Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LC9	23270	2023-02-17	2021-01-10	3.2	3.25	—	3.1	0.004	0.72	0.0	0.05	17.46	0.00	1.884	31.60	18.58	13.4	86.6	0.0	-4.15	0.71	0.77	-0.84	3.1	0.003	0.67	0.0	0.05	16.66	0.00	2.060	26.52	1.18	10.8	89.2	0.0	-3.54	0.68	0.68	0.78	0.44	3497	525	12	0	0	0	0	logfile
✔	6RJU	4906	2023-02-16	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	9.8	0.003	0.63	0.0	0.03	15.97	0.00	2.424	6.03	0.00	6.2	93.8	0.0	-0.13	1.31	0.27	0.05	0.48	1992	131	1	0	0	0	997	logfile
✔	7N8N	24238	2023-02-20	2021-06-15	3.89	5.26	—	4.4	0.006	0.85	0.0	0.04	28.11	0.01	2.035	27.61	0.00	9.6	90.4	0.0	-1.71	0.87	0.78	-0.56	4.4	0.005	0.74	0.0	0.04	28.70	0.01	2.032	25.58	0.31	6.5	93.3	0.3	-0.47	1.28	0.87	0.80	-0.27	11121	798	6	250	0	0	0	logfile
✔	7ZPK	14856	2023-02-25	2022-04-27	3.81	7.29	3.88	5.6	0.004	0.81	0.0	0.05	13.25	0.02	2.214	2.12	0.68	2.8	97.2	0.0	0.04	0.81	0.55	-0.44	4.1	0.004	0.67	0.0	0.04	15.75	0.01	1.886	22.41	0.38	4.9	95.1	0.0	0.42	2.37	0.86	0.73	-0.53	25935	1513	3	55	0	0	12760	logfile
✔	7TMC	25995	2023-02-17	2022-01-19	3.25	3.24	2.95	4.2	0.004	0.66	0.0	0.06	15.86	0.01	2.152	13.78	0.00	9.5	90.5	0.0	-4.08	0.21	0.31	-0.39	3.5	0.004	0.81	0.0	0.07	17.25	0.01	2.100	17.59	0.53	10.5	89.5	0.0	-3.76	1.94	0.34	0.74	3.12	3426	405	6	0	12	0	0	logfile
✔	5VA2	8651	2023-02-22	2017-03-24	3.8	5.28	—	4.3	0.008	1.08	0.0	0.06	12.47	0.00	1.607	11.18	1.08	7.7	90.7	1.6	-3.86	0.64	0.74	-0.32	4.3	0.004	0.98	0.0	0.05	16.04	0.00	2.082	26.45	0.70	5.3	94.3	0.4	-1.34	2.67	0.67	0.83	0.03	17576	2232	4	0	0	0	0	logfile
✔	7EFo	31087	2023-02-18	2021-03-22	3.85	4.26	—	38.0	0.010	1.20	1.0	0.15	17.15	0.01	2.071	58.70	6.18	7.1	92.8	0.1	-2.21	0.11	0.02	-0.28	4.2	0.003	0.76	0.0	0.04	17.43	0.00	2.154	18.19	0.39	6.0	94.0	0.0	-1.06	2.12	0.15	0.09	0.19	7306	916	5	0	1	0	0	logfile
✔	7FG3	31577	2023-02-18	2021-07-25	3.9	3.62	—	4.0	0.006	1.13	0.0	0.06	14.47	0.01	1.929	37.23	0.00	18.5	80.8	0.7	-4.60	0.22	0.47	-0.27	4.0	0.004	0.92	0.0	0.05	16.64	0.01	2.088	24.71	0.10	15.3	84.1	0.5	-3.68	0.78	0.23	0.45	0.35	9054	1166	2	0	0	0	0	logfile
✔	7TTS	26122	2023-02-22	2022-02-01	2.9	12.34	—	—	0.008	0.99	1.0	0.08	12.67	0.01	1.788	5.64	0.30	3.2	96.6	0.1	1.89	0.77	0.55	-0.20	—	0.003	0.60	0.0	0.04	13.61	0.00	1.831	19.04	0.24	3.7	96.2	0.1	1.97	1.03	0.84	0.81	-0.20	18793	2686	12	0	23	0	0	logfile
✔	7oLE	12979	2023-02-26	2021-05-19	3.41	4.34	3.59	3.9	0.013	1.74	25.0	0.10	15.12	0.01	1.371	42.05	0.38	17.2	81.9	0.8	-5.68	0.55	0.26	-0.19	3.6	0.003	0.80	0.0	0.04	15.95	0.01	2.131	19.19	0.29	10.0	89.8	0.2	-1.90	1.96	0.77	0.76	0.84	26995	2899	14	0	1129	0	0	logfile
