Table showing results for May 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6B19	7031	2022-05-12	2017-09-18	4.5	4.61	—	4.4	0.023	1.38	0.0	0.05	6.45	0.01	2.201	16.18	0.00	19.4	80.5	0.1	-5.73	0.74	0.63	—	4.4	0.003	0.87	0.0	0.04	13.09	0.00	1.943	28.42	0.00	24.5	75.5	0.0	-5.38	1.33	0.77	0.65	—	5699	907	4	38	0	0	409	logfile
✔	7TK0	25948	2022-05-14	2022-01-17	4.4	6.63	4.39	4.1	0.019	2.21	0.0	0.00	6.55	0.01	2.394	0.08	0.00	3.9	94.5	1.5	-0.40	0.58	0.62	—	4.1	0.004	0.83	0.0	0.00	5.40	0.00	2.153	9.44	0.00	10.9	88.8	0.3	-0.57	0.81	0.83	0.81	—	20220	5054	27	0	0	0	0	logfile
✔	7JG6	22312	2022-05-14	2020-07-18	3.7	2.39	3.79	2.2	0.008	1.40	0.0	0.00	6.55	0.01	2.433	0.00	0.00	2.9	97.0	0.1	-0.59	0.62	0.54	—	2.3	0.003	0.91	0.0	0.00	5.94	0.00	2.230	1.09	0.00	10.6	89.3	0.1	-1.07	1.66	0.70	0.68	—	19320	4819	20	0	11	0	0	logfile
✔	6QPi	4614	2022-05-12	2019-02-14	3.3	3.37	2.73	3.4	0.005	0.70	0.0	0.04	6.59	0.01	2.432	2.09	0.00	1.4	98.6	0.0	-3.02	0.39	0.62	—	3.3	0.002	0.44	0.0	0.04	4.28	0.00	2.462	1.49	0.00	2.8	97.2	0.0	2.25	1.20	0.41	0.62	—	2288	462	2	0	0	0	0	logfile
✔	7TJZ	25947	2022-05-14	2022-01-17	4.4	7.00	4.54	4.2	0.019	2.21	0.0	0.00	6.67	0.01	2.384	0.19	0.00	4.2	94.2	1.6	-0.41	0.58	0.63	—	4.3	0.012	0.93	0.0	0.00	5.55	0.00	2.081	10.56	0.00	10.4	89.3	0.3	0.17	0.73	0.79	0.83	—	20228	5056	27	0	0	0	0	logfile
✔	7TK8	25960	2022-05-14	2022-01-17	4.7	7.79	12.86	4.4	0.019	2.21	0.0	0.00	6.68	0.01	2.390	0.08	0.00	4.1	94.4	1.5	-0.46	0.60	0.61	—	4.4	0.008	1.17	0.0	0.00	6.80	0.01	1.933	31.40	0.00	11.8	87.8	0.4	-1.32	1.58	0.81	0.81	—	20227	5056	27	0	0	0	0	logfile
✔	6YW7	10960	2022-05-12	2020-04-29	4.5	5.21	—	4.7	0.021	3.50	0.0	0.09	6.70	0.01	2.034	2.17	0.00	4.5	94.7	0.9	-1.45	0.57	0.32	—	4.6	0.003	1.00	0.0	0.02	5.16	0.00	2.215	9.65	0.00	10.5	89.4	0.2	-3.99	6.44	0.82	0.75	—	5426	1788	9	0	2	0	0	logfile
✔	4UQ8	2676	2022-05-16	2014-06-21	4.95	5.05	4.64	4.9	0.012	2.07	23.0	1.38	6.71	0.01	1.032	64.12	25.00	0.0	0.0	0.0	—	0.57	0.75	—	4.9	0.013	2.54	0.0	0.41	5.50	0.00	2.100	23.02	0.00	0.0	0.0	0.0	—	2.11	0.61	0.83	—	28647	33	54	0	5686	0	0	logfile
✔	7TJY	25946	2022-05-14	2022-01-17	3.8	4.84	3.78	3.6	0.020	2.29	0.0	0.00	6.75	0.01	2.333	0.12	0.00	4.3	94.3	1.5	-0.54	0.59	0.68	—	3.7	0.006	0.89	0.0	0.00	5.53	0.00	2.131	6.70	0.00	11.9	87.8	0.3	-0.26	1.48	0.84	0.80	—	20228	5056	27	0	0	0	0	logfile
✔	7RAK	24363	2022-05-13	2021-07-01	3.9	4.13	—	4.1	0.003	0.61	0.0	0.04	6.78	0.00	2.283	4.32	0.00	14.0	85.0	1.0	-3.87	0.62	0.61	0.78	4.1	0.004	0.70	0.0	0.04	12.14	0.00	2.229	8.54	0.35	6.5	93.3	0.2	-1.78	1.72	0.69	0.73	0.56	61296	8112	32	0	16	0	0	logfile
