The table shows a selection of parameters. Activate more columns using
the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5XTD | 6773 | 2023-12-10 | 2017-06-19 | 3.7 | 3.83 | — | 3.7 | 0.012 | 1.58 | 1.0 | 0.07 | 12.91 | 0.01 | 1.049 | 27.86 | 0.83 | 6.5 | 90.6 | 2.9 | -1.69 | 0.75 | 0.72 | 2.51 | 3.7 | 0.003 | 0.80 | 0.0 | 0.04 | 15.93 | 0.01 | 2.030 | 17.52 | 0.45 | 6.2 | 93.2 | 0.6 | -0.30 | 1.40 | 0.78 | 0.78 | 1.48 | 66789 | 8191 | 62 | 0 | 30 | 0 | 0 | logfile |
✔ | 5W81 | 8782 | 2023-12-08 | 2017-06-21 | 3.37 | 3.79 | — | 3.9 | 0.008 | 1.26 | 1.0 | 0.06 | 13.89 | 0.00 | 1.940 | 1.47 | 0.00 | 5.1 | 94.9 | 0.0 | -3.11 | 0.45 | 0.60 | 0.57 | 3.8 | 0.003 | 0.72 | 0.0 | 0.04 | 16.84 | 0.00 | 1.920 | 8.31 | 0.79 | 3.2 | 96.7 | 0.1 | 0.09 | 1.54 | 0.58 | 0.82 | 1.53 | 9393 | 1173 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 5WC0 | 8794 | 2023-12-09 | 2017-06-29 | 4.4 | 4.61 | — | 4.4 | 0.006 | 1.06 | 0.0 | 0.05 | 11.48 | 0.01 | 2.043 | 5.46 | 0.11 | 7.9 | 91.9 | 0.2 | -4.78 | 0.87 | 0.79 | — | 4.4 | 0.002 | 0.59 | 0.0 | 0.04 | 11.76 | 0.00 | 2.155 | 10.13 | 0.00 | 4.5 | 95.5 | 0.0 | 0.45 | 3.06 | 0.87 | 0.81 | — | 11460 | 1660 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 5WC3 | 8795 | 2023-12-10 | 2017-06-29 | 3.5 | 3.53 | — | 3.5 | 0.015 | 1.18 | 0.0 | 0.06 | 9.37 | 0.01 | 1.925 | 12.86 | 0.00 | 8.0 | 90.5 | 1.5 | -5.20 | 0.79 | 0.76 | 2.30 | 3.5 | 0.003 | 0.65 | 0.0 | 0.05 | 11.90 | 0.00 | 2.189 | 6.00 | 0.21 | 9.2 | 89.8 | 1.0 | -1.88 | 1.58 | 0.77 | 0.73 | 1.44 | 65880 | 4170 | 30 | 0 | 0 | 0 | 33390 | logfile |
✔ | 5XWY | 6777 | 2023-12-09 | 2017-06-30 | 3.2 | 3.25 | — | 3.2 | 0.008 | 1.18 | 1.0 | 0.06 | 14.31 | 0.00 | 2.263 | 3.64 | 0.87 | 7.6 | 92.3 | 0.1 | -5.96 | 0.69 | 0.78 | 3.96 | 3.2 | 0.003 | 0.72 | 0.0 | 0.04 | 17.31 | 0.00 | 2.113 | 10.58 | 0.10 | 7.1 | 92.9 | 0.0 | -0.28 | 1.41 | 0.77 | 0.87 | 3.21 | 10493 | 1117 | 2 | 51 | 0 | 0 | 0 | logfile |
✔ | 5XY3 | 6784 | 2023-12-07 | 2017-07-06 | 3.2 | 3.24 | — | 3.2 | 0.006 | 1.04 | 7.0 | 0.09 | 21.80 | 0.00 | 1.123 | 6.22 | 3.45 | 6.0 | 92.7 | 1.3 | -3.33 | 0.61 | 0.76 | 2.54 | 3.2 | 0.004 | 0.65 | 0.0 | 0.04 | 21.44 | 0.00 | 2.007 | 8.09 | 0.43 | 5.4 | 94.3 | 0.4 | -1.15 | 0.60 | 0.77 | 0.85 | 2.16 | 107145 | 5917 | 43 | 2815 | 0 | 0 | 0 | logfile |
