Table showing results for April 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5UVN	8608	2023-04-24	2017-02-20	3.96	4.04	—	4.0	0.012	1.13	0.0	0.06	7.90	0.01	2.013	20.37	0.40	8.5	90.9	0.6	-4.03	0.73	0.69	2.65	4.0	0.007	0.91	0.0	0.05	13.29	0.01	2.136	14.41	0.47	10.4	88.8	0.7	-1.96	1.49	0.82	0.83	2.91	16902	2214	6	0	282	0	0	logfile
✘	8HGo	34744	2023-04-21	2022-11-15	3.31	2.35	3.32	2.2	0.004	0.71	0.0	0.05	7.94	0.01	2.284	4.45	0.00	8.0	91.8	0.2	-3.74	0.71	0.68	2.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9227	1178	6	0	8	0	0	logfile
✔	7LRC	23494	2023-04-20	2021-02-16	2.97	4.17	2.92	3.5	0.002	0.50	0.0	0.04	7.94	0.01	1.795	5.33	0.30	0.8	99.2	0.0	3.49	0.72	0.74	3.03	3.5	0.002	0.60	0.0	0.04	11.45	0.00	2.007	9.75	0.90	0.8	99.2	0.0	3.50	0.56	0.76	0.86	3.04	6202	762	6	0	6	0	0	logfile
✔	7WZR	32912	2023-04-28	2022-02-19	4.7	4.70	—	4.4	0.008	1.21	3.0	0.06	7.95	0.01	2.197	7.80	0.00	21.6	77.2	1.2	-4.58	0.76	0.65	—	4.4	0.002	0.67	0.0	0.04	4.72	0.00	2.151	1.89	0.00	11.3	88.4	0.3	-0.14	1.59	0.76	0.69	—	27037	5440	4	0	0	0	0	logfile
✔	8EF5	28066	2023-04-22	2022-09-08	3.3	2.72	3.17	3.3	0.004	0.88	0.0	0.07	7.98	0.01	2.284	4.02	0.00	1.3	98.7	0.0	0.02	0.73	0.76	2.15	3.3	0.004	0.69	0.0	0.04	15.35	0.00	2.118	11.90	0.56	1.9	98.1	0.0	1.03	0.84	0.76	0.81	1.87	11705	1441	9	0	12	0	0	logfile
✔	6X32	22015	2023-04-22	2020-05-21	3.8	3.75	—	3.9	0.001	0.36	0.0	0.03	7.99	0.00	2.266	3.27	0.00	1.4	98.6	0.0	-3.72	0.56	0.69	2.26	3.9	0.004	0.67	0.0	0.04	13.24	0.00	2.114	9.22	0.43	3.1	96.9	0.0	0.55	1.68	0.60	0.74	1.86	114280	14744	16	0	1416	0	0	logfile
✔	7FiN	31604	2023-04-21	2021-07-31	3.1	3.73	—	3.6	0.004	0.81	0.0	0.06	8.00	0.01	2.249	4.31	0.00	2.5	97.5	0.0	-1.11	0.64	0.77	2.24	3.5	0.004	0.67	0.0	0.04	14.39	0.00	2.076	10.20	0.50	3.0	97.0	0.0	1.09	2.34	0.66	0.80	2.03	9524	1169	8	0	8	0	0	logfile
✔	7JW0	22512	2023-04-27	2020-08-24	4.3	4.63	4.41	4.4	0.010	1.54	6.0	0.10	8.01	0.01	2.527	0.37	0.00	2.3	97.5	0.1	1.05	0.81	0.71	—	4.4	0.003	0.64	0.0	0.05	9.97	0.00	2.180	5.50	0.00	3.4	96.6	0.0	0.41	1.28	0.85	0.79	—	26251	4314	27	0	69	0	0	logfile
✔	8HGP	34745	2023-04-21	2022-11-15	4.53	2.79	4.47	2.3	0.003	0.68	0.0	0.05	8.02	0.01	2.270	3.98	0.20	8.5	91.5	0.0	-3.92	0.66	0.64	—	2.0	0.003	0.79	0.0	0.05	11.42	0.01	2.084	16.69	0.10	10.2	89.8	0.0	-2.46	1.01	0.69	0.67	—	9169	1172	6	0	8	0	0	logfile
✔	8EFo	28086	2023-04-22	2022-09-08	2.8	2.69	2.95	3.0	0.004	0.85	0.0	0.06	8.02	0.01	2.241	5.81	0.00	1.5	98.5	0.0	-0.93	0.59	0.76	3.19	2.9	0.002	0.60	0.0	0.04	15.13	0.00	2.153	10.65	2.30	1.8	98.2	0.0	1.38	2.46	0.59	0.81	2.77	11708	1441	9	0	12	0	0	logfile
