Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VXM	32184	2022-12-16	2021-11-12	3.6	3.96	—	3.8	0.002	0.51	0.0	0.04	7.69	0.00	2.159	8.00	0.00	3.9	95.9	0.2	-2.41	0.49	0.54	0.82	3.8	0.003	0.64	0.0	0.04	14.20	0.00	2.098	11.07	0.21	3.4	96.6	0.0	0.07	1.67	0.58	0.73	1.04	29901	3791	4	0	0	0	0	logfile
✔	7LRD	23495	2022-12-13	2021-02-16	3.22	4.04	3.18	3.2	0.003	0.48	0.0	0.04	7.70	0.00	1.795	4.58	0.25	1.3	98.7	0.0	2.71	0.82	0.76	2.88	3.3	0.005	0.54	0.0	0.04	10.56	0.00	1.986	7.90	0.06	2.5	97.5	0.0	2.47	1.19	0.90	0.88	2.86	14346	1766	8	0	8	0	0	logfile
✔	6oFH	20046	2022-12-12	2019-03-29	3.7	3.79	—	3.8	0.008	0.75	0.0	0.05	7.71	0.01	2.097	3.74	0.00	5.3	94.7	0.0	-6.76	0.59	0.83	1.69	3.8	0.004	0.71	0.0	0.04	17.34	0.00	2.079	10.79	0.24	3.8	96.2	0.0	2.04	0.85	0.60	0.84	0.83	11628	1482	19	0	0	0	0	logfile
✔	7V5G	31724	2022-12-22	2021-08-17	4.47	4.49	—	3.6	0.002	0.50	1.0	0.04	7.72	0.00	2.210	9.89	0.08	5.7	94.2	0.1	-2.80	0.86	0.71	—	3.8	0.004	0.76	0.0	0.05	12.29	0.00	2.038	22.61	0.00	4.8	95.2	0.0	-0.82	2.26	0.90	0.79	—	48150	6193	28	0	0	0	0	logfile
✘	8EF6	28069	2022-12-18	2022-09-08	3.2	2.91	3.02	3.1	0.005	0.87	0.0	0.07	7.72	0.01	2.267	4.07	0.00	1.3	98.7	0.0	0.00	0.59	0.75	2.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11686	1439	9	0	12	0	0	logfile
✔	7QND	14075	2022-12-13	2021-12-20	3.4	3.55	—	3.4	0.002	0.42	0.0	0.04	7.74	0.00	2.210	5.00	0.45	0.6	99.4	0.0	2.54	0.75	0.83	3.55	3.4	0.003	0.66	0.0	0.04	13.56	0.00	2.153	11.47	0.62	1.4	98.6	0.0	1.41	3.37	0.76	0.87	3.52	16810	1995	19	0	33	0	0	logfile
✔	6CU8	7619	2022-12-11	2018-03-23	3.6	3.65	—	4.2	0.004	0.73	0.0	0.06	7.75	0.00	2.412	6.41	0.00	5.1	94.9	0.0	-2.86	0.45	0.73	-0.16	4.2	0.005	0.79	0.0	0.06	12.89	0.00	2.161	16.36	0.65	15.9	84.1	0.0	-3.37	1.79	0.42	0.73	2.58	2880	410	10	0	0	0	0	logfile
✔	6XGC	22180	2022-12-13	2020-06-17	4.1	4.25	—	4.2	0.001	0.39	0.0	0.04	7.78	0.00	2.215	5.92	0.16	2.3	97.7	0.0	1.43	0.80	0.81	—	4.2	0.003	0.66	0.0	0.04	11.15	0.00	2.216	11.51	0.11	3.4	96.6	0.0	0.23	1.32	0.81	0.82	—	17040	2157	21	0	21	0	0	logfile
✔	7TQV	26073	2022-12-13	2022-01-27	3.43	3.72	—	3.7	0.002	0.38	0.0	0.04	7.79	0.00	2.162	5.03	0.82	3.8	96.2	0.0	-0.34	0.68	0.69	2.18	3.6	0.002	0.55	0.0	0.04	12.57	0.00	2.215	8.30	0.27	3.7	96.3	0.0	-0.35	1.51	0.73	0.77	2.03	17792	2083	8	66	0	0	0	logfile
✔	7DK6	30704	2022-12-16	2020-11-23	4.3	3.67	—	3.5	0.003	0.54	0.0	0.04	7.79	0.00	2.096	1.26	0.06	3.0	97.0	0.0	-3.17	0.59	0.45	—	3.5	0.003	0.69	0.0	0.04	12.26	0.00	2.109	16.94	0.06	5.6	94.4	0.0	-1.37	1.83	0.73	0.64	—	31448	4042	7	0	0	0	0	logfile
