Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RU4	24696	2022-11-29	2021-08-16	3.3	3.64	3.27	3.4	0.023	1.89	0.0	0.11	9.81	0.01	2.362	0.60	0.55	3.1	96.9	0.0	0.06	0.75	0.80	3.98	3.4	0.004	0.78	0.0	0.05	14.99	0.00	2.187	10.36	0.82	6.2	93.8	0.0	-1.07	1.41	0.76	0.82	3.07	3382	428	5	0	4	0	0	logfile
✔	6HU7	0273	2022-11-29	2018-10-05	2.8	2.82	2.83	2.9	0.008	0.78	0.0	0.05	9.81	0.01	2.130	10.36	0.36	2.7	96.8	0.5	-3.47	0.49	0.84	4.61	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4890	609	7	0	0	0	0	logfile
✔	7UMQ	26607	2022-11-29	2022-04-07	3.29	3.64	3.16	4.2	0.023	2.11	0.0	0.10	9.85	0.01	2.540	3.14	0.00	10.0	90.0	0.0	-3.35	0.51	0.74	5.90	3.8	0.003	0.80	0.0	0.04	14.16	0.00	2.326	16.18	1.54	10.3	89.7	0.0	-4.95	3.38	0.43	0.75	4.26	4380	620	10	0	0	0	0	logfile
✔	6MLU	9146	2022-11-29	2018-09-28	4.0	4.03	—	4.0	0.005	1.05	0.0	0.06	9.86	0.01	2.406	5.97	0.69	10.6	89.4	0.0	-4.38	0.40	0.78	—	4.0	0.005	1.09	0.0	0.06	17.93	0.01	2.175	31.42	2.78	12.9	87.1	0.0	-2.60	3.41	0.44	0.77	—	2516	306	2	0	0	0	0	logfile
✔	7UHB	26511	2022-11-29	2022-03-26	3.0	3.17	2.97	3.2	0.011	1.35	3.0	0.12	9.86	0.00	2.562	5.08	1.42	3.0	96.6	0.4	-0.52	0.52	0.54	-0.09	3.1	0.004	0.63	0.0	0.04	16.50	0.00	2.265	9.19	2.84	4.1	95.9	0.0	0.51	2.44	0.71	0.84	3.45	2141	270	3	0	3	0	0	logfile
✔	7D4G	30573	2022-11-29	2020-09-23	3.9	4.13	—	4.1	0.006	1.06	1.0	0.06	9.87	0.01	1.917	36.60	0.00	10.7	88.9	0.4	-3.84	0.56	0.52	1.34	4.1	0.004	0.88	0.0	0.04	15.55	0.00	2.183	19.60	1.16	11.5	88.3	0.2	-2.25	3.65	0.64	0.70	1.64	3925	502	3	0	0	0	0	logfile
✘	7TLY	25990	2022-11-29	2022-01-19	3.0	3.01	2.93	3.0	0.010	1.30	2.0	0.08	9.90	0.00	2.556	1.69	0.00	2.5	97.5	0.0	0.36	0.64	0.76	4.98	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3105	408	4	0	4	0	0	logfile
✔	6TJX	10514	2022-11-29	2019-11-27	3.0	3.21	2.52	3.4	0.011	1.10	0.0	0.07	9.93	0.01	2.312	4.11	0.00	4.8	95.2	0.0	-3.93	0.43	0.79	4.74	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4878	642	6	0	0	0	0	logfile
✔	7N5F	24188	2022-11-29	2021-06-05	2.7	2.27	2.74	2.0	0.023	1.50	0.0	0.10	9.99	0.01	2.468	0.16	0.00	1.3	98.7	0.0	1.68	0.36	0.75	3.32	1.7	0.003	0.56	0.0	0.04	17.43	0.00	2.324	7.74	0.95	1.3	98.7	0.0	2.60	0.79	0.35	0.77	3.26	3037	386	1	0	1	0	0	logfile
✔	8CXo	27062	2022-11-29	2022-05-22	3.7	4.10	3.65	4.1	0.003	0.58	0.0	0.04	10.02	0.00	2.329	2.39	0.00	2.7	96.9	0.4	1.90	0.60	0.77	1.79	4.1	0.003	0.75	0.0	0.04	15.76	0.00	2.158	15.14	0.43	4.2	95.8	0.0	1.18	2.09	0.62	0.80	0.81	4392	551	1	0	1	0	0	logfile
