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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6QS6 | 4624 | 2022-12-16 | 2019-02-20 | 3.9 | 4.03 | 2.44 | 4.0 | 0.011 | 1.09 | 0.0 | 0.06 | 10.53 | 0.01 | 2.187 | 6.85 | 0.07 | 8.2 | 91.8 | 0.0 | -4.07 | 0.57 | 0.46 | 0.09 | 3.9 | 0.004 | 0.86 | 0.0 | 0.05 | 16.70 | 0.00 | 2.076 | 21.09 | 0.71 | 5.1 | 94.9 | 0.0 | -0.72 | 1.39 | 0.75 | 0.78 | 0.89 | 28557 | 3568 | 13 | 0 | 35 | 0 | 0 | logfile |
✘ | 7WTD | 32779 | 2022-12-18 | 2022-02-04 | 3.9 | 5.03 | — | 4.3 | 0.004 | 0.75 | 1.0 | 0.05 | 14.34 | 0.00 | 0.990 | 19.98 | 1.15 | 7.3 | 92.6 | 0.1 | -0.88 | 0.81 | 0.61 | 0.10 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 27137 | 3491 | 6 | 0 | 4 | 0 | 0 | logfile |
✔ | 5ZYA | 6915 | 2022-12-13 | 2018-05-23 | 3.95 | 4.18 | — | 4.1 | 0.009 | 1.35 | 0.0 | 0.16 | 11.13 | 0.01 | 1.673 | 8.56 | 0.32 | 9.6 | 90.4 | 0.0 | -4.57 | 0.67 | 0.52 | 0.10 | 4.0 | 0.004 | 0.93 | 0.0 | 0.06 | 15.42 | 0.00 | 2.068 | 17.86 | 0.54 | 7.2 | 92.8 | 0.0 | -2.06 | 1.81 | 0.77 | 0.72 | 1.15 | 16957 | 2143 | 7 | 0 | 5 | 0 | 0 | logfile |
✔ | 6MDP | 9103 | 2022-12-21 | 2018-09-04 | 3.8 | 5.39 | — | 4.1 | 0.009 | 1.42 | 0.0 | 0.17 | 12.33 | 0.01 | 2.016 | 5.29 | 0.33 | 2.4 | 97.5 | 0.1 | -3.57 | 0.80 | 0.67 | 0.10 | 4.2 | 0.003 | 0.79 | 0.0 | 0.15 | 13.26 | 0.00 | 1.963 | 14.56 | 0.08 | 7.1 | 92.9 | 0.0 | -1.30 | 0.73 | 0.89 | 0.84 | 0.44 | 45210 | 2832 | 13 | 0 | 11 | 0 | 22777 | logfile |
✔ | 7RTV | 24690 | 2022-12-11 | 2021-08-15 | 3.96 | 4.06 | — | 4.1 | 0.003 | 0.68 | 0.0 | 0.04 | 16.49 | 0.00 | 2.207 | 14.04 | 0.32 | 2.8 | 97.2 | 0.0 | 3.61 | 0.41 | 0.63 | 0.10 | 4.1 | 0.004 | 0.87 | 0.0 | 0.04 | 18.39 | 0.00 | 2.192 | 15.77 | 0.00 | 2.5 | 97.5 | 0.0 | 3.10 | 0.49 | 0.42 | 0.64 | -0.08 | 2881 | 366 | 3 | 0 | 6 | 0 | 0 | logfile |
✔ | 7TAX | 25789 | 2022-12-16 | 2021-12-21 | 2.8 | 3.31 | — | 3.3 | 0.003 | 0.67 | 0.0 | 0.04 | 15.14 | 0.01 | 2.236 | 6.51 | 0.00 | 4.6 | 95.4 | 0.0 | -0.99 | 0.64 | 0.56 | 0.11 | 3.2 | 0.003 | 0.68 | 0.0 | 0.04 | 17.62 | 0.00 | 2.109 | 12.44 | 2.26 | 5.3 | 94.7 | 0.0 | -0.04 | 1.24 | 0.78 | 0.85 | 2.55 | 27855 | 3349 | 14 | 99 | 0 | 0 | 0 | logfile |
✔ | 6CXC | 7774 | 2022-12-13 | 2018-04-02 | 3.9 | 4.14 | — | 4.0 | 0.006 | 1.02 | 0.0 | 0.06 | 10.95 | 0.01 | 2.198 | 9.05 | 0.29 | 6.2 | 93.8 | 0.0 | -4.06 | 0.71 | 0.71 | 0.12 | 4.0 | 0.010 | 1.12 | 0.0 | 0.06 | 16.31 | 0.01 | 1.904 | 40.02 | 1.15 | 10.8 | 89.2 | 0.0 | -2.78 | 2.15 | 0.72 | 0.75 | -0.10 | 15196 | 1945 | 18 | 0 | 6 | 0 | 0 | logfile |
