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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 8BQV | 16188 | 2023-09-29 | 2023-01-18 | 2.0 | 1.96 | 1.89 | 1.9 | 0.008 | 1.01 | 0.0 | 0.07 | 8.75 | 0.00 | 0.000 | 15.01 | 0.00 | 6.8 | 93.2 | 0.0 | -2.59 | 0.54 | 0.77 | 8.69 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8595 | 1155 | 45 | 0 | 105 | 120 | 0 | logfile |
✔ | 7P2Q | 13172 | 2023-09-28 | 2021-07-06 | 4.9 | 4.54 | — | 4.3 | 0.004 | 0.84 | 0.0 | 0.05 | 8.76 | 0.01 | 2.264 | 4.17 | 0.00 | 5.0 | 95.0 | 0.0 | -3.09 | 0.77 | 0.72 | — | 4.2 | 0.003 | 0.74 | 0.0 | 0.04 | 12.28 | 0.00 | 2.213 | 12.52 | 0.00 | 4.1 | 95.9 | 0.0 | -0.27 | 1.68 | 0.80 | 0.75 | — | 4780 | 587 | 5 | 0 | 5 | 0 | 0 | logfile |
✔ | 7JVP | 22509 | 2023-09-29 | 2020-08-22 | 2.9 | 3.02 | — | 3.0 | 0.005 | 0.97 | 0.0 | 0.07 | 8.77 | 0.01 | 2.208 | 5.98 | 0.00 | 1.3 | 98.7 | 0.0 | 2.55 | 0.62 | 0.76 | 2.94 | 3.0 | 0.003 | 0.57 | 0.0 | 0.04 | 15.53 | 0.00 | 2.140 | 11.54 | 2.35 | 2.3 | 97.7 | 0.0 | 0.84 | 0.82 | 0.64 | 0.84 | 2.81 | 8486 | 1041 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 7VAB | 31836 | 2023-09-29 | 2021-08-28 | 3.2 | 3.44 | — | 3.4 | 0.004 | 0.80 | 0.0 | 0.06 | 8.78 | 0.01 | 2.270 | 4.38 | 0.00 | 1.9 | 98.1 | 0.0 | -2.44 | 0.55 | 0.70 | 2.90 | 3.4 | 0.003 | 0.56 | 0.0 | 0.04 | 14.70 | 0.00 | 2.120 | 6.94 | 0.65 | 2.7 | 97.3 | 0.0 | 0.78 | 0.82 | 0.68 | 0.82 | 2.68 | 8772 | 1077 | 7 | 0 | 6 | 0 | 0 | logfile |
✔ | 5V4S | 8633 | 2023-09-30 | 2017-03-10 | 4.2 | 7.95 | — | 4.2 | 0.012 | 1.56 | 20.0 | 0.14 | 8.80 | 0.01 | 2.352 | 3.29 | 0.00 | 6.6 | 93.1 | 0.3 | -1.95 | 0.55 | 0.60 | — | 4.2 | 0.003 | 0.62 | 0.0 | 0.04 | 9.90 | 0.00 | 2.233 | 11.27 | 0.00 | 2.1 | 97.9 | 0.0 | 2.80 | 0.88 | 0.62 | 0.70 | — | 10756 | 1548 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 5V4S | 8632 | 2023-09-30 | 2017-03-10 | 4.2 | 4.02 | — | 4.2 | 0.012 | 1.56 | 20.0 | 0.14 | 8.80 | 0.01 | 2.352 | 3.29 | 0.00 | 6.6 | 93.1 | 0.3 | -1.95 | 0.58 | 0.73 | — | 4.1 | 0.003 | 0.56 | 0.0 | 0.04 | 12.67 | 0.00 | 2.165 | 4.59 | 0.00 | 2.4 | 97.6 | 0.0 | 3.09 | 1.04 | 0.57 | 0.72 | — | 10756 | 1548 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JSH | 22454 | 2023-09-28 | 2020-08-14 | 4.4 | 7.07 | — | 17.0 | 0.001 | 0.20 | 0.0 | 0.02 | 8.81 | 0.00 | 2.581 | 0.00 | 0.00 | 13.1 | 83.7 | 3.2 | -3.27 | 0.49 | 0.25 | — | 5.3 | 0.005 | 1.30 | 0.0 | 0.05 | 13.69 | 0.01 | 1.942 | 27.17 | 0.00 | 31.8 | 67.9 | 0.3 | -5.48 | 6.11 | 0.73 | 0.61 | — | 7916 | 1904 | 8 | 15 | 0 | 0 | 0 | logfile |
