Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6oLM	20117	2021-08-09	2019-04-16	4.4	5.29	—	4.3	0.012	1.28	0.0	0.06	6.94	0.01	2.397	0.92	0.00	2.0	98.0	0.0	-0.33	0.89	0.79	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10602	2112	12	0	6	0	0	logfile
✔	6MHW	9120	2021-08-10	2018-09-18	4.0	4.10	3.97	4.0	0.004	0.62	0.0	0.13	7.02	0.00	1.933	7.04	0.00	3.4	96.6	0.0	-2.09	0.79	0.77	—	4.0	0.003	0.67	0.0	0.12	13.28	0.00	1.937	10.48	0.44	6.1	93.9	0.0	1.57	1.53	0.80	0.80	—	34414	2452	4	0	0	0	16514	logfile
✔	6KRE	0757	2021-08-09	2019-08-21	4.45	4.34	—	4.4	0.001	0.39	0.0	0.04	7.11	0.00	2.244	6.03	0.03	4.1	95.8	0.1	-3.50	0.61	0.56	—	4.4	0.004	0.77	0.0	0.04	12.26	0.00	2.121	14.32	0.02	4.3	95.7	0.1	0.01	2.98	0.68	0.65	—	60321	7922	16	0	0	0	0	logfile
✔	6KS7	0759	2021-08-09	2019-08-23	4.62	4.57	—	4.5	0.001	0.39	0.0	0.04	7.11	0.00	2.241	5.70	0.00	4.3	95.7	0.0	-3.50	0.70	0.62	—	4.5	0.004	0.84	0.0	0.05	12.57	0.00	2.088	16.60	0.04	4.0	95.9	0.1	-0.42	2.40	0.75	0.69	—	62022	8131	16	0	0	0	0	logfile
✔	6KS8	0760	2021-08-09	2019-08-23	4.69	4.76	—	4.6	0.001	0.39	0.0	0.04	7.12	0.00	2.228	5.83	0.01	4.4	95.5	0.0	-3.61	0.77	0.67	—	4.6	0.003	0.73	0.0	0.04	11.67	0.00	2.099	18.19	0.06	3.7	96.3	0.0	-0.31	1.99	0.82	0.73	—	61943	8120	16	0	0	0	0	logfile
✔	6J2X	9772	2021-08-08	2019-01-03	3.8	3.99	—	3.9	0.002	0.40	0.0	0.04	7.12	0.00	2.220	6.60	0.00	5.8	94.1	0.1	-3.52	0.80	0.70	0.49	3.9	0.003	0.78	0.0	0.04	15.31	0.00	2.056	16.47	0.43	4.5	95.3	0.1	-0.45	1.91	0.84	0.77	0.96	106176	13501	47	0	0	0	0	logfile
✔	6KRD	0756	2021-08-09	2019-08-21	4.38	4.25	—	4.4	0.001	0.39	0.0	0.04	7.15	0.00	2.226	5.79	0.00	4.5	95.5	0.1	-3.58	0.57	0.52	—	4.3	0.003	0.73	0.0	0.04	12.59	0.00	2.028	13.76	0.01	4.9	95.0	0.1	-0.51	3.29	0.66	0.67	—	61005	8006	16	0	0	0	0	logfile
✔	6J2Q	9771	2021-08-08	2019-01-02	3.8	3.95	—	3.9	0.002	0.40	0.0	0.04	7.17	0.00	2.202	6.51	0.00	5.5	94.4	0.1	-3.50	0.77	0.68	0.88	3.9	0.006	0.84	2.0	0.04	15.46	0.01	1.677	18.62	0.22	4.3	95.6	0.1	-0.62	2.29	0.82	0.76	1.02	106311	13518	47	0	0	0	0	logfile
✔	6DWB	8924	2021-08-08	2018-06-26	3.3	3.43	—	3.4	0.007	0.66	0.0	0.04	7.21	0.01	2.161	2.34	0.00	5.1	94.9	0.0	-6.22	0.61	0.75	2.51	3.4	0.003	0.50	0.0	0.03	13.70	0.00	2.146	4.02	0.25	3.8	96.2	0.0	4.55	1.14	0.76	0.90	2.98	18360	2340	30	0	0	0	0	logfile
✔	6PLQ	20372	2021-08-08	2019-07-01	3.4	4.30	—	4.3	0.001	0.43	0.0	0.04	7.21	0.00	2.285	5.97	0.00	2.0	98.0	0.0	-4.40	0.57	0.36	0.62	3.8	0.004	0.87	0.0	0.05	14.71	0.01	2.123	13.23	0.32	4.3	95.7	0.0	-1.02	2.46	0.76	0.84	2.17	14240	1730	15	0	20	0	0	logfile
