Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6SG9	10175	2023-04-19	2019-08-03	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	104694	11989	60	146	837	3	0	logfile
✘	6Po1	20406	2023-04-19	2019-07-03	4.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	53244	3407	20	0	18	0	26717	logfile
✔	6J2Q	9771	2023-04-19	2019-01-02	3.8	3.95	—	3.9	0.002	0.40	0.0	0.04	7.17	0.00	2.202	6.58	0.00	5.5	94.4	0.1	-3.50	0.77	0.68	0.88	3.9	0.003	0.74	0.0	0.04	15.50	0.00	2.058	15.76	0.38	4.1	95.8	0.1	-0.48	2.27	0.82	0.76	1.06	106311	13518	47	0	0	0	0	logfile
✔	6ZS5	11388	2023-04-19	2020-07-15	3.5	4.02	3.66	3.8	0.008	1.09	1.0	0.07	13.95	0.01	2.202	4.52	0.00	4.7	95.3	0.0	-2.98	0.67	0.80	2.81	3.9	0.003	0.75	0.0	0.04	15.47	0.00	2.220	9.30	1.86	3.6	96.4	0.0	-1.97	2.35	0.67	0.80	2.50	2036	257	4	0	7	0	0	logfile
✔	8DM2	27524	2023-04-19	2022-07-08	2.91	3.71	2.85	3.6	0.007	1.02	0.0	0.07	12.99	0.01	2.362	4.12	0.44	2.5	97.5	0.0	-0.51	0.57	0.66	2.14	3.6	0.003	0.70	0.0	0.05	16.70	0.00	2.278	8.96	1.78	5.0	95.0	0.0	-0.88	1.72	0.61	0.74	3.47	2104	249	3	0	6	0	0	logfile
✔	8DM0	27522	2023-04-19	2022-07-08	3.21	3.62	3.12	3.5	0.006	1.01	0.0	0.06	12.69	0.01	2.288	0.83	0.00	3.5	96.5	0.0	-1.78	0.59	0.80	3.29	3.6	0.004	0.63	0.0	0.04	14.82	0.00	2.185	8.26	0.00	3.5	96.5	0.0	-0.86	0.48	0.60	0.82	2.80	2480	314	3	0	1	0	0	logfile
✔	8Di5	27439	2023-04-19	2022-06-28	3.04	3.55	3.03	3.5	0.006	0.95	0.0	0.06	12.37	0.01	2.300	4.17	0.38	3.3	96.7	0.0	-2.40	0.65	0.80	4.29	3.5	0.003	0.61	0.0	0.04	16.01	0.00	2.309	11.48	0.75	3.3	96.7	0.0	-1.55	0.53	0.64	0.80	3.57	2467	311	3	0	1	0	0	logfile
✘	7Y38	33591	2023-04-19	2022-06-10	2.8	3.48	2.94	3.3	0.010	0.72	0.0	0.04	14.98	0.00	2.113	3.70	0.04	3.8	96.2	0.1	-0.63	0.78	0.83	2.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	53135	6704	27	3	36	0	0	logfile
✔	7WTJ	32788	2023-04-19	2022-02-04	4.2	4.07	—	4.1	0.006	0.85	3.0	0.05	13.86	0.01	2.242	10.88	0.58	8.9	91.1	0.0	-2.21	0.55	0.79	—	4.0	0.005	0.75	0.0	0.05	14.22	0.00	2.204	11.35	0.00	14.6	85.4	0.0	-2.22	0.37	0.55	0.81	—	3261	424	3	0	0	0	0	logfile
✔	6X0U	21984	2023-04-19	2020-05-17	3.6	3.62	—	3.6	0.004	0.62	0.0	0.04	14.50	0.00	2.277	5.74	0.00	3.7	96.1	0.3	-5.79	0.26	0.78	1.89	3.6	0.002	0.69	0.0	0.04	17.79	0.00	2.197	7.98	0.29	3.2	96.8	0.0	1.27	0.82	0.27	0.79	2.52	3091	398	4	0	0	0	0	logfile
