Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6YS8	10893	2021-12-01	2020-04-21	3.9	4.00	3.55	3.9	0.006	1.03	1.0	0.08	15.75	0.02	1.522	10.61	1.70	6.4	91.4	2.2	-3.81	0.65	0.83	1.77	3.9	0.005	0.93	0.0	0.05	17.11	0.00	2.095	16.40	0.85	4.7	94.2	1.1	0.64	0.71	0.66	0.82	0.63	5624	737	7	0	0	0	0	logfile
✔	7L1F	23109	2021-12-01	2020-12-14	3.89	2.82	—	2.2	0.008	1.36	3.0	0.08	13.38	0.01	2.323	3.10	0.00	6.6	93.4	0.0	-4.38	0.72	0.70	2.25	2.4	0.010	1.30	0.0	0.05	15.85	0.01	2.043	15.49	0.90	8.3	91.7	0.0	-1.80	1.22	0.74	0.71	1.82	8825	1009	5	31	4	0	0	logfile
✔	7CZB	30508	2021-12-01	2020-09-07	3.8	4.14	—	4.1	0.005	1.12	0.0	0.06	15.72	0.01	2.360	4.78	0.47	12.5	87.5	0.0	-4.95	0.56	0.80	2.30	4.1	0.003	0.91	0.0	0.05	17.03	0.00	2.245	10.91	0.94	10.8	89.2	0.0	-1.60	1.39	0.57	0.79	1.78	6304	776	4	0	0	0	0	logfile
✔	7JZ3	22529	2021-12-01	2020-09-01	2.56	2.99	—	3.0	0.003	0.62	0.0	0.05	13.64	0.00	2.211	10.50	1.09	5.8	94.2	0.0	-2.54	0.51	0.62	2.00	2.9	0.008	0.98	0.0	0.05	16.95	0.01	2.004	19.02	6.55	9.6	90.4	0.0	-2.34	1.64	0.50	0.66	1.40	8142	1038	3	0	0	0	0	logfile
✔	7JNA	22403	2021-12-01	2020-08-04	3.6	3.74	—	3.8	0.004	0.69	0.0	0.04	13.30	0.03	2.215	11.86	0.00	4.3	95.7	0.0	-3.83	0.63	0.71	1.86	3.8	0.017	1.55	0.0	0.05	16.19	0.01	2.014	15.10	0.18	4.0	95.9	0.1	-0.71	0.84	0.68	0.77	2.33	6432	834	9	0	15	0	0	logfile
✔	7CZ6	30507	2021-12-01	2020-09-07	4.1	4.07	—	4.1	0.009	1.62	0.0	0.05	8.57	0.01	1.047	53.34	0.00	8.1	91.9	0.0	-1.66	0.61	0.58	—	4.1	0.004	0.82	0.0	0.05	10.87	0.01	2.091	15.47	0.00	6.2	93.8	0.0	-1.99	0.85	0.61	0.72	—	5442	756	6	0	0	0	0	logfile
✔	7DHi	30681	2021-12-01	2020-11-15	3.26	3.41	—	3.3	0.004	0.76	0.0	0.05	14.45	0.01	2.298	4.37	0.13	5.6	94.4	0.0	-5.36	0.77	0.84	3.51	3.4	0.002	0.61	0.0	0.04	16.25	0.00	2.188	8.41	0.13	4.9	95.1	0.0	-1.42	1.50	0.78	0.86	3.09	7799	1019	6	0	1	2	0	logfile
✔	6ZQi	11364	2021-12-01	2020-07-09	3.8	4.13	3.63	4.1	0.002	0.56	0.0	0.04	12.40	0.00	2.336	5.93	1.12	3.1	96.9	0.0	-2.14	0.67	0.78	0.85	4.1	0.003	0.79	0.0	0.05	15.51	0.00	2.217	11.66	0.93	4.5	95.5	0.0	-0.39	0.73	0.67	0.79	1.33	5032	655	4	0	1	0	0	logfile
✔	7A92	11682	2021-12-01	2020-09-01	4.2	4.58	4.29	4.2	0.007	0.83	0.0	0.06	14.45	0.01	2.222	3.86	1.19	5.2	94.7	0.1	-2.44	0.77	0.64	—	4.2	0.003	0.60	0.0	0.04	13.40	0.00	2.079	6.92	0.00	3.1	96.9	0.0	-0.13	0.77	0.89	0.83	—	10040	1231	5	0	10	0	0	logfile
✔	6XJB	22205	2021-12-01	2020-06-23	3.8	4.06	—	3.9	0.002	0.56	0.0	0.04	13.15	0.00	2.165	9.70	0.00	8.6	91.4	0.0	-3.06	0.88	0.82	1.76	3.9	0.005	0.69	0.0	0.04	15.37	0.00	2.075	14.23	0.46	8.2	91.8	0.0	-1.64	1.83	0.88	0.86	2.01	10070	1277	1	0	0	0	0	logfile
