Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6oYA	20223	2022-05-12	2019-05-14	3.3	3.88	—	3.7	0.004	0.88	0.0	0.05	15.28	0.01	2.329	5.76	0.11	6.9	93.1	0.0	-4.69	0.64	0.79	2.13	3.7	0.003	0.73	0.0	0.04	16.63	0.00	2.047	13.57	0.66	5.6	94.4	0.0	-1.44	1.20	0.63	0.79	1.37	8321	1056	5	0	1	0	0	logfile
✔	6GC7	4382	2022-05-12	2018-04-17	4.3	4.85	—	4.4	0.003	0.67	0.0	0.03	13.13	0.00	2.251	5.14	0.28	5.9	93.9	0.1	-4.27	0.76	0.61	—	4.4	0.003	0.60	0.0	0.03	15.02	0.00	1.979	22.87	0.07	8.8	91.1	0.1	-1.90	1.64	0.91	0.86	—	54410	1738	17	1901	0	0	0	logfile
✔	6MRT	9212	2022-05-12	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.46	0.0	0.03	15.43	0.00	2.226	3.14	1.29	0.5	99.5	0.0	5.71	3.08	0.73	0.87	2.07	26868	3420	12	0	0	0	0	logfile
✔	5LMN	4073	2022-05-12	2016-08-01	3.55	3.68	3.61	3.6	0.007	1.42	35.0	0.12	20.67	0.01	0.925	19.89	21.59	10.4	86.7	2.8	-2.30	0.79	0.88	1.35	3.6	0.005	0.74	0.0	0.04	17.21	0.01	1.832	20.76	0.96	8.0	91.7	0.3	-1.18	1.56	0.77	0.84	1.40	54149	2623	27	1534	129	0	0	logfile
✔	6RZB	10061	2022-05-12	2019-06-13	4.1	4.19	3.09	4.2	0.009	1.85	5.0	0.11	17.62	0.01	2.096	9.49	5.37	4.2	95.5	0.3	-2.81	0.68	0.84	—	4.1	0.004	0.75	0.0	0.04	14.83	0.00	1.882	18.54	0.00	4.0	96.0	0.0	-0.38	1.03	0.69	0.83	—	8001	1001	5	1	3	0	0	logfile
✔	6CoZ	7545	2022-05-12	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.003	0.82	0.0	0.04	4.96	0.00	2.368	4.42	0.00	8.3	91.7	0.0	-1.63	1.58	0.82	0.76	—	1586	320	2	0	0	0	0	logfile
✔	6NUR	0520	2022-05-12	2019-02-01	3.1	3.25	3.17	3.3	0.016	1.55	0.0	0.09	10.59	0.01	2.270	2.57	0.52	1.4	98.6	0.0	-0.12	0.64	0.81	4.19	3.3	0.003	0.58	0.0	0.04	14.53	0.00	2.177	7.01	0.31	2.4	97.6	0.0	0.53	0.72	0.58	0.83	3.10	8647	1087	5	0	2	0	0	logfile
✔	6BGJ	7096	2022-05-12	2017-10-28	3.8	3.68	3.27	3.6	0.008	1.21	0.0	0.06	10.72	0.01	2.142	10.69	0.00	13.7	85.7	0.6	-5.82	0.47	0.59	1.68	3.6	0.005	0.92	0.0	0.05	14.36	0.01	2.037	19.66	0.14	13.7	85.9	0.4	-1.54	1.39	0.50	0.61	1.43	7418	980	4	0	2	0	0	logfile
✘	5MM2	3528	2022-05-12	2016-12-08	2.7	12.53	1.51	—	0.011	1.29	0.0	0.07	10.78	0.01	1.325	19.80	0.54	12.1	87.0	0.8	-3.96	-0.08	-0.03	0.63	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6605	854	3	0	0	0	0	logfile
✔	6TJX	10514	2022-05-12	2019-11-27	3.0	3.21	2.52	3.4	0.011	1.10	0.0	0.07	9.93	0.01	2.312	4.11	0.00	4.8	95.2	0.0	-3.93	0.43	0.79	4.74	3.3	0.005	0.78	0.0	0.06	14.56	0.00	2.398	7.11	3.90	6.7	93.3	0.0	-3.36	2.48	0.39	0.81	3.89	4878	642	6	0	0	0	0	logfile