✔ | 7A24 | 11615 | 2022-12-22 | 2020-08-16 | 3.8 | 3.92 | — | 3.8 | 0.009 | 1.16 | 33.0 | 1.08 | 14.94 | 0.01 | 0.850 | 24.02 | 2.62 | 9.6 | 90.1 | 0.3 | -3.10 | 0.53 | 0.47 | 0.12 | 3.8 | 0.009 | 1.78 | 0.0 | 0.33 | 17.20 | 0.01 | 1.780 | 29.68 | 0.64 | 8.3 | 91.6 | 0.1 | -2.10 | 1.19 | 0.59 | 0.59 | 0.49 | 49497 | 6253 | 46 | 0 | 17 | 0 | 0 | logfile |
✔ | 6W7M | 21571 | 2022-12-22 | 2020-03-19 | 3.8 | 3.72 | — | 3.6 | 0.002 | 0.58 | 0.0 | 0.03 | 16.56 | 0.00 | 2.031 | 14.83 | 0.10 | 7.4 | 92.3 | 0.3 | -3.67 | 0.68 | 0.56 | 0.12 | 3.6 | 0.003 | 0.74 | 0.0 | 0.04 | 18.06 | 0.01 | 2.049 | 23.10 | 0.89 | 11.3 | 88.5 | 0.3 | -2.41 | 1.33 | 0.71 | 0.61 | 0.43 | 50694 | 2319 | 20 | 1512 | 0 | 0 | 0 | logfile |
✔ | 7o7R | 12754 | 2022-12-20 | 2021-04-13 | 3.9 | 4.51 | — | 4.3 | 0.013 | 1.32 | 8.0 | 0.07 | 16.26 | 0.01 | 1.912 | 21.03 | 1.07 | 18.3 | 81.4 | 0.3 | -5.78 | 0.83 | 0.75 | 0.13 | 4.3 | 0.004 | 0.96 | 0.0 | 0.05 | 17.08 | 0.01 | 1.975 | 22.06 | 0.45 | 9.7 | 90.2 | 0.1 | -3.30 | 0.87 | 0.83 | 0.76 | 0.36 | 40530 | 5126 | 16 | 0 | 40 | 0 | 0 | logfile |
✔ | 7APK | 11857 | 2022-12-14 | 2020-10-17 | 3.3 | 3.26 | — | 3.5 | 0.004 | 0.81 | 0.0 | 0.05 | 8.50 | 0.01 | 2.256 | 4.14 | 0.10 | 4.7 | 95.2 | 0.1 | -2.73 | 0.41 | 0.22 | 0.13 | 2.9 | 0.005 | 0.75 | 0.0 | 0.04 | 12.98 | 0.00 | 2.104 | 13.12 | 0.18 | 6.2 | 93.7 | 0.1 | 1.08 | 1.15 | 0.50 | 0.44 | 1.00 | 72697 | 9893 | 30 | 0 | 74 | 0 | 0 | logfile |
✔ | 7CQ7 | 30438 | 2022-12-13 | 2020-08-08 | 3.55 | 3.95 | — | 4.0 | 0.008 | 1.07 | 0.0 | 0.06 | 10.32 | 0.01 | 1.915 | 5.84 | 0.07 | 9.3 | 90.7 | 0.0 | -4.47 | 0.39 | 0.42 | 0.13 | 3.9 | 0.003 | 0.85 | 0.0 | 0.04 | 15.09 | 0.00 | 2.105 | 13.99 | 0.54 | 6.9 | 93.1 | 0.0 | -0.82 | 1.30 | 0.50 | 0.68 | -0.06 | 13810 | 1766 | 8 | 0 | 9 | 0 | 0 | logfile |
✔ | 8ANE | 15540 | 2022-12-19 | 2022-08-05 | 3.2 | 2.95 | 3.14 | 3.2 | 0.003 | 0.64 | 0.0 | 0.04 | 15.69 | 0.01 | 2.198 | 3.37 | 0.93 | 4.6 | 95.4 | 0.0 | -1.93 | 0.55 | 0.43 | 0.13 | 3.1 | 0.005 | 0.79 | 0.0 | 0.04 | 17.82 | 0.01 | 1.758 | 13.64 | 0.60 | 8.4 | 91.6 | 0.0 | -1.96 | 2.69 | 0.66 | 0.65 | 1.36 | 36740 | 2212 | 8 | 66 | 0 | 0 | 18195 | logfile |
