Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6SSK	10296	2022-07-11	2019-09-08	3.18	3.64	—	3.6	0.008	0.88	10.0	0.06	14.40	0.01	1.561	4.60	0.18	3.5	96.2	0.3	-4.85	0.57	0.57	0.07	3.6	0.004	0.72	0.0	0.04	16.93	0.01	2.101	9.14	0.39	2.8	97.2	0.0	-0.23	1.36	0.73	0.86	1.58	155900	19870	90	0	0	0	0	logfile
✔	6NEQ	9358	2022-07-04	2018-12-18	3.32	3.85	—	3.5	0.001	0.37	0.0	0.03	12.81	0.00	1.949	3.35	0.35	10.3	88.1	1.6	-2.42	0.69	0.51	0.07	3.5	0.004	0.68	0.0	0.04	16.24	0.01	2.099	13.08	0.35	5.3	94.6	0.1	-0.32	1.93	0.84	0.84	1.44	65776	5509	32	952	147	0	0	logfile
✔	6QoZ	4610	2022-07-04	2019-02-13	3.4	3.65	3.13	3.5	0.011	1.46	4.0	0.09	15.40	0.01	1.243	4.20	5.13	6.0	93.1	0.9	-3.28	0.40	0.62	0.09	3.5	0.004	0.69	0.0	0.04	15.42	0.00	2.116	7.86	0.45	3.9	96.1	0.0	-1.60	1.88	0.49	0.87	3.19	17987	2307	9	0	0	0	0	logfile
✔	6QS6	4624	2022-07-06	2019-02-20	3.9	4.03	2.44	4.0	0.011	1.09	0.0	0.06	10.53	0.01	2.187	6.85	0.07	8.2	91.8	0.0	-4.07	0.57	0.46	0.09	3.9	0.008	1.00	0.0	0.05	16.70	0.01	1.671	22.83	0.24	5.3	94.7	0.0	-0.66	1.50	0.74	0.76	0.91	28557	3568	13	0	35	0	0	logfile
✔	6MDP	9103	2022-07-07	2018-09-04	3.8	5.39	—	4.1	0.009	1.42	0.0	0.17	12.33	0.01	2.016	5.29	0.33	2.4	97.5	0.1	-3.57	0.80	0.67	0.10	4.2	0.003	0.79	0.0	0.15	13.26	0.00	1.963	14.56	0.08	7.1	92.9	0.0	-1.30	0.73	0.89	0.84	0.44	45210	2832	13	0	11	0	22777	logfile
✘	6oUo	20204	2022-07-08	2019-05-05	3.7	4.99	—	3.3	0.007	0.83	1.0	0.04	15.83	0.01	1.177	12.14	0.36	5.1	94.8	0.1	-3.86	0.89	0.75	0.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	146867	6028	61	4642	14	0	0	logfile
✘	5ZYA	6915	2022-07-04	2018-05-23	3.95	4.18	—	4.1	0.008	1.17	0.0	0.06	10.63	0.01	1.223	8.56	0.32	9.6	90.4	0.0	-4.57	0.67	0.52	0.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16957	2143	7	0	5	0	0	logfile
✔	7RTV	24690	2022-07-02	2021-08-15	3.96	4.06	—	4.1	0.003	0.68	0.0	0.04	16.49	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.004	0.87	0.0	0.05	18.50	0.00	2.197	15.77	0.32	3.0	97.0	0.0	2.57	0.49	0.42	0.64	0.60	2881	366	3	0	6	0	0	logfile
✔	7EGC	31112	2022-07-03	2021-03-24	3.9	3.72	—	4.9	0.008	1.13	76.0	0.08	15.44	0.01	1.402	24.43	3.39	7.3	91.9	0.8	-3.59	0.43	0.10	0.10	3.1	0.007	0.98	3.0	0.05	16.83	0.01	1.653	22.01	0.21	6.5	93.2	0.3	-1.36	1.21	0.51	0.31	0.43	113129	13879	63	142	18	0	0	logfile
✘	5ZEP	6921	2022-07-10	2018-02-27	3.4	5.11	—	4.5	0.010	1.18	5.0	0.06	16.72	0.01	1.089	21.21	3.06	8.5	90.3	1.3	-3.96	0.70	0.53	0.11	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	152451	6193	58	4802	262	0	0	logfile
