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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 5MPP | 3538 | 2024-03-15 | 2016-12-17 | 3.9 | 4.03 | — | 4.1 | 0.009 | 1.02 | 0.0 | 0.06 | 14.77 | 0.01 | 2.456 | 7.21 | 5.00 | 5.3 | 94.7 | 0.0 | -3.86 | 0.58 | 0.49 | -0.06 | 4.0 | 0.004 | 0.73 | 0.0 | 0.05 | 17.70 | 0.00 | 2.134 | 13.76 | 4.46 | 3.9 | 96.1 | 0.0 | 0.71 | 3.88 | 0.82 | 0.86 | 0.63 | 70560 | 9240 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 6SXA | 10337 | 2024-03-11 | 2019-09-25 | 3.6 | 5.82 | 4.21 | 4.6 | 0.010 | 1.37 | 5.0 | 0.09 | 15.20 | 0.01 | 2.245 | 15.25 | 3.18 | 10.9 | 88.9 | 0.2 | -4.66 | 0.83 | 0.67 | -0.05 | 4.6 | 0.003 | 0.80 | 0.0 | 0.04 | 15.05 | 0.00 | 2.273 | 12.04 | 2.46 | 5.1 | 94.7 | 0.1 | -0.15 | 1.72 | 0.91 | 0.85 | 0.41 | 7014 | 943 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YPi | 34001 | 2024-03-23 | 2022-08-03 | 3.8 | 4.97 | 3.95 | 3.9 | 0.007 | 1.26 | 2.0 | 0.07 | 13.34 | 0.01 | 1.737 | 14.24 | 0.13 | 6.9 | 93.1 | 0.0 | -2.94 | 0.80 | 0.59 | -0.05 | 3.9 | 0.005 | 0.85 | 1.0 | 0.05 | 15.19 | 0.01 | 1.539 | 33.67 | 2.59 | 8.1 | 91.9 | 0.0 | -1.63 | 1.31 | 0.82 | 0.64 | -0.17 | 36476 | 4638 | 8 | 0 | 2 | 0 | 0 | logfile |
✔ | 8iEN | 35387 | 2024-03-11 | 2023-02-15 | 3.25 | 3.66 | 3.30 | 7.2 | 0.004 | 1.21 | 0.0 | 0.04 | 14.04 | 0.00 | 2.168 | 8.43 | 0.24 | 5.0 | 94.9 | 0.1 | -2.18 | 0.18 | 0.00 | -0.05 | 3.5 | 0.003 | 1.04 | 0.0 | 0.04 | 16.13 | 0.01 | 2.094 | 16.86 | 1.18 | 8.4 | 91.6 | 0.0 | -1.45 | 1.69 | 0.35 | 0.28 | 0.69 | 7678 | 991 | 2 | 0 | 4 | 0 | 0 | logfile |
✔ | 8GWG | 34312 | 2024-03-18 | 2022-09-17 | 3.37 | 3.96 | 3.48 | 7.9 | 0.009 | 0.94 | 5.0 | 0.06 | 18.83 | 0.01 | 2.045 | 13.54 | 5.14 | 8.4 | 91.2 | 0.4 | -1.94 | 0.59 | 0.16 | -0.05 | 3.5 | 0.005 | 0.92 | 1.0 | 0.05 | 18.74 | 0.01 | 1.641 | 23.79 | 4.08 | 7.9 | 91.9 | 0.2 | -2.18 | 1.77 | 0.76 | 0.62 | 0.32 | 21955 | 2668 | 13 | 52 | 9 | 1 | 0 | logfile |
✔ | 7R4Q | 14314 | 2024-03-25 | 2022-02-09 | 3.6 | 3.14 | — | 5.7 | 0.022 | 3.26 | 109.0 | 0.39 | 16.09 | 0.02 | 1.450 | 30.29 | 3.30 | 8.7 | 91.1 | 0.2 | -2.35 | 0.48 | 0.21 | -0.05 | 4.0 | 0.011 | 1.13 | 8.0 | 0.17 | 15.41 | 0.01 | 1.786 | 28.61 | 1.65 | 8.9 | 91.0 | 0.1 | -2.25 | 1.78 | 0.64 | 0.59 | 0.51 | 51420 | 3414 | 13 | 0 | 43 | 0 | 24182 | logfile |