✔	6PLP	20371	2021-08-08	2019-07-01	3.3	3.51	—	3.8	0.001	0.43	0.0	0.04	7.21	0.00	2.285	5.97	0.00	2.0	98.0	0.0	-4.40	0.44	0.72	3.32	3.6	0.003	0.63	0.0	0.04	13.63	0.01	2.085	10.07	0.39	3.0	97.0	0.0	-0.84	1.80	0.50	0.79	2.65	14240	1730	15	0	20	0	0	logfile
✔	5GW4	9540	2021-08-09	2016-09-08	4.7	4.89	—	4.8	0.001	0.42	0.0	0.04	7.26	0.00	2.187	6.48	0.00	4.3	95.6	0.1	-3.58	0.77	0.66	—	4.8	0.003	0.74	0.0	0.04	11.82	0.00	2.046	17.06	0.03	4.2	95.8	0.0	0.28	2.59	0.74	0.60	—	64544	8446	16	0	0	0	0	logfile
✔	3JCZ	6630	2021-08-09	2016-03-27	3.26	3.11	—	3.3	0.008	0.70	0.0	0.05	7.32	0.01	2.244	8.50	0.00	7.0	93.0	0.0	-4.42	0.77	0.85	4.34	3.1	0.005	0.69	0.0	0.04	13.91	0.01	2.137	11.11	0.36	5.6	94.4	0.0	-0.30	2.06	0.78	0.87	2.45	23286	2976	6	0	0	0	0	logfile
✔	6J30	9773	2021-08-08	2019-01-03	4.5	4.74	—	4.6	0.002	0.44	0.0	0.04	7.35	0.00	2.093	8.49	0.07	6.4	93.4	0.3	-3.38	0.86	0.72	—	4.5	0.003	0.74	0.0	0.04	12.35	0.00	1.954	20.14	0.01	6.2	93.6	0.2	-0.64	2.39	0.89	0.77	—	106227	13504	47	0	0	0	0	logfile
✔	6DSo	8910	2021-08-07	2018-06-14	3.0	3.30	2.98	3.4	0.009	0.94	0.0	0.06	7.35	0.00	2.431	1.53	0.00	3.2	96.8	0.0	-4.46	0.49	0.81	6.10	3.3	0.010	0.85	0.0	0.05	15.85	0.00	2.179	10.78	1.04	10.9	89.1	0.0	-4.57	1.56	0.51	0.83	5.18	6588	828	12	0	0	0	0	logfile
✔	6MHo	9115	2021-08-10	2018-09-18	3.4	3.50	3.41	3.5	0.005	0.72	0.0	0.04	7.36	0.00	2.108	2.84	0.00	2.7	97.3	0.0	-2.41	0.66	0.76	3.45	3.4	0.003	0.53	0.0	0.03	13.01	0.00	1.990	6.57	0.00	4.5	95.5	0.0	1.40	2.10	0.68	0.80	3.49	32224	2404	4	0	0	0	15184	logfile
✔	5GW5	9541	2021-08-09	2016-09-08	4.6	4.75	—	4.7	0.002	0.58	0.0	0.04	7.37	0.00	2.136	6.83	0.01	4.5	95.4	0.1	-3.73	0.74	0.64	—	4.7	0.003	0.78	0.0	0.05	11.98	0.00	2.102	15.80	0.00	4.1	95.8	0.1	0.04	6.80	0.73	0.62	—	64544	8446	16	0	0	0	0	logfile
✔	5WVK	6694	2021-08-13	2016-12-25	4.2	4.73	—	4.3	0.002	0.43	0.0	0.04	7.38	0.00	2.151	7.46	0.01	6.6	93.3	0.2	-3.70	0.84	0.75	—	4.3	0.003	0.73	0.0	0.04	12.07	0.00	2.053	19.27	0.01	5.2	94.6	0.2	-0.77	2.38	0.88	0.80	—	105261	13392	47	0	0	0	0	logfile
✔	7DCC	30635	2021-08-10	2020-10-24	4.3	4.77	—	4.1	0.002	0.50	0.0	0.04	7.38	0.00	2.279	3.13	1.39	2.3	97.7	0.0	-4.06	0.73	0.56	—	4.3	0.003	0.74	0.0	0.04	10.99	0.01	2.097	20.56	0.03	6.2	93.8	0.0	-2.12	2.65	0.77	0.67	—	35019	4485	9	0	0	0	0	logfile
✔	6E9Y	9020	2021-08-08	2018-08-01	4.3	4.50	—	4.3	0.008	0.73	0.0	0.04	7.51	0.00	1.433	24.85	0.00	3.1	96.9	0.0	-3.58	0.75	0.80	—	4.3	0.003	0.50	0.0	0.03	11.11	0.00	2.030	8.93	0.00	1.3	98.7	0.0	2.74	1.55	0.76	0.82	—	54450	3405	15	0	0	0	28155	logfile

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