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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6F1Z | 4172 | 2022-07-02 | 2017-11-23 | 3.4 | 4.16 | — | 3.4 | 0.004 | 0.97 | 0.0 | 0.06 | 11.17 | 0.01 | 2.264 | 12.14 | 0.81 | 8.6 | 91.4 | 0.0 | -4.21 | 0.64 | 0.68 | -1.41 | 3.4 | 0.004 | 1.01 | 0.0 | 0.05 | 16.44 | 0.01 | 2.105 | 24.74 | 0.81 | 7.8 | 92.2 | 0.0 | -1.37 | 1.33 | 0.66 | 0.75 | -0.09 | 2138 | 265 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7o3Y | 12712 | 2022-07-11 | 2021-04-03 | 3.8 | 5.36 | 4.02 | 6.6 | 0.017 | 1.23 | 0.0 | 0.07 | 17.45 | 0.01 | 1.232 | 13.83 | 1.39 | 2.3 | 97.7 | 0.0 | 2.03 | 0.56 | 0.43 | -1.05 | 6.8 | 0.013 | 1.37 | 7.0 | 0.06 | 19.49 | 0.01 | 1.502 | 56.31 | 1.27 | 1.6 | 98.3 | 0.0 | 2.15 | 2.03 | 0.77 | 0.84 | -0.25 | 158288 | 20576 | 112 | 0 | 16 | 0 | 0 | logfile |
✔ | 7LC9 | 23270 | 2022-07-03 | 2021-01-10 | 3.2 | 3.25 | — | 3.1 | 0.004 | 0.72 | 0.0 | 0.05 | 17.46 | 0.00 | 1.884 | 31.60 | 18.58 | 13.4 | 86.6 | 0.0 | -4.15 | 0.71 | 0.77 | -0.84 | 3.1 | 0.009 | 0.92 | 0.0 | 0.05 | 16.86 | 0.00 | 1.984 | 46.70 | 2.65 | 14.8 | 85.2 | 0.0 | -3.60 | 0.67 | 0.70 | 0.81 | 0.10 | 3497 | 525 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 7oJH | 12951 | 2022-07-03 | 2021-05-15 | 3.1 | 2.57 | 4.80 | 20.0 | 0.011 | 0.90 | 0.0 | 0.05 | 11.01 | 0.00 | 2.239 | 2.98 | 0.52 | 2.9 | 97.1 | 0.0 | 0.37 | 0.00 | 0.00 | -0.81 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8999 | 1138 | 4 | 0 | 5 | 0 | 0 | logfile |
✔ | 6RJU | 4906 | 2022-07-02 | 2019-04-29 | 3.2 | 4.49 | 2.14 | 10.0 | 0.007 | 0.93 | 0.0 | 0.05 | 15.36 | 0.00 | 2.423 | 4.52 | 0.00 | 11.6 | 88.4 | 0.0 | -7.10 | 0.22 | -0.01 | -0.80 | 10.0 | 0.003 | 0.66 | 0.0 | 0.03 | 16.23 | 0.00 | 2.422 | 6.03 | 0.00 | 3.9 | 96.1 | 0.0 | -0.32 | 1.40 | 0.27 | 0.03 | -0.67 | 1992 | 131 | 1 | 0 | 0 | 0 | 997 | logfile |
✔ | 7N8N | 24238 | 2022-07-03 | 2021-06-15 | 3.89 | 5.26 | — | 4.4 | 0.006 | 0.85 | 0.0 | 0.04 | 28.11 | 0.01 | 2.035 | 27.71 | 0.00 | 9.6 | 90.4 | 0.0 | -1.71 | 0.87 | 0.78 | -0.56 | 4.4 | 0.005 | 0.76 | 0.0 | 0.04 | 28.92 | 0.01 | 2.088 | 26.08 | 0.93 | 8.1 | 91.6 | 0.3 | -0.94 | 0.74 | 0.88 | 0.81 | -0.33 | 11121 | 798 | 6 | 250 | 0 | 0 | 0 | logfile |
