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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6oYA | 20223 | 2022-05-12 | 2019-05-14 | 3.3 | 3.88 | — | 3.7 | 0.004 | 0.88 | 0.0 | 0.05 | 15.28 | 0.01 | 2.329 | 5.76 | 0.11 | 6.9 | 93.1 | 0.0 | -4.69 | 0.64 | 0.79 | 2.13 | 3.7 | 0.003 | 0.73 | 0.0 | 0.04 | 16.63 | 0.00 | 2.047 | 13.57 | 0.66 | 5.6 | 94.4 | 0.0 | -1.44 | 1.20 | 0.63 | 0.79 | 1.37 | 8321 | 1056 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 6GC7 | 4382 | 2022-05-12 | 2018-04-17 | 4.3 | 4.85 | — | 4.4 | 0.003 | 0.67 | 0.0 | 0.03 | 13.13 | 0.00 | 2.251 | 5.14 | 0.28 | 5.9 | 93.9 | 0.1 | -4.27 | 0.76 | 0.61 | — | 4.4 | 0.003 | 0.60 | 0.0 | 0.03 | 15.02 | 0.00 | 1.979 | 22.87 | 0.07 | 8.8 | 91.1 | 0.1 | -1.90 | 1.64 | 0.91 | 0.86 | — | 54410 | 1738 | 17 | 1901 | 0 | 0 | 0 | logfile |
✔ | 6MRT | 9212 | 2022-05-12 | 2018-10-15 | 2.8 | 2.93 | — | 2.9 | 0.008 | 0.90 | 0.0 | 0.05 | 10.67 | 0.01 | 2.260 | 1.61 | 0.82 | 1.1 | 98.9 | 0.0 | -1.27 | 0.70 | 0.84 | 3.77 | 2.9 | 0.003 | 0.46 | 0.0 | 0.03 | 15.43 | 0.00 | 2.226 | 3.14 | 1.29 | 0.5 | 99.5 | 0.0 | 5.71 | 3.08 | 0.73 | 0.87 | 2.07 | 26868 | 3420 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LMN | 4073 | 2022-05-12 | 2016-08-01 | 3.55 | 3.68 | 3.61 | 3.6 | 0.007 | 1.42 | 35.0 | 0.12 | 20.67 | 0.01 | 0.925 | 19.89 | 21.59 | 10.4 | 86.7 | 2.8 | -2.30 | 0.79 | 0.88 | 1.35 | 3.6 | 0.005 | 0.74 | 0.0 | 0.04 | 17.21 | 0.01 | 1.832 | 20.76 | 0.96 | 8.0 | 91.7 | 0.3 | -1.18 | 1.56 | 0.77 | 0.84 | 1.40 | 54149 | 2623 | 27 | 1534 | 129 | 0 | 0 | logfile |
✔ | 6RZB | 10061 | 2022-05-12 | 2019-06-13 | 4.1 | 4.19 | 3.09 | 4.2 | 0.009 | 1.85 | 5.0 | 0.11 | 17.62 | 0.01 | 2.096 | 9.49 | 5.37 | 4.2 | 95.5 | 0.3 | -2.81 | 0.68 | 0.84 | — | 4.1 | 0.004 | 0.75 | 0.0 | 0.04 | 14.83 | 0.00 | 1.882 | 18.54 | 0.00 | 4.0 | 96.0 | 0.0 | -0.38 | 1.03 | 0.69 | 0.83 | — | 8001 | 1001 | 5 | 1 | 3 | 0 | 0 | logfile |
✔ | 6CoZ | 7545 | 2022-05-12 | 2018-03-13 | 3.36 | 4.78 | — | 4.7 | 0.009 | 1.71 | 0.0 | 0.07 | 5.63 | 0.01 | 2.541 | 0.00 | 0.00 | 3.2 | 96.2 | 0.6 | -2.49 | 0.78 | 0.68 | — | 4.4 | 0.003 | 0.82 | 0.0 | 0.04 | 4.96 | 0.00 | 2.368 | 4.42 | 0.00 | 8.3 | 91.7 | 0.0 | -1.63 | 1.58 | 0.82 | 0.76 | — | 1586 | 320 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NUR | 0520 | 2022-05-12 | 2019-02-01 | 3.1 | 3.25 | 3.17 | 3.3 | 0.016 | 1.55 | 0.0 | 0.09 | 10.59 | 0.01 | 2.270 | 2.57 | 0.52 | 1.4 | 98.6 | 0.0 | -0.12 | 0.64 | 0.81 | 4.19 | 3.3 | 0.003 | 0.58 | 0.0 | 0.04 | 14.53 | 0.00 | 2.177 | 7.01 | 0.31 | 2.4 | 97.6 | 0.0 | 0.53 | 0.72 | 0.58 | 0.83 | 3.10 | 8647 | 1087 | 5 | 0 | 2 | 0 | 0 | logfile |
