Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6N1H	8902	2023-02-20	2018-11-08	3.17	3.22	—	3.2	0.006	1.13	0.0	0.06	12.23	0.01	0.657	31.61	3.97	7.4	92.6	0.0	-7.22	0.39	0.46	0.05	3.2	0.003	0.74	0.0	0.04	17.47	0.00	2.143	11.92	2.70	7.2	92.8	0.0	1.00	4.76	0.63	0.84	1.82	10991	1328	16	0	0	0	0	logfile
✔	6J5T	0680	2023-02-21	2019-01-12	3.4	3.94	—	3.0	0.011	1.21	0.0	0.07	12.81	0.02	2.233	7.03	0.59	11.3	88.4	0.3	-4.25	0.83	0.67	0.05	3.0	0.006	1.05	0.0	0.05	15.84	0.01	2.050	24.46	0.76	11.3	88.5	0.2	-1.87	1.35	0.91	0.85	1.27	53488	6640	25	0	15	0	0	logfile
✔	6Q2o	20576	2023-02-21	2019-08-08	3.65	3.77	—	3.9	0.004	0.77	0.0	0.05	8.38	0.01	1.534	3.25	0.12	5.6	94.4	0.0	-3.75	0.48	0.23	0.05	3.6	0.004	0.78	0.0	0.04	14.70	0.00	2.133	14.79	0.54	7.0	93.0	0.0	-1.65	2.04	0.68	0.64	0.83	15196	1900	8	0	20	0	0	logfile
✔	6NEQ	9358	2023-02-24	2018-12-18	3.32	3.85	—	3.5	0.001	0.37	0.0	0.03	12.81	0.00	1.949	3.28	0.35	10.3	88.1	1.6	-2.42	0.69	0.51	0.07	3.5	0.003	0.66	0.0	0.04	16.27	0.00	2.100	12.83	0.23	5.4	94.6	0.1	-0.31	1.98	0.85	0.85	1.31	65776	5509	32	952	147	0	0	logfile
✔	6QoZ	4610	2023-02-22	2019-02-13	3.4	3.65	3.13	3.5	0.011	1.46	4.0	0.09	15.40	0.01	1.243	4.20	5.13	6.0	93.1	0.9	-3.28	0.40	0.62	0.09	3.5	0.003	0.69	0.0	0.04	15.22	0.00	2.120	7.91	0.55	2.8	97.2	0.0	-1.71	1.88	0.49	0.87	2.94	17987	2307	9	0	0	0	0	logfile
✔	6QS6	4624	2023-02-27	2019-02-20	3.9	4.03	2.44	4.0	0.011	1.09	0.0	0.06	10.53	0.01	2.187	6.85	0.07	8.2	91.8	0.0	-4.07	0.57	0.46	0.09	3.9	0.003	0.80	0.0	0.05	16.46	0.00	1.964	18.64	0.47	5.7	94.3	0.0	-0.45	1.40	0.74	0.77	0.63	28557	3568	13	0	35	0	0	logfile
✔	7RTV	24690	2023-02-17	2021-08-15	3.96	4.06	—	4.1	0.003	0.68	0.0	0.04	16.49	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.004	0.88	0.0	0.04	18.40	0.00	2.174	15.94	0.97	3.0	97.0	0.0	2.97	1.77	0.41	0.64	-0.08	2881	366	3	0	6	0	0	logfile
✔	5ZYA	6915	2023-02-22	2018-05-23	3.95	4.18	—	4.1	0.009	1.35	0.0	0.16	11.24	0.01	1.673	8.53	0.32	9.6	90.4	0.0	-4.57	0.67	0.52	0.10	4.0	0.004	0.93	0.0	0.06	15.44	0.00	2.070	18.03	0.70	7.4	92.6	0.0	-1.92	1.82	0.77	0.72	0.97	16957	2143	7	0	5	0	0	logfile
✔	7TAX	25789	2023-02-26	2021-12-21	2.8	3.31	—	3.3	0.003	0.67	0.0	0.04	15.14	0.01	2.236	6.32	0.00	4.6	95.4	0.0	-0.99	0.64	0.56	0.11	3.2	0.005	0.72	0.0	0.04	17.78	0.00	2.116	12.92	2.45	5.8	94.2	0.0	-0.16	1.24	0.77	0.84	2.79	27855	3349	14	99	0	0	0	logfile
✔	6VYB	22748	2023-02-24	2020-02-25	3.2	3.61	4.19	10.0	0.014	1.36	1.0	0.09	10.35	0.01	2.299	0.53	0.13	2.4	97.5	0.1	0.50	-0.01	-0.01	0.12	3.4	0.003	0.66	0.0	0.05	12.68	0.00	2.123	10.83	0.09	4.0	96.0	0.1	-0.55	1.03	0.03	0.09	0.43	22365	2875	18	0	59	0	0	logfile