✔	6KZo	0791	2022-05-12	2019-09-25	3.3	3.57	—	3.5	0.014	1.41	3.0	0.10	15.51	0.01	2.196	36.78	9.01	3.3	96.0	0.7	-1.32	0.60	0.82	2.55	3.5	0.013	1.28	1.0	0.04	16.65	0.01	2.110	7.84	1.17	3.7	96.2	0.1	0.35	1.33	0.61	0.84	2.18	8238	967	1	0	22	0	0	logfile
✔	5LMo	4074	2022-05-12	2016-08-01	4.3	4.71	4.30	4.3	0.009	1.47	50.0	0.12	20.86	0.01	0.865	18.52	20.40	10.6	85.8	3.6	-2.76	0.80	0.69	—	4.3	0.005	0.76	0.0	0.04	16.86	0.01	1.006	33.78	0.00	8.7	90.8	0.5	-1.87	2.17	0.87	0.84	—	54110	2622	29	1533	110	0	0	logfile
✔	6DDE	7868	2022-05-12	2018-05-10	3.5	4.11	—	4.1	0.006	1.03	1.0	0.06	10.87	0.01	2.242	7.21	0.46	6.9	93.0	0.1	-3.56	0.72	0.74	2.43	4.0	0.004	0.80	1.0	0.04	15.32	0.01	2.203	16.46	0.58	4.6	95.4	0.0	-1.12	1.37	0.70	0.74	1.61	8489	1122	6	0	2	0	0	logfile
✔	5LMU	4080	2022-05-12	2016-08-01	4.0	4.12	4.00	4.0	0.008	1.44	43.0	0.12	21.32	0.01	1.289	21.21	25.30	12.0	84.2	3.8	-2.57	0.73	0.78	—	4.0	0.007	0.89	1.0	0.04	17.75	0.01	1.835	25.89	0.75	7.2	92.2	0.6	-1.52	1.58	0.75	0.83	—	55195	2550	29	1612	82	0	0	logfile
✔	5LMT	4079	2022-05-12	2016-08-01	4.15	4.33	4.20	4.2	0.008	1.43	21.0	0.12	20.74	0.01	1.290	18.82	22.35	11.9	84.8	3.3	-2.73	0.77	0.76	—	4.1	0.006	0.83	0.0	0.04	16.63	0.01	1.812	30.98	0.05	9.5	90.0	0.5	-1.66	0.90	0.80	0.83	—	55776	2622	31	1612	88	0	0	logfile
✔	5LMR	4077	2022-05-12	2016-08-01	4.45	4.71	4.60	4.4	0.008	1.39	20.0	0.12	20.50	0.01	1.426	17.95	16.73	8.7	88.5	2.8	-2.16	0.79	0.74	—	4.4	0.004	0.73	0.0	0.04	16.54	0.01	1.994	29.74	0.05	8.0	91.6	0.5	-1.57	1.61	0.84	0.85	—	55662	2628	29	1609	4	0	0	logfile
✔	6oY9	20222	2022-05-12	2019-05-14	3.9	4.43	—	4.4	0.009	1.10	0.0	0.06	15.30	0.01	2.269	7.17	0.24	10.7	89.3	0.0	-4.69	0.65	0.84	2.15	4.4	0.004	0.83	0.0	0.04	16.95	0.01	2.097	13.34	0.37	6.4	93.6	0.0	-1.51	1.05	0.64	0.82	1.38	7519	948	4	0	1	0	0	logfile
✔	6DZW	8941	2022-05-12	2018-07-05	4.3	4.31	5.22	4.9	0.003	0.84	0.0	0.09	13.51	0.01	2.052	3.87	0.36	3.2	96.8	0.0	-4.99	0.45	0.53	—	4.9	0.003	0.78	0.0	0.04	13.38	0.00	2.196	16.50	0.12	4.3	95.7	0.0	-1.37	1.82	0.48	0.60	—	7829	988	5	0	4	0	0	logfile
✔	6HRF	0260	2022-05-12	2018-09-26	3.3	3.38	2.95	3.5	0.016	1.25	0.0	0.09	13.68	0.01	2.627	8.66	0.00	13.3	86.7	0.0	-4.08	0.38	0.74	2.93	3.5	0.005	0.84	0.0	0.05	16.58	0.00	2.181	9.08	0.25	6.7	93.3	0.0	-3.41	3.72	0.37	0.78	3.35	3522	462	6	0	0	0	0	logfile
✔	6DDF	7869	2022-05-12	2018-05-10	3.5	4.16	3.83	4.1	0.006	1.01	1.0	0.06	10.48	0.01	2.228	7.92	0.72	8.3	91.5	0.1	-4.62	0.72	0.72	2.22	4.1	0.004	0.77	1.0	0.04	15.80	0.01	2.179	15.77	0.43	5.1	94.9	0.0	-1.41	1.33	0.65	0.71	1.02	6808	890	5	0	2	0	0	logfile

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