✔	6CXC	7774	2022-07-04	2018-04-02	3.9	4.14	—	4.0	0.006	1.02	0.0	0.06	10.95	0.01	2.198	9.05	0.29	6.2	93.8	0.0	-4.06	0.71	0.71	0.12	4.0	0.004	0.82	0.0	0.05	16.06	0.01	2.124	22.38	0.57	6.5	93.5	0.0	-2.33	2.15	0.73	0.77	-0.17	15196	1945	18	0	6	0	0	logfile
✔	6W7M	21571	2022-07-08	2020-03-19	3.8	3.72	—	3.6	0.002	0.58	0.0	0.03	16.56	0.00	2.031	14.83	0.10	7.4	92.3	0.3	-3.67	0.68	0.56	0.12	3.6	0.009	1.11	2.0	0.05	18.82	0.01	1.977	32.75	0.89	14.0	85.7	0.4	-3.21	1.33	0.72	0.62	0.56	50694	2319	20	1512	0	0	0	logfile
✔	7A24	11615	2022-07-08	2020-08-16	3.8	3.92	—	3.8	0.009	1.16	33.0	1.08	14.94	0.01	0.850	22.94	2.62	9.6	90.1	0.3	-3.10	0.53	0.47	0.12	3.8	0.012	1.91	2.0	0.33	17.47	0.01	1.886	28.62	0.47	8.5	91.4	0.1	-2.11	1.61	0.59	0.59	0.19	49497	6253	46	0	17	0	0	logfile
✔	7EGB	31111	2022-07-03	2021-03-24	3.3	3.51	—	34.0	0.008	1.11	62.0	0.07	15.42	0.01	1.322	21.23	3.22	7.3	91.9	0.8	-3.64	0.32	0.02	0.13	10.0	0.008	1.04	2.0	0.05	16.80	0.01	1.824	19.80	0.45	7.8	92.0	0.2	-1.26	1.09	0.41	0.19	0.15	113098	13887	63	138	18	0	0	logfile
✔	7APK	11857	2022-07-04	2020-10-17	3.3	3.26	—	3.5	0.004	0.81	0.0	0.05	8.50	0.01	2.256	4.14	0.10	4.7	95.2	0.1	-2.73	0.41	0.22	0.13	2.9	0.007	0.84	1.0	0.04	12.90	0.00	1.695	14.03	0.09	5.7	94.1	0.1	1.02	1.04	0.49	0.42	0.88	72697	9893	30	0	74	0	0	logfile
✔	7o7R	12754	2022-07-07	2021-04-13	3.9	4.51	—	4.3	0.013	1.32	8.0	0.07	16.26	0.01	1.912	21.03	1.07	18.3	81.4	0.3	-5.78	0.83	0.75	0.13	4.3	0.007	1.05	1.0	0.05	17.18	0.01	1.930	21.53	0.74	10.2	89.7	0.1	-3.28	0.86	0.83	0.75	0.30	40530	5126	16	0	40	0	0	logfile
✔	7CQ7	30438	2022-07-04	2020-08-08	3.55	3.95	—	4.0	0.008	1.07	0.0	0.06	10.32	0.01	1.915	5.84	0.07	9.3	90.7	0.0	-4.47	0.39	0.42	0.13	3.9	0.010	1.18	0.0	0.04	15.42	0.01	1.619	19.03	0.40	7.6	92.4	0.0	-1.16	1.35	0.51	0.68	0.15	13810	1766	8	0	9	0	0	logfile
✔	6RAW	4785	2022-07-07	2019-04-08	3.7	3.80	3.66	4.1	0.007	1.29	19.0	0.13	18.21	0.01	1.198	17.64	6.37	18.9	80.8	0.3	-5.55	0.47	0.49	0.14	3.8	0.009	1.10	0.0	0.05	18.64	0.01	1.676	16.49	0.40	11.5	88.5	0.0	-3.15	3.99	0.58	0.62	0.41	39710	4877	18	39	6	0	0	logfile
✔	3J9Z	6315	2022-07-11	2015-03-27	3.6	3.80	—	3.7	0.017	2.31	171.0	0.16	18.21	0.04	2.267	1.82	3.84	7.6	89.1	3.3	-2.82	0.56	0.39	0.14	3.7	0.004	0.75	0.0	0.04	16.94	0.01	1.973	17.63	1.04	9.2	90.2	0.6	-2.13	2.20	0.84	0.83	1.02	156714	7125	59	4717	1	0	0	logfile
✔	7RTU	24689	2022-07-03	2021-08-15	3.89	4.06	—	4.1	0.003	0.51	0.0	0.04	14.84	0.00	2.175	7.11	0.16	3.1	96.9	0.0	4.32	0.55	0.69	0.15	4.1	0.003	0.52	0.0	0.04	16.76	0.00	2.223	7.20	0.47	2.5	97.5	0.0	4.38	0.29	0.61	0.71	0.38	5962	754	6	0	12	0	0	logfile

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