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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6B19 | 7031 | 2022-05-12 | 2017-09-18 | 4.5 | 4.61 | — | 4.4 | 0.023 | 1.38 | 0.0 | 0.05 | 6.45 | 0.01 | 2.201 | 16.18 | 0.00 | 19.4 | 80.5 | 0.1 | -5.73 | 0.74 | 0.63 | — | 4.4 | 0.003 | 0.87 | 0.0 | 0.04 | 13.09 | 0.00 | 1.943 | 28.42 | 0.00 | 24.5 | 75.5 | 0.0 | -5.38 | 1.33 | 0.77 | 0.65 | — | 5699 | 907 | 4 | 38 | 0 | 0 | 409 | logfile |
✔ | 7TK0 | 25948 | 2022-05-14 | 2022-01-17 | 4.4 | 6.63 | 4.39 | 4.1 | 0.019 | 2.21 | 0.0 | 0.00 | 6.55 | 0.01 | 2.394 | 0.08 | 0.00 | 3.9 | 94.5 | 1.5 | -0.40 | 0.58 | 0.62 | — | 4.1 | 0.004 | 0.83 | 0.0 | 0.00 | 5.40 | 0.00 | 2.153 | 9.44 | 0.00 | 10.9 | 88.8 | 0.3 | -0.57 | 0.81 | 0.83 | 0.81 | — | 20220 | 5054 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JG6 | 22312 | 2022-05-14 | 2020-07-18 | 3.7 | 2.39 | 3.79 | 2.2 | 0.008 | 1.40 | 0.0 | 0.00 | 6.55 | 0.01 | 2.433 | 0.00 | 0.00 | 2.9 | 97.0 | 0.1 | -0.59 | 0.62 | 0.54 | — | 2.3 | 0.003 | 0.91 | 0.0 | 0.00 | 5.94 | 0.00 | 2.230 | 1.09 | 0.00 | 10.6 | 89.3 | 0.1 | -1.07 | 1.66 | 0.70 | 0.68 | — | 19320 | 4819 | 20 | 0 | 11 | 0 | 0 | logfile |
✔ | 6QPi | 4614 | 2022-05-12 | 2019-02-14 | 3.3 | 3.37 | 2.73 | 3.4 | 0.005 | 0.70 | 0.0 | 0.04 | 6.59 | 0.01 | 2.432 | 2.09 | 0.00 | 1.4 | 98.6 | 0.0 | -3.02 | 0.39 | 0.62 | — | 3.3 | 0.002 | 0.44 | 0.0 | 0.04 | 4.28 | 0.00 | 2.462 | 1.49 | 0.00 | 2.8 | 97.2 | 0.0 | 2.25 | 1.20 | 0.41 | 0.62 | — | 2288 | 462 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TJZ | 25947 | 2022-05-14 | 2022-01-17 | 4.4 | 7.00 | 4.54 | 4.2 | 0.019 | 2.21 | 0.0 | 0.00 | 6.67 | 0.01 | 2.384 | 0.19 | 0.00 | 4.2 | 94.2 | 1.6 | -0.41 | 0.58 | 0.63 | — | 4.3 | 0.012 | 0.93 | 0.0 | 0.00 | 5.55 | 0.00 | 2.081 | 10.56 | 0.00 | 10.4 | 89.3 | 0.3 | 0.17 | 0.73 | 0.79 | 0.83 | — | 20228 | 5056 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TK8 | 25960 | 2022-05-14 | 2022-01-17 | 4.7 | 7.79 | 12.86 | 4.4 | 0.019 | 2.21 | 0.0 | 0.00 | 6.68 | 0.01 | 2.390 | 0.08 | 0.00 | 4.1 | 94.4 | 1.5 | -0.46 | 0.60 | 0.61 | — | 4.4 | 0.008 | 1.17 | 0.0 | 0.00 | 6.80 | 0.01 | 1.933 | 31.40 | 0.00 | 11.8 | 87.8 | 0.4 | -1.32 | 1.58 | 0.81 | 0.81 | — | 20227 | 5056 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 6YW7 | 10960 | 2022-05-12 | 2020-04-29 | 4.5 | 5.21 | — | 4.7 | 0.021 | 3.50 | 0.0 | 0.09 | 6.70 | 0.01 | 2.034 | 2.17 | 0.00 | 4.5 | 94.7 | 0.9 | -1.45 | 0.57 | 0.32 | — | 4.6 | 0.003 | 1.00 | 0.0 | 0.02 | 5.16 | 0.00 | 2.215 | 9.65 | 0.00 | 10.5 | 89.4 | 0.2 | -3.99 | 6.44 | 0.82 | 0.75 | — | 5426 | 1788 | 9 | 0 | 2 | 0 | 0 | logfile |
