Table showing results for November 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RTV	24690	2021-11-01	2021-08-15	3.96	4.06	—	4.1	0.003	0.68	0.0	0.04	16.49	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.004	0.87	0.0	0.05	18.91	0.00	2.178	16.12	0.65	3.0	97.0	0.0	2.90	1.77	0.41	0.64	-0.08	2881	366	3	0	6	0	0	logfile
✔	5ZYA	6915	2021-11-02	2018-05-23	3.95	4.18	—	4.1	0.009	1.35	0.0	0.16	11.13	0.01	1.673	8.53	0.32	9.6	90.4	0.0	-4.57	0.67	0.52	0.10	4.0	0.009	1.24	2.0	0.06	15.61	0.01	1.882	20.06	0.27	6.5	93.5	0.0	-1.88	1.76	0.77	0.73	1.04	16957	2143	7	0	5	0	0	logfile
✔	5ZEP	6921	2021-11-09	2018-02-27	3.4	5.11	—	4.5	0.010	1.18	5.0	0.06	16.72	0.01	1.089	21.17	3.06	8.5	90.3	1.3	-3.96	0.70	0.53	0.11	4.5	0.005	0.77	1.0	0.04	18.04	0.01	1.958	28.66	0.72	8.1	91.8	0.2	-1.56	1.75	0.90	0.86	0.15	152451	6193	58	4802	262	0	0	logfile
✔	6CXC	7774	2021-11-02	2018-04-02	3.9	4.14	—	4.0	0.006	1.02	0.0	0.06	10.95	0.01	2.198	9.05	0.29	6.2	93.8	0.0	-4.06	0.71	0.71	0.12	4.0	0.003	0.81	0.0	0.05	16.17	0.00	2.138	20.96	0.29	6.5	93.5	0.0	-1.82	2.18	0.73	0.76	0.26	15196	1945	18	0	6	0	0	logfile
✔	6W7M	21571	2021-11-06	2020-03-19	3.8	3.72	—	3.6	0.002	0.58	0.0	0.03	16.56	0.00	2.031	14.77	0.10	7.4	92.3	0.3	-3.67	0.68	0.56	0.12	3.6	0.007	0.94	1.0	0.04	18.40	0.01	1.888	27.93	0.83	12.2	87.6	0.2	-2.61	1.42	0.71	0.62	0.56	50694	2319	20	1512	0	0	0	logfile
✔	6CBE	7452	2021-11-24	2018-02-02	2.78	2.88	—	3.9	0.010	0.82	0.0	0.05	9.59	0.01	2.147	9.53	0.00	1.9	98.1	0.0	-2.06	0.28	0.26	0.12	2.9	0.003	0.62	0.0	0.04	16.71	0.00	2.106	11.62	2.75	3.1	96.9	0.0	-0.65	3.92	0.70	0.88	4.29	248520	31080	60	0	0	0	0	logfile
✔	7A24	11615	2021-11-06	2020-08-16	3.8	3.92	—	3.8	0.009	1.17	33.0	1.08	14.86	0.01	0.850	22.86	2.62	9.6	90.1	0.3	-3.10	0.53	0.47	0.12	3.8	0.013	1.94	2.0	0.33	17.66	0.01	1.674	41.03	0.28	10.7	89.2	0.1	-2.57	1.26	0.60	0.62	0.34	49497	6253	46	0	17	0	0	logfile
✔	7APK	11857	2021-11-04	2020-10-17	3.3	3.26	—	3.5	0.004	0.81	0.0	0.05	8.50	0.01	2.256	3.98	0.10	4.7	95.2	0.1	-2.73	0.41	0.22	0.13	2.9	0.009	0.88	0.0	0.04	13.05	0.00	1.717	13.75	0.07	5.9	94.0	0.1	1.19	1.17	0.49	0.43	0.94	72697	9893	30	0	74	0	0	logfile
✔	7CQ7	30438	2021-11-02	2020-08-08	3.55	3.95	—	4.0	0.008	1.07	0.0	0.06	10.32	0.01	1.915	5.80	0.07	9.3	90.7	0.0	-4.47	0.39	0.42	0.13	3.9	0.006	1.19	0.0	0.12	15.73	0.01	1.475	16.42	0.74	7.3	92.6	0.1	-0.79	1.57	0.55	0.77	1.17	13810	1766	8	0	9	0	0	logfile
✔	7EGB	31111	2021-11-02	2021-03-24	3.3	3.51	—	34.0	0.008	1.11	62.0	0.07	15.42	0.01	1.322	21.10	3.22	7.3	91.9	0.8	-3.64	0.32	0.02	0.13	3.1	0.010	1.19	6.0	0.06	17.01	0.01	1.783	28.57	0.43	9.0	90.7	0.3	-1.51	1.27	0.42	0.22	0.30	113098	13887	63	138	18	0	0	logfile
