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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6DNC | 7970 | 2024-03-01 | 2018-06-06 | 3.7 | 6.35 | — | 4.1 | 0.008 | 1.14 | 2.0 | 0.09 | 22.18 | 0.01 | 1.764 | 6.82 | 1.11 | 13.5 | 84.5 | 2.0 | -4.52 | 0.87 | 0.73 | 0.26 | 4.1 | 0.006 | 0.77 | 0.0 | 0.04 | 23.73 | 0.01 | 1.921 | 38.39 | 2.65 | 10.6 | 89.3 | 0.1 | -1.80 | 3.09 | 0.96 | 0.91 | 0.33 | 152438 | 6520 | 59 | 4735 | 0 | 0 | 0 | logfile |
✔ | 5ZEP | 6921 | 2024-03-01 | 2018-02-27 | 3.4 | 5.11 | — | 4.5 | 0.010 | 1.18 | 5.0 | 0.06 | 24.04 | 0.01 | 1.089 | 21.16 | 3.06 | 8.5 | 90.3 | 1.3 | -3.96 | 0.70 | 0.53 | 0.11 | 4.5 | 0.006 | 0.79 | 2.0 | 0.04 | 24.61 | 0.01 | 1.879 | 28.60 | 4.65 | 7.3 | 92.5 | 0.2 | -1.56 | 1.66 | 0.90 | 0.86 | 0.20 | 152451 | 6193 | 58 | 4802 | 262 | 0 | 0 | logfile |
✔ | 7MSC | 23961 | 2024-03-01 | 2021-05-11 | 2.97 | 2.46 | — | 2.9 | 0.009 | 0.88 | 0.0 | 0.05 | 22.15 | 0.01 | 2.009 | 2.25 | 0.12 | 6.9 | 92.9 | 0.2 | -4.68 | 0.85 | 0.87 | 4.04 | 2.9 | 0.009 | 0.75 | 0.0 | 0.04 | 22.31 | 0.01 | 1.767 | 5.50 | 3.63 | 6.7 | 93.1 | 0.2 | -1.54 | 0.40 | 0.85 | 0.88 | 2.99 | 152447 | 6179 | 69 | 4836 | 453 | 0 | 0 | logfile |
✔ | 7MSM | 23969 | 2024-03-01 | 2021-05-11 | 2.79 | 2.41 | — | 2.8 | 0.009 | 0.88 | 0.0 | 0.05 | 22.18 | 0.01 | 2.013 | 2.32 | 0.18 | 6.8 | 93.1 | 0.2 | -4.70 | 0.86 | 0.87 | 4.28 | 2.8 | 0.007 | 0.68 | 0.0 | 0.04 | 22.28 | 0.01 | 1.838 | 6.13 | 2.82 | 6.4 | 93.5 | 0.1 | -1.48 | 0.42 | 0.85 | 0.88 | 3.22 | 152436 | 6179 | 69 | 4836 | 455 | 0 | 0 | logfile |
✔ | 6WH7 | 21668 | 2024-03-01 | 2020-04-07 | 2.78 | 2.79 | — | 2.9 | 0.011 | 0.89 | 0.0 | 0.07 | 9.91 | 0.01 | 1.989 | 20.54 | 0.71 | 3.5 | 96.2 | 0.3 | -1.50 | 0.74 | 0.88 | 5.74 | 2.9 | 0.005 | 0.71 | 0.0 | 0.05 | 15.53 | 0.00 | 2.074 | 13.56 | 3.66 | 6.5 | 93.4 | 0.1 | -1.14 | 0.57 | 0.72 | 0.88 | 4.19 | 151800 | 19020 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LZD | 4124 | 2024-03-01 | 2016-09-29 | 3.4 | 3.48 | 3.51 | 3.4 | 0.009 | 1.23 | 9.0 | 0.08 | 22.46 | 0.02 | 2.023 | 6.14 | 0.71 | 7.6 | 91.0 | 1.4 | -3.90 | 0.75 | 0.86 | 2.27 | 3.4 | 0.004 | 0.75 | 1.0 | 0.04 | 22.60 | 0.01 | 1.778 | 13.88 | 8.03 | 8.0 | 91.7 | 0.3 | -1.77 | 0.51 | 0.75 | 0.86 | 1.67 | 153177 | 6439 | 68 | 4785 | 152 | 2 | 0 | logfile |