✔ | 5XYi | 6788 | 2023-12-10 | 2017-07-08 | 3.35 | 3.41 | — | 3.4 | 0.007 | 1.11 | 5.0 | 0.09 | 22.23 | 0.00 | 1.113 | 14.15 | 5.14 | 8.3 | 89.0 | 2.7 | -3.65 | 0.63 | 0.70 | 1.75 | 3.4 | 0.010 | 0.86 | 0.0 | 0.04 | 21.85 | 0.01 | 2.018 | 11.95 | 1.26 | 8.9 | 90.1 | 1.0 | -1.59 | 1.55 | 0.79 | 0.84 | 1.33 | 65924 | 4368 | 34 | 1490 | 0 | 0 | 0 | logfile |
✔ | 5WFE | 8827 | 2023-12-10 | 2017-07-11 | 3.64 | 4.04 | — | 3.8 | 0.004 | 0.66 | 0.0 | 0.04 | 23.01 | 0.00 | 1.891 | 14.85 | 0.09 | 4.6 | 95.3 | 0.1 | -1.79 | 0.80 | 0.67 | 1.90 | 3.8 | 0.004 | 0.75 | 0.0 | 0.04 | 24.04 | 0.00 | 2.066 | 17.78 | 0.09 | 4.1 | 95.9 | 0.0 | 0.36 | 2.54 | 0.84 | 0.76 | 1.77 | 15523 | 1447 | 12 | 210 | 0 | 0 | 0 | logfile |
✔ | 5oH0 | 3809 | 2023-12-08 | 2017-07-13 | 4.2 | 4.36 | — | 4.3 | 0.003 | 0.75 | 0.0 | 0.05 | 8.94 | 0.00 | 2.295 | 3.32 | 0.00 | 1.9 | 98.1 | 0.0 | -3.74 | 0.64 | 0.84 | — | 4.2 | 0.004 | 0.59 | 0.0 | 0.04 | 10.80 | 0.00 | 2.200 | 6.03 | 0.00 | 4.8 | 95.2 | 0.0 | -2.26 | 0.63 | 0.64 | 0.86 | — | 6588 | 942 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 5WJ9 | 8841 | 2023-12-10 | 2017-07-21 | 3.49 | 4.12 | — | 3.9 | 0.014 | 1.23 | 4.0 | 0.07 | 15.07 | 0.01 | 2.225 | 4.04 | 1.93 | 9.1 | 90.7 | 0.3 | -3.89 | 0.59 | 0.70 | 2.66 | 4.0 | 0.004 | 0.87 | 0.0 | 0.05 | 16.66 | 0.00 | 2.176 | 18.42 | 0.94 | 5.9 | 94.1 | 0.1 | -1.12 | 1.47 | 0.65 | 0.79 | 1.56 | 15540 | 1916 | 8 | 0 | 4 | 0 | 0 | logfile |
✘ | 5oJQ | 3566 | 2023-12-08 | 2017-07-22 | 3.7 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -5.26 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 113346 | 14364 | 54 | 0 | 0 | 0 | 0 | logfile |
✔ | 5Y4o | 6805 | 2023-12-09 | 2017-08-04 | 3.8 | 3.55 | — | 3.6 | 0.022 | 2.44 | 28.0 | 0.12 | 19.88 | 0.02 | 0.471 | 78.50 | 20.31 | 7.8 | 87.8 | 4.5 | -2.08 | 0.55 | 0.62 | 0.20 | 3.6 | 0.003 | 0.77 | 0.0 | 0.04 | 17.56 | 0.00 | 2.042 | 14.00 | 0.45 | 7.0 | 92.5 | 0.5 | -0.18 | 1.75 | 0.59 | 0.72 | 1.52 | 12341 | 1561 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 5ooD | 3837 | 2023-12-10 | 2017-08-07 | 3.7 | 3.73 | 3.79 | 3.7 | 0.050 | 3.12 | 0.0 | 0.22 | 18.58 | 0.02 | 1.995 | 7.57 | 0.00 | 5.5 | 92.0 | 2.5 | -1.71 | 0.63 | 0.81 | 2.02 | 3.7 | 0.003 | 1.57 | 0.0 | 0.04 | 19.43 | 0.00 | 2.008 | 18.29 | 0.38 | 4.9 | 94.9 | 0.2 | 0.35 | 1.43 | 0.62 | 0.82 | 1.86 | 14910 | 1855 | 10 | 0 | 20 | 0 | 0 | logfile |