✔	6RAW	4785	2021-11-05	2019-04-08	3.7	3.80	3.66	4.1	0.007	1.29	19.0	0.13	18.21	0.01	1.198	17.62	6.37	18.9	80.8	0.3	-5.55	0.47	0.49	0.14	3.8	0.013	1.12	1.0	0.05	18.45	0.01	1.509	24.87	0.40	12.3	87.7	0.0	-3.07	4.02	0.59	0.63	0.42	39710	4877	18	39	6	0	0	logfile
✔	6S13	10079	2021-11-20	2019-06-18	3.58	3.67	—	5.8	0.023	1.27	2.0	0.06	22.26	0.01	1.596	18.79	21.29	20.5	79.4	0.1	-5.98	0.56	0.28	0.14	3.6	0.012	0.87	2.0	0.04	21.78	0.01	1.315	28.41	1.37	18.9	81.1	0.0	-4.60	2.82	0.68	0.59	0.75	233957	5608	52	4559	0	0	93218	logfile
✘	7A5K	11646	2021-11-07	2020-08-21	3.7	3.12	3.69	40.0	0.014	1.27	3.0	0.06	17.54	0.01	1.211	7.11	0.05	10.7	88.9	0.3	-4.20	0.03	0.00	0.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	171126	14163	108	2644	165	0	0	logfile
✔	3J9Z	6315	2021-11-11	2015-03-27	3.6	3.80	—	3.7	0.017	2.31	171.0	0.16	18.21	0.04	2.267	1.72	3.84	7.6	89.1	3.3	-2.82	0.56	0.39	0.14	3.7	0.005	0.76	0.0	0.04	16.82	0.01	1.994	18.46	1.17	9.8	89.6	0.6	-1.73	2.27	0.84	0.83	1.14	156714	7125	59	4717	1	0	0	logfile
✔	5X59	6704	2021-11-04	2017-02-15	3.7	3.77	—	3.7	0.011	1.65	0.0	0.08	14.81	0.01	1.477	23.24	4.97	13.2	85.4	1.3	-3.87	0.48	0.41	0.15	3.7	0.010	1.25	1.0	0.05	15.68	0.01	1.909	23.66	0.31	11.9	87.9	0.2	-2.31	1.07	0.57	0.59	1.05	26838	3423	6	0	30	0	0	logfile
✔	7RTU	24689	2021-11-01	2021-08-15	3.89	4.06	—	4.1	0.003	0.51	0.0	0.04	14.84	0.00	2.175	7.03	0.16	3.1	96.9	0.0	4.32	0.55	0.69	0.15	4.1	0.004	0.58	0.0	0.04	16.99	0.01	2.199	7.45	0.78	2.7	97.3	0.0	4.07	0.36	0.62	0.74	0.28	5962	754	6	0	12	0	0	logfile
✔	6H5i	0140	2021-11-01	2018-07-24	3.9	3.87	—	23.0	0.006	0.81	0.0	0.05	10.47	0.01	2.196	2.63	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.8	0.011	1.09	1.0	0.04	15.65	0.01	1.554	24.30	0.08	4.8	95.2	0.0	0.00	2.11	0.40	0.29	0.25	43900	5392	26	0	0	0	0	logfile
✔	4V91	2599	2021-11-03	2014-03-21	3.7	3.84	—	3.8	0.133	4.77	525.0	0.43	20.66	0.07	0.695	20.11	12.79	14.1	78.2	7.8	-5.39	0.33	0.36	0.15	3.8	0.024	1.03	1.0	0.04	17.12	0.01	1.901	14.48	0.65	6.8	92.4	0.8	-2.52	2.01	0.62	0.81	1.38	125665	6450	45	3482	0	0	0	logfile
✔	7LiV	23386	2021-11-06	2021-01-28	3.6	3.63	—	3.6	0.009	0.95	1.0	0.05	13.49	0.01	1.080	26.89	2.97	4.9	94.5	0.6	-3.03	0.24	0.49	0.16	3.6	0.005	0.85	0.0	0.04	17.29	0.01	2.123	13.29	0.52	5.2	94.8	0.0	-0.81	1.76	0.40	0.83	1.67	47058	5903	12	0	0	0	0	logfile
✘	5L3P	4001	2021-11-08	2016-05-24	3.7	4.66	—	16.0	0.006	0.60	0.0	0.19	12.42	0.02	2.115	7.18	0.00	8.2	89.4	2.4	-1.95	0.44	0.11	0.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	149606	6419	58	4704	76	0	0	logfile

• ← previous
• Page 4 of 307
• next →