Table showing results for April 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	5AJ0	2875	2022-04-21	2015-02-19	3.5	11.12	—	—	0.011	1.61	31.0	0.09	16.14	0.01	0.414	42.84	8.00	5.7	89.8	4.5	0.77	0.00	0.00	0.09	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	218559	11738	106	5776	355	0	0	logfile
✔	6QoZ	4610	2022-04-06	2019-02-13	3.4	3.65	3.13	3.5	0.011	1.46	4.0	0.09	15.40	0.01	1.243	4.20	5.13	6.0	93.1	0.9	-3.28	0.40	0.62	0.09	3.5	0.004	0.69	0.0	0.04	15.42	0.00	2.116	7.77	0.45	3.9	96.1	0.0	-1.60	1.88	0.49	0.87	3.19	17987	2307	9	0	0	0	0	logfile
✔	6QS6	4624	2022-04-07	2019-02-20	3.9	4.03	2.44	4.0	0.011	1.09	0.0	0.06	10.53	0.01	2.187	6.85	0.07	8.2	91.8	0.0	-4.07	0.57	0.46	0.09	3.9	0.008	1.00	0.0	0.05	16.70	0.01	1.671	22.69	0.24	5.3	94.7	0.0	-0.66	1.50	0.74	0.76	0.91	28557	3568	13	0	35	0	0	logfile
✔	7RTV	24690	2022-04-04	2021-08-15	3.96	4.06	—	4.1	0.003	0.68	0.0	0.04	16.49	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.004	0.87	0.0	0.05	18.50	0.00	2.197	15.60	0.32	3.0	97.0	0.0	2.57	0.49	0.42	0.64	0.60	2881	366	3	0	6	0	0	logfile
✔	5ZYA	6915	2022-04-06	2018-05-23	3.95	4.18	—	4.1	0.009	1.35	0.0	0.16	11.13	0.01	1.673	8.53	0.32	9.6	90.4	0.0	-4.57	0.67	0.52	0.10	4.0	0.005	0.98	0.0	0.06	15.68	0.01	2.095	20.42	0.54	8.4	91.6	0.0	-2.27	1.80	0.77	0.73	1.15	16957	2143	7	0	5	0	0	logfile
✔	7EGC	31112	2022-04-05	2021-03-24	3.9	3.72	—	4.9	0.008	1.13	76.0	0.08	15.44	0.01	1.402	24.29	3.39	7.3	91.9	0.8	-3.59	0.43	0.10	0.10	3.1	0.006	0.91	1.0	0.05	16.75	0.01	1.954	17.35	0.48	6.4	93.4	0.2	-0.89	1.24	0.51	0.32	0.53	113129	13879	63	142	18	0	0	logfile
✔	6MDP	9103	2022-04-09	2018-09-04	3.8	5.39	—	4.1	0.009	1.42	0.0	0.17	12.33	0.01	2.016	5.27	0.33	2.4	97.5	0.1	-3.57	0.80	0.67	0.10	4.2	0.003	0.79	0.0	0.15	13.26	0.00	1.963	14.52	0.08	7.1	92.9	0.0	-1.30	0.73	0.89	0.84	0.44	45210	2832	13	0	11	0	22777	logfile
✔	6oUo	20204	2022-04-11	2019-05-05	3.7	4.99	—	3.3	0.007	0.83	1.0	0.04	15.93	0.02	1.584	12.05	0.36	5.1	94.8	0.1	-3.86	0.89	0.75	0.10	3.3	0.005	0.82	0.0	0.04	17.39	0.01	1.824	40.64	1.09	6.8	93.1	0.0	-1.93	2.64	0.92	0.84	0.40	146867	6028	61	4642	14	0	0	logfile
✔	5ZEP	6921	2022-04-14	2018-02-27	3.4	5.11	—	4.5	0.010	1.18	5.0	0.06	16.72	0.01	1.089	21.17	3.06	8.5	90.3	1.3	-3.96	0.70	0.53	0.11	4.5	0.005	0.79	1.0	0.04	17.96	0.01	1.949	28.28	0.79	7.6	92.2	0.2	-1.82	1.67	0.90	0.86	0.20	152451	6193	58	4802	262	0	0	logfile
✔	6CXC	7774	2022-04-05	2018-04-02	3.9	4.14	—	4.0	0.006	1.02	0.0	0.06	10.95	0.01	2.198	9.05	0.29	6.2	93.8	0.0	-4.06	0.71	0.71	0.12	4.0	0.004	0.82	0.0	0.05	16.06	0.01	2.124	22.31	0.57	6.5	93.5	0.0	-2.33	2.15	0.73	0.77	-0.17	15196	1945	18	0	6	0	0	logfile