✔	6CXC	7774	2023-02-21	2018-04-02	3.9	4.14	—	4.0	0.006	1.02	0.0	0.06	10.95	0.01	2.198	9.05	0.29	6.2	93.8	0.0	-4.06	0.71	0.71	0.12	4.0	0.003	0.80	0.0	0.05	16.00	0.00	2.124	20.73	0.34	5.3	94.7	0.0	-2.08	2.14	0.73	0.76	-0.05	15196	1945	18	0	6	0	0	logfile
✔	7CQ7	30438	2023-02-21	2020-08-08	3.55	3.95	—	4.0	0.008	1.07	0.0	0.06	10.32	0.01	1.915	5.84	0.07	9.3	90.7	0.0	-4.47	0.39	0.42	0.13	3.9	0.004	0.89	0.0	0.05	15.52	0.00	2.075	15.15	0.47	7.1	92.9	0.0	-1.05	1.44	0.53	0.75	0.81	13810	1766	8	0	9	0	0	logfile
✔	5LNK	4481	2023-02-24	2016-08-04	3.9	3.95	17.72	71.0	0.007	1.05	0.0	1.04	10.85	0.01	2.038	25.42	0.32	12.6	86.9	0.5	-4.85	0.01	0.00	0.13	40.0	0.009	1.71	0.0	0.31	13.69	0.01	1.425	16.41	0.33	10.3	89.5	0.3	-1.27	0.81	0.05	0.14	0.19	63760	7918	61	0	144	0	0	logfile
✔	6ZGE	23580	2023-02-26	2020-06-18	2.6	2.72	2.67	20.0	0.009	0.91	0.0	0.06	12.46	0.01	2.344	2.22	0.73	4.7	95.2	0.1	-0.97	0.06	0.00	0.14	20.0	0.005	0.78	0.0	0.05	13.62	0.00	2.128	9.50	1.01	4.8	95.2	0.0	-0.90	0.80	0.12	0.12	0.37	26991	3294	39	0	81	48	0	logfile
✔	8D6X	27225	2023-02-27	2022-06-06	3.2	10.22	—	—	0.003	0.62	0.0	0.04	12.14	0.00	2.195	17.76	0.06	2.6	97.4	0.0	1.17	0.70	0.42	0.14	—	0.003	0.68	0.0	0.04	14.52	0.00	2.006	31.08	0.17	4.9	95.1	0.0	0.20	4.65	0.78	0.54	0.09	68362	8957	41	0	0	0	0	logfile
✔	6VXX	24693	2023-02-24	2020-02-25	2.8	3.28	2.89	39.0	0.016	1.35	0.0	0.09	10.67	0.01	2.389	0.81	0.23	2.4	97.6	0.0	0.27	0.07	0.00	0.14	2.8	0.003	0.69	0.0	0.05	13.86	0.00	2.095	12.22	2.00	3.9	96.1	0.0	-0.28	1.68	0.14	0.11	0.11	23694	2916	21	0	63	0	0	logfile
✔	7ZPJ	14855	2023-02-24	2022-04-27	3.81	3.24	3.86	6.5	0.004	0.86	0.0	0.05	13.19	0.01	2.159	2.94	0.67	3.3	96.7	0.0	0.22	0.54	0.33	0.15	2.1	0.004	0.69	0.0	0.04	15.40	0.01	1.881	14.65	0.75	4.9	95.1	0.0	-0.12	1.51	0.64	0.57	0.39	23479	1355	3	55	0	0	11508	logfile
✔	7RTU	24689	2023-02-17	2021-08-15	3.89	4.06	—	4.1	0.003	0.51	0.0	0.04	14.84	0.00	2.175	7.11	0.16	3.1	96.9	0.0	4.32	0.55	0.69	0.15	4.1	0.004	0.57	0.0	0.04	16.83	0.00	2.202	7.78	0.63	2.9	97.1	0.0	4.01	0.30	0.62	0.73	0.20	5962	754	6	0	12	0	0	logfile
✔	6H5i	0140	2023-02-21	2018-07-24	3.9	3.87	—	23.0	0.006	0.81	0.0	0.05	10.47	0.01	2.196	2.64	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.7	0.003	0.67	0.0	0.04	15.36	0.00	2.097	14.22	0.32	4.1	95.9	0.0	1.46	1.26	0.37	0.24	0.27	43900	5392	26	0	0	0	0	logfile
✔	5X59	6704	2023-02-26	2017-02-15	3.7	3.77	—	3.7	0.011	1.65	0.0	0.08	14.81	0.01	1.477	23.24	4.97	13.2	85.4	1.3	-3.87	0.48	0.41	0.15	3.7	0.005	1.07	0.0	0.05	15.78	0.01	1.997	20.63	0.38	12.5	87.3	0.2	-2.21	1.17	0.58	0.61	1.00	26838	3423	6	0	30	0	0	logfile

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