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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7T8C | 25744 | 2024-03-21 | 2021-12-16 | 4.5 | 3.21 | 4.51 | 4.6 | 0.001 | 0.42 | 0.0 | 0.04 | 7.59 | 0.00 | 2.347 | 5.08 | 0.41 | 3.6 | 96.4 | 0.0 | 0.76 | 0.63 | 0.54 | — | 4.1 | 0.003 | 0.66 | 0.0 | 0.04 | 10.99 | 0.00 | 2.224 | 13.57 | 0.00 | 5.2 | 94.8 | 0.0 | 0.08 | 1.20 | 0.67 | 0.64 | — | 28952 | 3626 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 6L54 | 0837 | 2024-03-18 | 2019-10-22 | 3.43 | 3.58 | — | 3.5 | 0.002 | 0.49 | 0.0 | 0.03 | 7.60 | 0.00 | 1.978 | 61.71 | 0.79 | 8.8 | 91.2 | 0.0 | -3.87 | 0.77 | 0.72 | 1.74 | 3.5 | 0.002 | 0.58 | 0.0 | 0.04 | 13.67 | 0.00 | 1.925 | 68.01 | 3.06 | 10.8 | 89.2 | 0.0 | -1.21 | 0.73 | 0.80 | 0.77 | 1.53 | 20387 | 2608 | 3 | 0 | 2 | 0 | 857 | logfile |
✔ | 7BZY | 30263 | 2024-03-11 | 2020-04-29 | 3.7 | 5.07 | 3.67 | 2.9 | 0.005 | 1.03 | 0.0 | 0.05 | 7.60 | 0.00 | 2.175 | 11.89 | 0.00 | 15.0 | 84.6 | 0.3 | -5.26 | 0.62 | 0.47 | — | 3.4 | 0.003 | 0.82 | 0.0 | 0.05 | 6.08 | 0.00 | 2.106 | 13.54 | 0.00 | 14.3 | 85.7 | 0.0 | -3.30 | 1.23 | 0.85 | 0.74 | — | 6169 | 1260 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7MVZ | 24059 | 2024-03-20 | 2021-05-15 | 2.81 | 3.64 | 2.78 | 3.1 | 0.002 | 0.48 | 0.0 | 0.03 | 7.60 | 0.00 | 2.206 | 2.84 | 0.00 | 1.6 | 98.4 | 0.0 | -1.11 | 0.80 | 0.67 | 0.58 | 3.2 | 0.005 | 0.66 | 0.0 | 0.04 | 13.94 | 0.00 | 1.999 | 15.90 | 1.28 | 4.5 | 95.5 | 0.0 | 0.87 | 1.84 | 0.84 | 0.76 | 1.51 | 26733 | 1707 | 3 | 0 | 0 | 0 | 13421 | logfile |
✔ | 6XLH | 22244 | 2024-03-16 | 2020-06-28 | 2.83 | 2.93 | — | 2.9 | 0.001 | 0.39 | 0.0 | 0.04 | 7.61 | 0.00 | 2.093 | 5.99 | 0.13 | 1.5 | 98.5 | 0.0 | -3.84 | 0.73 | 0.80 | 3.26 | 2.9 | 0.003 | 0.62 | 0.0 | 0.04 | 16.47 | 0.00 | 1.927 | 10.04 | 2.47 | 3.2 | 96.8 | 0.0 | -0.75 | 1.21 | 0.77 | 0.88 | 3.85 | 13608 | 1675 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 6A6B | 6988 | 2024-03-10 | 2018-06-27 | 3.07 | 3.41 | 2.07 | 3.4 | 0.006 | 1.07 | 0.0 | 0.07 | 7.61 | 0.00 | 2.263 | 7.15 | 0.00 | 11.3 | 88.7 | 0.0 | -3.85 | 0.53 | 0.71 | 3.91 | 3.4 | 0.007 | 0.76 | 0.0 | 0.05 | 13.95 | 0.00 | 2.241 | 18.30 | 5.74 | 10.7 | 89.3 | 0.0 | -3.15 | 2.12 | 0.52 | 0.72 | 3.13 | 5256 | 756 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 8CTG | 26989 | 2024-03-10 | 2022-05-14 | 3.8 | 3.16 | 3.72 | 3.3 | 0.004 | 0.98 | 0.0 | 0.05 | 7.62 | 0.01 | 2.113 | 12.33 | 6.90 | 9.7 | 88.5 | 1.8 | -3.04 | 