✔ | 7NZM | 12665 | 2024-03-14 | 2021-03-24 | 3.96 | 6.56 | 4.22 | 4.2 | 0.007 | 1.12 | 0.0 | 0.06 | 14.32 | 0.01 | 1.774 | 11.10 | 0.00 | 3.8 | 96.2 | 0.0 | -1.56 | 0.77 | 0.51 | -0.04 | 4.3 | 0.005 | 1.03 | 0.0 | 0.04 | 15.04 | 0.00 | 2.012 | 21.70 | 0.52 | 2.9 | 97.1 | 0.0 | 0.39 | 1.50 | 0.95 | 0.84 | 0.23 | 9109 | 1157 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 8RC4 | 19047 | 2024-03-17 | 2023-12-06 | 3.1 | 4.01 | 2.99 | 7.5 | 0.005 | 0.80 | 0.0 | 0.05 | 15.58 | 0.01 | 2.017 | 2.88 | 0.10 | 3.9 | 96.0 | 0.0 | 0.73 | 0.69 | 0.31 | -0.03 | 2.5 | 0.004 | 0.80 | 0.0 | 0.05 | 16.44 | 0.00 | 1.436 | 21.80 | 1.52 | 4.4 | 95.6 | 0.0 | -0.06 | 1.35 | 0.82 | 0.64 | 0.61 | 78273 | 11105 | 18 | 0 | 4 | 0 | 0 | logfile |
✔ | 7T3L | 25662 | 2024-03-26 | 2021-12-08 | 3.6 | 8.29 | — | 3.5 | 0.004 | 0.74 | 0.0 | 0.05 | 18.09 | 0.01 | 2.223 | 7.57 | 0.52 | 5.0 | 95.0 | 0.0 | -1.92 | 0.73 | 0.45 | -0.03 | 3.4 | 0.003 | 0.61 | 0.0 | 0.04 | 18.37 | 0.00 | 2.091 | 21.81 | 1.24 | 5.6 | 94.4 | 0.0 | 0.29 | 1.18 | 0.95 | 0.84 | -0.02 | 52219 | 6242 | 28 | 200 | 0 | 0 | 0 | logfile |
✔ | 7oPE | 13017 | 2024-03-19 | 2021-05-31 | 3.2 | 5.30 | 3.21 | 5.0 | 0.011 | 1.04 | 2.0 | 0.06 | 23.47 | 0.01 | 1.028 | 4.81 | 0.23 | 8.2 | 91.6 | 0.2 | -3.62 | 0.89 | 0.72 | -0.03 | 5.0 | 0.005 | 0.76 | 0.0 | 0.04 | 24.13 | 0.01 | 2.006 | 32.27 | 5.12 | 7.8 | 92.0 | 0.1 | -1.53 | 1.13 | 0.93 | 0.88 | 0.28 | 93862 | 3818 | 33 | 2996 | 0 | 0 | 0 | logfile |
✔ | 7ASN | 11901 | 2024-03-17 | 2020-10-27 | 2.73 | 4.10 | — | 3.0 | 0.008 | 1.04 | 0.0 | 0.05 | 25.09 | 0.01 | 1.953 | 13.53 | 0.48 | 11.3 | 88.6 | 0.1 | -3.27 | 0.46 | 0.23 | -0.03 | 2.3 | 0.005 | 0.78 | 0.0 | 0.04 | 24.92 | 0.01 | 2.022 | 25.16 | 3.59 | 10.0 | 90.0 | 0.0 | -2.38 | 2.01 | 0.87 | 0.80 | 1.19 | 80694 | 2545 | 25 | 2848 | 0 | 0 | 0 | logfile |
✔ | 8HAo | 34598 | 2024-03-17 | 2022-10-26 | 3.76 | 3.06 | 3.49 | 3.8 | 0.003 | 0.50 | 0.0 | 0.04 | 15.90 | 0.00 | 1.785 | 5.73 | 0.40 | 2.9 | 96.9 | 0.2 | 1.91 | 0.58 | 0.52 | -0.03 | 3.8 | 0.003 | 0.84 | 0.0 | 0.05 | 17.45 | 0.00 | 2.032 | 18.80 | 4.92 | 4.3 | 95.6 | 0.1 | 0.48 | 1.23 | 0.65 | 0.69 | 0.83 | 18479 | 2314 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 5VZL | 8749 | 2024-03-16 | 2017-05-29 | 3.9 | 4.38 | — | 19.0 | 0.006 | 0.96 | 0.0 | 0.05 | 17.27 | 0.01 | 2.216 | 7.72 | 0.25 | 8.4 | 91.6 | 0.0 | -4.13 | 0.31 | 0.03 | -0.03 | 17.0 | 0.002 | 0.61 | 0.0 | 0.04 | 17.87 | 0.00 | 1.222 | 10.54 | 1.58 | 4.2 | 95.8 | 0.0 | -0.94 | 1.05 | 0.36 | 0.16 | 0.61 | 13915 | 1451 | 3 | 115 | 1 | 0 | 0 | logfile |