✔ | 7WLA | 32579 | 2023-09-30 | 2022-01-12 | 3.76 | 3.09 | 3.72 | 3.2 | 0.002 | 0.44 | 0.0 | 0.04 | 8.82 | 0.00 | 2.197 | 6.98 | 4.01 | 5.1 | 94.9 | 0.0 | -4.06 | 0.70 | 0.68 | 0.60 | 3.0 | 0.004 | 0.86 | 0.0 | 0.05 | 14.37 | 0.01 | 2.047 | 20.36 | 0.45 | 7.1 | 92.9 | 0.1 | -1.20 | 1.39 | 0.72 | 0.71 | 0.74 | 10193 | 1327 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WL7 | 32576 | 2023-09-30 | 2022-01-12 | 3.51 | 3.41 | — | 3.5 | 0.002 | 0.50 | 0.0 | 0.04 | 8.84 | 0.00 | 2.214 | 5.97 | 3.39 | 4.6 | 95.3 | 0.1 | -3.63 | 0.79 | 0.77 | 2.09 | 3.5 | 0.004 | 0.96 | 0.0 | 0.05 | 14.50 | 0.00 | 1.998 | 18.25 | 0.80 | 7.1 | 92.7 | 0.2 | -0.46 | 0.94 | 0.79 | 0.79 | 1.93 | 10198 | 1330 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NBF | 0410 | 2023-09-29 | 2018-12-07 | 3.0 | 3.52 | — | 3.5 | 0.005 | 0.90 | 0.0 | 0.06 | 8.85 | 0.01 | 2.307 | 3.07 | 0.10 | 3.0 | 97.0 | 0.0 | -1.40 | 0.64 | 0.79 | 3.11 | 3.5 | 0.003 | 0.58 | 0.0 | 0.04 | 13.98 | 0.00 | 2.136 | 6.62 | 1.83 | 1.9 | 98.1 | 0.0 | 0.75 | 1.19 | 0.54 | 0.75 | 2.26 | 9424 | 1148 | 7 | 0 | 10 | 0 | 0 | logfile |
✔ | 6NBi | 0412 | 2023-09-29 | 2018-12-07 | 4.0 | 4.43 | — | 4.3 | 0.005 | 0.88 | 0.0 | 0.05 | 8.85 | 0.00 | 2.337 | 2.35 | 0.31 | 2.8 | 97.2 | 0.0 | -1.70 | 0.62 | 0.74 | — | 4.3 | 0.003 | 0.79 | 0.0 | 0.04 | 16.22 | 0.00 | 2.115 | 18.96 | 0.72 | 2.7 | 97.3 | 0.0 | -0.13 | 2.54 | 0.64 | 0.78 | — | 9195 | 1141 | 7 | 0 | 3 | 0 | 0 | logfile |
✔ | 8FMZ | 29301 | 2023-09-29 | 2022-12-26 | 2.59 | 2.79 | 2.62 | 2.9 | 0.004 | 0.57 | 0.0 | 0.04 | 8.86 | 0.00 | 2.264 | 6.51 | 0.21 | 1.7 | 98.3 | 0.0 | 1.58 | 0.57 | 0.77 | 3.79 | 2.8 | 0.003 | 0.56 | 0.0 | 0.04 | 14.48 | 0.00 | 2.159 | 5.47 | 2.23 | 2.4 | 97.6 | 0.0 | 1.63 | 1.34 | 0.66 | 0.86 | 3.79 | 8768 | 1126 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VTK | 21380 | 2023-09-30 | 2020-02-12 | 2.82 | 3.35 | — | 3.3 | 0.005 | 0.82 | 0.0 | 0.05 | 8.89 | 0.01 | 2.287 | 3.10 | 0.00 | 3.2 | 96.8 | 0.0 | -4.44 | 0.71 | 0.81 | 4.37 | 3.3 | 0.003 | 0.63 | 0.0 | 0.04 | 13.86 | 0.00 | 2.103 | 6.44 | 1.23 | 1.8 | 98.2 | 0.0 | -0.19 | 1.19 | 0.71 | 0.83 | 3.86 | 10686 | 1338 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 7P1J | 13162 | 2023-09-28 | 2021-07-01 | 3.04 | 4.02 | 2.96 | 4.0 | 0.002 | 0.48 | 0.0 | 0.03 | 