Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7QES	13939	2023-04-19	2021-12-03	2.6	3.37	—	3.0	0.006	0.86	0.0	0.04	13.93	0.00	2.122	3.25	0.00	3.9	96.1	0.0	-0.99	0.77	0.86	3.39	3.0	0.003	0.64	0.0	0.04	15.49	0.00	2.170	4.71	1.22	3.4	96.6	0.0	2.50	1.24	0.78	0.87	2.88	3076	366	6	0	10	14	0	logfile
✔	7US9	26729	2023-04-19	2022-04-23	3.8	3.84	3.64	3.9	0.015	1.58	0.0	0.11	7.31	0.01	2.489	3.45	0.00	2.3	97.7	0.0	1.07	0.59	0.74	4.43	3.8	0.003	0.73	0.0	0.07	13.17	0.01	2.282	8.38	0.00	4.7	95.3	0.0	0.27	1.46	0.60	0.77	2.97	1127	145	3	0	4	0	0	logfile
✔	7CAH	30331	2023-04-19	2020-06-08	3.9	4.13	—	4.0	0.005	0.92	0.0	0.05	13.68	0.01	2.137	18.79	0.00	19.9	79.8	0.3	-5.76	0.68	0.64	2.37	4.0	0.003	0.75	0.0	0.05	14.73	0.01	2.179	14.14	0.37	11.4	88.6	0.0	-3.11	0.60	0.70	0.63	2.02	2889	404	3	0	0	0	0	logfile
✔	6WKT	21708	2023-04-19	2020-04-16	3.4	3.21	3.09	3.3	0.004	0.81	0.0	0.05	13.97	0.01	2.329	0.00	0.00	1.9	98.1	0.0	-3.42	0.65	0.75	3.69	3.3	0.003	0.57	0.0	0.03	16.11	0.00	2.212	10.95	0.00	4.8	95.2	0.0	3.85	1.35	0.64	0.76	3.76	3152	424	4	0	0	0	0	logfile
✔	6YV1	10940	2023-04-19	2020-04-27	3.4	4.09	3.01	3.7	0.002	0.58	0.0	0.04	12.66	0.00	2.272	8.02	1.85	1.0	99.0	0.0	-4.45	0.52	0.76	1.48	3.7	0.003	0.65	0.0	0.04	13.97	0.00	2.248	6.45	0.00	2.2	97.8	0.0	1.32	0.60	0.50	0.86	1.34	2496	328	1	0	0	0	0	logfile
✔	6WYK	21967	2023-04-19	2020-05-13	4.0	4.14	—	4.2	0.007	0.77	0.0	0.05	11.98	0.00	2.223	5.97	0.00	3.4	96.6	0.0	-2.28	0.62	0.77	—	4.2	0.004	0.86	0.0	0.05	16.17	0.00	2.173	13.51	0.31	2.9	97.1	0.0	1.58	0.85	0.62	0.78	—	3083	415	1	0	0	0	0	logfile
✔	8C8P	16490	2023-04-19	2023-01-20	4.1	5.09	4.13	5.5	0.002	0.67	0.0	0.05	13.50	0.00	2.267	6.06	0.00	2.6	97.4	0.0	-2.08	0.66	0.67	—	5.0	0.003	0.74	0.0	0.04	13.37	0.00	2.169	18.39	0.00	4.8	95.2	0.0	-1.28	1.17	0.68	0.71	—	2449	314	2	0	0	0	0	logfile
✔	6CoZ	7545	2023-04-19	2018-03-13	3.36	4.78	—	4.7	0.009	1.71	0.0	0.07	5.63	0.01	2.541	0.00	0.00	3.2	96.2	0.6	-2.49	0.78	0.68	—	4.4	0.003	0.85	0.0	0.04	5.41	0.00	2.334	6.19	0.00	9.6	90.4	0.0	-1.73	1.59	0.82	0.77	—	1586	320	2	0	0	0	0	logfile
✔	7E23	30950	2023-04-19	2021-02-04	3.3	3.62	—	3.6	0.004	0.83	0.0	0.05	14.45	0.01	2.123	14.37	0.00	17.3	82.7	0.0	-3.70	0.70	0.77	2.78	3.6	0.004	0.75	0.0	0.05	16.24	0.01	2.162	14.04	0.30	14.2	85.5	0.3	-3.04	1.16	0.71	0.80	1.62	3133	403	4	0	1	0	0	logfile
✔	8E4o	27894	2023-04-19	2022-08-18	3.43	3.87	3.39	3.6	0.002	0.44	0.0	0.03	11.67	0.01	2.257	5.45	0.45	1.8	98.2	0.0	2.99	0.68	0.73	2.38	3.7	0.003	0.66	0.0	0.03	13.35	0.00	2.024	6.81	0.19	3.0	97.0	0.0	2.90	0.72	0.72	0.80	1.84	53496	3588	8	0	4	0	26024	logfile