✔	7A24	11615	2022-04-09	2020-08-16	3.8	3.92	—	3.8	0.009	1.16	33.0	1.08	14.94	0.01	0.850	22.86	2.62	9.6	90.1	0.3	-3.10	0.53	0.47	0.12	3.8	0.012	1.91	2.0	0.33	17.47	0.01	1.886	28.46	0.47	8.5	91.4	0.1	-2.11	1.61	0.59	0.59	0.19	49497	6253	46	0	17	0	0	logfile
✔	6W7M	21571	2022-04-09	2020-03-19	3.8	3.72	—	3.6	0.002	0.58	0.0	0.03	16.56	0.00	2.031	14.77	0.10	7.4	92.3	0.3	-3.67	0.68	0.56	0.12	3.6	0.009	1.11	2.0	0.05	18.82	0.01	1.977	32.67	0.89	14.0	85.7	0.4	-3.21	1.33	0.72	0.62	0.56	50694	2319	20	1512	0	0	0	logfile
✔	7APK	11857	2022-04-07	2020-10-17	3.3	3.26	—	3.5	0.004	0.81	0.0	0.05	8.50	0.01	2.256	3.98	0.10	4.7	95.2	0.1	-2.73	0.41	0.22	0.13	2.9	0.007	0.84	1.0	0.04	12.90	0.00	1.695	13.78	0.09	5.7	94.1	0.1	1.02	1.04	0.49	0.42	0.88	72697	9893	30	0	74	0	0	logfile
✔	7EGB	31111	2022-04-05	2021-03-24	3.3	3.51	—	34.0	0.008	1.11	62.0	0.07	15.42	0.01	1.322	21.10	3.22	7.3	91.9	0.8	-3.64	0.32	0.02	0.13	3.0	0.012	1.17	5.0	0.06	16.92	0.01	1.750	23.60	0.45	8.5	91.3	0.2	-1.54	1.12	0.42	0.21	0.07	113098	13887	63	138	18	0	0	logfile
✔	7CQ7	30438	2022-04-05	2020-08-08	3.55	3.95	—	4.0	0.008	1.07	0.0	0.06	10.32	0.01	1.915	5.80	0.07	9.3	90.7	0.0	-4.47	0.39	0.42	0.13	3.9	0.010	1.18	0.0	0.04	15.42	0.01	1.619	18.96	0.40	7.6	92.4	0.0	-1.16	1.35	0.51	0.68	0.15	13810	1766	8	0	9	0	0	logfile
✘	7A5K	11646	2022-04-11	2020-08-21	3.7	3.12	3.69	40.0	0.014	1.28	3.0	0.06	17.54	0.01	1.211	7.11	0.05	10.7	88.9	0.3	-4.20	0.03	0.00	0.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	171126	14163	108	2644	165	0	0	logfile
✔	6S13	10079	2022-04-26	2019-06-18	3.58	3.67	—	5.8	0.023	1.27	2.0	0.06	22.26	0.01	1.596	18.79	21.29	20.5	79.4	0.1	-5.98	0.56	0.28	0.14	3.6	0.015	1.16	3.0	0.05	22.20	0.01	1.263	42.49	1.19	20.3	79.7	0.0	-4.72	2.08	0.63	0.50	0.54	233957	5608	52	4559	0	0	93218	logfile
✔	3J9Z	6315	2022-04-16	2015-03-27	3.6	3.80	—	3.7	0.017	2.31	171.0	0.16	18.21	0.04	2.267	1.72	3.84	7.6	89.1	3.3	-2.82	0.56	0.39	0.14	3.7	0.003	0.72	0.0	0.04	16.87	0.01	1.985	16.97	0.79	9.1	90.4	0.6	-2.02	2.20	0.84	0.82	0.86	156714	7125	59	4717	1	0	0	logfile
✔	6RAW	4785	2022-04-09	2019-04-08	3.7	3.80	3.66	4.1	0.007	1.29	19.0	0.13	18.21	0.01	1.198	17.62	6.37	18.9	80.8	0.3	-5.55	0.47	0.49	0.14	3.8	0.009	1.10	0.0	0.05	18.64	0.01	1.676	16.41	0.40	11.5	88.5	0.0	-3.15	3.99	0.58	0.62	0.41	39710	4877	18	39	6	0	0	logfile
✔	5X59	6704	2022-04-07	2017-02-15	3.7	3.77	—	3.7	0.011	1.65	0.0	0.08	14.81	0.01	1.477	23.24	4.97	13.2	85.4	1.3	-3.87	0.48	0.41	0.15	3.7	0.011	1.41	1.0	0.05	15.52	0.01	1.647	29.17	0.27	13.3	86.4	0.3	-2.68	0.93	0.55	0.56	0.87	26838	3423	6	0	30	0	0	logfile

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