✔ | 4UQ8 | 2676 | 2022-05-16 | 2014-06-21 | 4.95 | 5.05 | 4.64 | 4.9 | 0.012 | 2.07 | 23.0 | 1.38 | 6.71 | 0.01 | 1.032 | 64.12 | 25.00 | 0.0 | 0.0 | 0.0 | — | 0.57 | 0.75 | — | 4.9 | 0.013 | 2.54 | 0.0 | 0.41 | 5.50 | 0.00 | 2.100 | 23.02 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.11 | 0.61 | 0.83 | — | 28647 | 33 | 54 | 0 | 5686 | 0 | 0 | logfile |
✔ | 7TJY | 25946 | 2022-05-14 | 2022-01-17 | 3.8 | 4.84 | 3.78 | 3.6 | 0.020 | 2.29 | 0.0 | 0.00 | 6.75 | 0.01 | 2.333 | 0.12 | 0.00 | 4.3 | 94.3 | 1.5 | -0.54 | 0.59 | 0.68 | — | 3.7 | 0.006 | 0.89 | 0.0 | 0.00 | 5.53 | 0.00 | 2.131 | 6.70 | 0.00 | 11.9 | 87.8 | 0.3 | -0.26 | 1.48 | 0.84 | 0.80 | — | 20228 | 5056 | 27 | 0 | 0 | 0 | 0 | logfile |
✔ | 7RAK | 24363 | 2022-05-13 | 2021-07-01 | 3.9 | 4.13 | — | 4.1 | 0.003 | 0.61 | 0.0 | 0.04 | 6.78 | 0.00 | 2.283 | 4.32 | 0.00 | 14.0 | 85.0 | 1.0 | -3.87 | 0.62 | 0.61 | 0.78 | 4.1 | 0.004 | 0.70 | 0.0 | 0.04 | 12.14 | 0.00 | 2.229 | 8.54 | 0.35 | 6.5 | 93.3 | 0.2 | -1.78 | 1.72 | 0.69 | 0.73 | 0.56 | 61296 | 8112 | 32 | 0 | 16 | 0 | 0 | logfile |
✔ | 6PM5 | 20388 | 2022-05-13 | 2019-07-01 | 3.1 | 3.38 | — | 3.4 | 0.001 | 0.42 | 0.0 | 0.06 | 6.80 | 0.00 | 2.275 | 5.10 | 0.00 | 2.4 | 97.6 | 0.0 | -4.42 | 0.52 | 0.78 | 3.48 | 3.4 | 0.003 | 0.65 | 0.0 | 0.04 | 14.29 | 0.00 | 2.238 | 7.72 | 0.41 | 3.2 | 96.8 | 0.0 | -0.31 | 1.12 | 0.58 | 0.85 | 3.86 | 13975 | 1735 | 15 | 0 | 15 | 0 | 0 | logfile |
✔ | 7WK8 | 32562 | 2022-05-12 | 2022-01-08 | 3.61 | 2.50 | — | 2.3 | 0.002 | 0.52 | 0.0 | 0.04 | 6.81 | 0.00 | 2.270 | 7.76 | 0.00 | 4.5 | 95.3 | 0.2 | -1.21 | 0.77 | 0.74 | 4.09 | 2.3 | 0.003 | 0.62 | 0.0 | 0.04 | 13.24 | 0.01 | 2.165 | 10.55 | 0.00 | 3.0 | 96.9 | 0.2 | 0.47 | 1.28 | 0.79 | 0.78 | 3.76 | 3982 | 516 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 3JCF | 6551 | 2022-05-13 | 2015-12-11 | 3.8 | 4.02 | — | 3.9 | 0.004 | 1.03 | 0.0 | 0.04 | 6.81 | 0.00 | 2.057 | 8.41 | 0.00 | 4.6 | 95.4 | 0.0 | -1.63 | 0.74 | 0.81 | 2.11 | 3.9 | 0.003 | 0.66 | 0.0 | 0.04 | 12.69 | 0.00 | 1.975 | 12.25 | 0.13 | 3.6 | 96.4 | 0.0 | 1.83 | 0.69 | 0.74 | 0.85 | 1.74 | 14228 | 1745 | 10 | 0 | 13 | 0 | 0 | logfile |