✔	7FiJ	31599	2023-04-20	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	1.6	0.003	0.71	0.0	0.04	10.87	0.00	2.234	8.95	1.25	10.6	89.4	0.0	-0.78	0.63	0.60	0.54	2.95	3061	561	1	0	0	0	0	logfile
✔	8F7Q	28907	2023-04-22	2022-11-20	3.22	3.34	3.24	3.4	0.004	0.87	0.0	0.07	8.03	0.01	2.262	3.31	0.00	1.4	98.6	0.0	0.89	0.64	0.78	2.57	3.3	0.003	0.53	0.0	0.04	12.74	0.00	2.135	5.66	0.23	1.8	98.2	0.0	2.02	0.66	0.64	0.83	2.76	11994	1484	11	0	10	0	0	logfile
✔	7VXF	32178	2023-04-29	2021-11-12	3.6	4.01	—	3.8	0.002	0.48	0.0	0.04	8.03	0.00	1.780	7.55	0.03	4.0	95.9	0.1	-2.43	0.47	0.48	0.65	3.9	0.003	0.67	0.0	0.04	14.20	0.00	2.036	11.80	0.33	3.9	96.1	0.0	-0.17	1.19	0.56	0.71	1.04	30079	3814	4	0	0	0	0	logfile
✔	7WQ3	32698	2023-04-21	2022-01-24	2.7	2.90	—	3.2	0.011	0.72	0.0	0.06	8.04	0.00	2.189	5.16	0.40	1.0	99.0	0.0	-1.34	0.39	0.47	0.48	3.0	0.003	0.62	0.0	0.04	15.73	0.00	2.165	7.11	2.94	2.4	97.6	0.0	0.81	1.89	0.64	0.82	3.09	9209	1160	7	0	5	0	0	logfile
✔	7WQ4	32699	2023-04-20	2022-01-24	2.6	2.77	—	2.9	0.007	0.61	0.0	0.05	8.04	0.00	1.399	6.69	0.45	0.8	99.2	0.0	-1.07	0.51	0.70	3.03	2.8	0.003	0.56	0.0	0.04	15.87	0.00	2.151	6.33	2.82	1.9	98.1	0.0	0.90	1.28	0.64	0.83	3.61	8290	1048	7	0	2	0	0	logfile
✔	8F7W	28911	2023-04-21	2022-11-20	3.19	3.44	3.14	3.4	0.004	0.80	0.0	0.06	8.06	0.01	2.282	3.96	0.10	1.9	98.1	0.0	-1.80	0.58	0.75	1.92	3.4	0.003	0.58	0.0	0.04	13.69	0.00	2.162	8.41	0.00	2.1	97.9	0.0	0.69	1.23	0.60	0.81	2.39	9087	1145	7	0	5	0	0	logfile
✔	6oCE	20017	2023-04-22	2019-03-23	4.9	4.11	—	4.0	0.006	0.73	0.0	0.04	8.07	0.01	1.868	8.56	0.00	9.9	90.1	0.0	-4.37	0.45	0.60	—	4.0	0.003	0.76	0.0	0.04	12.52	0.01	2.176	12.97	0.00	12.3	87.7	0.0	-2.82	1.19	0.46	0.63	—	11228	1378	2	0	0	0	0	logfile
✔	7X6o	33024	2023-04-26	2022-03-07	3.5	2.65	—	3.8	0.002	0.49	0.0	0.04	8.09	0.00	2.283	3.17	1.82	2.0	98.0	0.0	-3.07	0.60	0.53	0.73	2.1	0.004	0.82	0.0	0.05	12.86	0.00	2.103	19.06	0.29	4.1	95.9	0.0	-1.08	1.58	0.64	0.59	0.94	21609	2787	12	0	0	0	0	logfile
✔	7WoG	32651	2023-04-20	2022-01-21	4.06	2.95	—	2.0	0.001	0.41	0.0	0.04	8.09	0.00	2.293	10.22	3.78	8.0	92.0	0.0	-3.98	0.51	0.51	—	2.2	0.003	0.71	0.0	0.04	10.94	0.00	2.020	21.35	0.00	13.1	86.9	0.0	-2.59	1.02	0.54	0.55	—	3362	433	3	0	0	0	0	logfile
✔	3JD1	6634	2023-04-26	2016-03-28	3.3	2.71	—	3.0	0.015	1.01	0.0	0.06	8.10	0.01	1.935	12.60	0.00	8.2	91.6	0.2	-5.08	0.79	0.80	3.01	2.5	0.004	0.68	0.0	0.04	15.21	0.00	2.159	9.66	0.28	2.8	97.2	0.0	0.47	1.81	0.80	0.85	2.00	23814	2976	12	0	12	0	0	logfile

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