Table showing results for September 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8BQV	16188	2023-09-29	2023-01-18	2.0	1.96	1.89	1.9	0.008	1.01	0.0	0.07	8.75	0.00	0.000	15.01	0.00	6.8	93.2	0.0	-2.59	0.54	0.77	8.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8595	1155	45	0	105	120	0	logfile
✔	7P2Q	13172	2023-09-28	2021-07-06	4.9	4.54	—	4.3	0.004	0.84	0.0	0.05	8.76	0.01	2.264	4.17	0.00	5.0	95.0	0.0	-3.09	0.77	0.72	—	4.2	0.003	0.74	0.0	0.04	12.28	0.00	2.213	12.52	0.00	4.1	95.9	0.0	-0.27	1.68	0.80	0.75	—	4780	587	5	0	5	0	0	logfile
✔	7JVP	22509	2023-09-29	2020-08-22	2.9	3.02	—	3.0	0.005	0.97	0.0	0.07	8.77	0.01	2.208	5.98	0.00	1.3	98.7	0.0	2.55	0.62	0.76	2.94	3.0	0.003	0.57	0.0	0.04	15.53	0.00	2.140	11.54	2.35	2.3	97.7	0.0	0.84	0.82	0.64	0.84	2.81	8486	1041	6	0	12	0	0	logfile
✔	7VAB	31836	2023-09-29	2021-08-28	3.2	3.44	—	3.4	0.004	0.80	0.0	0.06	8.78	0.01	2.270	4.38	0.00	1.9	98.1	0.0	-2.44	0.55	0.70	2.90	3.4	0.003	0.56	0.0	0.04	14.70	0.00	2.120	6.94	0.65	2.7	97.3	0.0	0.78	0.82	0.68	0.82	2.68	8772	1077	7	0	6	0	0	logfile
✔	5V4S	8633	2023-09-30	2017-03-10	4.2	7.95	—	4.2	0.012	1.56	20.0	0.14	8.80	0.01	2.352	3.29	0.00	6.6	93.1	0.3	-1.95	0.55	0.60	—	4.2	0.003	0.62	0.0	0.04	9.90	0.00	2.233	11.27	0.00	2.1	97.9	0.0	2.80	0.88	0.62	0.70	—	10756	1548	4	0	0	0	0	logfile
✔	5V4S	8632	2023-09-30	2017-03-10	4.2	4.02	—	4.2	0.012	1.56	20.0	0.14	8.80	0.01	2.352	3.29	0.00	6.6	93.1	0.3	-1.95	0.58	0.73	—	4.1	0.003	0.56	0.0	0.04	12.67	0.00	2.165	4.59	0.00	2.4	97.6	0.0	3.09	1.04	0.57	0.72	—	10756	1548	4	0	0	0	0	logfile
✔	7JSH	22454	2023-09-28	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.005	1.30	0.0	0.05	13.69	0.01	1.942	27.17	0.00	31.8	67.9	0.3	-5.48	6.11	0.73	0.61	—	7916	1904	8	15	0	0	0	logfile
✔	7WLA	32579	2023-09-30	2022-01-12	3.76	3.09	3.72	3.2	0.002	0.44	0.0	0.04	8.82	0.00	2.197	6.98	4.01	5.1	94.9	0.0	-4.06	0.70	0.68	0.60	3.0	0.004	0.86	0.0	0.05	14.37	0.01	2.047	20.36	0.45	7.1	92.9	0.1	-1.20	1.39	0.72	0.71	0.74	10193	1327	2	0	0	0	0	logfile
✔	7WL7	32576	2023-09-30	2022-01-12	3.51	3.41	—	3.5	0.002	0.50	0.0	0.04	8.84	0.00	2.214	5.97	3.39	4.6	95.3	0.1	-3.63	0.79	0.77	2.09	3.5	0.004	0.96	0.0	0.05	14.50	0.00	1.998	18.25	0.80	7.1	92.7	0.2	-0.46	0.94	0.79	0.79	1.93	10198	1330	2	0	0	0	0	logfile
✔	6NBF	0410	2023-09-29	2018-12-07	3.0	3.52	—	3.5	0.005	0.90	0.0	0.06	8.85	0.01	2.307	3.07	0.10	3.0	97.0	0.0	-1.40	0.64	0.79	3.11	3.5	0.003	0.58	0.0	0.04	13.98	0.00	2.136	6.62	1.83	1.9	98.1	0.0	0.75	1.19	0.54	0.75	2.26	9424	1148	7	0	10	0	0	logfile
