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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5AJ0 | 2875 | 2022-04-21 | 2015-02-19 | 3.5 | 11.12 | — | — | 0.011 | 1.61 | 31.0 | 0.09 | 16.14 | 0.01 | 0.414 | 42.84 | 8.00 | 5.7 | 89.8 | 4.5 | 0.77 | 0.00 | 0.00 | 0.09 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 218559 | 11738 | 106 | 5776 | 355 | 0 | 0 | logfile |
✔ | 6QoZ | 4610 | 2022-04-06 | 2019-02-13 | 3.4 | 3.65 | 3.13 | 3.5 | 0.011 | 1.46 | 4.0 | 0.09 | 15.40 | 0.01 | 1.243 | 4.20 | 5.13 | 6.0 | 93.1 | 0.9 | -3.28 | 0.40 | 0.62 | 0.09 | 3.5 | 0.004 | 0.69 | 0.0 | 0.04 | 15.42 | 0.00 | 2.116 | 7.77 | 0.45 | 3.9 | 96.1 | 0.0 | -1.60 | 1.88 | 0.49 | 0.87 | 3.19 | 17987 | 2307 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 6QS6 | 4624 | 2022-04-07 | 2019-02-20 | 3.9 | 4.03 | 2.44 | 4.0 | 0.011 | 1.09 | 0.0 | 0.06 | 10.53 | 0.01 | 2.187 | 6.85 | 0.07 | 8.2 | 91.8 | 0.0 | -4.07 | 0.57 | 0.46 | 0.09 | 3.9 | 0.008 | 1.00 | 0.0 | 0.05 | 16.70 | 0.01 | 1.671 | 22.69 | 0.24 | 5.3 | 94.7 | 0.0 | -0.66 | 1.50 | 0.74 | 0.76 | 0.91 | 28557 | 3568 | 13 | 0 | 35 | 0 | 0 | logfile |
✔ | 7RTV | 24690 | 2022-04-04 | 2021-08-15 | 3.96 | 4.06 | — | 4.1 | 0.003 | 0.68 | 0.0 | 0.04 | 16.49 | 0.00 | 2.207 | 14.04 | 0.32 | 2.8 | 97.2 | 0.0 | 3.61 | 0.41 | 0.63 | 0.10 | 4.1 | 0.004 | 0.87 | 0.0 | 0.05 | 18.50 | 0.00 | 2.197 | 15.60 | 0.32 | 3.0 | 97.0 | 0.0 | 2.57 | 0.49 | 0.42 | 0.64 | 0.60 | 2881 | 366 | 3 | 0 | 6 | 0 | 0 | logfile |
✔ | 5ZYA | 6915 | 2022-04-06 | 2018-05-23 | 3.95 | 4.18 | — | 4.1 | 0.009 | 1.35 | 0.0 | 0.16 | 11.13 | 0.01 | 1.673 | 8.53 | 0.32 | 9.6 | 90.4 | 0.0 | -4.57 | 0.67 | 0.52 | 0.10 | 4.0 | 0.005 | 0.98 | 0.0 | 0.06 | 15.68 | 0.01 | 2.095 | 20.42 | 0.54 | 8.4 | 91.6 | 0.0 | -2.27 | 1.80 | 0.77 | 0.73 | 1.15 | 16957 | 2143 | 7 | 0 | 5 | 0 | 0 | logfile |
✔ | 7EGC | 31112 | 2022-04-05 | 2021-03-24 | 3.9 | 3.72 | — | 4.9 | 0.008 | 1.13 | 76.0 | 0.08 | 15.44 | 0.01 | 1.402 | 24.29 | 3.39 | 7.3 | 91.9 | 0.8 | -3.59 | 0.43 | 0.10 | 0.10 | 3.1 | 0.006 | 0.91 | 1.0 | 0.05 | 16.75 | 0.01 | 1.954 | 17.35 | 0.48 | 6.4 | 93.4 | 0.2 | -0.89 | 1.24 | 0.51 | 0.32 | 0.53 | 113129 | 13879 | 63 | 142 | 18 | 0 | 0 | logfile |
✔ | 6MDP | 9103 | 2022-04-09 | 2018-09-04 | 3.8 | 5.39 | — | 4.1 | 0.009 | 1.42 | 0.0 | 0.17 | 12.33 | 0.01 | 2.016 | 5.27 | 0.33 | 2.4 | 97.5 | 0.1 | -3.57 | 0.80 | 0.67 | 0.10 | 4.2 | 0.003 | 0.79 | 0.0 | 0.15 | 13.26 | 0.00 | 1.963 | 14.52 | 0.08 | 7.1 | 92.9 | 0.0 | -1.30 | 0.73 | 0.89 | 0.84 | 0.44 | 45210 | 2832 | 13 | 0 | 11 | 0 | 22777 | logfile |
