Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6QPW	4616	2021-08-07	2019-02-15	3.3	3.57	—	3.6	0.005	0.99	0.0	0.06	16.01	0.01	2.122	5.83	0.14	5.0	95.0	0.0	-3.55	0.70	0.74	3.06	3.6	0.007	0.79	0.0	0.05	17.60	0.01	2.070	14.68	0.68	6.9	93.1	0.0	-0.87	1.61	0.73	0.78	2.52	6784	839	6	0	4	0	0	logfile
✘	5XNo	6744	2021-08-07	2017-05-23	3.5	3.75	—	3.6	0.009	1.53	0.0	0.06	15.59	0.02	1.208	9.70	0.00	4.1	95.9	0.0	-2.61	0.60	0.79	2.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10020	854	8	0	72	0	0	logfile
✘	6Mi8	9126	2021-08-07	2018-09-19	4.3	4.20	—	4.2	0.007	1.17	0.0	0.07	11.58	0.01	1.262	6.40	0.13	8.8	91.2	0.0	-5.13	0.56	0.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7139	911	6	0	2	0	0	logfile
✔	6NT6	0503	2021-08-07	2019-01-28	4.0	4.22	—	4.1	0.005	0.79	0.0	0.04	11.99	0.01	2.316	3.70	0.00	3.8	96.2	0.0	-3.32	0.69	0.80	—	4.1	0.004	0.78	0.0	0.04	15.97	0.00	2.254	8.70	0.23	5.0	95.0	0.0	1.11	1.46	0.70	0.81	—	4198	556	2	0	0	0	0	logfile
✔	6QJH	4563	2021-08-07	2019-01-24	3.3	3.70	2.77	3.6	0.012	1.21	3.0	0.10	14.39	0.01	2.673	1.49	1.96	7.0	93.0	0.0	-3.22	0.36	0.83	2.97	3.6	0.003	0.62	0.0	0.05	15.67	0.00	2.248	3.74	0.00	2.3	97.7	0.0	-2.64	1.57	0.30	0.77	3.00	1302	177	3	0	0	0	0	logfile
✔	6UET	20756	2021-08-07	2019-09-23	4.1	4.91	—	5.1	0.010	1.58	0.0	0.07	17.24	0.02	1.977	4.64	0.00	0.0	0.0	0.0	—	0.62	0.73	—	5.0	0.007	0.98	0.0	0.05	23.00	0.01	1.764	49.95	0.00	0.0	0.0	0.0	—	0.79	0.67	0.81	—	3869	0	1	119	1	0	1291	logfile
✔	6A6B	6988	2021-08-07	2018-06-27	3.07	3.41	2.07	3.4	0.006	1.07	0.0	0.07	7.61	0.00	2.263	7.15	0.00	11.3	88.7	0.0	-3.85	0.53	0.71	3.91	3.4	0.004	0.71	0.0	0.05	13.90	0.00	2.214	14.59	0.93	7.5	92.5	0.0	-2.72	2.18	0.52	0.71	2.75	5256	756	12	0	0	0	0	logfile
✔	6QJM	4564	2021-08-07	2019-01-24	3.3	3.49	1.95	3.4	0.010	1.01	0.0	0.07	8.06	0.01	2.408	6.17	0.00	9.1	90.9	0.0	-2.36	0.38	0.76	3.31	3.5	0.003	0.60	0.0	0.05	13.64	0.00	2.150	2.81	0.00	5.1	94.9	0.0	-2.35	1.60	0.34	0.74	3.21	846	111	3	0	0	0	0	logfile
✔	6o84	0650	2021-08-07	2019-03-08	3.92	4.04	—	4.0	0.005	0.84	0.0	0.05	14.01	0.00	2.350	2.97	0.64	4.9	95.1	0.0	-5.68	0.60	0.82	2.21	4.0	0.004	0.83	0.0	0.04	16.41	0.01	2.191	9.23	0.32	5.7	94.3	0.0	1.44	1.32	0.61	0.81	2.08	6224	712	2	0	118	0	0	logfile
✔	5FN5	3240	2021-08-07	2015-11-10	4.3	4.62	—	4.3	0.012	1.85	28.0	0.11	18.82	0.01	2.074	13.28	14.00	11.4	84.3	4.3	-1.91	0.65	0.62	—	4.3	0.003	0.83	0.0	0.04	13.95	0.01	2.165	18.63	0.00	7.8	91.5	0.7	-0.79	1.10	0.69	0.79	—	9645	1227	4	0	0	0	0	logfile
