Table showing results for May 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6F1Z	4172	2021-05-03	2017-11-23	3.4	4.16	—	3.4	0.004	0.97	0.0	0.06	11.17	0.01	2.264	11.67	0.81	8.6	91.4	0.0	-4.21	0.64	0.68	-1.41	3.3	0.004	0.93	0.0	0.05	16.84	0.00	2.060	28.70	0.81	7.8	92.2	0.0	-1.75	1.42	0.67	0.77	-0.90	2138	265	4	0	0	0	0	logfile
✔	6RJU	4906	2021-05-03	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	3.6	0.003	0.67	0.0	0.03	16.11	0.00	2.231	7.54	0.00	7.8	92.2	0.0	-1.37	1.76	0.29	0.09	-2.78	1992	131	1	0	0	0	997	logfile
✔	6M17	30039	2021-05-05	2020-02-24	2.9	3.19	—	3.4	0.008	1.09	0.0	0.08	14.60	0.01	1.884	8.24	1.85	8.7	89.7	1.6	-6.10	0.46	0.38	-0.35	3.2	0.004	0.84	0.0	0.05	17.41	0.01	2.075	9.92	2.37	6.4	93.5	0.1	-1.11	1.50	0.67	0.82	2.04	25344	3074	14	0	46	8	0	logfile
✔	5VA2	8651	2021-05-04	2017-03-24	3.8	5.28	—	4.3	0.008	1.08	0.0	0.06	12.47	0.00	1.607	11.07	1.08	7.7	90.7	1.6	-3.86	0.64	0.73	-0.32	4.3	0.004	1.01	0.0	0.05	16.25	0.00	2.061	24.86	0.27	4.5	95.1	0.5	-1.14	1.99	0.67	0.83	0.06	17576	2232	4	0	0	0	0	logfile
✔	6TZ5	20589	2021-05-05	2019-08-10	3.1	3.56	3.05	3.7	0.003	0.51	0.0	0.04	14.11	0.00	2.220	7.23	0.00	1.1	98.9	0.0	0.24	0.40	0.55	-0.21	3.4	0.004	0.79	0.0	0.04	18.84	0.01	2.036	13.21	0.95	1.4	98.6	0.0	3.44	2.47	0.50	0.83	0.87	93500	12104	68	0	0	0	0	logfile
✔	6GEN	4396	2021-05-06	2018-04-27	3.6	4.67	—	4.5	0.003	0.75	0.0	0.04	20.46	0.01	2.109	5.88	8.77	3.9	96.0	0.0	-4.51	0.78	0.59	-0.18	4.5	0.003	0.76	0.0	0.04	21.33	0.00	1.038	19.00	0.35	5.2	94.8	0.0	-0.55	1.96	0.85	0.76	0.25	44481	4683	29	346	151	0	0	logfile
✔	6CU8	7619	2021-05-03	2018-03-23	3.6	3.65	—	4.2	0.004	0.73	0.0	0.06	7.75	0.00	2.412	6.41	0.00	5.1	94.9	0.0	-2.86	0.45	0.73	-0.16	4.3	0.004	0.74	0.0	0.05	13.99	0.00	2.169	14.33	0.65	12.1	87.9	0.0	-3.10	2.57	0.43	0.74	1.83	2880	410	10	0	0	0	0	logfile
✔	7KU7	23035	2021-05-04	2020-11-24	3.4	3.80	3.68	3.7	0.007	0.98	0.0	0.04	18.06	0.01	1.912	19.30	0.00	7.4	92.6	0.0	-1.44	0.70	0.65	-0.15	3.6	0.004	0.71	0.0	0.04	19.44	0.01	1.917	16.75	0.27	6.1	93.9	0.0	-0.96	1.10	0.77	0.82	1.65	15666	1807	16	68	8	0	0	logfile
✔	6UMM	20820	2021-05-05	2019-10-09	3.7	6.74	4.15	4.0	0.006	0.79	0.0	0.04	13.23	0.00	2.203	11.69	0.17	4.8	95.2	0.0	-2.07	0.55	0.56	-0.10	4.1	0.004	0.92	0.0	0.05	14.32	0.00	2.076	22.83	0.17	3.8	96.2	0.0	0.96	1.25	0.62	0.82	0.22	23658	3184	10	0	0	0	0	logfile
✔	6SSJ	10295	2021-05-05	2019-09-08	2.75	3.13	—	3.2	0.016	1.25	0.0	0.08	12.91	0.01	1.227	9.08	0.54	3.2	96.8	0.0	-4.66	0.49	0.47	-0.09	3.1	0.003	0.67	0.0	0.04	17.43	0.01	2.147	6.61	1.16	2.7	97.3	0.0	0.26	2.12	0.71	0.83	2.31	104100	13320	60	0	0	0	0	logfile