✔ | 6WD4 | 21623 | 2024-03-01 | 2020-03-31 | 3.7 | 4.02 | 4.02 | 3.9 | 0.006 | 0.94 | 0.0 | 0.08 | 22.02 | 0.01 | 1.313 | 10.87 | 0.48 | 11.3 | 87.0 | 1.7 | -4.79 | 0.83 | 0.83 | 0.81 | 3.8 | 0.005 | 0.75 | 0.0 | 0.04 | 23.32 | 0.01 | 2.016 | 24.13 | 6.56 | 11.6 | 88.3 | 0.2 | -2.51 | 0.65 | 0.84 | 0.84 | 0.75 | 153083 | 6391 | 62 | 4811 | 0 | 0 | 0 | logfile |
✔ | 6WD5 | 21624 | 2024-03-01 | 2020-03-31 | 3.6 | 3.95 | 3.98 | 3.8 | 0.006 | 0.94 | 0.0 | 0.08 | 22.09 | 0.01 | 1.312 | 11.60 | 0.77 | 11.6 | 86.5 | 2.0 | -4.87 | 0.83 | 0.83 | 1.21 | 3.8 | 0.004 | 0.70 | 0.0 | 0.04 | 23.38 | 0.00 | 2.034 | 21.44 | 6.80 | 10.9 | 89.0 | 0.2 | -2.50 | 0.66 | 0.84 | 0.84 | 0.86 | 153135 | 6400 | 62 | 4811 | 0 | 0 | 0 | logfile |
✔ | 6WD2 | 21621 | 2024-03-01 | 2020-03-31 | 3.6 | 3.97 | 4.00 | 3.8 | 0.006 | 0.94 | 0.0 | 0.08 | 22.08 | 0.01 | 1.315 | 11.11 | 0.44 | 10.6 | 87.8 | 1.6 | -4.77 | 0.83 | 0.83 | 0.92 | 3.8 | 0.006 | 0.79 | 0.0 | 0.04 | 23.39 | 0.01 | 2.008 | 25.33 | 7.30 | 11.4 | 88.4 | 0.1 | -2.46 | 1.49 | 0.84 | 0.84 | 0.74 | 153282 | 6417 | 62 | 4810 | 1 | 0 | 0 | logfile |
✔ | 6WD6 | 21625 | 2024-03-01 | 2020-03-31 | 3.7 | 4.07 | 4.15 | 3.9 | 0.006 | 0.94 | 0.0 | 0.08 | 22.03 | 0.01 | 1.316 | 11.51 | 0.71 | 11.1 | 87.3 | 1.6 | -4.98 | 0.83 | 0.82 | 0.92 | 3.9 | 0.005 | 0.74 | 0.0 | 0.04 | 23.46 | 0.01 | 2.049 | 24.55 | 6.10 | 10.4 | 89.4 | 0.2 | -2.60 | 1.49 | 0.84 | 0.83 | 0.78 | 153103 | 6396 | 62 | 4811 | 0 | 0 | 0 | logfile |
✔ | 5U9F | 8521 | 2024-03-01 | 2016-12-16 | 3.2 | 4.48 | — | 3.3 | 0.006 | 0.95 | 0.0 | 0.08 | 22.02 | 0.01 | 2.301 | 12.61 | 1.02 | 10.8 | 88.2 | 1.0 | -5.04 | 0.87 | 0.78 | 1.55 | 3.4 | 0.006 | 0.75 | 1.0 | 0.04 | 23.26 | 0.01 | 1.802 | 25.76 | 4.19 | 11.0 | 88.9 | 0.1 | -2.22 | 1.46 | 0.94 | 0.90 | 1.09 | 152819 | 6576 | 72 | 4729 | 361 | 0 | 0 | logfile |
✔ | 5iMQ | 6584 | 2024-03-01 | 2016-03-06 | 3.8 | 3.95 | — | 3.9 | 0.012 | 1.41 | 0.0 | 0.07 | 26.36 | 0.01 | 1.006 | 63.05 | 4.55 | 16.6 | 72.8 | 10.6 | -4.61 | 0.71 | 0.65 | 0.92 | 3.9 | 0.006 | 0.92 | 2.0 | 0.05 | 25.31 | 0.01 | 1.725 | 25.39 | 7.38 | 18.5 | 79.1 | 2.4 | -3.66 | 0.78 | 0.82 | 0.80 | 0.46 | 153046 | 6640 | 56 | 4680 | 1 | 0 | 0 | logfile |
✔ | 5U9G | 8522 | 2024-03-01 | 2016-12-16 | 3.2 | 4.54 | — | 3.3 | 0.006 | 0.92 | 0.0 | 0.08 | 21.99 | 0.01 | 2.111 | 12.37 | 0.93 | 10.6 | 88.5 | 1.0 | -5.08 | 0.89 | 0.79 | 1.20 | 3.4 | 0.005 | 0.69 | 0.0 | 0.03 | 23.04 | 0.00 | 1.809 | 21.51 | 3.09 | 9.4 | 90.4 | 0.2 | -1.67 | 1.89 | 0.95 | 0.91 | 1.11 | 152649 | 6561 | 70 | 4729 | 349 | 0 | 0 | logfile |