✔	7PG9	13389	2022-12-21	2021-08-13	3.7	4.05	—	3.7	0.003	0.63	0.0	0.04	7.81	0.00	2.144	8.65	0.02	2.9	97.0	0.1	-2.89	0.85	0.79	2.74	3.7	0.005	0.80	1.0	0.04	14.02	0.00	2.157	12.78	0.37	3.4	96.6	0.0	0.58	0.90	0.90	0.87	2.57	45326	6195	28	0	0	0	0	logfile
✔	7DR6	30824	2022-12-12	2020-12-26	4.1	4.22	—	4.2	0.002	0.55	0.0	0.04	7.81	0.00	2.196	10.15	0.12	4.9	94.9	0.1	-2.74	0.68	0.63	—	4.2	0.004	0.81	0.0	0.05	13.35	0.00	2.062	18.02	0.05	4.2	95.8	0.0	-0.11	2.28	0.74	0.73	—	59957	7661	35	0	0	0	0	logfile
✔	7WKD	32565	2022-12-13	2022-01-09	3.01	2.29	—	3.1	0.007	0.41	1.0	0.04	7.82	0.00	1.978	7.01	0.31	1.4	98.6	0.0	-1.70	0.68	0.66	1.77	3.1	0.017	0.74	0.0	0.04	14.54	0.00	1.933	13.40	0.21	2.8	97.2	0.0	0.58	1.04	0.72	0.74	2.53	17515	1120	6	0	0	0	8712	logfile
✔	6WL1	21815	2022-12-13	2020-04-17	4.0	4.02	—	4.0	0.007	0.81	0.0	0.05	7.85	0.00	2.413	3.17	0.00	0.0	100.0	0.0	-1.08	0.71	0.85	—	4.0	0.004	0.51	0.0	0.04	16.18	0.00	2.242	6.18	1.33	0.0	100.0	0.0	6.14	0.73	0.72	0.86	—	14612	1872	52	0	0	0	0	logfile
✔	6N2P	9332	2022-12-13	2018-11-13	4.0	4.78	—	4.2	0.009	0.87	0.0	0.04	7.86	0.01	2.203	7.41	0.00	12.8	87.2	0.0	-4.67	0.58	0.72	—	4.2	0.002	0.62	0.0	0.04	10.81	0.00	2.162	7.00	0.00	8.6	91.4	0.0	0.39	1.38	0.59	0.82	—	14570	880	10	0	0	0	7380	logfile
✔	6PZi	20535	2022-12-11	2019-07-31	4.5	4.80	—	4.4	0.005	1.13	0.0	0.05	7.87	0.01	2.253	2.60	0.00	6.3	93.7	0.0	-3.83	0.67	0.80	—	4.4	0.003	0.66	0.0	0.04	7.87	0.00	2.155	7.72	0.00	3.5	96.5	0.0	1.89	0.55	0.68	0.83	—	7985	1412	1	0	1	0	0	logfile
✔	7XA3	33086	2022-12-12	2022-03-17	2.9	2.18	—	2.1	0.005	0.85	0.0	0.05	7.87	0.01	2.250	4.34	0.00	2.5	97.5	0.0	0.60	0.75	0.74	3.21	1.8	0.003	0.63	0.0	0.04	14.26	0.00	2.179	9.36	2.19	3.2	96.8	0.0	1.58	0.59	0.77	0.78	2.64	9591	1220	6	0	0	0	0	logfile
✔	7LH3	23335	2022-12-12	2021-01-21	4.3	4.87	—	4.6	0.001	0.40	0.0	0.04	7.88	0.00	2.258	4.81	1.06	1.8	98.2	0.0	2.29	0.61	0.73	—	4.6	0.003	0.63	0.0	0.04	10.63	0.00	2.270	10.51	0.00	3.3	96.7	0.0	1.88	1.12	0.63	0.82	—	10452	1360	2	0	0	0	0	logfile
✔	7DRW	30828	2022-12-14	2020-12-29	4.2	4.34	—	4.3	0.002	0.53	0.0	0.04	7.88	0.00	2.196	8.24	0.00	3.0	96.9	0.1	-2.45	0.62	0.49	—	4.3	0.003	0.75	0.0	0.04	13.01	0.00	2.067	16.67	0.01	3.0	97.0	0.0	0.46	1.86	0.73	0.68	—	71650	9108	42	0	0	0	0	logfile
✔	7VXD	32176	2022-12-16	2021-11-12	4.0	4.60	—	4.2	0.003	0.50	0.0	0.04	7.89	0.00	2.091	7.57	0.03	4.0	95.9	0.2	-2.30	0.70	0.65	—	4.3	0.003	0.71	0.0	0.04	13.85	0.00	2.140	14.85	0.42	3.3	96.7	0.0	-0.46	1.92	0.73	0.73	—	30194	3829	4	0	0	0	0	logfile

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