✘	5G2X	3331	2021-05-04	2016-04-16	3.8	3.49	—	3.4	0.001	0.32	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	19072	487	3	704	0	0	0	logfile
✔	6U0M	20607	2021-05-06	2019-08-14	3.9	4.53	—	4.3	0.005	1.05	2.0	0.06	16.74	0.01	2.211	9.80	0.47	13.2	86.7	0.2	-5.28	0.81	0.63	-0.08	4.3	0.003	0.80	0.0	0.04	17.35	0.00	2.104	12.06	0.25	8.0	92.0	0.0	-2.49	1.85	0.87	0.77	0.29	41146	5105	16	34	3	0	0	logfile
✔	6JCT	9797	2021-05-16	2019-01-30	3.18	3.30	—	3.4	0.008	1.08	0.0	0.06	10.16	0.01	0.594	62.26	0.44	7.2	92.6	0.2	-3.86	0.51	0.40	-0.08	3.2	0.004	0.65	0.0	0.04	15.39	0.01	2.067	13.08	0.41	6.4	93.6	0.0	-1.65	1.92	0.82	0.88	3.67	246660	30960	60	0	0	0	0	logfile
✔	5US7	8604	2021-05-16	2017-02-13	2.8	3.07	—	3.9	0.010	1.15	0.0	0.07	10.63	0.01	1.998	25.45	0.00	15.6	82.1	2.4	-3.94	0.36	0.29	-0.07	3.0	0.006	1.05	0.0	0.06	16.92	0.01	1.965	20.33	2.54	15.4	82.5	2.0	-2.62	1.92	0.72	0.85	3.84	242340	30360	60	0	0	0	0	logfile
✔	6KKR	0701	2021-05-03	2019-07-27	2.9	2.91	—	20.0	0.008	1.10	0.0	0.06	10.85	0.01	2.348	3.23	0.23	3.9	96.1	0.0	-3.53	0.05	0.00	-0.07	2.8	0.003	0.70	0.0	0.04	12.46	0.00	2.166	9.75	1.70	3.5	96.5	0.0	0.80	1.66	0.11	0.10	0.21	8416	1074	4	0	24	0	0	logfile
✔	5MPP	3538	2021-05-03	2016-12-17	3.9	4.03	—	4.1	0.009	1.02	0.0	0.06	14.77	0.01	2.456	7.21	5.00	5.3	94.7	0.0	-3.86	0.58	0.49	-0.06	4.0	0.004	0.76	0.0	0.05	17.72	0.01	2.077	13.46	0.96	4.3	95.7	0.0	0.28	4.02	0.82	0.88	0.66	70560	9240	60	0	0	0	0	logfile
✔	6SXA	10337	2021-05-03	2019-09-25	3.6	5.82	4.21	4.6	0.010	1.37	5.0	0.09	15.20	0.01	2.245	14.89	3.18	10.9	88.9	0.2	-4.66	0.83	0.67	-0.05	4.6	0.003	0.79	0.0	0.04	15.15	0.00	2.262	10.66	0.00	5.1	94.7	0.1	0.14	1.10	0.91	0.85	-0.48	7014	943	2	0	0	0	0	logfile
✔	5LKH	4068	2021-05-06	2016-07-22	3.46	5.27	—	11.0	0.018	2.37	65.0	0.12	12.66	0.02	2.255	85.51	1.96	3.4	95.2	1.4	-0.27	0.38	0.17	-0.03	4.4	0.005	0.85	0.0	0.04	15.69	0.01	2.053	28.37	0.17	6.8	93.2	0.0	-0.70	2.41	0.49	0.48	0.22	37345	4740	5	0	0	0	0	logfile
✔	5VZL	8749	2021-05-04	2017-05-29	3.9	4.38	—	19.0	0.006	0.96	0.0	0.05	14.28	0.01	2.216	7.72	0.25	8.4	91.6	0.0	-4.13	0.31	0.03	-0.03	4.3	0.005	0.84	0.0	0.04	16.49	0.01	1.269	19.59	1.00	9.1	90.9	0.0	-2.29	2.41	0.44	0.26	0.28	13915	1451	3	115	1	0	0	logfile
✔	6JCR	9795	2021-05-16	2019-01-30	3.07	3.19	—	3.6	0.009	1.12	0.0	0.06	10.94	0.01	0.548	52.93	0.44	6.4	93.6	0.0	-3.60	0.44	0.29	-0.03	3.1	0.005	0.68	0.0	0.04	15.58	0.00	2.092	12.85	0.26	5.3	94.7	0.0	-1.77	1.42	0.83	0.89	4.10	246720	31080	60	0	0	0	0	logfile

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