Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6F1Z	4172	2021-08-07	2017-11-23	3.4	4.16	—	3.4	0.004	0.97	0.0	0.06	11.17	0.01	2.264	11.67	0.81	8.6	91.4	0.0	-4.21	0.64	0.68	-1.41	3.5	0.004	0.96	0.0	0.05	16.51	0.01	2.074	30.11	0.00	8.6	91.4	0.0	-1.36	1.85	0.67	0.77	-0.13	2138	265	4	0	0	0	0	logfile
✔	7o3Y	12712	2021-08-18	2021-04-03	3.8	5.36	4.02	6.6	0.017	1.23	0.0	0.07	17.45	0.01	1.232	13.58	1.39	2.3	97.7	0.0	2.03	0.56	0.44	-1.05	6.6	0.011	1.29	15.0	0.05	19.26	0.01	1.596	54.50	1.27	1.6	98.3	0.1	2.18	2.04	0.77	0.84	0.19	158288	20576	112	0	16	0	0	logfile
✘	7oJH	12951	2021-08-07	2021-05-15	3.1	2.57	4.81	20.0	0.016	1.03	0.0	0.29	10.92	0.00	2.239	2.98	0.52	2.9	97.1	0.0	0.37	0.00	0.00	-0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8999	1138	4	0	5	0	0	logfile
✔	6RJU	4906	2021-08-07	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	3.6	0.003	0.75	0.0	0.03	15.88	0.00	2.161	10.56	0.00	9.3	90.7	0.0	-1.56	1.74	0.30	0.08	-2.69	1992	131	1	0	0	0	997	logfile
✔	7N8N	24238	2021-08-08	2021-06-15	3.89	5.26	—	4.4	0.006	0.85	0.0	0.04	28.11	0.01	2.035	27.26	0.00	9.6	90.4	0.0	-1.71	0.87	0.78	-0.56	4.4	0.005	0.77	0.0	0.04	29.16	0.01	2.108	26.03	0.62	7.3	92.4	0.3	-0.61	0.86	0.88	0.80	-0.33	11121	798	6	250	0	0	0	logfile
✔	7o3X	12711	2021-08-15	2021-04-03	3.9	4.85	4.22	6.5	0.017	1.96	0.0	0.11	18.05	0.01	0.321	15.44	1.39	1.6	97.8	0.6	2.94	0.58	0.46	-0.41	6.7	0.005	1.19	0.0	0.05	19.65	0.01	2.045	31.17	0.72	1.7	98.2	0.1	1.55	2.48	0.76	0.84	-0.07	148395	19290	105	0	15	0	0	logfile
✔	6M17	30039	2021-08-09	2020-02-24	2.9	3.19	—	3.4	0.008	1.09	0.0	0.08	14.60	0.01	1.884	8.24	1.85	8.7	89.7	1.6	-6.10	0.46	0.38	-0.35	3.2	0.004	0.80	0.0	0.05	17.26	0.01	2.058	10.52	2.66	6.2	93.6	0.1	-0.83	1.47	0.69	0.84	1.97	25344	3074	14	0	46	8	0	logfile
✔	5VA2	8651	2021-08-08	2017-03-24	3.8	5.28	—	4.3	0.008	1.08	0.0	0.06	12.47	0.00	1.607	11.07	1.08	7.7	90.7	1.6	-3.86	0.64	0.73	-0.32	4.3	0.004	0.94	0.0	0.05	16.06	0.00	2.119	22.30	0.27	4.7	94.8	0.5	-1.05	2.67	0.67	0.83	0.00	17576	2232	4	0	0	0	0	logfile
✔	6TZ5	20589	2021-08-12	2019-08-10	3.1	3.56	3.05	3.7	0.003	0.51	0.0	0.04	14.11	0.00	2.220	7.23	0.00	1.1	98.9	0.0	0.24	0.40	0.55	-0.21	3.4	0.004	0.76	0.0	0.04	18.76	0.01	2.079	12.98	0.77	1.2	98.8	0.0	3.59	2.47	0.50	0.84	0.76	93500	12104	68	0	0	0	0	logfile
✔	7oLE	12979	2021-08-09	2021-05-19	3.41	4.34	3.59	3.9	0.013	1.74	25.0	0.10	15.12	0.01	1.371	40.96	0.38	17.2	81.9	0.8	-5.68	0.55	0.26	-0.19	3.6	0.007	0.98	0.0	0.04	15.91	0.01	2.134	21.14	0.10	10.4	89.3	0.3	-1.83	1.99	0.76	0.75	0.82	26995	2899	14	0	1129	0	0	logfile