✔	6NBi	0412	2023-09-29	2018-12-07	4.0	4.43	—	4.3	0.005	0.88	0.0	0.05	8.85	0.00	2.337	2.35	0.31	2.8	97.2	0.0	-1.70	0.62	0.74	—	4.3	0.003	0.79	0.0	0.04	16.22	0.00	2.115	18.96	0.72	2.7	97.3	0.0	-0.13	2.54	0.64	0.78	—	9195	1141	7	0	3	0	0	logfile
✔	8FMZ	29301	2023-09-29	2022-12-26	2.59	2.79	2.62	2.9	0.004	0.57	0.0	0.04	8.86	0.00	2.264	6.51	0.21	1.7	98.3	0.0	1.58	0.57	0.77	3.79	2.8	0.003	0.56	0.0	0.04	14.48	0.00	2.159	5.47	2.23	2.4	97.6	0.0	1.63	1.34	0.66	0.86	3.79	8768	1126	6	0	0	0	0	logfile
✔	6VTK	21380	2023-09-30	2020-02-12	2.82	3.35	—	3.3	0.005	0.82	0.0	0.05	8.89	0.01	2.287	3.10	0.00	3.2	96.8	0.0	-4.44	0.71	0.81	4.37	3.3	0.003	0.63	0.0	0.04	13.86	0.00	2.103	6.44	1.23	1.8	98.2	0.0	-0.19	1.19	0.71	0.83	3.86	10686	1338	6	0	6	0	0	logfile
✔	7P1J	13162	2023-09-28	2021-07-01	3.04	4.02	2.96	4.0	0.002	0.48	0.0	0.03	8.89	0.00	2.305	5.96	2.29	3.5	96.5	0.0	2.14	0.65	0.71	0.64	4.0	0.003	0.87	0.0	0.04	14.68	0.00	2.227	16.91	0.72	6.3	93.7	0.0	0.73	1.43	0.66	0.74	0.77	6502	868	2	0	0	0	0	logfile
✔	6N0G	9315	2023-09-28	2018-11-07	3.6	3.75	—	3.7	0.008	0.87	0.0	0.06	8.90	0.01	2.232	6.43	0.18	2.7	97.3	0.0	-3.39	0.81	0.85	3.75	3.7	0.005	0.69	0.0	0.04	14.85	0.00	2.087	14.18	0.56	2.3	97.7	0.0	0.17	2.43	0.81	0.86	2.93	55644	7545	57	0	0	0	0	logfile
✔	6BGi	7095	2023-09-28	2017-10-28	3.8	4.07	3.58	4.0	0.008	1.00	0.0	0.05	8.91	0.01	2.002	48.38	0.00	16.1	83.9	0.0	-5.29	0.47	0.64	0.86	4.0	0.004	0.86	0.0	0.04	14.96	0.00	1.980	17.77	0.65	11.9	88.1	0.0	-2.04	1.10	0.48	0.66	1.53	7774	1020	4	0	4	0	0	logfile
✔	7MKH	23894	2023-09-30	2021-04-23	3.3	3.35	—	4.2	0.023	1.99	0.0	0.10	8.93	0.01	2.387	0.43	0.00	6.8	93.2	0.0	-2.24	0.48	0.68	2.35	3.6	0.005	0.75	0.0	0.05	12.79	0.00	2.045	13.32	1.06	10.7	89.3	0.0	-3.80	1.62	0.47	0.66	2.45	11720	750	10	0	0	0	5980	logfile
✔	8iUL	35725	2023-09-29	2023-03-24	2.78	2.69	2.88	3.1	0.007	0.66	1.0	0.06	8.93	0.01	2.116	6.02	0.61	1.4	98.6	0.0	-1.10	0.58	0.73	2.87	3.1	0.003	0.60	0.0	0.04	15.56	0.00	2.110	7.63	2.14	2.4	97.6	0.0	1.13	1.18	0.62	0.85	2.88	9016	1147	5	0	1	0	0	logfile
✔	5oH0	3809	2023-09-28	2017-07-13	4.2	4.36	—	4.3	0.003	0.75	0.0	0.05	8.94	0.00	2.295	3.32	0.00	1.9	98.1	0.0	-3.74	0.64	0.84	—	4.2	0.004	0.59	0.0	0.04	10.80	0.00	2.200	6.03	0.00	4.8	95.2	0.0	-2.26	0.63	0.64	0.86	—	6588	942	6	0	0	0	0	logfile
✔	7TY0	26163	2023-09-30	2022-02-10	3.5	3.62	3.44	3.6	0.013	1.50	1.0	0.11	8.96	0.01	2.417	1.03	0.39	2.1	97.7	0.1	0.78	0.70	0.73	3.93	3.6	0.003	0.65	0.0	0.05	12.69	0.00	2.195	7.49	0.39	3.5	96.5	0.0	0.35	0.60	0.72	0.76	3.65	10640	1522	18	0	24	0	0	logfile

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