✔ | 7KU5 | 23034 | 2022-07-02 | 2020-11-24 | 3.76 | 3.63 | — | 3.9 | 0.006 | 1.29 | 0.0 | 0.07 | 14.85 | 0.01 | 2.420 | 3.63 | 0.00 | 12.8 | 87.2 | 0.0 | -5.41 | 0.23 | 0.65 | -0.48 | 3.9 | 0.038 | 3.67 | 0.0 | 0.08 | 18.32 | 0.01 | 2.079 | 18.87 | 0.00 | 11.6 | 88.4 | 0.0 | -1.92 | 1.16 | 0.25 | 0.69 | 2.46 | 750 | 88 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 7o3X | 12711 | 2022-07-08 | 2021-04-03 | 3.9 | 4.85 | 4.22 | 6.5 | 0.017 | 1.96 | 0.0 | 0.11 | 18.05 | 0.01 | 0.321 | 15.91 | 1.39 | 1.6 | 97.8 | 0.6 | 2.94 | 0.58 | 0.46 | -0.41 | 6.7 | 0.005 | 1.18 | 0.0 | 0.05 | 19.84 | 0.01 | 1.938 | 33.55 | 1.00 | 1.9 | 98.0 | 0.1 | 1.55 | 2.43 | 0.76 | 0.84 | 0.06 | 148395 | 19290 | 105 | 0 | 15 | 0 | 0 | logfile |
✔ | 6M17 | 30039 | 2022-07-05 | 2020-02-24 | 2.9 | 3.19 | — | 3.4 | 0.008 | 1.09 | 0.0 | 0.08 | 14.60 | 0.01 | 1.884 | 8.48 | 1.85 | 8.7 | 89.7 | 1.6 | -6.10 | 0.46 | 0.38 | -0.35 | 3.2 | 0.004 | 0.88 | 0.0 | 0.05 | 17.30 | 0.01 | 2.057 | 11.16 | 2.85 | 5.8 | 94.1 | 0.1 | -1.10 | 1.09 | 0.66 | 0.82 | 1.80 | 25344 | 3074 | 14 | 0 | 46 | 8 | 0 | logfile |
✔ | 5VA2 | 8651 | 2022-07-04 | 2017-03-24 | 3.8 | 5.28 | — | 4.3 | 0.008 | 1.08 | 0.0 | 0.06 | 12.47 | 0.00 | 1.607 | 11.52 | 1.08 | 7.7 | 90.7 | 1.6 | -3.86 | 0.64 | 0.74 | -0.32 | 4.3 | 0.004 | 0.99 | 0.0 | 0.05 | 16.12 | 0.00 | 2.063 | 25.77 | 0.27 | 5.1 | 94.6 | 0.4 | -1.40 | 2.67 | 0.67 | 0.83 | 0.07 | 17576 | 2232 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7FG3 | 31577 | 2022-07-03 | 2021-07-25 | 3.9 | 3.62 | — | 4.0 | 0.006 | 1.13 | 0.0 | 0.06 | 14.47 | 0.01 | 1.929 | 37.34 | 0.00 | 18.5 | 80.8 | 0.7 | -4.60 | 0.22 | 0.47 | -0.27 | 4.0 | 0.009 | 0.98 | 0.0 | 0.05 | 16.79 | 0.01 | 2.094 | 24.09 | 0.30 | 15.7 | 83.7 | 0.6 | -3.71 | 0.78 | 0.23 | 0.45 | 0.29 | 9054 | 1166 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6TZ5 | 20589 | 2022-07-06 | 2019-08-10 | 3.1 | 3.56 | 3.05 | 3.7 | 0.003 | 0.51 | 0.0 | 0.04 | 14.11 | 0.00 | 2.220 | 7.23 | 0.00 | 1.1 | 98.9 | 0.0 | 0.24 | 0.40 | 0.55 | -0.21 | 3.4 | 0.004 | 0.80 | 0.0 | 0.04 | 18.74 | 0.01 | 2.059 | 14.56 | 0.91 | 1.5 | 98.5 | 0.0 | 3.23 | 1.51 | 0.50 | 0.84 | 0.86 | 93500 | 12104 | 68 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oLE | 12979 | 2022-07-05 | 2021-05-19 | 3.41 | 4.34 | 3.59 | 3.9 | 0.013 | 1.74 | 25.0 | 0.10 | 15.12 | 0.01 | 1.371 | 42.23 | 0.38 | 17.2 | 81.9 | 0.8 | -5.68 | 0.55 | 0.26 | -0.19 | 3.6 | 0.010 | 1.10 | 1.0 | 0.04 | 16.15 | 0.00 | 1.615 | 22.77 | 0.10 | 10.2 | 89.6 | 0.2 | -2.21 | 1.45 | 0.77 | 0.74 | 0.57 | 26995 | 2899 | 14 | 0 | 1129 | 0 | 0 | logfile |
