Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6F1Z	4172	2022-07-02	2017-11-23	3.4	4.16	—	3.4	0.004	0.97	0.0	0.06	11.17	0.01	2.264	12.14	0.81	8.6	91.4	0.0	-4.21	0.64	0.68	-1.41	3.4	0.004	1.01	0.0	0.05	16.44	0.01	2.105	24.74	0.81	7.8	92.2	0.0	-1.37	1.33	0.66	0.75	-0.09	2138	265	4	0	0	0	0	logfile
✔	7o3Y	12712	2022-07-11	2021-04-03	3.8	5.36	4.02	6.6	0.017	1.23	0.0	0.07	17.45	0.01	1.232	13.83	1.39	2.3	97.7	0.0	2.03	0.56	0.43	-1.05	6.8	0.013	1.37	7.0	0.06	19.49	0.01	1.502	56.31	1.27	1.6	98.3	0.0	2.15	2.03	0.77	0.84	-0.25	158288	20576	112	0	16	0	0	logfile
✔	7LC9	23270	2022-07-03	2021-01-10	3.2	3.25	—	3.1	0.004	0.72	0.0	0.05	17.46	0.00	1.884	31.60	18.58	13.4	86.6	0.0	-4.15	0.71	0.77	-0.84	3.1	0.009	0.92	0.0	0.05	16.86	0.00	1.984	46.70	2.65	14.8	85.2	0.0	-3.60	0.67	0.70	0.81	0.10	3497	525	12	0	0	0	0	logfile
✘	7oJH	12951	2022-07-03	2021-05-15	3.1	2.57	4.80	20.0	0.011	0.90	0.0	0.05	11.01	0.00	2.239	2.98	0.52	2.9	97.1	0.0	0.37	0.00	0.00	-0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8999	1138	4	0	5	0	0	logfile
✔	6RJU	4906	2022-07-02	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	10.0	0.003	0.66	0.0	0.03	16.23	0.00	2.422	6.03	0.00	3.9	96.1	0.0	-0.32	1.40	0.27	0.03	-0.67	1992	131	1	0	0	0	997	logfile
✔	7N8N	24238	2022-07-03	2021-06-15	3.89	5.26	—	4.4	0.006	0.85	0.0	0.04	28.11	0.01	2.035	27.71	0.00	9.6	90.4	0.0	-1.71	0.87	0.78	-0.56	4.4	0.005	0.76	0.0	0.04	28.92	0.01	2.088	26.08	0.93	8.1	91.6	0.3	-0.94	0.74	0.88	0.81	-0.33	11121	798	6	250	0	0	0	logfile
✔	7KU5	23034	2022-07-02	2020-11-24	3.76	3.63	—	3.9	0.006	1.29	0.0	0.07	14.85	0.01	2.420	3.63	0.00	12.8	87.2	0.0	-5.41	0.23	0.65	-0.48	3.9	0.038	3.67	0.0	0.08	18.32	0.01	2.079	18.87	0.00	11.6	88.4	0.0	-1.92	1.16	0.25	0.69	2.46	750	88	1	0	4	0	0	logfile
✔	7o3X	12711	2022-07-08	2021-04-03	3.9	4.85	4.22	6.5	0.017	1.96	0.0	0.11	18.05	0.01	0.321	15.91	1.39	1.6	97.8	0.6	2.94	0.58	0.46	-0.41	6.7	0.005	1.18	0.0	0.05	19.84	0.01	1.938	33.55	1.00	1.9	98.0	0.1	1.55	2.43	0.76	0.84	0.06	148395	19290	105	0	15	0	0	logfile
✔	6M17	30039	2022-07-05	2020-02-24	2.9	3.19	—	3.4	0.008	1.09	0.0	0.08	14.60	0.01	1.884	8.48	1.85	8.7	89.7	1.6	-6.10	0.46	0.38	-0.35	3.2	0.004	0.88	0.0	0.05	17.30	0.01	2.057	11.16	2.85	5.8	94.1	0.1	-1.10	1.09	0.66	0.82	1.80	25344	3074	14	0	46	8	0	logfile
✔	5VA2	8651	2022-07-04	2017-03-24	3.8	5.28	—	4.3	0.008	1.08	0.0	0.06	12.47	0.00	1.607	11.52	1.08	7.7	90.7	1.6	-3.86	0.64	0.74	-0.32	4.3	0.004	0.99	0.0	0.05	16.12	0.00	2.063	25.77	0.27	5.1	94.6	0.4	-1.40	2.67	0.67	0.83	0.07	17576	2232	4	0	0	0	0	logfile