✔	6GEN	4396	2021-08-11	2018-04-27	3.6	4.67	—	4.5	0.003	0.75	0.0	0.04	20.46	0.01	2.109	5.88	8.77	3.9	96.0	0.0	-4.51	0.78	0.59	-0.18	4.5	0.004	0.78	0.0	0.04	21.26	0.00	1.056	16.48	0.28	4.9	95.1	0.0	-0.55	1.49	0.85	0.75	0.19	44481	4683	29	346	151	0	0	logfile
✔	7oCK	12809	2021-08-10	2021-04-27	3.6	5.02	—	8.3	0.008	0.86	0.0	0.05	14.98	0.01	1.988	35.23	0.20	7.7	92.1	0.2	-2.93	0.80	0.41	-0.16	5.0	0.007	1.00	0.0	0.05	16.93	0.01	1.525	35.37	0.17	5.5	94.4	0.1	-0.77	1.70	0.88	0.68	-0.13	28276	3666	12	0	0	0	0	logfile
✔	6CU8	7619	2021-08-07	2018-03-23	3.6	3.65	—	4.2	0.004	0.73	0.0	0.06	7.75	0.00	2.412	6.41	0.00	5.1	94.9	0.0	-2.86	0.45	0.73	-0.16	4.3	0.005	0.79	0.0	0.06	12.77	0.00	2.126	17.71	0.97	19.2	80.8	0.0	-3.55	2.57	0.44	0.74	2.25	2880	410	10	0	0	0	0	logfile
✔	7KU7	23035	2021-08-08	2020-11-24	3.4	3.80	3.67	3.7	0.007	1.00	0.0	0.04	18.07	0.01	1.912	19.30	0.00	7.4	92.6	0.0	-1.44	0.70	0.65	-0.15	3.6	0.004	0.68	0.0	0.04	19.49	0.01	1.996	14.55	0.27	5.4	94.6	0.0	-0.61	1.53	0.77	0.81	1.44	15666	1807	16	68	8	0	0	logfile
✔	6UMM	20820	2021-08-09	2019-10-09	3.7	6.74	4.15	4.0	0.006	0.79	0.0	0.04	13.23	0.00	2.203	11.69	0.17	4.8	95.2	0.0	-2.07	0.55	0.56	-0.10	4.1	0.003	0.92	0.0	0.05	14.40	0.00	2.075	21.12	0.17	3.8	96.2	0.0	0.87	1.25	0.62	0.82	0.06	23658	3184	10	0	0	0	0	logfile
✔	5G2X	3331	2021-08-08	2016-04-16	3.8	3.49	—	3.4	0.001	0.32	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.006	0.99	0.0	0.05	21.03	0.01	1.921	46.80	0.23	20.8	77.9	1.3	-4.85	2.50	0.81	0.67	1.09	19072	487	3	704	0	0	0	logfile
✔	6SSJ	10295	2021-08-13	2019-09-08	2.75	3.13	—	3.2	0.016	1.25	0.0	0.08	12.91	0.01	1.227	9.08	0.54	3.2	96.8	0.0	-4.66	0.49	0.47	-0.09	3.1	0.010	0.97	8.0	0.05	17.38	0.01	1.512	7.87	1.45	2.3	97.7	0.0	0.01	2.12	0.71	0.84	2.26	104100	13320	60	0	0	0	0	logfile
✔	6U0M	20607	2021-08-11	2019-08-14	3.9	4.53	—	4.3	0.005	1.05	2.0	0.06	16.74	0.01	2.211	9.80	0.47	13.2	86.7	0.2	-5.28	0.81	0.63	-0.08	4.3	0.003	0.80	0.0	0.04	17.48	0.00	2.145	14.09	0.25	9.4	90.5	0.0	-2.72	1.94	0.87	0.78	0.39	41146	5105	16	34	3	0	0	logfile
✔	6JCT	9797	2021-08-25	2019-01-30	3.18	3.30	—	3.4	0.008	1.08	0.0	0.06	10.16	0.01	0.594	62.26	0.44	7.2	92.6	0.2	-3.86	0.51	0.40	-0.08	3.2	0.008	0.75	2.0	0.04	15.40	0.01	1.504	13.86	0.10	6.2	93.8	0.0	-1.98	1.84	0.83	0.87	3.56	246660	30960	60	0	0	0	0	logfile
✔	6KKR	0701	2021-08-07	2019-07-27	2.9	2.91	—	20.0	0.008	1.10	0.0	0.06	10.85	0.01	2.348	3.23	0.23	3.9	96.1	0.0	-3.53	0.05	0.00	-0.07	2.8	0.003	0.69	0.0	0.04	12.81	0.00	2.153	10.40	2.27	3.4	96.6	0.0	0.87	1.66	0.12	0.11	-0.13	8416	1074	4	0	24	0	0	logfile

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