✔ | 6oUo | 20204 | 2022-04-11 | 2019-05-05 | 3.7 | 4.99 | — | 3.3 | 0.007 | 0.83 | 1.0 | 0.04 | 15.93 | 0.02 | 1.584 | 12.05 | 0.36 | 5.1 | 94.8 | 0.1 | -3.86 | 0.89 | 0.75 | 0.10 | 3.3 | 0.005 | 0.82 | 0.0 | 0.04 | 17.39 | 0.01 | 1.824 | 40.64 | 1.09 | 6.8 | 93.1 | 0.0 | -1.93 | 2.64 | 0.92 | 0.84 | 0.40 | 146867 | 6028 | 61 | 4642 | 14 | 0 | 0 | logfile |
✔ | 5ZEP | 6921 | 2022-04-14 | 2018-02-27 | 3.4 | 5.11 | — | 4.5 | 0.010 | 1.18 | 5.0 | 0.06 | 16.72 | 0.01 | 1.089 | 21.17 | 3.06 | 8.5 | 90.3 | 1.3 | -3.96 | 0.70 | 0.53 | 0.11 | 4.5 | 0.005 | 0.79 | 1.0 | 0.04 | 17.96 | 0.01 | 1.949 | 28.28 | 0.79 | 7.6 | 92.2 | 0.2 | -1.82 | 1.67 | 0.90 | 0.86 | 0.20 | 152451 | 6193 | 58 | 4802 | 262 | 0 | 0 | logfile |
✔ | 6CXC | 7774 | 2022-04-05 | 2018-04-02 | 3.9 | 4.14 | — | 4.0 | 0.006 | 1.02 | 0.0 | 0.06 | 10.95 | 0.01 | 2.198 | 9.05 | 0.29 | 6.2 | 93.8 | 0.0 | -4.06 | 0.71 | 0.71 | 0.12 | 4.0 | 0.004 | 0.82 | 0.0 | 0.05 | 16.06 | 0.01 | 2.124 | 22.31 | 0.57 | 6.5 | 93.5 | 0.0 | -2.33 | 2.15 | 0.73 | 0.77 | -0.17 | 15196 | 1945 | 18 | 0 | 6 | 0 | 0 | logfile |
✔ | 7A24 | 11615 | 2022-04-09 | 2020-08-16 | 3.8 | 3.92 | — | 3.8 | 0.009 | 1.16 | 33.0 | 1.08 | 14.94 | 0.01 | 0.850 | 22.86 | 2.62 | 9.6 | 90.1 | 0.3 | -3.10 | 0.53 | 0.47 | 0.12 | 3.8 | 0.012 | 1.91 | 2.0 | 0.33 | 17.47 | 0.01 | 1.886 | 28.46 | 0.47 | 8.5 | 91.4 | 0.1 | -2.11 | 1.61 | 0.59 | 0.59 | 0.19 | 49497 | 6253 | 46 | 0 | 17 | 0 | 0 | logfile |
✔ | 6W7M | 21571 | 2022-04-09 | 2020-03-19 | 3.8 | 3.72 | — | 3.6 | 0.002 | 0.58 | 0.0 | 0.03 | 16.56 | 0.00 | 2.031 | 14.77 | 0.10 | 7.4 | 92.3 | 0.3 | -3.67 | 0.68 | 0.56 | 0.12 | 3.6 | 0.009 | 1.11 | 2.0 | 0.05 | 18.82 | 0.01 | 1.977 | 32.67 | 0.89 | 14.0 | 85.7 | 0.4 | -3.21 | 1.33 | 0.72 | 0.62 | 0.56 | 50694 | 2319 | 20 | 1512 | 0 | 0 | 0 | logfile |
✔ | 7APK | 11857 | 2022-04-07 | 2020-10-17 | 3.3 | 3.26 | — | 3.5 | 0.004 | 0.81 | 0.0 | 0.05 | 8.50 | 0.01 | 2.256 | 3.98 | 0.10 | 4.7 | 95.2 | 0.1 | -2.73 | 0.41 | 0.22 | 0.13 | 2.9 | 0.007 | 0.84 | 1.0 | 0.04 | 12.90 | 0.00 | 1.695 | 13.78 | 0.09 | 5.7 | 94.1 | 0.1 | 1.02 | 1.04 | 0.49 | 0.42 | 0.88 | 72697 | 9893 | 30 | 0 | 74 | 0 | 0 | logfile |