✔	7FG3	31577	2022-07-03	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.34	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.009	0.98	0.0	0.05	16.79	0.01	2.094	24.09	0.30	15.7	83.7	0.6	-3.71	0.78	0.23	0.45	0.29	9054	1166	2	0	0	0	0	logfile
✔	6TZ5	20589	2022-07-06	2019-08-10	3.1	3.56	3.05	3.7	0.003	0.51	0.0	0.04	14.11	0.00	2.220	7.23	0.00	1.1	98.9	0.0	0.24	0.40	0.55	-0.21	3.4	0.004	0.80	0.0	0.04	18.74	0.01	2.059	14.56	0.91	1.5	98.5	0.0	3.23	1.51	0.50	0.84	0.86	93500	12104	68	0	0	0	0	logfile
✔	7oLE	12979	2022-07-05	2021-05-19	3.41	4.34	3.59	3.9	0.013	1.74	25.0	0.10	15.12	0.01	1.371	42.23	0.38	17.2	81.9	0.8	-5.68	0.55	0.26	-0.19	3.6	0.010	1.10	1.0	0.04	16.15	0.00	1.615	22.77	0.10	10.2	89.6	0.2	-2.21	1.45	0.77	0.74	0.57	26995	2899	14	0	1129	0	0	logfile
✔	6GEN	4396	2022-07-07	2018-04-27	3.6	4.67	—	4.5	0.004	0.75	0.0	0.04	20.46	0.01	2.109	5.91	8.77	3.9	96.0	0.0	-4.51	0.78	0.58	-0.18	4.4	0.003	0.76	0.0	0.04	21.34	0.00	1.014	16.32	0.38	4.7	95.3	0.0	-0.45	2.07	0.84	0.74	0.08	44481	4683	29	346	151	0	0	logfile
✔	7RYE	24735	2022-07-04	2021-08-25	3.9	4.10	—	4.0	0.003	0.65	0.0	0.04	14.57	0.00	2.090	14.13	0.00	3.7	96.3	0.0	1.07	0.76	0.69	-0.18	4.0	0.004	0.77	0.0	0.04	17.72	0.01	2.110	15.54	0.56	4.1	95.9	0.0	1.33	1.08	0.81	0.79	0.33	19708	2535	24	0	0	0	0	logfile
✔	6CU8	7619	2022-07-02	2018-03-23	3.6	3.65	—	4.2	0.004	0.73	0.0	0.06	7.75	0.00	2.412	6.41	0.00	5.1	94.9	0.0	-2.86	0.45	0.73	-0.16	4.2	0.005	0.79	0.0	0.06	12.89	0.00	2.161	16.36	0.65	15.9	84.1	0.0	-3.37	1.79	0.42	0.73	2.58	2880	410	10	0	0	0	0	logfile
✔	7oCK	12809	2022-07-05	2021-04-27	3.6	5.02	—	8.3	0.008	0.86	0.0	0.05	14.98	0.01	1.988	36.55	0.20	7.7	92.1	0.2	-2.93	0.80	0.41	-0.16	5.6	0.008	1.16	0.0	0.05	16.93	0.01	1.998	42.78	0.47	6.0	93.8	0.1	-1.34	1.33	0.86	0.62	0.03	28276	3666	12	0	0	0	0	logfile
✘	7KU7	23035	2022-07-04	2020-11-24	3.4	3.80	3.67	3.7	0.003	0.64	0.0	0.04	17.91	0.01	1.220	20.05	0.00	7.4	92.6	0.0	-1.44	0.70	0.65	-0.15	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15666	1807	16	68	8	0	0	logfile
✔	7PC2	13316	2022-07-05	2021-08-03	2.8	3.39	—	6.5	0.033	1.53	5.0	0.05	15.16	0.01	1.809	9.01	1.49	7.8	92.2	0.0	-3.81	0.43	0.05	-0.14	2.9	0.014	1.28	3.0	0.05	16.66	0.01	1.526	28.54	2.98	8.1	91.9	0.0	-1.71	1.41	0.57	0.35	0.46	27063	3093	68	0	210	0	0	logfile
✔	7LJ3	23388	2022-07-05	2021-01-28	2.9	2.92	—	3.4	0.005	0.72	0.0	0.04	17.12	0.00	1.041	27.61	3.30	3.6	96.0	0.4	0.29	0.10	0.23	-0.14	2.9	0.010	0.89	0.0	0.03	19.65	0.01	1.899	9.15	4.21	5.0	94.9	0.2	2.05	1.40	0.22	0.78	1.86	25714	2564	12	225	0	0	0	logfile

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