✔	6PM5	20388	2022-05-13	2019-07-01	3.1	3.38	—	3.4	0.001	0.42	0.0	0.06	6.80	0.00	2.275	5.10	0.00	2.4	97.6	0.0	-4.42	0.52	0.78	3.48	3.4	0.003	0.65	0.0	0.04	14.29	0.00	2.238	7.72	0.41	3.2	96.8	0.0	-0.31	1.12	0.58	0.85	3.86	13975	1735	15	0	15	0	0	logfile
✔	7WK8	32562	2022-05-12	2022-01-08	3.61	2.50	—	2.3	0.002	0.52	0.0	0.04	6.81	0.00	2.270	7.76	0.00	4.5	95.3	0.2	-1.21	0.77	0.74	4.09	2.3	0.003	0.62	0.0	0.04	13.24	0.01	2.165	10.55	0.00	3.0	96.9	0.2	0.47	1.28	0.79	0.78	3.76	3982	516	4	0	0	0	0	logfile
✔	3JCF	6551	2022-05-13	2015-12-11	3.8	4.02	—	3.9	0.004	1.03	0.0	0.04	6.81	0.00	2.057	8.41	0.00	4.6	95.4	0.0	-1.63	0.74	0.81	2.11	3.9	0.003	0.66	0.0	0.04	12.69	0.00	1.975	12.25	0.13	3.6	96.4	0.0	1.83	0.69	0.74	0.85	1.74	14228	1745	10	0	13	0	0	logfile
✔	7JG7	22313	2022-05-14	2020-07-18	3.5	2.41	3.57	3.4	0.008	1.54	0.0	0.00	6.82	0.01	2.433	0.00	0.00	2.9	96.9	0.1	-0.73	0.63	0.55	—	2.3	0.006	1.15	0.0	0.00	7.25	0.01	2.136	3.94	0.00	14.0	85.9	0.1	-2.12	1.65	0.74	0.72	—	19316	4818	20	0	11	0	0	logfile
✔	6WTH	21896	2022-05-13	2020-05-02	3.06	3.56	3.08	3.4	0.002	0.54	0.0	0.04	6.83	0.00	2.217	5.08	0.84	2.2	97.8	0.0	-3.50	0.72	0.75	3.88	3.4	0.003	0.54	0.0	0.04	12.61	0.00	2.188	7.37	0.28	3.8	96.2	0.0	-0.75	0.60	0.78	0.87	3.74	11740	1183	12	0	422	0	0	logfile
✔	6Y50	10688	2022-05-13	2020-02-24	4.1	4.22	—	4.0	0.003	0.52	0.0	0.04	6.93	0.00	0.761	13.95	0.00	5.9	93.9	0.2	-3.48	0.68	0.68	—	4.0	0.004	0.67	0.0	0.05	9.54	0.00	2.003	8.78	0.00	11.0	88.9	0.1	-1.71	0.52	0.71	0.73	—	14916	2537	10	50	3	0	0	logfile
✔	6oLL	20116	2022-05-14	2019-04-16	4.1	4.59	—	4.4	0.004	1.05	0.0	0.06	6.94	0.01	2.400	0.40	0.00	2.0	97.8	0.2	-0.51	0.67	0.58	—	4.4	0.004	0.78	0.0	0.04	5.43	0.00	2.174	5.73	0.00	13.1	86.9	0.0	-2.32	2.07	0.74	0.68	—	10426	2114	6	0	0	0	0	logfile
✔	6oLM	20117	2022-05-14	2019-04-16	4.4	5.29	—	4.3	0.012	1.28	0.0	0.06	6.94	0.01	2.397	0.92	0.00	2.0	98.0	0.0	-0.33	0.89	0.79	—	4.3	0.003	0.66	0.0	0.04	5.44	0.00	2.217	8.78	0.00	6.2	93.8	0.0	-0.92	1.58	0.91	0.83	—	10602	2112	12	0	6	0	0	logfile
✔	6MHW	9120	2022-05-16	2018-09-18	4.0	4.10	3.97	4.0	0.004	0.62	0.0	0.13	7.02	0.00	1.933	7.04	0.00	3.4	96.6	0.0	-2.09	0.79	0.77	—	4.0	0.003	0.67	0.0	0.12	12.85	0.00	1.905	10.25	0.25	5.4	94.6	0.0	1.46	1.49	0.79	0.79	—	34414	2452	4	0	0	0	16514	logfile
✔	7MJP	23881	2022-05-13	2021-04-20	4.2	4.40	—	4.3	0.007	1.11	0.0	0.07	7.09	0.01	1.477	2.76	0.00	9.1	90.9	0.0	-1.16	0.51	0.65	—	4.4	0.002	0.62	0.0	0.05	5.79	0.00	2.276	1.31	0.00	9.5	90.5	0.0	-0.73	0.44	0.57	0.70	—	14163	2818	10	0	8	0	0	logfile

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