0.57 | 0.35 | -0.17 | 2.3 | 0.004 | 0.92 | 0.0 | 0.04 | 7.32 | 0.01 | 2.256 | 7.71 | 1.15 | 15.6 | 84.1 | 0.3 | -3.25 | 2.05 | 0.60 | 0.45 | 1.36 | 5100 | 1006 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 7WDF | 32437 | 2024-03-22 | 2021-12-21 | 3.9 | 4.20 | — | 4.0 | 0.002 | 0.51 | 0.0 | 0.04 | 7.63 | 0.00 | 2.170 | 7.49 | 0.00 | 4.3 | 95.6 | 0.1 | -1.73 | 0.54 | 0.40 | 0.73 | 4.0 | 0.004 | 0.79 | 0.0 | 0.05 | 14.37 | 0.00 | 2.083 | 21.74 | 2.88 | 5.1 | 94.8 | 0.0 | -0.96 | 1.60 | 0.76 | 0.72 | 0.58 | 31998 | 4101 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 8oLQ | 16961 | 2024-03-10 | 2023-03-30 | 4.0 | 3.17 | 3.52 | 3.7 | 0.003 | 0.49 | 0.0 | 0.05 | 7.64 | 0.00 | 2.207 | 3.69 | 0.00 | 0.0 | 100.0 | 0.0 | -0.52 | 0.25 | 0.70 | — | 3.4 | 0.002 | 0.47 | 0.0 | 0.05 | 13.94 | 0.00 | 2.277 | 7.79 | 2.40 | 4.7 | 95.3 | 0.0 | -1.51 | 1.42 | 0.24 | 0.70 | — | 2445 | 160 | 5 | 0 | 0 | 0 | 1185 | logfile |
✔ | 6MHV | 9119 | 2024-03-23 | 2018-09-18 | 3.5 | 3.64 | 3.43 | 3.6 | 0.006 | 0.85 | 4.0 | 0.13 | 7.65 | 0.00 | 1.624 | 6.49 | 0.00 | 4.1 | 95.9 | 0.0 | -1.96 | 0.75 | 0.80 | 3.89 | 3.6 | 0.003 | 0.65 | 0.0 | 0.12 | 13.37 | 0.00 | 1.945 | 6.18 | 1.11 | 3.1 | 96.9 | 0.0 | 2.01 | 1.85 | 0.76 | 0.82 | 3.80 | 35496 | 2452 | 4 | 0 | 0 | 0 | 17152 | logfile |
✔ | 6D7L | 7823 | 2024-03-14 | 2018-04-25 | 4.0 | 4.10 | 3.93 | 3.9 | 0.004 | 0.86 | 0.0 | 0.05 | 7.65 | 0.01 | 2.273 | 4.18 | 0.00 | 8.5 | 91.5 | 0.0 | -3.90 | 0.73 | 0.72 | — | 3.9 | 0.003 | 0.89 | 0.0 | 0.05 | 15.03 | 0.00 | 2.186 | 14.64 | 1.48 | 10.9 | 89.1 | 0.0 | -0.53 | 2.99 | 0.76 | 0.75 | — | 9172 | 1152 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VXK | 32182 | 2024-03-21 | 2021-11-12 | 3.7 | 4.06 | — | 3.9 | 0.002 | 0.50 | 0.0 | 0.04 | 7.67 | 0.00 | 2.235 | 7.48 | 0.00 | 3.8 | 96.1 | 0.1 | -2.36 | 0.55 | 0.60 | 1.12 | 3.9 | 0.004 | 0.72 | 0.0 | 0.04 | 14.61 | 0.00 | 2.092 | 15.29 | 2.27 | 4.7 | 95.3 | 0.0 | -0.32 | 1.69 | 0.62 | 0.74 | 1.39 | 30079 | 3814 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V5M | 31727 | 2024-03-25 | 2021-08-17 | 3.88 | 4.12 | — | 3.8 | 0.002 | 0.61 | 0.0 | 0.04 | 7.67 | 0.00 | 2.155 | 9.48 | 0.00 | 3.0 | 96.9 | 0.1 | -2.87 | 0.80 | 0.69 | 1.03 | 3.8 | 0.006 | 0.86 | 2.0 | 0.05 | 14.23 | 0.00 | 1.335 | 19.55 | 2.98 | 2.9 | 97.1 | 0.0 | 0.15 | 1.81 | 0.90 | 0.85 | 2.11 | 45340 | 6198 | 28 | 0 | 0 | 0 | 0 | logfile |