✔ | 6BGJ | 7096 | 2022-05-12 | 2017-10-28 | 3.8 | 3.68 | 3.27 | 3.6 | 0.008 | 1.21 | 0.0 | 0.06 | 10.72 | 0.01 | 2.142 | 10.69 | 0.00 | 13.7 | 85.7 | 0.6 | -5.82 | 0.47 | 0.59 | 1.68 | 3.6 | 0.005 | 0.92 | 0.0 | 0.05 | 14.36 | 0.01 | 2.037 | 19.66 | 0.14 | 13.7 | 85.9 | 0.4 | -1.54 | 1.39 | 0.50 | 0.61 | 1.43 | 7418 | 980 | 4 | 0 | 2 | 0 | 0 | logfile |
✘ | 5MM2 | 3528 | 2022-05-12 | 2016-12-08 | 2.7 | 12.53 | 1.51 | — | 0.011 | 1.29 | 0.0 | 0.07 | 10.78 | 0.01 | 1.325 | 19.80 | 0.54 | 12.1 | 87.0 | 0.8 | -3.96 | -0.08 | -0.03 | 0.63 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 6605 | 854 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TJX | 10514 | 2022-05-12 | 2019-11-27 | 3.0 | 3.21 | 2.52 | 3.4 | 0.011 | 1.10 | 0.0 | 0.07 | 9.93 | 0.01 | 2.312 | 4.11 | 0.00 | 4.8 | 95.2 | 0.0 | -3.93 | 0.43 | 0.79 | 4.74 | 3.3 | 0.005 | 0.78 | 0.0 | 0.06 | 14.56 | 0.00 | 2.398 | 7.11 | 3.90 | 6.7 | 93.3 | 0.0 | -3.36 | 2.48 | 0.39 | 0.81 | 3.89 | 4878 | 642 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6KZo | 0791 | 2022-05-12 | 2019-09-25 | 3.3 | 3.57 | — | 3.5 | 0.014 | 1.41 | 3.0 | 0.10 | 15.51 | 0.01 | 2.196 | 36.78 | 9.01 | 3.3 | 96.0 | 0.7 | -1.32 | 0.60 | 0.82 | 2.55 | 3.5 | 0.013 | 1.28 | 1.0 | 0.04 | 16.65 | 0.01 | 2.110 | 7.84 | 1.17 | 3.7 | 96.2 | 0.1 | 0.35 | 1.33 | 0.61 | 0.84 | 2.18 | 8238 | 967 | 1 | 0 | 22 | 0 | 0 | logfile |
✔ | 5LMo | 4074 | 2022-05-12 | 2016-08-01 | 4.3 | 4.71 | 4.30 | 4.3 | 0.009 | 1.47 | 50.0 | 0.12 | 20.86 | 0.01 | 0.865 | 18.52 | 20.40 | 10.6 | 85.8 | 3.6 | -2.76 | 0.80 | 0.69 | — | 4.3 | 0.005 | 0.76 | 0.0 | 0.04 | 16.86 | 0.01 | 1.006 | 33.78 | 0.00 | 8.7 | 90.8 | 0.5 | -1.87 | 2.17 | 0.87 | 0.84 | — | 54110 | 2622 | 29 | 1533 | 110 | 0 | 0 | logfile |
✔ | 6DDE | 7868 | 2022-05-12 | 2018-05-10 | 3.5 | 4.11 | — | 4.1 | 0.006 | 1.03 | 1.0 | 0.06 | 10.87 | 0.01 | 2.242 | 7.21 | 0.46 | 6.9 | 93.0 | 0.1 | -3.56 | 0.72 | 0.74 | 2.43 | 4.0 | 0.004 | 0.80 | 1.0 | 0.04 | 15.32 | 0.01 | 2.203 | 16.46 | 0.58 | 4.6 | 95.4 | 0.0 | -1.12 | 1.37 | 0.70 | 0.74 | 1.61 | 8489 | 1122 | 6 | 0 | 2 | 0 | 0 | logfile |