✔	6J30	9773	2023-04-19	2019-01-03	4.5	4.74	—	4.6	0.002	0.44	0.0	0.04	7.35	0.00	2.093	8.60	0.07	6.4	93.4	0.3	-3.38	0.86	0.72	—	4.5	0.004	0.76	0.0	0.04	12.18	0.00	1.918	21.54	0.01	5.4	94.4	0.2	-0.88	1.91	0.89	0.77	—	106227	13504	47	0	0	0	0	logfile
✔	7TX7	26156	2023-04-19	2022-02-07	3.8	4.02	3.76	3.9	0.008	0.76	0.0	0.07	12.94	0.00	2.072	6.28	0.00	1.8	98.2	0.0	3.77	0.44	0.74	1.59	3.9	0.003	0.77	0.0	0.04	16.58	0.00	2.219	9.34	0.33	2.5	97.5	0.0	2.15	1.32	0.46	0.75	1.83	3203	397	1	0	4	0	0	logfile
✘	7WRL	32732	2023-04-19	2022-01-27	3.51	3.69	—	3.6	0.006	1.03	0.0	0.06	14.71	0.01	2.289	5.84	0.00	13.4	86.6	0.0	-4.19	0.64	0.78	2.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3251	419	3	0	0	0	0	logfile
✔	7WR9	32719	2023-04-19	2022-01-26	3.24	3.43	—	3.4	0.006	1.05	1.0	0.06	13.72	0.01	2.350	3.92	1.15	9.6	89.9	0.5	-2.72	0.56	0.81	3.11	3.4	0.003	0.60	0.0	0.04	15.21	0.01	2.184	5.80	0.00	7.2	92.6	0.2	-1.66	0.35	0.56	0.83	2.44	3266	411	5	0	5	0	0	logfile
✔	5M6S	3451	2023-04-19	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	23.24	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.6	0.003	0.63	0.0	0.03	18.81	0.00	1.995	10.68	0.00	6.2	93.8	0.0	2.64	2.46	0.03	0.08	—	1593	98	1	0	0	0	793	logfile
✔	6X0V	21985	2023-04-19	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.49	0.0	0.04	12.98	0.00	2.224	17.83	0.00	5.0	95.0	0.0	2.29	1.20	0.40	0.76	—	1384	211	4	0	0	0	62	logfile
✔	7B0U	11971	2023-04-19	2020-11-22	3.86	4.15	—	4.1	0.004	0.71	4.0	0.04	12.48	0.00	2.196	16.72	0.54	5.8	94.2	0.0	-0.21	0.66	0.74	0.48	4.1	0.004	0.70	0.0	0.04	14.96	0.00	2.096	18.38	0.41	6.8	93.2	0.0	-0.05	0.46	0.67	0.75	0.50	105492	13320	60	0	0	0	0	logfile
✘	7UNC	26620	2023-04-19	2022-04-10	3.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	105726	7924	38	311	9	0	48096	logfile
✔	6YJ5	10816	2023-04-19	2020-04-02	3.5	2.92	3.56	3.3	0.007	0.87	0.0	0.05	13.19	0.01	2.183	4.22	0.00	12.5	87.5	0.0	-5.13	0.42	0.62	3.01	3.3	0.007	0.81	0.0	0.05	15.31	0.01	2.257	11.88	0.61	12.2	87.8	0.0	-2.14	0.81	0.52	0.74	3.59	2061	306	1	0	0	0	0	logfile
✔	7Y7K	33668	2023-04-19	2022-06-22	4.4	4.96	5.46	4.3	0.010	1.63	0.0	0.07	13.11	0.01	2.215	33.93	3.90	10.3	86.1	3.6	-2.50	0.71	0.63	—	4.3	0.003	0.73	0.0	0.04	11.34	0.00	2.127	13.54	0.35	6.0	93.8	0.2	-1.28	1.66	0.73	0.67	—	2942	422	3	0	0	0	0	logfile

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