✔ | 6GEN | 4396 | 2022-07-07 | 2018-04-27 | 3.6 | 4.67 | — | 4.5 | 0.004 | 0.75 | 0.0 | 0.04 | 20.46 | 0.01 | 2.109 | 5.91 | 8.77 | 3.9 | 96.0 | 0.0 | -4.51 | 0.78 | 0.58 | -0.18 | 4.4 | 0.003 | 0.76 | 0.0 | 0.04 | 21.34 | 0.00 | 1.014 | 16.32 | 0.38 | 4.7 | 95.3 | 0.0 | -0.45 | 2.07 | 0.84 | 0.74 | 0.08 | 44481 | 4683 | 29 | 346 | 151 | 0 | 0 | logfile |
✔ | 7RYE | 24735 | 2022-07-04 | 2021-08-25 | 3.9 | 4.10 | — | 4.0 | 0.003 | 0.65 | 0.0 | 0.04 | 14.57 | 0.00 | 2.090 | 14.13 | 0.00 | 3.7 | 96.3 | 0.0 | 1.07 | 0.76 | 0.69 | -0.18 | 4.0 | 0.004 | 0.77 | 0.0 | 0.04 | 17.72 | 0.01 | 2.110 | 15.54 | 0.56 | 4.1 | 95.9 | 0.0 | 1.33 | 1.08 | 0.81 | 0.79 | 0.33 | 19708 | 2535 | 24 | 0 | 0 | 0 | 0 | logfile |
✔ | 6CU8 | 7619 | 2022-07-02 | 2018-03-23 | 3.6 | 3.65 | — | 4.2 | 0.004 | 0.73 | 0.0 | 0.06 | 7.75 | 0.00 | 2.412 | 6.41 | 0.00 | 5.1 | 94.9 | 0.0 | -2.86 | 0.45 | 0.73 | -0.16 | 4.2 | 0.005 | 0.79 | 0.0 | 0.06 | 12.89 | 0.00 | 2.161 | 16.36 | 0.65 | 15.9 | 84.1 | 0.0 | -3.37 | 1.79 | 0.42 | 0.73 | 2.58 | 2880 | 410 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 7oCK | 12809 | 2022-07-05 | 2021-04-27 | 3.6 | 5.02 | — | 8.3 | 0.008 | 0.86 | 0.0 | 0.05 | 14.98 | 0.01 | 1.988 | 36.55 | 0.20 | 7.7 | 92.1 | 0.2 | -2.93 | 0.80 | 0.41 | -0.16 | 5.6 | 0.008 | 1.16 | 0.0 | 0.05 | 16.93 | 0.01 | 1.998 | 42.78 | 0.47 | 6.0 | 93.8 | 0.1 | -1.34 | 1.33 | 0.86 | 0.62 | 0.03 | 28276 | 3666 | 12 | 0 | 0 | 0 | 0 | logfile |
✘ | 7KU7 | 23035 | 2022-07-04 | 2020-11-24 | 3.4 | 3.80 | 3.67 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 17.91 | 0.01 | 1.220 | 20.05 | 0.00 | 7.4 | 92.6 | 0.0 | -1.44 | 0.70 | 0.65 | -0.15 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15666 | 1807 | 16 | 68 | 8 | 0 | 0 | logfile |
✔ | 7PC2 | 13316 | 2022-07-05 | 2021-08-03 | 2.8 | 3.39 | — | 6.5 | 0.033 | 1.53 | 5.0 | 0.05 | 15.16 | 0.01 | 1.809 | 9.01 | 1.49 | 7.8 | 92.2 | 0.0 | -3.81 | 0.43 | 0.05 | -0.14 | 2.9 | 0.014 | 1.28 | 3.0 | 0.05 | 16.66 | 0.01 | 1.526 | 28.54 | 2.98 | 8.1 | 91.9 | 0.0 | -1.71 | 1.41 | 0.57 | 0.35 | 0.46 | 27063 | 3093 | 68 | 0 | 210 | 0 | 0 | logfile |
✔ | 7LJ3 | 23388 | 2022-07-05 | 2021-01-28 | 2.9 | 2.92 | — | 3.4 | 0.005 | 0.72 | 0.0 | 0.04 | 17.12 | 0.00 | 1.041 | 27.61 | 3.30 | 3.6 | 96.0 | 0.4 | 0.29 | 0.10 | 0.23 | -0.14 | 2.9 | 0.010 | 0.89 | 0.0 | 0.03 | 19.65 | 0.01 | 1.899 | 9.15 | 4.21 | 5.0 | 94.9 | 0.2 | 2.05 | 1.40 | 0.22 | 0.78 | 1.86 | 25714 | 2564 | 12 | 225 | 0 | 0 | 0 | logfile |