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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6ZGG | 11205 | 2023-08-18 | 2020-06-18 | 3.8 | 4.33 | 4.00 | 4.0 | 0.001 | 0.41 | 0.0 | 0.04 | 5.80 | 0.00 | 2.231 | 3.83 | 1.00 | 12.4 | 87.1 | 0.5 | -2.52 | 0.84 | 0.74 | 0.73 | 4.0 | 0.005 | 0.73 | 0.0 | 0.04 | 11.39 | 0.00 | 2.111 | 11.42 | 0.36 | 5.9 | 94.0 | 0.0 | -0.97 | 1.78 | 0.87 | 0.83 | 1.19 | 25096 | 3207 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 8A64 | 15205 | 2023-08-10 | 2022-06-16 | 4.6 | 7.63 | 4.66 | 4.6 | 0.008 | 0.86 | 0.0 | 0.06 | 5.84 | 0.01 | 2.112 | 20.40 | 0.00 | 5.8 | 94.2 | 0.0 | -1.55 | 0.91 | 0.78 | — | 4.6 | 0.003 | 0.69 | 0.0 | 0.04 | 4.67 | 0.00 | 2.031 | 18.34 | 0.00 | 9.2 | 90.8 | 0.0 | -1.08 | 1.83 | 0.91 | 0.78 | — | 6737 | 1354 | 4 | 0 | 3 | 0 | 0 | logfile |
✘ | 7RWA | 24712 | 2023-08-14 | 2021-08-19 | 4.7 | 5.66 | 4.89 | 4.6 | 0.003 | 0.89 | 0.0 | 0.05 | 5.84 | 0.00 | 1.914 | 2.65 | 0.00 | 5.8 | 93.7 | 0.5 | -0.12 | 0.84 | 0.75 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 16158 | 3244 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7A96 | 11686 | 2023-08-20 | 2020-09-01 | 4.8 | 5.70 | 4.94 | 4.9 | 0.003 | 0.49 | 1.0 | 0.04 | 5.85 | 0.00 | 2.236 | 3.91 | 0.82 | 10.8 | 89.2 | 0.0 | -4.46 | 0.88 | 0.77 | — | 4.9 | 0.002 | 0.63 | 0.0 | 0.04 | 9.04 | 0.00 | 2.114 | 10.16 | 0.00 | 3.3 | 96.6 | 0.0 | -0.85 | 0.87 | 0.89 | 0.82 | — | 29811 | 3783 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5VLZ | 8709 | 2023-08-24 | 2017-04-26 | 4.4 | 4.55 | — | 4.4 | 0.006 | 0.89 | 0.0 | 0.00 | 5.88 | 0.00 | 2.272 | 2.04 | 0.00 | 6.1 | 93.9 | 0.0 | -1.92 | 0.80 | 0.66 | — | 4.4 | 0.002 | 0.73 | 0.0 | 0.00 | 4.75 | 0.00 | 2.276 | 0.95 | 0.00 | 4.8 | 95.2 | 0.0 | -0.40 | 2.02 | 0.83 | 0.78 | — | 96897 | 24179 | 181 | 0 | 0 | 0 | 0 | logfile |
✔ | 5VCA | 8659 | 2023-08-14 | 2017-03-31 | 4.8 | 6.04 | — | 5.9 | 0.021 | 2.64 | 50.0 | 0.15 | 5.91 | 0.01 | 1.097 | 2.19 | 0.00 | 6.9 | 90.0 | 3.1 | -4.41 | 0.73 | 0.70 | — | 5.8 | 0.004 | 0.74 | 0.0 | 0.04 | 6.04 | 0.00 | 2.096 | 8.58 | 0.00 | 15.1 | 84.8 | 0.1 | -2.22 | 2.93 | 0.76 | 0.67 | — | 16080 | 3264 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VE3 | 21153 | 2023-08-17 | 2019-12-28 | 4.3 | 4.68 | 4.39 | 4.4 | 0.005 | 1.17 | 2.0 | 0.07 | 5.96 | 0.01 | 2.179 | 22.46 | 0.00 | 3.4 | 96.3 | 0.3 | -0.31 | 0.81 | 0.69 | — | 4.4 | 0.004 | 0.91 | 0.0 | 0.05 | 7.54 | 0.00 | 2.122 | 11.06 | 0.00 | 11.2 | 88.8 | 0.0 | -2.55 | 1.90 | 0.82 | 0.82 | — | 22484 | 4578 | 14 | 0 | 0 | 0 | 0 | logfile |