✘	5XNN	6743	2021-08-07	2017-05-23	3.6	3.63	—	3.6	0.007	1.44	0.0	0.06	15.66	0.02	1.211	7.54	0.00	4.3	95.6	0.1	-2.86	0.57	0.79	3.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10020	854	8	0	72	0	0	logfile
✔	6N9U	0379	2021-08-07	2018-12-04	3.7	3.80	—	3.7	0.007	0.84	0.0	0.05	12.73	0.01	2.205	3.66	0.34	5.3	94.7	0.0	-4.67	0.75	0.82	3.31	3.7	0.004	0.65	0.0	0.04	16.64	0.00	2.017	7.26	0.34	5.4	94.6	0.0	-1.73	1.14	0.77	0.84	1.96	8822	1063	7	18	4	0	0	logfile
✔	6P6i	20262	2021-08-07	2019-06-04	3.67	3.96	—	3.9	0.007	1.15	1.0	0.06	16.15	0.01	2.248	7.72	0.67	8.7	91.2	0.1	-5.14	0.60	0.73	1.36	3.9	0.004	0.84	0.0	0.04	17.79	0.01	2.201	16.18	0.11	7.9	92.1	0.0	-0.50	0.81	0.63	0.74	0.60	8726	1133	2	0	0	0	0	logfile
✔	6NYB	0541	2021-08-07	2019-02-11	4.1	4.15	—	4.0	0.014	1.76	3.0	0.09	14.33	0.00	2.070	6.74	3.66	5.4	94.4	0.2	-3.02	0.75	0.74	—	4.0	0.004	0.76	0.0	0.04	14.03	0.00	1.971	13.43	0.00	4.5	95.5	0.0	0.35	2.38	0.79	0.81	—	8842	1097	6	0	6	0	0	logfile
✔	6TAR	10425	2021-08-07	2019-10-30	2.8	2.81	—	3.7	0.005	0.91	0.0	0.06	14.53	0.01	2.319	5.38	0.69	8.5	91.5	0.0	-3.91	0.62	0.81	1.84	3.7	0.003	0.61	0.0	0.04	17.18	0.00	2.265	6.37	4.17	6.9	93.1	0.0	0.30	1.39	0.61	0.81	1.69	6715	820	5	0	0	0	0	logfile
✘	6RX4	10049	2021-08-07	2019-06-07	3.3	3.78	3.21	3.8	0.007	1.07	0.0	0.06	10.57	0.01	1.205	5.39	0.14	4.5	95.5	0.0	-4.07	0.67	0.80	2.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7347	884	8	0	31	7	0	logfile
✔	6AVE	7009	2021-08-07	2017-09-02	3.7	3.77	3.69	3.7	0.008	0.90	0.0	0.07	9.43	0.01	2.301	7.29	0.00	5.0	95.0	0.0	-3.23	0.63	0.70	2.82	3.7	0.003	0.67	0.0	0.04	15.48	0.00	2.165	12.31	0.21	2.3	97.7	0.0	0.90	1.31	0.68	0.75	2.15	9657	1272	6	0	6	0	0	logfile
✘	6MHZ	9124	2021-08-07	2018-09-18	4.1	4.03	—	4.0	0.007	1.18	0.0	0.06	11.43	0.01	1.258	9.12	0.39	10.0	89.9	0.1	-4.72	0.50	0.67	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	7112	908	6	0	2	0	0	logfile
✔	6CU7	7618	2021-08-07	2018-03-23	3.5	3.63	—	4.3	0.007	0.99	0.0	0.07	9.61	0.00	2.346	4.58	2.38	15.5	84.5	0.0	-4.74	0.38	0.72	2.52	4.4	0.003	0.67	0.0	0.05	14.26	0.00	2.181	15.38	0.48	14.5	85.5	0.0	-4.70	2.56	0.38	0.72	1.43	4140	600	10	0	0	0	0	logfile
✔	6CU8	7619	2021-08-07	2018-03-23	3.6	3.65	—	4.2	0.004	0.73	0.0	0.06	7.75	0.00	2.412	6.41	0.00	5.1	94.9	0.0	-2.86	0.45	0.73	-0.16	4.3	0.005	0.79	0.0	0.06	12.77	0.00	2.126	17.71	0.97	19.2	80.8	0.0	-3.55	2.57	0.44	0.74	2.25	2880	410	10	0	0	0	0	logfile

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