Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6XoV	22281	2022-12-11	2020-07-07	3.3	3.79	3.30	3.4	0.005	0.76	1.0	0.05	14.28	0.01	2.100	13.99	0.35	5.0	95.0	0.0	-1.92	0.85	0.80	2.36	3.5	0.003	0.66	0.0	0.04	15.23	0.00	2.186	10.74	0.12	3.0	97.0	0.0	0.99	0.98	0.84	0.81	1.86	7755	969	3	0	3	0	0	logfile
✔	6XoT	22279	2022-12-11	2020-07-07	3.9	4.56	3.90	4.1	0.006	1.07	0.0	0.06	14.01	0.01	2.272	6.02	0.23	2.8	97.2	0.0	-1.51	0.86	0.74	0.81	4.2	0.003	0.85	1.0	0.05	15.87	0.00	2.117	17.81	0.47	2.4	97.6	0.0	0.83	1.97	0.87	0.80	1.06	7704	966	1	0	0	0	0	logfile
✔	7CWo	30485	2022-12-11	2020-08-29	3.9	4.25	—	4.1	0.007	1.04	0.0	0.06	9.37	0.01	2.262	9.56	0.28	8.4	91.6	0.0	-3.72	0.58	0.74	2.31	4.1	0.005	0.78	0.0	0.05	14.28	0.00	2.126	21.79	0.28	8.2	91.8	0.0	-2.11	1.72	0.59	0.75	2.34	3254	422	3	0	0	0	0	logfile
✔	7KTU	23030	2022-12-11	2020-11-24	4.15	4.49	—	4.2	0.006	1.05	0.0	0.05	12.61	0.01	2.259	12.91	0.37	4.3	95.7	0.0	-5.35	0.81	0.79	—	4.2	0.003	0.77	0.0	0.04	13.53	0.00	2.146	17.41	0.00	2.9	97.1	0.0	0.02	0.93	0.80	0.76	—	7577	995	1	0	0	0	0	logfile
✔	7JGF	22325	2022-12-11	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.85	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.7	0.002	0.54	0.0	0.04	13.15	0.00	2.122	55.35	0.41	7.3	92.7	0.0	0.66	0.66	0.42	0.46	—	4477	532	1	0	0	0	30	logfile
✔	7LKF	23405	2022-12-11	2021-02-02	2.9	2.97	—	3.0	0.004	0.66	0.0	0.05	12.84	0.01	2.101	5.38	0.00	4.6	95.4	0.0	-0.59	0.70	0.83	4.15	3.0	0.004	0.64	0.0	0.05	16.63	0.00	2.219	5.26	2.64	3.4	96.6	0.0	-0.24	0.38	0.70	0.85	3.94	4139	511	4	0	2	0	0	logfile
✔	7KFZ	22857	2022-12-11	2020-10-15	3.47	4.45	3.43	3.9	0.012	0.80	0.0	0.05	13.42	0.00	1.897	8.91	0.00	3.8	96.2	0.0	-1.10	0.86	0.78	2.74	3.9	0.003	0.55	0.0	0.04	14.10	0.00	1.910	7.99	0.14	1.9	98.1	0.0	2.47	0.51	0.93	0.88	2.81	6592	803	3	0	2	0	0	logfile
✔	7L0Q	23100	2022-12-11	2020-12-12	4.3	4.28	4.01	4.2	0.007	1.07	1.0	0.06	14.95	0.01	2.196	8.09	0.70	6.2	93.5	0.3	-3.51	0.62	0.68	—	4.2	0.003	0.74	0.0	0.04	14.18	0.00	2.134	16.62	0.12	4.7	95.2	0.1	-0.50	1.17	0.64	0.73	—	7891	1002	5	0	0	0	0	logfile
✔	7KTW	23032	2022-12-11	2020-11-24	4.27	4.73	—	4.4	0.007	1.12	0.0	0.05	12.46	0.01	2.214	14.28	0.12	5.1	94.9	0.0	-4.61	0.81	0.82	—	4.4	0.004	0.81	0.0	0.04	13.33	0.00	2.116	20.01	0.12	4.0	96.0	0.0	0.07	0.96	0.80	0.80	—	7577	995	1	0	0	0	0	logfile
✔	7L0R	23101	2022-12-11	2020-12-12	4.2	4.12	4.05	4.0	0.007	1.37	2.0	0.08	13.58	0.01	2.106	10.29	1.05	6.6	93.4	0.0	-3.44	0.61	0.66	—	4.0	0.003	0.79	0.0	0.05	13.26	0.00	2.121	20.08	0.00	4.3	95.7	0.0	-0.22	3.46	0.62	0.74	—	6968	887	5	0	0	0	0	logfile