✔ | 7N9Y | 24264 | 2023-08-10 | 2021-06-18 | 4.8 | 4.30 | — | 2.2 | 0.019 | 1.07 | 0.0 | 0.00 | 6.04 | 0.00 | 2.538 | 0.59 | 0.00 | 8.5 | 91.1 | 0.3 | -1.98 | 0.49 | 0.33 | — | 2.2 | 0.003 | 1.01 | 0.0 | 0.00 | 4.81 | 0.00 | 2.550 | 7.73 | 0.00 | 18.2 | 81.3 | 0.5 | -4.24 | 2.61 | 0.52 | 0.31 | — | 7515 | 2505 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8i6Q | 35203 | 2023-08-09 | 2023-01-29 | 4.23 | 7.65 | 4.17 | 4.2 | 0.005 | 0.73 | 0.0 | 0.04 | 6.12 | 0.00 | 2.031 | 15.78 | 0.00 | 7.3 | 92.6 | 0.1 | -1.63 | 0.70 | 0.83 | — | 4.3 | 0.006 | 0.81 | 0.0 | 0.04 | 5.74 | 0.00 | 1.976 | 14.06 | 0.00 | 12.3 | 87.4 | 0.3 | -1.52 | 0.96 | 0.69 | 0.83 | — | 3975 | 810 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YLU | 33917 | 2023-08-13 | 2022-07-27 | 4.55 | 4.26 | 5.68 | 4.4 | 0.002 | 0.44 | 0.0 | 0.04 | 6.30 | 0.00 | 1.304 | 3.45 | 0.11 | 1.9 | 98.0 | 0.1 | 2.63 | 0.69 | 0.62 | — | 4.4 | 0.004 | 0.77 | 0.0 | 0.05 | 11.23 | 0.00 | 2.032 | 20.60 | 0.07 | 4.0 | 95.9 | 0.1 | -0.01 | 1.19 | 0.74 | 0.71 | — | 65607 | 8578 | 17 | 0 | 0 | 0 | 0 | logfile |
✔ | 8HK3 | 34843 | 2023-08-10 | 2022-11-24 | 3.2 | 2.28 | 3.11 | 2.1 | 0.002 | 0.42 | 0.0 | 0.04 | 6.31 | 0.00 | 2.069 | 3.40 | 0.11 | 0.9 | 99.1 | 0.0 | -1.02 | 0.74 | 0.73 | 3.34 | 2.2 | 0.003 | 0.57 | 0.0 | 0.04 | 13.67 | 0.00 | 2.179 | 7.32 | 0.85 | 2.9 | 97.1 | 0.0 | 0.98 | 1.21 | 0.77 | 0.79 | 3.00 | 8746 | 1135 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MVU | 24056 | 2023-08-18 | 2021-05-15 | 3.77 | 4.87 | 3.73 | 4.0 | 0.002 | 0.36 | 0.0 | 0.03 | 6.38 | 0.00 | 2.187 | 3.55 | 0.00 | 1.1 | 98.9 | 0.0 | -0.33 | 0.85 | 0.73 | 0.19 | 4.0 | 0.003 | 0.58 | 0.0 | 0.03 | 11.75 | 0.00 | 1.882 | 11.93 | 0.22 | 3.2 | 96.8 | 0.0 | 2.54 | 2.06 | 0.88 | 0.82 | 0.36 | 25645 | 1604 | 2 | 0 | 0 | 0 | 12841 | logfile |
✔ | 7Z8L | 14556 | 2023-08-14 | 2022-03-17 | 4.9 | 4.50 | 4.38 | 4.0 | 0.012 | 1.30 | 0.0 | 0.09 | 6.41 | 0.01 | 2.296 | 0.29 | 0.00 | 1.2 | 98.8 | 0.0 | 1.37 | 0.76 | 0.77 | — | 4.0 | 0.005 | 0.71 | 0.0 | 0.04 | 7.01 | 0.00 | 1.822 | 7.86 | 0.00 | 6.5 | 93.5 | 0.0 | 0.20 | 0.73 | 0.84 | 0.81 | — | 16513 | 3311 | 3 | 0 | 5 | 0 | 0 | logfile |