✔ | 5LKH | 4068 | 2024-03-23 | 2016-07-22 | 3.46 | 5.27 | — | 11.0 | 0.018 | 2.37 | 65.0 | 0.12 | 12.66 | 0.02 | 2.255 | 87.12 | 1.96 | 3.4 | 95.2 | 1.4 | -0.27 | 0.38 | 0.17 | -0.03 | 8.8 | 0.005 | 0.87 | 0.0 | 0.04 | 15.69 | 0.00 | 1.528 | 24.67 | 2.06 | 5.7 | 94.2 | 0.0 | -0.64 | 2.00 | 0.50 | 0.54 | 0.14 | 37345 | 4740 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 7D58 | 30577 | 2024-03-24 | 2020-09-25 | 2.9 | 3.51 | — | 5.3 | 0.002 | 0.66 | 0.0 | 0.54 | 14.07 | 0.00 | 2.139 | 8.32 | 0.09 | 5.8 | 94.2 | 0.0 | -3.64 | 0.55 | 0.24 | -0.02 | 3.4 | 0.007 | 1.29 | 0.0 | 0.17 | 17.89 | 0.01 | 2.024 | 18.55 | 2.36 | 6.4 | 93.5 | 0.0 | -2.21 | 2.12 | 0.79 | 0.76 | 1.04 | 40568 | 4980 | 26 | 46 | 8 | 0 | 0 | logfile |
✔ | 8ERL | 28554 | 2024-03-11 | 2022-10-12 | 3.9 | 4.58 | 3.40 | 4.1 | 0.005 | 1.28 | 0.0 | 0.07 | 15.42 | 0.01 | 2.296 | 4.84 | 0.27 | 9.5 | 90.5 | 0.0 | -3.82 | 0.86 | 0.76 | -0.02 | 4.1 | 0.003 | 0.73 | 0.0 | 0.04 | 15.84 | 0.00 | 2.113 | 23.33 | 3.43 | 8.8 | 91.2 | 0.0 | -2.32 | 1.03 | 0.87 | 0.79 | -0.33 | 6600 | 830 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q1Z | 13776 | 2024-03-19 | 2021-10-22 | 3.4 | 2.41 | — | 4.0 | 0.004 | 0.61 | 0.0 | 0.04 | 12.72 | 0.00 | 2.074 | 6.27 | 0.04 | 2.2 | 97.8 | 0.0 | 0.60 | 0.48 | 0.31 | -0.02 | 2.2 | 0.004 | 0.74 | 0.0 | 0.05 | 15.15 | 0.00 | 2.096 | 11.53 | 2.35 | 3.1 | 96.9 | 0.0 | -0.07 | 1.57 | 0.74 | 0.74 | 1.29 | 23694 | 2916 | 21 | 0 | 63 | 0 | 0 | logfile |
✔ | 7QWS | 14193 | 2024-03-18 | 2022-01-25 | 3.4 | 3.09 | — | 7.2 | 0.002 | 0.46 | 0.0 | 0.03 | 22.90 | 0.00 | 2.011 | 9.44 | 1.65 | 3.7 | 96.3 | 0.0 | 0.47 | 0.23 | 0.02 | -0.02 | 3.0 | 0.004 | 0.88 | 0.0 | 0.04 | 24.72 | 0.01 | 0.987 | 26.15 | 2.43 | 8.3 | 91.7 | 0.1 | -2.38 | 2.16 | 0.52 | 0.59 | 0.52 | 137913 | 7047 | 55 | 3769 | 126 | 0 | 0 | logfile |
✔ | 8FBP | 28965 | 2024-03-19 | 2022-11-29 | 2.8 | 3.68 | 2.89 | 4.8 | 0.003 | 0.58 | 0.0 | 0.04 | 13.74 | 0.00 | 1.908 | 3.80 | 0.46 | 2.7 | 97.3 | 0.0 | 1.20 | 0.61 | 0.37 | -0.02 | 3.3 | 0.004 | 0.79 | 0.0 | 0.05 | 16.80 | 0.00 | 2.071 | 12.12 | 1.93 | 3.1 | 96.9 | 0.0 | 0.58 | 3.17 | 0.84 | 0.86 | 1.60 | 91071 | 11656 | 28 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J7A | 2660 | 2024-03-15 | 2014-06-03 | 3.2 | 3.24 | 3.33 | 3.2 | 0.008 | 1.39 | 49.0 | 0.10 | 24.28 | 0.01 | 1.715 | 4.56 | 15.41 | 10.5 | 85.4 | 4.2 | -2.49 | 0.31 | 0.55 | -0.02 | 3.2 | 0.005 | 0.77 | 0.0 | 0.04 | 23.17 | 0.01 | 1.822 | 18.07 | 6.12 | 9.2 | 89.6 | 1.2 | -2.23 | 2.69 | 0.40 | 0.78 | 0.95 | 68866 | 4106 | 35 | 1682 | 69 | 0 | 0 | logfile |