Table showing results for November 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6F1Z	4172	2022-11-29	2017-11-23	3.4	4.16	—	3.4	0.004	0.97	0.0	0.06	11.17	0.01	2.264	12.14	0.81	8.6	91.4	0.0	-4.21	0.64	0.68	-1.41	3.4	0.004	1.01	0.0	0.05	16.44	0.01	2.105	24.74	0.81	7.8	92.2	0.0	-1.37	1.33	0.66	0.75	-0.09	2138	265	4	0	0	0	0	logfile
✔	7LC9	23270	2022-11-29	2021-01-10	3.2	3.25	—	3.1	0.004	0.72	0.0	0.05	17.46	0.00	1.884	31.60	18.58	13.4	86.6	0.0	-4.15	0.71	0.77	-0.84	3.1	0.009	0.92	0.0	0.05	16.86	0.00	1.984	46.70	2.65	14.8	85.2	0.0	-3.60	0.67	0.70	0.81	0.10	3497	525	12	0	0	0	0	logfile
✔	6RJU	4906	2022-11-29	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	10.0	0.003	0.66	0.0	0.03	16.23	0.00	2.422	6.03	0.00	3.9	96.1	0.0	-0.32	1.40	0.27	0.03	-0.67	1992	131	1	0	0	0	997	logfile
✔	7KU5	23034	2022-11-29	2020-11-24	3.76	3.63	—	3.9	0.006	1.29	0.0	0.07	14.85	0.01	2.420	3.63	0.00	12.8	87.2	0.0	-5.41	0.23	0.65	-0.48	3.9	0.002	0.73	0.0	0.04	16.42	0.01	2.247	10.16	0.00	10.5	89.5	0.0	-1.80	1.30	0.25	0.68	2.01	750	88	1	0	4	0	0	logfile
✔	6CU8	7619	2022-11-29	2018-03-23	3.6	3.65	—	4.2	0.004	0.73	0.0	0.06	7.75	0.00	2.412	6.41	0.00	5.1	94.9	0.0	-2.86	0.45	0.73	-0.16	4.2	0.005	0.79	0.0	0.06	12.89	0.00	2.161	16.36	0.65	15.9	84.1	0.0	-3.37	1.79	0.42	0.73	2.58	2880	410	10	0	0	0	0	logfile
✔	7VZF	32227	2022-11-29	2021-11-16	2.95	2.71	—	3.0	0.009	1.06	0.0	0.06	16.23	0.01	1.971	38.83	0.00	26.5	73.5	0.0	-5.56	0.30	0.43	-0.13	2.8	0.004	0.91	0.0	0.05	18.86	0.00	2.102	13.65	4.61	18.2	81.8	0.0	-4.30	1.96	0.37	0.63	0.33	2628	363	3	0	0	0	0	logfile
✔	7UHB	26511	2022-11-29	2022-03-26	3.0	3.17	2.97	3.2	0.011	1.35	3.0	0.12	9.86	0.00	2.562	5.08	1.42	3.0	96.6	0.4	-0.52	0.52	0.54	-0.09	3.1	0.004	0.63	0.0	0.04	16.50	0.00	2.265	9.19	2.84	4.1	95.9	0.0	0.51	2.44	0.71	0.84	3.45	2141	270	3	0	3	0	0	logfile
✔	6F1V	4170	2022-11-29	2017-11-23	3.4	4.10	—	3.7	0.014	1.86	0.0	0.09	11.72	0.01	2.246	13.29	0.18	11.1	88.7	0.2	-3.46	0.46	0.69	0.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5164	628	2	0	0	0	0	logfile
✔	6J5T	0680	2022-11-29	2019-01-12	3.4	3.94	—	3.0	0.009	1.20	0.0	0.07	11.49	0.01	1.182	7.10	0.59	11.3	88.4	0.3	-4.25	0.83	0.67	0.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	53488	6640	25	0	15	0	0	logfile
✔	7RTV	24690	2022-11-29	2021-08-15	3.96	4.06	—	4.1	0.003	0.68	0.0	0.04	16.49	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.004	0.87	0.0	0.04	18.39	0.00	2.192	15.77	0.00	2.5	97.5	0.0	3.10	0.49	0.42	0.64	-0.08	2881	366	3	0	6	0	0	logfile