✔ | 5LZC | 4123 | 2024-03-01 | 2016-09-29 | 4.8 | 5.11 | 5.25 | 4.8 | 0.009 | 1.21 | 10.0 | 0.08 | 22.13 | 0.02 | 1.994 | 5.27 | 0.11 | 5.7 | 92.4 | 1.8 | -1.87 | 0.82 | 0.82 | — | 4.8 | 0.004 | 0.74 | 0.0 | 0.04 | 23.06 | 0.01 | 1.922 | 29.21 | 0.02 | 8.3 | 91.4 | 0.3 | -2.11 | 1.86 | 0.83 | 0.83 | — | 152981 | 6432 | 64 | 4785 | 5 | 2 | 0 | logfile |
✔ | 6WD3 | 21622 | 2024-03-01 | 2020-03-31 | 3.6 | 3.96 | 3.97 | 3.8 | 0.006 | 0.95 | 0.0 | 0.08 | 22.07 | 0.01 | 1.315 | 11.55 | 0.96 | 12.0 | 86.3 | 1.8 | -4.89 | 0.83 | 0.83 | 1.34 | 3.8 | 0.006 | 0.79 | 0.0 | 0.04 | 23.42 | 0.01 | 1.999 | 26.14 | 7.31 | 11.4 | 88.5 | 0.2 | -2.55 | 1.49 | 0.84 | 0.84 | 0.96 | 153211 | 6408 | 62 | 4811 | 0 | 0 | 0 | logfile |
✔ | 6WDA | 21629 | 2024-03-01 | 2020-03-31 | 3.8 | 4.14 | 4.11 | 3.9 | 0.006 | 0.93 | 0.0 | 0.08 | 22.01 | 0.01 | 1.314 | 10.79 | 0.69 | 10.6 | 87.8 | 1.6 | -4.79 | 0.84 | 0.82 | 0.86 | 3.9 | 0.005 | 0.74 | 0.0 | 0.04 | 23.49 | 0.01 | 2.007 | 25.67 | 6.64 | 10.7 | 89.2 | 0.1 | -2.40 | 0.71 | 0.86 | 0.83 | 0.58 | 152933 | 6373 | 62 | 4811 | 0 | 0 | 0 | logfile |
✔ | 6WD9 | 21628 | 2024-03-01 | 2020-03-31 | 3.7 | 4.05 | 4.07 | 3.9 | 0.006 | 0.94 | 0.0 | 0.08 | 22.07 | 0.01 | 1.313 | 11.26 | 0.54 | 10.7 | 87.6 | 1.7 | -4.88 | 0.83 | 0.82 | 1.03 | 3.9 | 0.006 | 0.78 | 0.0 | 0.04 | 23.53 | 0.01 | 1.976 | 26.89 | 6.96 | 11.6 | 88.2 | 0.2 | -2.51 | 0.70 | 0.85 | 0.83 | 0.69 | 152927 | 6371 | 62 | 4811 | 0 | 0 | 0 | logfile |
✔ | 6WD8 | 21627 | 2024-03-01 | 2020-03-31 | 3.7 | 4.07 | 4.18 | 3.9 | 0.006 | 0.96 | 0.0 | 0.08 | 22.11 | 0.01 | 1.315 | 12.60 | 0.80 | 11.4 | 86.9 | 1.7 | -4.88 | 0.83 | 0.81 | 1.18 | 3.9 | 0.006 | 0.82 | 0.0 | 0.04 | 23.68 | 0.01 | 2.029 | 30.42 | 7.27 | 12.1 | 87.8 | 0.1 | -2.70 | 1.51 | 0.85 | 0.83 | 0.82 | 153212 | 6409 | 62 | 4810 | 1 | 0 | 0 | logfile |
✔ | 7K55 | 22674 | 2024-03-01 | 2020-09-16 | 3.3 | 3.80 | — | 3.2 | 0.012 | 1.26 | 0.0 | 0.10 | 22.66 | 0.01 | 1.421 | 24.43 | 2.17 | 15.7 | 82.6 | 1.6 | -4.14 | 0.84 | 0.81 | 1.29 | 3.1 | 0.005 | 0.74 | 0.0 | 0.04 | 23.35 | 0.01 | 1.836 | 20.41 | 5.93 | 13.5 | 86.2 | 0.2 | -2.73 | 1.18 | 0.85 | 0.83 | 1.02 | 153368 | 6631 | 62 | 4732 | 2 | 0 | 0 | logfile |
✔ | 7K54 | 22673 | 2024-03-01 | 2020-09-16 | 3.2 | 3.75 | — | 3.1 | 0.011 | 1.17 | 0.0 | 0.09 | 22.57 | 0.01 | 1.400 | 21.96 | 1.81 | 14.1 | 84.3 | 1.6 | -3.93 | 0.86 | 0.83 | 1.65 | 3.1 | 0.007 | 0.78 | 1.0 | 0.04 | 23.35 | 0.01 | 1.963 | 20.48 | 5.84 | 13.2 | 86.7 | 0.1 | -2.36 | 3.22 | 0.87 | 0.86 | 1.44 | 153368 | 6631 | 62 | 4732 | 2 | 0 | 0 | logfile |