8.89 | 0.00 | 2.305 | 5.96 | 2.29 | 3.5 | 96.5 | 0.0 | 2.14 | 0.65 | 0.71 | 0.64 | 4.0 | 0.003 | 0.87 | 0.0 | 0.04 | 14.68 | 0.00 | 2.227 | 16.91 | 0.72 | 6.3 | 93.7 | 0.0 | 0.73 | 1.43 | 0.66 | 0.74 | 0.77 | 6502 | 868 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6N0G | 9315 | 2023-09-28 | 2018-11-07 | 3.6 | 3.75 | — | 3.7 | 0.008 | 0.87 | 0.0 | 0.06 | 8.90 | 0.01 | 2.232 | 6.43 | 0.18 | 2.7 | 97.3 | 0.0 | -3.39 | 0.81 | 0.85 | 3.75 | 3.7 | 0.005 | 0.69 | 0.0 | 0.04 | 14.85 | 0.00 | 2.087 | 14.18 | 0.56 | 2.3 | 97.7 | 0.0 | 0.17 | 2.43 | 0.81 | 0.86 | 2.93 | 55644 | 7545 | 57 | 0 | 0 | 0 | 0 | logfile |
✔ | 6BGi | 7095 | 2023-09-28 | 2017-10-28 | 3.8 | 4.07 | 3.58 | 4.0 | 0.008 | 1.00 | 0.0 | 0.05 | 8.91 | 0.01 | 2.002 | 48.38 | 0.00 | 16.1 | 83.9 | 0.0 | -5.29 | 0.47 | 0.64 | 0.86 | 4.0 | 0.004 | 0.86 | 0.0 | 0.04 | 14.96 | 0.00 | 1.980 | 17.77 | 0.65 | 11.9 | 88.1 | 0.0 | -2.04 | 1.10 | 0.48 | 0.66 | 1.53 | 7774 | 1020 | 4 | 0 | 4 | 0 | 0 | logfile |
✔ | 7MKH | 23894 | 2023-09-30 | 2021-04-23 | 3.3 | 3.35 | — | 4.2 | 0.023 | 1.99 | 0.0 | 0.10 | 8.93 | 0.01 | 2.387 | 0.43 | 0.00 | 6.8 | 93.2 | 0.0 | -2.24 | 0.48 | 0.68 | 2.35 | 3.6 | 0.005 | 0.75 | 0.0 | 0.05 | 12.79 | 0.00 | 2.045 | 13.32 | 1.06 | 10.7 | 89.3 | 0.0 | -3.80 | 1.62 | 0.47 | 0.66 | 2.45 | 11720 | 750 | 10 | 0 | 0 | 0 | 5980 | logfile |
✔ | 8iUL | 35725 | 2023-09-29 | 2023-03-24 | 2.78 | 2.69 | 2.88 | 3.1 | 0.007 | 0.66 | 1.0 | 0.06 | 8.93 | 0.01 | 2.116 | 6.02 | 0.61 | 1.4 | 98.6 | 0.0 | -1.10 | 0.58 | 0.73 | 2.87 | 3.1 | 0.003 | 0.60 | 0.0 | 0.04 | 15.56 | 0.00 | 2.110 | 7.63 | 2.14 | 2.4 | 97.6 | 0.0 | 1.13 | 1.18 | 0.62 | 0.85 | 2.88 | 9016 | 1147 | 5 | 0 | 1 | 0 | 0 | logfile |
✔ | 5oH0 | 3809 | 2023-09-28 | 2017-07-13 | 4.2 | 4.36 | — | 4.3 | 0.003 | 0.75 | 0.0 | 0.05 | 8.94 | 0.00 | 2.295 | 3.32 | 0.00 | 1.9 | 98.1 | 0.0 | -3.74 | 0.64 | 0.84 | — | 4.2 | 0.004 | 0.59 | 0.0 | 0.04 | 10.80 | 0.00 | 2.200 | 6.03 | 0.00 | 4.8 | 95.2 | 0.0 | -2.26 | 0.63 | 0.64 | 0.86 | — | 6588 | 942 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 7TY0 | 26163 | 2023-09-30 | 2022-02-10 | 3.5 | 3.62 | 3.44 | 3.6 | 0.013 | 1.50 | 1.0 | 0.11 | 8.96 | 0.01 | 2.417 | 1.03 | 0.39 | 2.1 | 97.7 | 0.1 | 0.78 | 0.70 | 0.73 | 3.93 | 3.6 | 0.003 | 0.65 | 0.0 | 0.05 | 12.69 | 0.00 | 2.195 | 7.49 | 0.39 | 3.5 | 96.5 | 0.0 | 0.35 | 0.60 | 0.72 | 0.76 | 3.65 | 10640 | 1522 | 18 | 0 | 24 | 0 | 0 | logfile |