Table showing results for July 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ZNK	14804	2023-07-15	2022-04-21	3.9	6.01	—	7.4	0.006	0.88	2.0	0.05	11.83	0.01	1.707	9.96	5.83	6.4	93.3	0.3	-2.12	0.73	0.46	0.00	7.4	0.004	0.98	0.0	0.05	14.36	0.01	2.023	25.83	0.65	7.1	92.8	0.1	0.17	2.42	0.80	0.66	-0.17	88261	11599	32	6	0	0	0	logfile
✔	7TR9	26083	2023-07-16	2022-01-28	3.9	4.30	—	4.1	0.003	0.68	2.0	0.05	13.00	0.00	1.387	16.20	0.17	8.7	90.9	0.4	-2.44	0.80	0.72	0.00	4.0	0.004	0.80	0.0	0.05	15.90	0.00	1.167	26.68	0.32	9.2	90.5	0.3	-2.23	2.94	0.82	0.78	0.68	34208	4192	20	75	2	0	0	logfile
✔	6CRZ	7577	2023-07-12	2018-03-19	3.3	3.42	3.35	4.5	0.007	1.01	0.0	0.06	9.26	0.01	2.254	6.77	0.04	7.8	92.2	0.0	-4.10	0.39	0.17	0.01	3.3	0.004	0.75	0.0	0.05	13.80	0.00	2.093	12.74	0.58	6.4	93.6	0.0	-1.78	1.50	0.62	0.59	0.81	25909	3205	25	0	66	0	0	logfile
✔	6QYM	4679	2023-07-12	2019-03-09	3.6	3.25	—	4.0	0.007	0.89	0.0	0.05	9.66	0.01	2.201	8.77	0.00	6.5	93.5	0.0	-4.63	0.62	0.60	0.02	3.5	0.005	0.95	0.0	0.05	17.36	0.00	2.072	29.90	1.38	5.4	94.6	0.0	-0.66	2.36	0.69	0.67	-0.16	26880	3360	12	0	0	0	0	logfile
✔	7WHD	32499	2023-07-16	2021-12-30	2.65	3.19	—	3.9	0.006	0.71	0.0	0.05	14.04	0.00	1.554	11.40	0.93	9.1	90.8	0.1	-1.88	0.61	0.35	0.03	3.1	0.003	0.86	0.0	0.05	16.81	0.00	2.103	13.04	3.66	7.1	92.9	0.0	-1.46	1.57	0.85	0.82	1.93	34209	4331	29	0	54	0	0	logfile
✔	6LTJ	0974	2023-07-16	2020-01-22	3.7	4.16	—	15.0	0.010	1.08	12.0	0.07	22.08	0.01	2.173	14.05	2.63	6.4	93.3	0.3	-3.67	0.46	0.08	0.04	3.6	0.004	0.79	0.0	0.04	22.52	0.00	2.045	22.04	0.34	4.6	95.4	0.0	-0.58	1.62	0.60	0.29	0.45	34283	3656	21	238	1	0	0	logfile
✔	6oiG	20077	2023-07-10	2019-04-09	3.8	5.08	—	5.0	0.011	1.45	2.0	0.07	19.62	0.01	0.087	53.69	1.20	15.9	83.9	0.2	-5.09	0.77	0.48	0.04	4.9	0.010	1.00	6.0	0.05	18.66	0.01	1.416	32.12	0.74	13.7	86.2	0.1	-2.80	3.10	0.89	0.86	0.08	129140	6757	48	3522	116	0	0	logfile
✔	6XSS	22305	2023-07-04	2020-07-16	3.7	3.37	—	3.3	0.003	0.63	0.0	0.04	12.31	0.00	1.843	28.34	0.00	2.5	97.5	0.0	-0.32	0.74	0.78	0.04	3.3	0.003	0.80	0.0	0.04	16.96	0.00	2.251	16.62	0.49	0.9	99.1	0.0	2.42	1.33	0.74	0.79	0.26	8048	1040	4	0	0	0	0	logfile
✔	7S8V	24927	2023-07-06	2021-09-20	3.73	4.42	—	3.9	0.004	0.65	0.0	0.09	12.46	0.00	2.098	5.61	0.14	7.0	93.0	0.0	-3.48	0.68	0.64	0.04	3.9	0.003	0.68	0.0	0.04	14.49	0.00	1.955	15.73	0.00	9.4	90.6	0.0	-2.21	1.59	0.70	0.71	0.69	12502	782	7	0	12	0	6045	logfile
✔	6J5T	0680	2023-07-03	2019-01-12	3.4	3.94	—	3.0	0.011	1.21	0.0	0.07	12.81	0.02	2.233	7.03	0.59	11.3	88.4	0.3	-4.25	0.83	0.67	0.05	3.0	0.006	1.05	0.0	0.05	15.84	0.01	2.050	24.51	0.76	11.3	88.5	0.2	-1.87	1.35	0.91	0.85	1.27	53488	6640	25	0	15	0	0	logfile