✔	8E4N	27893	2023-04-19	2022-08-18	3.07	3.58	3.04	3.3	0.003	0.47	0.0	0.04	11.07	0.01	2.123	8.01	0.00	1.8	98.2	0.0	3.01	0.70	0.79	2.72	3.3	0.003	0.68	0.0	0.03	13.61	0.00	2.129	8.20	0.46	3.0	97.0	0.1	2.62	0.69	0.70	0.79	2.64	52736	3604	8	0	4	0	25460	logfile
✔	6MLU	9146	2023-04-19	2018-09-28	4.0	4.03	—	4.0	0.005	1.05	0.0	0.06	9.86	0.01	2.406	5.97	0.69	10.6	89.4	0.0	-4.38	0.40	0.78	—	4.0	0.005	1.16	0.0	0.06	17.79	0.01	2.194	31.82	1.39	15.2	84.8	0.0	-2.34	3.45	0.43	0.76	—	2516	306	2	0	0	0	0	logfile
✔	7N5F	24188	2023-04-19	2021-06-05	2.7	2.27	2.74	2.0	0.023	1.50	0.0	0.10	9.99	0.01	2.468	0.16	0.00	1.3	98.7	0.0	1.68	0.36	0.75	3.32	1.7	0.003	0.57	0.0	0.04	17.55	0.00	2.307	7.74	1.59	1.6	98.4	0.0	2.51	0.79	0.36	0.78	3.13	3037	386	1	0	1	0	0	logfile
✔	7N5G	24189	2023-04-19	2021-06-05	2.4	2.16	2.42	1.5	0.022	1.51	0.0	0.09	10.57	0.01	2.386	0.17	0.00	0.8	99.2	0.0	1.84	0.40	0.79	3.64	1.5	0.003	0.57	0.0	0.04	16.52	0.00	2.220	4.78	2.61	1.4	98.6	0.0	2.92	1.20	0.39	0.80	2.57	2926	371	1	0	1	0	0	logfile
✔	6MRT	9212	2023-04-19	2018-10-15	2.8	2.93	—	2.9	0.008	0.90	0.0	0.05	10.67	0.01	2.260	1.61	0.82	1.1	98.9	0.0	-1.27	0.70	0.84	3.77	2.9	0.003	0.49	0.0	0.03	15.38	0.00	2.211	3.09	1.33	0.6	99.4	0.0	5.41	3.08	0.73	0.87	2.47	26868	3420	12	0	0	0	0	logfile
✔	8EA0	27970	2023-04-19	2022-08-27	2.56	2.05	2.66	1.9	0.003	0.55	0.0	0.04	12.24	0.00	2.237	8.88	0.00	4.3	95.7	0.0	-0.24	0.72	0.77	2.21	1.9	0.003	0.56	0.0	0.04	15.18	0.00	2.051	8.02	0.84	5.3	94.7	0.0	1.64	0.46	0.74	0.80	3.17	2286	285	1	0	2	0	0	logfile
✔	8CTK	26993	2023-04-19	2022-05-15	3.52	3.87	3.55	3.9	0.003	0.69	0.0	0.05	14.37	0.00	2.347	4.69	0.00	3.8	96.2	0.0	-1.07	0.54	0.70	0.86	3.9	0.004	0.60	0.0	0.04	15.16	0.00	2.247	8.41	0.63	3.8	96.2	0.0	-0.33	0.85	0.52	0.72	0.86	3042	376	2	0	0	0	0	logfile
✔	7LCJ	23275	2023-04-19	2021-01-11	2.82	3.02	2.78	3.1	0.011	1.19	3.0	0.08	13.36	0.01	2.216	8.89	1.16	3.9	96.1	0.0	0.54	0.46	0.80	2.75	3.1	0.002	0.50	0.0	0.03	15.46	0.00	2.255	4.21	1.45	2.1	97.9	0.0	1.41	1.70	0.48	0.82	2.84	3264	390	1	0	1	17	0	logfile
✔	8EQT	28545	2023-04-19	2022-10-09	3.4	3.89	3.34	3.7	0.006	0.89	0.0	0.05	10.95	0.00	2.213	11.78	0.00	2.1	97.9	0.0	0.61	0.62	0.82	3.25	3.7	0.003	0.62	0.0	0.04	16.50	0.00	2.193	12.25	0.87	2.7	97.3	0.0	1.18	0.82	0.65	0.86	3.03	3206	382	4	0	4	0	0	logfile
✔	6X13	21987	2023-04-19	2020-05-18	3.66	3.77	—	3.8	0.007	1.04	1.0	0.05	16.27	0.01	2.340	4.80	0.31	6.5	93.5	0.0	-3.73	0.64	0.84	1.86	3.8	0.003	0.66	0.0	0.04	16.00	0.00	2.254	8.98	0.00	5.3	94.7	0.0	1.35	0.42	0.64	0.84	1.86	3136	417	1	0	1	0	0	logfile

• ← previous
• Page 7 of 372
• next →