Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7SoF	25269	2021-12-01	2021-10-29	3.6	3.79	3.59	3.8	0.010	1.28	1.0	0.07	8.50	0.01	2.563	1.12	0.00	3.4	96.6	0.0	0.64	0.67	0.78	4.10	3.8	0.003	0.64	0.0	0.04	13.13	0.00	2.164	5.33	0.88	2.7	97.3	0.0	0.17	1.37	0.70	0.82	3.60	3735	488	5	0	9	0	0	logfile
✔	6DZY	8942	2021-12-01	2018-07-05	4.1	4.52	4.39	4.6	0.008	0.93	4.0	0.08	8.53	0.01	1.386	9.07	1.32	4.7	95.2	0.1	-2.99	0.42	0.61	—	4.5	0.004	0.85	0.0	0.04	13.23	0.00	2.043	17.96	0.00	5.8	94.1	0.1	-0.81	1.88	0.45	0.69	—	7842	988	5	0	4	0	0	logfile
✔	7BZX	30262	2021-12-01	2020-04-28	4.0	4.19	—	3.2	0.019	2.22	9.0	0.12	8.56	0.01	2.485	2.40	0.00	6.6	92.1	1.3	-2.90	0.47	0.25	—	2.9	0.004	1.07	0.0	0.05	8.41	0.00	2.068	18.09	0.00	18.4	81.5	0.1	-5.13	3.15	0.75	0.57	—	5652	1154	2	0	0	0	0	logfile
✔	7CZ6	30507	2021-12-01	2020-09-07	4.1	4.07	—	4.1	0.009	1.62	0.0	0.05	8.57	0.01	1.047	53.34	0.00	8.1	91.9	0.0	-1.66	0.61	0.58	—	4.1	0.004	0.82	0.0	0.05	10.87	0.01	2.091	15.47	0.00	6.2	93.8	0.0	-1.99	0.85	0.61	0.72	—	5442	756	6	0	0	0	0	logfile
✔	7LJC	23390	2021-12-01	2021-01-28	3.0	2.23	—	2.1	0.005	1.06	0.0	0.07	8.61	0.01	2.282	5.07	0.11	2.8	97.2	0.0	-1.06	0.78	0.81	3.11	2.0	0.003	0.65	0.0	0.04	14.85	0.01	2.118	11.14	1.56	2.5	97.5	0.0	0.56	1.23	0.77	0.79	3.11	8544	1040	6	0	14	0	0	logfile
✔	3JBS	6478	2021-12-01	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.0	0.004	0.63	0.0	0.04	18.27	0.00	2.222	7.93	3.29	1.7	98.3	0.0	0.83	1.30	0.22	0.81	3.95	1401	175	1	0	0	0	0	logfile
✔	6XTB	10618	2021-12-01	2020-01-15	4.3	4.32	—	3.9	0.006	1.17	0.0	0.07	8.68	0.00	2.369	3.00	0.00	15.6	84.4	0.0	-4.66	0.32	0.43	—	4.1	0.004	1.06	0.0	0.05	7.90	0.00	2.205	9.62	0.00	22.1	77.9	0.0	-5.53	2.43	0.34	0.64	—	1161	235	1	0	0	0	0	logfile
✔	7P2Q	13172	2021-12-01	2021-07-06	4.9	4.54	—	4.3	0.003	0.80	0.0	0.05	8.69	0.01	2.264	4.17	0.00	5.0	95.0	0.0	-3.09	0.77	0.72	—	4.3	0.003	0.72	0.0	0.04	12.52	0.00	2.188	13.36	0.00	4.7	95.3	0.0	-0.19	1.62	0.80	0.74	—	4780	587	5	0	5	0	0	logfile
✔	7JVP	22509	2021-12-01	2020-08-22	2.9	3.02	—	3.0	0.005	0.98	0.0	0.07	8.69	0.01	2.208	5.92	0.00	1.3	98.7	0.0	2.55	0.62	0.76	2.94	3.0	0.004	0.61	0.0	0.04	15.73	0.01	2.119	12.36	2.69	2.4	97.6	0.0	0.61	0.84	0.65	0.84	3.01	8486	1041	6	0	12	0	0	logfile
✔	6HD5	0201	2021-12-01	2018-08-17	4.8	6.01	—	5.9	0.001	0.40	0.0	0.03	8.70	0.00	2.289	4.36	0.10	10.5	88.4	1.1	-1.81	0.36	0.32	—	5.9	0.003	0.73	0.0	0.04	11.96	0.00	2.138	15.18	0.00	5.4	94.5	0.1	-0.09	2.01	0.45	0.55	—	9707	1234	3	0	0	0	0	logfile