✔ | 7MJQ | 23882 | 2023-08-14 | 2021-04-20 | 4.2 | 4.29 | — | 4.2 | 0.009 | 1.55 | 0.0 | 0.15 | 6.42 | 0.01 | 1.552 | 6.01 | 0.00 | 9.4 | 90.6 | 0.0 | -1.25 | 0.52 | 0.66 | — | 4.2 | 0.003 | 0.76 | 0.0 | 0.05 | 6.43 | 0.00 | 2.169 | 2.39 | 0.00 | 11.9 | 88.1 | 0.0 | -2.25 | 1.83 | 0.59 | 0.75 | — | 14976 | 2982 | 13 | 0 | 10 | 0 | 0 | logfile |
✔ | 7WD8 | 32434 | 2023-08-09 | 2021-12-21 | 4.3 | 3.48 | — | 3.5 | 0.002 | 0.51 | 0.0 | 0.04 | 6.43 | 0.00 | 2.246 | 8.80 | 0.00 | 4.1 | 95.7 | 0.2 | -0.96 | 0.60 | 0.61 | — | 3.4 | 0.005 | 0.84 | 0.0 | 0.05 | 12.81 | 0.01 | 2.128 | 19.11 | 0.00 | 7.2 | 92.6 | 0.2 | -0.68 | 1.67 | 0.64 | 0.68 | — | 4029 | 524 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MVV | 24057 | 2023-08-18 | 2021-05-15 | 3.22 | 4.20 | 3.24 | 3.5 | 0.002 | 0.36 | 0.0 | 0.03 | 6.43 | 0.00 | 2.161 | 3.07 | 0.07 | 1.3 | 98.7 | 0.0 | -0.66 | 0.88 | 0.76 | 0.50 | 3.6 | 0.002 | 0.53 | 0.0 | 0.03 | 10.98 | 0.00 | 2.021 | 7.18 | 0.07 | 3.0 | 97.0 | 0.0 | 2.84 | 0.96 | 0.89 | 0.82 | 1.13 | 25764 | 1609 | 4 | 0 | 0 | 0 | 12907 | logfile |
✔ | 6B19 | 7031 | 2023-08-09 | 2017-09-18 | 4.5 | 4.61 | — | 4.4 | 0.023 | 1.38 | 0.0 | 0.05 | 6.45 | 0.01 | 2.201 | 16.18 | 0.00 | 19.4 | 80.5 | 0.1 | -5.73 | 0.74 | 0.63 | — | 4.4 | 0.003 | 0.84 | 0.0 | 0.04 | 12.73 | 0.00 | 1.937 | 28.68 | 0.00 | 25.4 | 74.6 | 0.0 | -4.85 | 1.32 | 0.78 | 0.68 | — | 5699 | 907 | 4 | 38 | 0 | 0 | 409 | logfile |
✔ | 7MJP | 23881 | 2023-08-13 | 2021-04-20 | 4.2 | 4.40 | — | 4.3 | 0.008 | 1.11 | 0.0 | 0.07 | 6.51 | 0.01 | 1.477 | 2.76 | 0.00 | 9.1 | 90.9 | 0.0 | -1.16 | 0.51 | 0.65 | — | 4.4 | 0.002 | 0.60 | 0.0 | 0.05 | 4.85 | 0.00 | 2.276 | 0.87 | 0.00 | 6.8 | 93.2 | 0.0 | -0.45 | 0.44 | 0.56 | 0.69 | — | 14163 | 2818 | 10 | 0 | 8 | 0 | 0 | logfile |
✔ | 7TK0 | 25948 | 2023-08-16 | 2022-01-17 | 4.4 | 6.63 | 4.39 | 4.1 | 0.019 | 2.21 | 0.0 | 0.00 | 6.55 | 0.01 | 2.394 | 0.08 | 0.00 | 3.9 | 94.5 | 1.5 | -0.40 | 0.58 | 0.62 | — | 4.1 | 0.003 | 0.80 | 0.0 | 0.00 | 5.24 | 0.00 | 2.105 | 7.94 | 0.00 | 8.9 | 90.9 | 0.3 | -0.45 | 0.81 | 0.83 | 0.81 | — | 20220 | 5054 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JG6 | 22312 | 2023-08-15 | 2020-07-18 | 3.7 | 2.39 | 3.79 | 2.2 | 0.008 | 1.40 | 0.0 | 0.00 | 6.55 | 0.01 | 2.433 | 0.00 | 0.00 | 2.9 | 97.0 | 0.1 | -0.59 | 0.62 | 0.54 | — | 2.3 | 0.004 | 0.90 | 0.0 | 0.00 | 5.83 | 0.00 | 2.226 | 1.17 | 0.00 | 11.4 | 88.6 | 0.0 | -0.80 | 1.65 | 0.71 | 0.69 | — | 19320 | 4819 | 20 | 0 | 11 | 0 | 0 | logfile |