✔	7LXW	23577	2022-11-29	2021-03-05	2.8	3.13	2.86	3.2	0.012	1.20	0.0	0.07	10.03	0.01	2.593	0.61	0.00	1.3	98.7	0.0	0.97	0.78	0.81	5.37	3.2	0.003	0.60	0.0	0.05	15.32	0.00	2.264	9.35	1.90	1.7	98.3	0.0	0.52	0.70	0.71	0.82	5.23	2524	317	5	0	5	0	0	logfile
✘	5X1G	6701	2022-11-29	2017-01-25	4.5	7.89	—	37.0	0.008	1.42	0.0	0.05	10.05	0.01	2.345	27.78	0.00	6.9	93.1	0.0	-2.75	0.00	0.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	155	31	1	0	0	0	0	logfile
✔	7JVA	22497	2022-11-29	2020-08-20	3.6	3.93	3.68	3.9	0.016	1.50	0.0	0.09	10.05	0.01	2.398	0.80	0.30	1.0	98.8	0.2	0.87	0.84	0.81	3.50	3.9	0.003	0.72	0.0	0.04	14.65	0.00	2.169	9.91	0.61	3.6	96.4	0.0	-0.01	0.70	0.85	0.82	2.55	3248	420	4	0	3	0	0	logfile
✔	7LXX	23578	2022-11-29	2021-03-05	3.0	2.96	3.03	3.2	0.012	1.18	0.0	0.06	10.07	0.01	2.519	0.76	0.00	3.6	96.4	0.0	0.69	0.75	0.78	4.22	3.1	0.004	0.68	0.0	0.05	14.60	0.00	2.128	10.01	4.21	3.6	96.4	0.0	-0.44	1.60	0.75	0.82	4.59	2740	352	5	0	4	0	0	logfile
✔	7M64	23688	2022-11-29	2021-03-25	4.0	4.02	—	4.3	0.008	1.15	0.0	0.07	10.07	0.00	2.451	19.77	0.00	8.7	91.3	0.0	-3.84	0.52	0.75	—	4.3	0.003	0.90	0.0	0.04	11.30	0.00	2.242	6.78	0.00	5.2	94.8	0.0	-4.00	1.14	0.51	0.74	—	1850	250	10	0	10	0	0	logfile
✔	7LMS	23441	2022-11-29	2021-02-05	3.5	4.13	3.61	4.0	0.019	1.52	0.0	0.09	10.07	0.01	2.432	0.51	0.00	0.2	99.8	0.0	0.57	0.81	0.83	3.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4947	613	4	0	1	0	0	logfile
✔	7LX5	23566	2022-11-29	2021-03-03	3.44	3.85	3.41	3.9	0.005	0.62	0.0	0.04	10.10	0.00	2.198	4.72	0.00	3.4	96.6	0.0	-0.46	0.71	0.81	3.26	3.9	0.003	0.72	0.0	0.04	15.79	0.00	2.166	9.43	1.08	2.9	97.1	0.0	-0.16	1.43	0.70	0.81	3.36	3485	448	3	0	0	0	0	logfile
✔	7SoA	25264	2022-11-29	2021-10-29	3.1	3.33	3.14	3.3	0.010	1.26	0.0	0.08	10.28	0.01	2.194	1.20	0.24	2.0	98.0	0.0	0.99	0.68	0.84	4.69	3.3	0.004	0.59	0.0	0.04	13.33	0.00	2.221	4.12	0.73	2.8	97.2	0.0	0.92	0.57	0.68	0.90	4.89	3850	477	5	0	6	0	0	logfile
✔	6L4S	0833	2022-11-29	2019-10-21	3.37	3.47	—	4.0	0.014	1.36	0.0	0.09	10.28	0.01	2.408	7.28	0.00	5.7	94.3	0.0	-3.73	0.28	0.67	4.12	4.1	0.008	0.87	0.0	0.06	15.50	0.00	2.214	12.64	0.44	14.5	85.5	0.0	-3.63	3.12	0.35	0.75	2.16	2268	330	6	0	0	0	0	logfile
✔	7MSX	23971	2022-11-29	2021-05-12	3.15	3.24	3.04	3.2	0.008	0.62	0.0	0.05	10.30	0.00	2.385	0.95	0.00	1.9	98.1	0.0	0.06	0.77	0.85	3.76	3.2	0.003	0.49	0.0	0.04	15.13	0.00	2.210	5.43	0.49	2.1	97.9	0.0	1.21	1.12	0.79	0.87	3.16	3706	473	1	0	3	0	0	logfile

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