✔ | 7JG7 | 22313 | 2022-05-14 | 2020-07-18 | 3.5 | 2.41 | 3.57 | 3.4 | 0.008 | 1.54 | 0.0 | 0.00 | 6.82 | 0.01 | 2.433 | 0.00 | 0.00 | 2.9 | 96.9 | 0.1 | -0.73 | 0.63 | 0.55 | — | 2.3 | 0.006 | 1.15 | 0.0 | 0.00 | 7.25 | 0.01 | 2.136 | 3.94 | 0.00 | 14.0 | 85.9 | 0.1 | -2.12 | 1.65 | 0.74 | 0.72 | — | 19316 | 4818 | 20 | 0 | 11 | 0 | 0 | logfile |
✔ | 6WTH | 21896 | 2022-05-13 | 2020-05-02 | 3.06 | 3.56 | 3.08 | 3.4 | 0.002 | 0.54 | 0.0 | 0.04 | 6.83 | 0.00 | 2.217 | 5.08 | 0.84 | 2.2 | 97.8 | 0.0 | -3.50 | 0.72 | 0.75 | 3.88 | 3.4 | 0.003 | 0.54 | 0.0 | 0.04 | 12.61 | 0.00 | 2.188 | 7.37 | 0.28 | 3.8 | 96.2 | 0.0 | -0.75 | 0.60 | 0.78 | 0.87 | 3.74 | 11740 | 1183 | 12 | 0 | 422 | 0 | 0 | logfile |
✔ | 6Y50 | 10688 | 2022-05-13 | 2020-02-24 | 4.1 | 4.22 | — | 4.0 | 0.003 | 0.52 | 0.0 | 0.04 | 6.93 | 0.00 | 0.761 | 13.95 | 0.00 | 5.9 | 93.9 | 0.2 | -3.48 | 0.68 | 0.68 | — | 4.0 | 0.004 | 0.67 | 0.0 | 0.05 | 9.54 | 0.00 | 2.003 | 8.78 | 0.00 | 11.0 | 88.9 | 0.1 | -1.71 | 0.52 | 0.71 | 0.73 | — | 14916 | 2537 | 10 | 50 | 3 | 0 | 0 | logfile |
✔ | 6oLL | 20116 | 2022-05-14 | 2019-04-16 | 4.1 | 4.59 | — | 4.4 | 0.004 | 1.05 | 0.0 | 0.06 | 6.94 | 0.01 | 2.400 | 0.40 | 0.00 | 2.0 | 97.8 | 0.2 | -0.51 | 0.67 | 0.58 | — | 4.4 | 0.004 | 0.78 | 0.0 | 0.04 | 5.43 | 0.00 | 2.174 | 5.73 | 0.00 | 13.1 | 86.9 | 0.0 | -2.32 | 2.07 | 0.74 | 0.68 | — | 10426 | 2114 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oLM | 20117 | 2022-05-14 | 2019-04-16 | 4.4 | 5.29 | — | 4.3 | 0.012 | 1.28 | 0.0 | 0.06 | 6.94 | 0.01 | 2.397 | 0.92 | 0.00 | 2.0 | 98.0 | 0.0 | -0.33 | 0.89 | 0.79 | — | 4.3 | 0.003 | 0.66 | 0.0 | 0.04 | 5.44 | 0.00 | 2.217 | 8.78 | 0.00 | 6.2 | 93.8 | 0.0 | -0.92 | 1.58 | 0.91 | 0.83 | — | 10602 | 2112 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 6MHW | 9120 | 2022-05-16 | 2018-09-18 | 4.0 | 4.10 | 3.97 | 4.0 | 0.004 | 0.62 | 0.0 | 0.13 | 7.02 | 0.00 | 1.933 | 7.04 | 0.00 | 3.4 | 96.6 | 0.0 | -2.09 | 0.79 | 0.77 | — | 4.0 | 0.003 | 0.67 | 0.0 | 0.12 | 12.85 | 0.00 | 1.905 | 10.25 | 0.25 | 5.4 | 94.6 | 0.0 | 1.46 | 1.49 | 0.79 | 0.79 | — | 34414 | 2452 | 4 | 0 | 0 | 0 | 16514 | logfile |
✔ | 7MJP | 23881 | 2022-05-13 | 2021-04-20 | 4.2 | 4.40 | — | 4.3 | 0.007 | 1.11 | 0.0 | 0.07 | 7.09 | 0.01 | 1.477 | 2.76 | 0.00 | 9.1 | 90.9 | 0.0 | -1.16 | 0.51 | 0.65 | — | 4.4 | 0.002 | 0.62 | 0.0 | 0.05 | 5.79 | 0.00 | 2.276 | 1.31 | 0.00 | 9.5 | 90.5 | 0.0 | -0.73 | 0.44 | 0.57 | 0.70 | — | 14163 | 2818 | 10 | 0 | 8 | 0 | 0 | logfile |