✔	6VAB	21135	2021-12-01	2019-12-17	4.9	6.51	—	6.8	0.005	0.91	0.0	0.06	8.70	0.01	2.264	14.98	0.00	6.8	93.2	0.0	-3.84	0.71	0.69	—	6.6	0.003	0.67	0.0	0.04	4.71	0.00	2.164	6.82	0.00	6.6	93.4	0.0	-0.11	1.92	0.73	0.69	—	4642	938	4	0	0	0	0	logfile
✔	7JVQ	22510	2021-12-01	2020-08-22	3.0	3.32	—	3.3	0.005	0.99	0.0	0.06	8.71	0.01	2.268	4.24	0.00	3.1	96.9	0.0	-2.33	0.61	0.76	2.77	3.3	0.003	0.61	0.0	0.04	14.64	0.00	2.110	7.06	2.44	1.8	98.2	0.0	0.54	1.25	0.60	0.77	2.36	8485	1047	6	0	9	0	0	logfile
✔	6U5H	20646	2021-12-01	2019-08-27	4.0	3.67	—	3.7	0.005	1.07	0.0	0.06	8.74	0.01	2.234	9.36	0.39	13.6	86.4	0.0	-5.23	0.41	0.68	—	3.7	0.014	1.48	1.0	0.05	15.62	0.01	2.118	24.19	0.00	15.4	84.6	0.0	-5.04	0.93	0.42	0.70	—	7326	954	3	0	0	0	0	logfile
✔	6NBF	0410	2021-12-01	2018-12-07	3.0	3.52	—	3.5	0.005	0.91	0.0	0.06	8.74	0.01	2.307	3.07	0.10	3.0	97.0	0.0	-1.40	0.64	0.79	3.11	3.5	0.005	0.67	0.0	0.04	14.31	0.01	2.070	8.00	2.14	2.2	97.8	0.0	0.34	1.20	0.55	0.77	2.51	9424	1148	7	0	10	0	0	logfile
✔	6TNG	10532	2021-12-01	2019-12-07	4.1	4.25	3.91	4.0	0.008	1.39	0.0	0.00	8.74	0.01	2.183	11.35	0.00	18.9	80.2	0.8	-5.16	0.75	0.70	—	4.0	0.006	1.02	0.0	0.00	7.42	0.01	2.133	21.25	0.00	25.4	74.3	0.3	-3.93	0.35	0.76	0.72	—	8240	2060	2	0	0	0	0	logfile
✔	7JVR	22511	2021-12-01	2020-08-22	2.8	2.21	—	2.0	0.016	0.95	0.0	0.07	8.77	0.01	2.235	4.64	0.00	2.8	97.2	0.0	-0.85	0.74	0.74	2.70	2.1	0.004	0.77	0.0	0.04	14.52	0.00	2.222	15.28	2.06	2.5	97.5	0.0	0.43	0.67	0.76	0.77	2.53	8872	1126	6	0	1	0	0	logfile
✔	5V4S	8633	2021-12-02	2017-03-10	4.2	7.95	—	4.2	0.012	1.56	20.0	0.14	8.80	0.01	2.352	3.29	0.00	6.6	93.1	0.3	-1.95	0.55	0.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10756	1548	4	0	0	0	0	logfile
✔	5V4S	8632	2021-12-02	2017-03-10	4.2	4.02	—	4.2	0.012	1.56	20.0	0.14	8.80	0.01	2.352	3.29	0.00	6.6	93.1	0.3	-1.95	0.58	0.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10756	1548	4	0	0	0	0	logfile
✔	7JSH	22454	2021-12-01	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.004	1.19	0.0	0.04	13.17	0.00	1.948	19.40	0.00	27.4	72.5	0.2	-5.14	6.11	0.74	0.62	—	7916	1904	8	15	0	0	0	logfile
✔	6NBi	0412	2021-12-01	2018-12-07	4.0	4.43	—	4.3	0.005	0.88	0.0	0.05	8.85	0.00	2.337	2.30	0.31	2.8	97.2	0.0	-1.70	0.62	0.74	—	4.3	0.004	0.87	0.0	0.05	16.32	0.01	2.143	18.36	0.62	2.7	97.3	0.0	-0.02	2.55	0.64	0.78	—	9195	1141	7	0	3	0	0	logfile

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