6	1.8	-4.17	0.58	0.67	—	4.5	0.004	0.82	0.0	0.05	13.65	0.00	1.910	17.41	0.08	4.2	95.7	0.1	-0.37	2.29	0.58	0.81	—	67883	8674	40	0	12	0	0	logfile
✔	5MPS	3539	2023-02-22	2016-12-18	3.85	4.03	—	3.9	0.008	1.41	13.0	0.11	15.52	0.01	1.479	7.71	2.50	8.5	90.6	0.9	-2.11	0.73	0.82	1.54	3.9	0.003	0.74	0.0	0.04	16.68	0.00	1.889	16.87	0.35	5.4	94.5	0.0	0.17	0.79	0.73	0.80	1.17	58929	6718	36	339	99	0	0	logfile
✔	5UAK	8516	2023-02-19	2016-12-19	3.87	4.12	—	4.2	0.008	1.08	0.0	0.06	13.28	0.00	2.474	0.43	0.00	4.3	95.7	0.0	-3.02	0.42	0.62	1.39	4.1	0.003	0.75	0.0	0.04	16.32	0.00	2.186	12.57	0.60	3.4	96.6	0.0	0.68	1.57	0.53	0.76	1.17	9232	1139	2	0	19	0	0	logfile

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