✔	6Q2o	20576	2023-07-07	2019-08-08	3.65	3.77	—	3.9	0.004	0.79	0.0	0.05	8.40	0.01	1.534	3.25	0.12	5.6	94.4	0.0	-3.75	0.48	0.23	0.05	3.6	0.006	0.95	0.0	0.05	15.06	0.01	2.101	21.20	0.78	9.2	90.8	0.1	-2.53	1.99	0.69	0.66	0.60	15196	1900	8	0	20	0	0	logfile
✔	6RUo	10007	2023-07-20	2019-05-28	3.5	3.56	—	4.0	0.007	1.05	0.0	0.06	13.11	0.01	2.170	7.99	0.40	10.5	89.4	0.1	-4.99	0.53	0.29	0.05	3.5	0.004	0.80	0.0	0.05	17.28	0.00	2.059	18.24	0.66	7.0	93.0	0.0	-2.70	2.38	0.67	0.58	0.65	50792	6086	26	93	8	0	0	logfile
✔	8FTE	29424	2023-07-07	2023-01-12	3.8	3.91	3.67	3.8	0.003	0.63	0.0	0.04	12.35	0.00	2.203	12.31	5.56	3.4	96.6	0.0	0.06	0.48	0.50	0.06	3.8	0.003	0.73	0.0	0.04	14.62	0.00	2.147	8.37	0.44	6.4	93.6	0.0	1.70	1.58	0.56	0.57	0.63	14564	2046	22	0	0	0	0	logfile
✔	6o81	0649	2023-07-16	2019-03-08	3.21	3.63	—	3.5	0.004	0.71	0.0	0.14	11.98	0.01	2.285	4.56	0.34	4.5	95.5	0.0	-4.06	0.69	0.65	0.06	3.5	0.007	0.74	0.0	0.05	14.71	0.00	2.074	10.55	0.49	6.2	93.7	0.0	-0.26	1.10	0.76	0.86	2.72	33693	4949	17	0	29	0	0	logfile
✔	6T59	10380	2023-07-17	2019-10-15	3.11	3.19	3.02	7.3	0.011	0.83	0.0	0.05	17.10	0.00	1.148	10.80	0.76	8.9	91.0	0.1	-5.04	0.22	0.01	0.07	3.1	0.003	0.82	0.0	0.04	19.21	0.01	1.027	22.23	0.57	6.7	93.3	0.0	-2.56	2.15	0.61	0.61	0.53	143047	7383	64	3890	225	0	0	logfile
✔	6NEQ	9358	2023-07-07	2018-12-18	3.32	3.85	—	3.5	0.001	0.37	0.0	0.03	12.81	0.00	1.949	3.29	0.35	10.3	88.1	1.6	-2.42	0.69	0.51	0.07	3.5	0.004	0.68	0.0	0.04	16.33	0.00	2.089	13.57	0.39	5.4	94.5	0.1	-0.36	2.01	0.85	0.85	1.39	65776	5509	32	952	147	0	0	logfile
✘	6QoZ	4610	2023-07-09	2019-02-13	3.4	3.65	3.13	3.5	0.011	1.46	4.0	0.09	15.40	0.01	1.243	4.20	5.13	6.0	93.1	0.9	-3.28	0.40	0.62	0.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17987	2307	9	0	0	0	0	logfile
✔	6QS6	4624	2023-07-13	2019-02-20	3.9	4.03	2.44	4.0	0.011	1.09	0.0	0.06	10.53	0.01	2.187	6.85	0.07	8.2	91.8	0.0	-4.07	0.57	0.46	0.09	3.9	0.003	0.80	0.0	0.05	16.46	0.00	1.964	18.64	0.47	5.7	94.3	0.0	-0.45	1.40	0.74	0.77	0.63	28557	3568	13	0	35	0	0	logfile
✔	7WTD	32779	2023-07-12	2022-02-04	3.9	5.03	—	4.3	0.023	1.20	1.0	0.05	15.55	0.01	0.990	21.59	1.15	7.3	92.6	0.1	-0.88	0.81	0.61	0.10	4.4	0.004	0.94	1.0	0.05	16.56	0.01	2.083	25.45	0.42	8.2	91.8	0.1	-1.39	4.65	0.85	0.72	0.20	27137	3491	6	0	4	0	0	logfile
✔	7EGC	31112	2023-07-05	2021-03-24	3.9	3.72	—	4.9	0.008	1.13	76.0	0.08	15.43	0.01	1.402	24.31	3.39	7.3	91.9	0.8	-3.59	0.43	0.10	0.10	3.1	0.004	0.81	0.0	0.05	16.66	0.00	1.986	17.27	0.40	6.5	93.4	0.2	-0.77	1.26	0.51	0.32	0.51	113129	13879	63	142	18	0	0	logfile

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