✔ | 5ooC | 3836 | 2023-12-10 | 2017-08-07 | 3.6 | 3.68 | 3.40 | 3.7 | 0.049 | 3.11 | 0.0 | 0.22 | 17.81 | 0.02 | 2.050 | 8.69 | 0.00 | 4.4 | 92.9 | 2.7 | -1.43 | 0.66 | 0.83 | 2.39 | 3.6 | 0.004 | 1.57 | 0.0 | 0.05 | 19.81 | 0.00 | 2.035 | 15.86 | 0.32 | 4.1 | 95.1 | 0.8 | -0.21 | 1.39 | 0.68 | 0.84 | 1.68 | 14885 | 1855 | 10 | 0 | 15 | 0 | 0 | logfile |
✔ | 5oQJ | 3846 | 2023-12-09 | 2017-08-11 | 4.7 | 4.68 | — | 4.2 | 0.007 | 0.54 | 0.0 | 0.04 | 12.58 | 0.00 | 1.336 | 7.82 | 0.30 | 6.5 | 92.3 | 1.2 | -3.41 | 0.70 | 0.58 | — | 4.3 | 0.003 | 0.70 | 0.0 | 0.04 | 14.50 | 0.00 | 2.013 | 13.98 | 0.02 | 5.3 | 94.5 | 0.2 | -0.20 | 1.79 | 0.84 | 0.81 | — | 62931 | 7649 | 43 | 148 | 557 | 0 | 0 | logfile |
✔ | 6AV9 | 7007 | 2023-12-08 | 2017-09-01 | 3.9 | 3.83 | — | 3.8 | 0.008 | 1.11 | 0.0 | 0.06 | 12.77 | 0.01 | 1.920 | 32.37 | 0.33 | 12.8 | 86.8 | 0.4 | -4.62 | 0.58 | 0.80 | 2.42 | 3.8 | 0.005 | 0.96 | 0.0 | 0.05 | 16.16 | 0.00 | 2.104 | 19.93 | 0.87 | 12.2 | 87.5 | 0.3 | -2.41 | 1.26 | 0.59 | 0.80 | 1.53 | 8673 | 1101 | 6 | 0 | 3 | 0 | 0 | logfile |
✔ | 6AVB | 7008 | 2023-12-08 | 2017-09-01 | 3.9 | 3.83 | — | 3.8 | 0.009 | 1.13 | 3.0 | 0.06 | 11.85 | 0.01 | 2.072 | 27.43 | 0.00 | 12.9 | 86.8 | 0.3 | -5.00 | 0.58 | 0.79 | 2.72 | 3.8 | 0.004 | 0.97 | 0.0 | 0.05 | 15.49 | 0.00 | 2.182 | 18.00 | 0.98 | 11.0 | 89.0 | 0.0 | -2.37 | 1.70 | 0.58 | 0.79 | 1.55 | 8673 | 1101 | 6 | 0 | 3 | 0 | 0 | logfile |
✔ | 6AVE | 7009 | 2023-12-09 | 2017-09-02 | 3.7 | 3.77 | 3.69 | 3.7 | 0.008 | 0.88 | 0.0 | 0.07 | 9.62 | 0.01 | 2.301 | 7.29 | 0.00 | 5.0 | 95.0 | 0.0 | -3.23 | 0.63 | 0.70 | 2.82 | 3.7 | 0.003 | 0.67 | 0.0 | 0.04 | 14.92 | 0.00 | 2.143 | 11.82 | 0.54 | 3.1 | 96.9 | 0.0 | 0.36 | 0.78 | 0.68 | 0.75 | 2.15 | 9657 | 1272 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 6AYG | 7020 | 2023-12-09 | 2017-09-08 | 4.65 | 4.76 | — | 4.6 | 0.013 | 1.56 | 0.0 | 0.07 | 11.75 | 0.01 | 2.180 | 19.94 | 1.09 | 7.7 | 91.9 | 0.5 | -4.34 | 0.84 | 0.80 | — | 4.6 | 0.002 | 0.59 | 0.0 | 0.04 | 10.50 | 0.00 | 2.121 | 3.95 | 0.00 | 2.8 | 97.2 | 0.0 | 2.30 | 0.90 | 0.83 | 0.78 | — | 10456 | 1756 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5oYB | 3860 | 2023-12-09 | 2017-09-08 | 3.75 | 3.87 | 3.90 | 3.8 | 0.007 | 1.18 | 8.0 | 0.10 | 12.85 | 0.01 | 1.771 | 8.87 | 3.12 | 7.6 | 92.4 | 0.0 | -3.98 | 0.65 | 0.84 | 2.44 | 3.8 | 0.003 | 0.75 | 0.0 | 0.04 | 15.47 | 0.00 | 2.160 | 9.67 | 0.47 | 5.3 | 94.7 | 0.0 | 0.72 | 1.73 | 0.66 | 0.82 | 1.61 | 11770 | 1436 | 4 | 0 | 4 | 0 | 0 | logfile |