✔ | 5LMU | 4080 | 2022-05-12 | 2016-08-01 | 4.0 | 4.12 | 4.00 | 4.0 | 0.008 | 1.44 | 43.0 | 0.12 | 21.32 | 0.01 | 1.289 | 21.21 | 25.30 | 12.0 | 84.2 | 3.8 | -2.57 | 0.73 | 0.78 | — | 4.0 | 0.007 | 0.89 | 1.0 | 0.04 | 17.75 | 0.01 | 1.835 | 25.89 | 0.75 | 7.2 | 92.2 | 0.6 | -1.52 | 1.58 | 0.75 | 0.83 | — | 55195 | 2550 | 29 | 1612 | 82 | 0 | 0 | logfile |
✔ | 5LMT | 4079 | 2022-05-12 | 2016-08-01 | 4.15 | 4.33 | 4.20 | 4.2 | 0.008 | 1.43 | 21.0 | 0.12 | 20.74 | 0.01 | 1.290 | 18.82 | 22.35 | 11.9 | 84.8 | 3.3 | -2.73 | 0.77 | 0.76 | — | 4.1 | 0.006 | 0.83 | 0.0 | 0.04 | 16.63 | 0.01 | 1.812 | 30.98 | 0.05 | 9.5 | 90.0 | 0.5 | -1.66 | 0.90 | 0.80 | 0.83 | — | 55776 | 2622 | 31 | 1612 | 88 | 0 | 0 | logfile |
✔ | 5LMR | 4077 | 2022-05-12 | 2016-08-01 | 4.45 | 4.71 | 4.60 | 4.4 | 0.008 | 1.39 | 20.0 | 0.12 | 20.50 | 0.01 | 1.426 | 17.95 | 16.73 | 8.7 | 88.5 | 2.8 | -2.16 | 0.79 | 0.74 | — | 4.4 | 0.004 | 0.73 | 0.0 | 0.04 | 16.54 | 0.01 | 1.994 | 29.74 | 0.05 | 8.0 | 91.6 | 0.5 | -1.57 | 1.61 | 0.84 | 0.85 | — | 55662 | 2628 | 29 | 1609 | 4 | 0 | 0 | logfile |
✔ | 6oY9 | 20222 | 2022-05-12 | 2019-05-14 | 3.9 | 4.43 | — | 4.4 | 0.009 | 1.10 | 0.0 | 0.06 | 15.30 | 0.01 | 2.269 | 7.17 | 0.24 | 10.7 | 89.3 | 0.0 | -4.69 | 0.65 | 0.84 | 2.15 | 4.4 | 0.004 | 0.83 | 0.0 | 0.04 | 16.95 | 0.01 | 2.097 | 13.34 | 0.37 | 6.4 | 93.6 | 0.0 | -1.51 | 1.05 | 0.64 | 0.82 | 1.38 | 7519 | 948 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 6DZW | 8941 | 2022-05-12 | 2018-07-05 | 4.3 | 4.31 | 5.22 | 4.9 | 0.003 | 0.84 | 0.0 | 0.09 | 13.51 | 0.01 | 2.052 | 3.87 | 0.36 | 3.2 | 96.8 | 0.0 | -4.99 | 0.45 | 0.53 | — | 4.9 | 0.003 | 0.78 | 0.0 | 0.04 | 13.38 | 0.00 | 2.196 | 16.50 | 0.12 | 4.3 | 95.7 | 0.0 | -1.37 | 1.82 | 0.48 | 0.60 | — | 7829 | 988 | 5 | 0 | 4 | 0 | 0 | logfile |
✔ | 6HRF | 0260 | 2022-05-12 | 2018-09-26 | 3.3 | 3.38 | 2.95 | 3.5 | 0.016 | 1.25 | 0.0 | 0.09 | 13.68 | 0.01 | 2.627 | 8.66 | 0.00 | 13.3 | 86.7 | 0.0 | -4.08 | 0.38 | 0.74 | 2.93 | 3.5 | 0.005 | 0.84 | 0.0 | 0.05 | 16.58 | 0.00 | 2.181 | 9.08 | 0.25 | 6.7 | 93.3 | 0.0 | -3.41 | 3.72 | 0.37 | 0.78 | 3.35 | 3522 | 462 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6DDF | 7869 | 2022-05-12 | 2018-05-10 | 3.5 | 4.16 | 3.83 | 4.1 | 0.006 | 1.01 | 1.0 | 0.06 | 10.48 | 0.01 | 2.228 | 7.92 | 0.72 | 8.3 | 91.5 | 0.1 | -4.62 | 0.72 | 0.72 | 2.22 | 4.1 | 0.004 | 0.77 | 1.0 | 0.04 | 15.80 | 0.01 | 2.179 | 15.77 | 0.43 | 5.1 | 94.9 | 0.0 | -1.41 | 1.33 | 0.65 | 0.71 | 1.02 | 6808 | 890 | 5 | 0 | 2 | 0 | 0 | logfile |