✔	7DSQ	30841	2022-12-11	2020-12-31	3.4	3.49	—	3.5	0.010	1.18	0.0	0.49	15.73	0.01	2.292	5.94	0.89	8.8	90.3	0.9	-4.52	0.64	0.82	1.74	3.5	0.003	1.22	0.0	0.11	16.17	0.00	2.216	6.80	0.13	8.2	91.7	0.1	-0.26	1.24	0.65	0.83	1.48	7507	935	7	0	11	15	0	logfile
✔	7DSL	30837	2022-12-11	2020-12-31	2.9	3.28	—	3.2	0.013	1.25	0.0	0.49	15.49	0.01	2.055	6.26	1.14	9.1	90.0	0.9	-3.74	0.70	0.86	2.36	3.2	0.003	1.20	0.0	0.11	15.63	0.00	2.117	7.78	2.28	7.1	92.8	0.1	0.48	0.54	0.68	0.86	2.22	7522	935	8	0	12	8	0	logfile
✔	7BH9	12187	2022-12-11	2021-01-11	2.9	3.58	2.91	3.4	0.007	0.76	0.0	0.05	13.23	0.00	2.021	5.17	0.33	4.9	95.1	0.0	-3.10	0.85	0.88	3.70	3.4	0.003	0.55	0.0	0.04	14.94	0.00	2.179	2.63	1.16	2.1	97.9	0.0	0.70	0.39	0.80	0.83	2.54	5876	730	3	0	4	0	0	logfile
✔	6ZLV	11275	2022-12-11	2020-07-01	3.5	3.60	—	3.5	0.011	1.86	4.0	0.12	12.22	0.01	2.221	19.37	2.72	3.7	95.7	0.6	-1.53	0.54	0.79	1.09	3.5	0.004	0.78	0.0	0.05	15.90	0.00	2.136	14.76	0.51	2.6	97.4	0.0	-0.16	1.63	0.54	0.78	2.00	5352	704	4	0	0	0	0	logfile
✔	6M49	30074	2022-12-11	2020-03-06	3.7	4.45	—	4.4	0.008	0.85	0.0	0.05	14.32	0.01	2.079	14.80	0.98	7.1	92.6	0.2	-4.00	0.46	0.70	1.15	4.4	0.003	0.84	0.0	0.04	16.18	0.00	2.192	10.57	0.66	2.9	97.1	0.0	1.84	3.61	0.48	0.73	1.18	3098	420	3	0	1	0	0	logfile
✔	7L0P	23099	2022-12-11	2020-12-12	4.1	3.94	3.91	4.0	0.006	1.06	1.0	0.06	15.23	0.01	2.231	8.67	0.53	6.8	92.9	0.3	-3.81	0.56	0.72	—	4.0	0.003	0.73	0.0	0.04	14.39	0.00	2.157	16.25	0.00	4.7	95.2	0.1	-0.61	0.66	0.60	0.73	—	6953	888	5	0	0	0	0	logfile
✔	7DSK	30835	2022-12-11	2020-12-31	2.9	3.17	—	3.2	0.010	1.11	0.0	0.49	15.38	0.01	1.969	5.01	0.63	8.2	91.3	0.5	-3.42	0.69	0.86	2.76	3.2	0.004	1.18	0.0	0.12	15.63	0.00	2.138	7.19	2.15	7.7	92.2	0.1	0.64	0.56	0.70	0.87	2.58	7524	935	8	0	12	12	0	logfile
✔	7CMH	30406	2022-12-11	2020-07-27	3.4	3.57	—	3.6	0.006	1.05	0.0	0.06	15.38	0.01	2.214	9.49	1.18	8.6	90.7	0.8	-5.98	0.63	0.81	2.75	3.5	0.003	0.69	0.0	0.04	16.28	0.00	2.173	8.21	0.52	6.9	93.0	0.1	-0.81	0.59	0.64	0.82	1.66	7368	928	7	0	10	0	0	logfile
✔	7LV9	23530	2022-12-11	2021-02-24	4.5	7.82	4.59	4.4	0.003	0.64	0.0	0.04	27.26	0.00	1.334	3.02	0.00	3.2	96.8	0.0	-3.35	0.82	0.66	—	4.4	0.005	0.68	0.0	0.04	29.24	0.00	2.127	22.13	0.00	3.3	96.7	0.0	1.18	1.55	0.90	0.85	—	8238	581	8	190	0	0	0	logfile
✔	7LRS	23498	2022-12-11	2021-02-17	3.89	4.36	3.88	4.1	0.003	0.64	0.0	0.04	13.26	0.00	2.181	9.22	0.19	10.7	88.7	0.6	-2.85	0.87	0.79	2.13	4.1	0.003	0.75	0.0	0.04	15.21	0.00	2.143	12.85	0.19	10.4	89.0	0.6	-2.85	0.53	0.88	0.82	1.67	4912	625	5	0	8	0	0	logfile

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