✔ | 7EGB | 31111 | 2022-04-05 | 2021-03-24 | 3.3 | 3.51 | — | 34.0 | 0.008 | 1.11 | 62.0 | 0.07 | 15.42 | 0.01 | 1.322 | 21.10 | 3.22 | 7.3 | 91.9 | 0.8 | -3.64 | 0.32 | 0.02 | 0.13 | 3.0 | 0.012 | 1.17 | 5.0 | 0.06 | 16.92 | 0.01 | 1.750 | 23.60 | 0.45 | 8.5 | 91.3 | 0.2 | -1.54 | 1.12 | 0.42 | 0.21 | 0.07 | 113098 | 13887 | 63 | 138 | 18 | 0 | 0 | logfile |
✔ | 7CQ7 | 30438 | 2022-04-05 | 2020-08-08 | 3.55 | 3.95 | — | 4.0 | 0.008 | 1.07 | 0.0 | 0.06 | 10.32 | 0.01 | 1.915 | 5.80 | 0.07 | 9.3 | 90.7 | 0.0 | -4.47 | 0.39 | 0.42 | 0.13 | 3.9 | 0.010 | 1.18 | 0.0 | 0.04 | 15.42 | 0.01 | 1.619 | 18.96 | 0.40 | 7.6 | 92.4 | 0.0 | -1.16 | 1.35 | 0.51 | 0.68 | 0.15 | 13810 | 1766 | 8 | 0 | 9 | 0 | 0 | logfile |
✘ | 7A5K | 11646 | 2022-04-11 | 2020-08-21 | 3.7 | 3.12 | 3.69 | 40.0 | 0.014 | 1.28 | 3.0 | 0.06 | 17.54 | 0.01 | 1.211 | 7.11 | 0.05 | 10.7 | 88.9 | 0.3 | -4.20 | 0.03 | 0.00 | 0.14 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 171126 | 14163 | 108 | 2644 | 165 | 0 | 0 | logfile |
✔ | 6S13 | 10079 | 2022-04-26 | 2019-06-18 | 3.58 | 3.67 | — | 5.8 | 0.023 | 1.27 | 2.0 | 0.06 | 22.26 | 0.01 | 1.596 | 18.79 | 21.29 | 20.5 | 79.4 | 0.1 | -5.98 | 0.56 | 0.28 | 0.14 | 3.6 | 0.015 | 1.16 | 3.0 | 0.05 | 22.20 | 0.01 | 1.263 | 42.49 | 1.19 | 20.3 | 79.7 | 0.0 | -4.72 | 2.08 | 0.63 | 0.50 | 0.54 | 233957 | 5608 | 52 | 4559 | 0 | 0 | 93218 | logfile |
✔ | 3J9Z | 6315 | 2022-04-16 | 2015-03-27 | 3.6 | 3.80 | — | 3.7 | 0.017 | 2.31 | 171.0 | 0.16 | 18.21 | 0.04 | 2.267 | 1.72 | 3.84 | 7.6 | 89.1 | 3.3 | -2.82 | 0.56 | 0.39 | 0.14 | 3.7 | 0.003 | 0.72 | 0.0 | 0.04 | 16.87 | 0.01 | 1.985 | 16.97 | 0.79 | 9.1 | 90.4 | 0.6 | -2.02 | 2.20 | 0.84 | 0.82 | 0.86 | 156714 | 7125 | 59 | 4717 | 1 | 0 | 0 | logfile |
✔ | 6RAW | 4785 | 2022-04-09 | 2019-04-08 | 3.7 | 3.80 | 3.66 | 4.1 | 0.007 | 1.29 | 19.0 | 0.13 | 18.21 | 0.01 | 1.198 | 17.62 | 6.37 | 18.9 | 80.8 | 0.3 | -5.55 | 0.47 | 0.49 | 0.14 | 3.8 | 0.009 | 1.10 | 0.0 | 0.05 | 18.64 | 0.01 | 1.676 | 16.41 | 0.40 | 11.5 | 88.5 | 0.0 | -3.15 | 3.99 | 0.58 | 0.62 | 0.41 | 39710 | 4877 | 18 | 39 | 6 | 0 | 0 | logfile |
✔ | 5X59 | 6704 | 2022-04-07 | 2017-02-15 | 3.7 | 3.77 | — | 3.7 | 0.011 | 1.65 | 0.0 | 0.08 | 14.81 | 0.01 | 1.477 | 23.24 | 4.97 | 13.2 | 85.4 | 1.3 | -3.87 | 0.48 | 0.41 | 0.15 | 3.7 | 0.011 | 1.41 | 1.0 | 0.05 | 15.52 | 0.01 | 1.647 | 29.17 | 0.27 | 13.3 | 86.4 | 0.3 | -2.68 | 0.93 | 0.55 | 0.56 | 0.87 | 26838 | 3423 | 6 | 0 | 30 | 0 | 0 | logfile |