✔ | 8D6X | 27225 | 2022-12-14 | 2022-06-06 | 3.2 | 10.22 | — | — | 0.003 | 0.62 | 0.0 | 0.04 | 12.14 | 0.00 | 2.195 | 17.80 | 0.06 | 2.6 | 97.4 | 0.0 | 1.17 | 0.70 | 0.42 | 0.14 | — | 0.003 | 0.70 | 0.0 | 0.04 | 14.56 | 0.00 | 2.047 | 30.78 | 0.28 | 5.0 | 95.0 | 0.0 | 0.03 | 4.65 | 0.60 | 0.35 | 0.08 | 68362 | 8957 | 41 | 0 | 0 | 0 | 0 | logfile |
✔ | 6RAW | 4785 | 2022-12-20 | 2019-04-08 | 3.7 | 3.80 | 3.66 | 4.1 | 0.007 | 1.29 | 19.0 | 0.13 | 18.21 | 0.01 | 1.198 | 17.64 | 6.37 | 18.9 | 80.8 | 0.3 | -5.55 | 0.47 | 0.49 | 0.14 | 3.8 | 0.004 | 0.84 | 0.0 | 0.05 | 18.41 | 0.01 | 2.107 | 15.65 | 0.77 | 12.1 | 87.9 | 0.0 | -3.08 | 3.97 | 0.58 | 0.62 | 0.54 | 39710 | 4877 | 18 | 39 | 6 | 0 | 0 | logfile |
✔ | 7RTU | 24689 | 2022-12-11 | 2021-08-15 | 3.89 | 4.06 | — | 4.1 | 0.003 | 0.51 | 0.0 | 0.04 | 14.84 | 0.00 | 2.175 | 7.11 | 0.16 | 3.1 | 96.9 | 0.0 | 4.32 | 0.55 | 0.69 | 0.15 | 4.1 | 0.004 | 0.56 | 0.0 | 0.04 | 16.78 | 0.00 | 2.208 | 7.11 | 0.16 | 2.8 | 97.2 | 0.0 | 4.06 | 0.28 | 0.62 | 0.73 | 0.11 | 5962 | 754 | 6 | 0 | 12 | 0 | 0 | logfile |
✔ | 5X59 | 6704 | 2022-12-15 | 2017-02-15 | 3.7 | 3.77 | — | 3.7 | 0.011 | 1.65 | 0.0 | 0.08 | 14.81 | 0.01 | 1.477 | 23.41 | 4.97 | 13.2 | 85.4 | 1.3 | -3.87 | 0.48 | 0.41 | 0.15 | 3.7 | 0.004 | 1.05 | 0.0 | 0.05 | 15.67 | 0.01 | 2.059 | 19.91 | 0.21 | 12.7 | 87.1 | 0.2 | -2.29 | 1.26 | 0.60 | 0.64 | 1.20 | 26838 | 3423 | 6 | 0 | 30 | 0 | 0 | logfile |
✔ | 6H5i | 0140 | 2022-12-11 | 2018-07-24 | 3.9 | 3.87 | — | 23.0 | 0.006 | 0.81 | 0.0 | 0.05 | 10.47 | 0.01 | 2.196 | 2.64 | 0.17 | 4.3 | 95.7 | 0.0 | -1.74 | 0.29 | 0.06 | 0.15 | 3.8 | 0.003 | 0.70 | 0.0 | 0.04 | 15.15 | 0.00 | 2.076 | 14.87 | 0.34 | 4.1 | 95.9 | 0.0 | 1.09 | 1.96 | 0.38 | 0.25 | 0.14 | 43900 | 5392 | 26 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q5R | 13845 | 2022-12-17 | 2021-11-04 | 3.84 | 4.21 | 3.98 | 4.1 | 0.006 | 0.93 | 0.0 | 0.07 | 10.54 | 0.00 | 2.365 | 4.40 | 0.57 | 1.9 | 98.1 | 0.0 | 0.17 | 0.71 | 0.58 | 0.16 | 4.1 | 0.004 | 0.79 | 0.0 | 0.05 | 14.82 | 0.01 | 2.047 | 13.98 | 0.43 | 2.0 | 98.0 | 0.0 | 1.15 | 3.75 | 0.81 | 0.85 | 1.41 | 95520 | 12600 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 7LiV | 23386 | 2022-12-22 | 2021-01-28 | 3.6 | 3.63 | — | 3.6 | 0.009 | 0.95 | 1.0 | 0.05 | 13.49 | 0.01 | 1.080 | 27.01 | 2.97 | 4.9 | 94.5 | 0.6 | -3.03 | 0.24 | 0.49 | 0.16 | 3.6 | 0.005 | 0.85 | 0.0 | 0.05 | 17.32 | 0.01 | 2.038 | 15.21 | 1.12 | 6.1 | 93.9 | 0.1 | -1.34 | 1.79 | 0.39 | 0.82 | 1.44 | 47058 | 5903 | 12 | 0 | 0 | 0 | 0 | logfile |