✔	7RYE	24735	2023-02-23	2021-08-25	3.9	4.10	—	4.0	0.003	0.65	0.0	0.04	14.57	0.00	2.090	14.13	0.00	3.7	96.3	0.0	1.07	0.76	0.69	-0.18	4.0	0.004	0.75	0.0	0.04	17.66	0.00	2.049	16.16	0.42	4.3	95.7	0.0	1.29	1.09	0.81	0.79	0.32	19708	2535	24	0	0	0	0	logfile
✔	6CU8	7619	2023-02-17	2018-03-23	3.6	3.65	—	4.2	0.004	0.73	0.0	0.06	7.75	0.00	2.412	6.41	0.00	5.1	94.9	0.0	-2.86	0.45	0.73	-0.16	4.2	0.003	0.71	0.0	0.05	13.21	0.00	2.161	12.65	0.65	10.0	90.0	0.0	-3.04	1.78	0.42	0.72	2.87	2880	410	10	0	0	0	0	logfile
✔	7oCK	12809	2023-02-26	2021-04-27	3.6	5.02	—	8.3	0.008	0.86	0.0	0.05	14.98	0.01	1.988	36.10	0.20	7.7	92.1	0.2	-2.93	0.80	0.41	-0.16	5.6	0.005	0.92	0.0	0.05	16.96	0.01	2.008	39.34	0.37	7.5	92.4	0.1	-1.36	1.42	0.87	0.65	0.03	28276	3666	12	0	0	0	0	logfile
✔	7LJ3	23388	2023-02-25	2021-01-28	2.9	2.92	—	3.4	0.005	0.72	0.0	0.04	17.12	0.00	1.041	27.61	3.30	3.6	96.0	0.4	0.29	0.10	0.23	-0.14	2.9	0.003	0.60	0.0	0.03	19.24	0.00	2.017	7.67	4.04	4.5	95.4	0.2	2.58	1.42	0.22	0.79	1.76	25714	2564	12	225	0	0	0	logfile
✔	7PC2	13316	2023-02-26	2021-08-03	2.8	3.39	—	6.5	0.033	1.53	5.0	0.05	15.16	0.01	1.809	8.92	1.49	7.8	92.2	0.0	-3.81	0.43	0.05	-0.14	2.9	0.006	1.00	0.0	0.06	16.43	0.01	2.020	21.81	3.39	7.4	92.6	0.1	-1.61	1.49	0.61	0.43	0.42	27063	3093	68	0	210	0	0	logfile
✔	7VZF	32227	2023-02-16	2021-11-16	2.95	2.71	—	3.0	0.009	1.06	0.0	0.06	16.23	0.01	1.971	38.45	0.00	26.5	73.5	0.0	-5.56	0.30	0.43	-0.13	2.8	0.005	0.93	0.0	0.05	18.70	0.00	2.192	14.23	5.32	20.2	79.8	0.0	-4.30	1.92	0.37	0.63	-0.01	2628	363	3	0	0	0	0	logfile
✔	8E55	27903	2023-02-20	2022-08-19	3.85	4.07	3.34	4.0	0.007	0.67	0.0	0.03	12.36	0.00	2.252	3.39	0.50	2.5	97.5	0.0	1.17	0.66	0.60	-0.11	4.0	0.003	0.55	0.0	0.03	16.13	0.00	2.262	10.49	0.00	1.8	98.2	0.0	4.40	1.43	0.69	0.70	-0.11	12176	780	4	0	0	0	6104	logfile
✘	6UMM	20820	2023-02-24	2019-10-09	3.7	6.74	4.15	4.0	0.006	0.79	0.0	0.04	13.23	0.00	2.203	11.97	0.17	4.8	95.2	0.0	-2.07	0.55	0.56	-0.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23658	3184	10	0	0	0	0	logfile
✔	5G2X	3331	2023-02-22	2016-04-16	3.8	3.49	—	3.4	0.001	0.31	0.0	0.02	11.56	0.00	2.219	4.36	0.45	19.7	74.4	5.9	-5.72	0.51	0.30	-0.09	3.3	0.004	0.76	0.0	0.03	18.97	0.00	2.000	29.45	0.91	18.5	80.5	1.1	-5.04	2.32	0.80	0.65	0.86	19072	487	3	704	0	0	0	logfile
✔	7UHB	26511	2023-02-16	2022-03-26	3.0	3.17	2.97	3.2	0.011	1.35	3.0	0.12	9.86	0.00	2.562	5.08	1.42	3.0	96.6	0.4	-0.52	0.52	0.54	-0.09	3.1	0.003	0.62	0.0	0.04	16.29	0.00	2.196	8.70	1.42	3.8	96.2	0.0	0.66	2.42	0.69	0.83	3.49	2141	270	3	0	3	0	0	logfile

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