✔	7BSW	30169	2021-12-01	2020-03-31	3.9	3.97	—	3.9	0.006	0.89	0.0	0.21	15.03	0.01	1.719	37.17	0.69	7.4	92.6	0.0	-5.22	0.66	0.79	2.01	3.9	0.003	0.66	0.0	0.04	16.89	0.00	2.192	9.43	0.29	4.4	95.6	0.0	-1.33	0.63	0.66	0.82	1.37	9329	1139	4	0	7	0	0	logfile
✔	7LCK	23276	2021-12-01	2021-01-11	3.24	3.84	3.15	3.6	0.007	1.42	4.0	0.24	15.83	0.01	2.160	7.64	1.16	6.7	93.3	0.0	-0.93	0.69	0.78	2.21	3.7	0.003	0.67	0.0	0.04	16.53	0.00	2.249	5.14	0.29	3.6	96.4	0.0	0.85	0.56	0.66	0.79	2.04	3258	390	1	0	1	11	0	logfile
✔	6Lo8	0935	2021-12-01	2020-01-04	3.83	3.89	—	3.6	0.005	0.87	0.0	0.05	14.88	0.01	2.242	5.11	0.46	3.7	96.1	0.2	-3.08	0.65	0.79	1.72	3.6	0.005	0.90	0.0	0.04	17.08	0.00	2.100	14.32	0.57	5.0	94.9	0.1	1.39	0.92	0.66	0.80	1.60	7972	997	10	0	0	0	0	logfile
✔	6XMF	22257	2021-12-01	2020-06-30	3.1	3.28	—	3.3	0.002	0.56	0.0	0.03	16.46	0.00	2.246	8.52	0.00	6.8	93.2	0.0	-1.78	0.68	0.71	2.25	3.2	0.003	0.61	0.0	0.03	17.72	0.00	2.149	15.63	0.20	9.8	90.2	0.0	-0.48	0.47	0.72	0.76	2.71	7382	627	3	109	1	0	0	logfile
✔	7K10	22619	2021-12-01	2020-09-06	3.3	3.44	—	3.4	0.006	0.98	0.0	0.05	15.43	0.01	2.300	4.19	0.37	10.6	89.3	0.1	-5.28	0.72	0.77	2.12	3.4	0.005	0.72	0.0	0.04	16.51	0.01	2.099	7.64	0.18	9.5	90.4	0.1	-1.67	0.41	0.72	0.78	1.66	10037	1259	1	0	0	0	0	logfile
✔	7B5S	12050	2021-12-01	2020-12-07	3.6	3.59	3.45	3.6	0.006	0.78	0.0	0.04	15.48	0.01	1.997	11.05	0.24	8.7	91.3	0.0	-0.49	0.73	0.83	2.15	3.6	0.003	0.62	0.0	0.04	17.35	0.00	2.172	10.92	0.60	7.7	92.3	0.0	0.85	0.39	0.73	0.82	1.06	7671	931	5	0	5	0	0	logfile
✔	6ZD0	11172	2021-12-01	2020-06-13	4.6	4.62	2.80	3.7	0.004	0.91	0.0	0.05	7.55	0.00	2.207	10.05	0.00	10.1	89.8	0.1	-4.73	0.59	0.58	—	3.7	0.003	0.74	0.0	0.04	5.33	0.00	2.199	10.22	0.00	19.5	80.1	0.4	-4.32	2.53	0.59	0.58	—	7962	1611	6	0	0	0	0	logfile
✘	6YV1	10940	2021-12-01	2020-04-27	3.4	4.09	3.01	3.7	0.002	0.58	0.0	0.04	12.66	0.00	2.272	8.02	1.85	1.0	99.0	0.0	-4.45	0.52	0.77	1.48	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2496	328	1	0	0	0	0	logfile
✔	7K11	22620	2021-12-01	2020-09-06	3.21	3.34	—	3.3	0.005	0.92	0.0	0.05	15.33	0.01	2.271	4.65	0.46	9.6	90.3	0.1	-5.00	0.69	0.76	1.74	3.3	0.003	0.66	0.0	0.04	16.62	0.00	2.225	7.25	0.09	8.7	91.3	0.0	-1.01	1.23	0.70	0.77	1.32	10011	1254	1	0	0	0	0	logfile
✘	7LJD	23391	2021-12-01	2021-01-28	3.2	3.31	—	3.3	0.004	0.90	0.0	0.06	8.40	0.01	2.294	3.63	0.00	2.2	97.8	0.0	-2.10	0.57	0.72	2.46	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8518	1046	6	0	11	0	0	logfile

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