✔ | 6MST | 9232 | 2024-03-10 | 2018-10-18 | 2.7 | 2.92 | 1.72 | 2.8 | 0.006 | 0.85 | 0.0 | 0.05 | 7.68 | 0.00 | 2.294 | 1.43 | 0.00 | 1.9 | 98.1 | 0.0 | -4.58 | 0.73 | 0.90 | 7.42 | 2.9 | 0.009 | 0.67 | 0.0 | 0.04 | 15.59 | 0.01 | 2.188 | 6.44 | 0.66 | 3.4 | 96.6 | 0.0 | -3.54 | 1.19 | 0.68 | 0.91 | 7.19 | 5172 | 648 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7X7Y | 33053 | 2024-03-12 | 2022-03-10 | 3.8 | 4.09 | 3.74 | 4.0 | 0.002 | 0.52 | 0.0 | 0.04 | 7.69 | 0.00 | 2.098 | 5.15 | 0.06 | 2.9 | 97.1 | 0.0 | -3.46 | 0.76 | 0.78 | 1.33 | 4.0 | 0.005 | 0.77 | 1.0 | 0.04 | 13.50 | 0.00 | 1.802 | 13.80 | 2.40 | 4.0 | 96.0 | 0.0 | 0.71 | 1.33 | 0.78 | 0.82 | 0.69 | 63007 | 8247 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VXM | 32184 | 2024-03-21 | 2021-11-12 | 3.6 | 3.96 | — | 3.8 | 0.002 | 0.51 | 0.0 | 0.04 | 7.69 | 0.00 | 2.159 | 7.97 | 0.00 | 3.9 | 95.9 | 0.2 | -2.41 | 0.49 | 0.54 | 0.82 | 3.8 | 0.004 | 0.74 | 0.0 | 0.04 | 14.37 | 0.00 | 1.526 | 13.41 | 1.87 | 3.1 | 96.9 | 0.0 | -0.01 | 1.67 | 0.58 | 0.73 | 1.19 | 29901 | 3791 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oFH | 20046 | 2024-03-15 | 2019-03-29 | 3.7 | 3.79 | — | 3.8 | 0.008 | 0.75 | 0.0 | 0.05 | 7.71 | 0.01 | 2.097 | 3.74 | 0.00 | 5.3 | 94.7 | 0.0 | -6.76 | 0.59 | 0.83 | 1.69 | 3.7 | 0.005 | 0.89 | 1.0 | 0.04 | 16.65 | 0.00 | 2.065 | 12.01 | 3.67 | 5.1 | 94.9 | 0.0 | 2.18 | 1.86 | 0.61 | 0.85 | 0.80 | 11628 | 1482 | 19 | 0 | 0 | 0 | 0 | logfile |
✔ | 7V5G | 31724 | 2024-03-25 | 2021-08-17 | 4.47 | 4.49 | — | 3.6 | 0.002 | 0.50 | 1.0 | 0.04 | 7.72 | 0.00 | 2.210 | 9.86 | 0.08 | 5.7 | 94.2 | 0.1 | -2.80 | 0.86 | 0.71 | — | 3.8 | 0.004 | 0.72 | 0.0 | 0.04 | 12.05 | 0.00 | 2.029 | 20.44 | 0.00 | 4.2 | 95.8 | 0.0 | -0.53 | 2.23 | 0.89 | 0.79 | — | 48150 | 6193 | 28 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CU8 | 7619 | 2024-03-10 | 2018-03-23 | 3.6 | 3.65 | — | 4.2 | 0.004 | 0.73 | 0.0 | 0.06 | 7.75 | 0.00 | 2.412 | 6.41 | 0.00 | 5.1 | 94.9 | 0.0 | -2.86 | 0.45 | 0.73 | -0.16 | 4.2 | 0.005 | 0.77 | 0.0 | 0.06 | 11.70 | 0.00 | 2.139 | 16.86 | 3.55 | 14.9 | 85.1 | 0.0 | -2.95 | 1.76 | 0.42 | 0.73 | 2.19 | 2880 | 410 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LRD | 23495 | 2024-03-16 | 2021-02-16 | 3.22 | 4.04 | 3.18 | 3.2 | 0.003 | 0.48 | 0.0 | 0.04 | 7.75 | 0.00 | 1.795 | 4.48 | 0.25 | 1.3 | 98.7 | 0.0 | 2.71 | 0.82 | 0.76 | 2.88 | 3.3 | 0.007 | 0.65 | 0.0 | 0.04 | 10.70 | 0.00 | 1.940 | 9.27 | 0.89 | 2.6 | 97.4 | 0.0 | 2.22 | 1.19 | 0.90 | 0.88 | 2.73 | 14346 | 1766 | 8 | 0 | 8 | 0 | 0 | logfile |