✔	7F62	31470	2022-11-29	2021-06-24	3.6	4.33	—	4.1	0.003	0.65	0.0	0.04	13.21	0.00	1.925	19.89	1.38	8.1	91.6	0.2	-2.76	0.66	0.62	0.54	4.1	0.003	0.66	0.0	0.04	15.35	0.00	2.242	11.10	0.55	9.8	90.2	0.0	-1.83	1.44	0.69	0.77	1.00	3321	427	3	0	0	0	0	logfile
✔	6RiU	4898	2022-11-29	2019-04-25	3.9	6.21	2.04	7.0	0.008	1.19	0.0	0.09	15.19	0.01	2.182	5.20	0.00	8.4	91.6	0.0	-5.77	0.59	0.69	0.56	7.1	0.003	0.67	0.0	0.03	16.53	0.00	2.057	13.17	0.00	5.1	94.9	0.0	-0.39	1.43	0.61	0.75	1.30	2882	182	2	0	0	0	1430	logfile
✔	7S8U	24922	2022-11-29	2021-09-19	3.7	3.97	—	3.9	0.008	1.19	1.0	0.07	14.00	0.01	2.243	13.20	4.56	8.3	90.5	1.2	-1.14	0.48	0.59	0.59	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5210	667	1	0	0	0	0	logfile
✔	6Xi8	22191	2022-11-29	2020-06-19	3.64	2.63	3.78	2.0	0.010	1.69	4.0	0.11	15.14	0.01	1.333	6.79	0.77	9.0	91.0	0.0	-4.62	0.66	0.54	0.71	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5022	636	4	0	2	0	0	logfile
✔	7WX4	32876	2022-11-29	2022-02-14	3.4	3.64	2.77	3.7	0.006	0.59	0.0	0.04	16.46	0.00	2.219	8.20	6.39	7.2	92.8	0.0	-3.40	0.43	0.82	0.72	3.7	0.003	0.55	0.0	0.04	17.53	0.00	2.137	5.71	0.00	4.8	95.2	0.0	-0.17	0.47	0.41	0.81	0.60	1992	260	2	0	0	0	0	logfile
✔	6WFQ	21652	2022-11-29	2020-04-03	3.9	4.88	3.77	3.9	0.002	0.49	0.0	0.03	16.66	0.00	2.265	8.11	0.80	4.3	95.7	0.0	-2.49	0.84	0.78	0.76	3.8	0.004	0.87	0.0	0.04	19.04	0.00	2.205	19.35	0.80	6.5	93.5	0.0	-0.24	0.73	0.85	0.80	0.76	4164	447	4	30	0	0	0	logfile
✔	7PQG	13593	2022-11-29	2021-09-21	3.7	4.20	—	4.0	0.004	0.88	0.0	0.05	12.56	0.01	2.204	28.36	0.28	7.4	92.6	0.0	-0.87	0.56	0.76	0.82	4.1	0.004	1.16	0.0	0.06	15.70	0.01	2.134	33.34	0.56	6.7	93.3	0.0	-1.42	0.73	0.56	0.76	1.01	3251	423	2	0	0	0	0	logfile
✔	6ZQi	11364	2022-11-29	2020-07-09	3.8	4.13	3.63	4.1	0.002	0.56	0.0	0.04	12.40	0.00	2.336	6.43	1.12	3.1	96.9	0.0	-2.14	0.67	0.78	0.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5032	655	4	0	1	0	0	logfile
✘	8CTK	26993	2022-11-29	2022-05-15	3.52	3.87	3.55	3.9	0.003	0.69	0.0	0.05	14.37	0.00	2.347	4.53	0.00	3.8	96.2	0.0	-1.07	0.54	0.70	0.86	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3042	376	2	0	0	0	0	logfile
✔	7BC5	12139	2022-11-29	2020-12-18	3.1	3.06	3.11	3.1	0.005	1.05	0.0	0.05	15.92	0.01	2.314	7.83	0.76	8.2	91.8	0.0	-5.64	0.23	0.62	0.92	3.0	0.002	0.69	0.0	0.04	16.82	0.00	2.275	14.00	0.76	6.9	93.1	0.0	-2.62	1.28	0.23	0.57	0.92	1200	161	1	0	0	0	0	logfile

• Page 1 of 23
• next →