Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6QS6	4624	2022-12-16	2019-02-20	3.9	4.03	2.44	4.0	0.011	1.09	0.0	0.06	10.53	0.01	2.187	6.85	0.07	8.2	91.8	0.0	-4.07	0.57	0.46	0.09	3.9	0.004	0.86	0.0	0.05	16.70	0.00	2.076	21.09	0.71	5.1	94.9	0.0	-0.72	1.39	0.75	0.78	0.89	28557	3568	13	0	35	0	0	logfile
✘	7WTD	32779	2022-12-18	2022-02-04	3.9	5.03	—	4.3	0.004	0.75	1.0	0.05	14.34	0.00	0.990	19.98	1.15	7.3	92.6	0.1	-0.88	0.81	0.61	0.10	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	27137	3491	6	0	4	0	0	logfile
✔	5ZYA	6915	2022-12-13	2018-05-23	3.95	4.18	—	4.1	0.009	1.35	0.0	0.16	11.13	0.01	1.673	8.56	0.32	9.6	90.4	0.0	-4.57	0.67	0.52	0.10	4.0	0.004	0.93	0.0	0.06	15.42	0.00	2.068	17.86	0.54	7.2	92.8	0.0	-2.06	1.81	0.77	0.72	1.15	16957	2143	7	0	5	0	0	logfile
✔	6MDP	9103	2022-12-21	2018-09-04	3.8	5.39	—	4.1	0.009	1.42	0.0	0.17	12.33	0.01	2.016	5.29	0.33	2.4	97.5	0.1	-3.57	0.80	0.67	0.10	4.2	0.003	0.79	0.0	0.15	13.26	0.00	1.963	14.56	0.08	7.1	92.9	0.0	-1.30	0.73	0.89	0.84	0.44	45210	2832	13	0	11	0	22777	logfile
✔	7RTV	24690	2022-12-11	2021-08-15	3.96	4.06	—	4.1	0.003	0.68	0.0	0.04	16.49	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.004	0.87	0.0	0.04	18.39	0.00	2.192	15.77	0.00	2.5	97.5	0.0	3.10	0.49	0.42	0.64	-0.08	2881	366	3	0	6	0	0	logfile
✔	7TAX	25789	2022-12-16	2021-12-21	2.8	3.31	—	3.3	0.003	0.67	0.0	0.04	15.14	0.01	2.236	6.51	0.00	4.6	95.4	0.0	-0.99	0.64	0.56	0.11	3.2	0.003	0.68	0.0	0.04	17.62	0.00	2.109	12.44	2.26	5.3	94.7	0.0	-0.04	1.24	0.78	0.85	2.55	27855	3349	14	99	0	0	0	logfile
✔	6CXC	7774	2022-12-13	2018-04-02	3.9	4.14	—	4.0	0.006	1.02	0.0	0.06	10.95	0.01	2.198	9.05	0.29	6.2	93.8	0.0	-4.06	0.71	0.71	0.12	4.0	0.010	1.12	0.0	0.06	16.31	0.01	1.904	40.02	1.15	10.8	89.2	0.0	-2.78	2.15	0.72	0.75	-0.10	15196	1945	18	0	6	0	0	logfile
✔	7A24	11615	2022-12-22	2020-08-16	3.8	3.92	—	3.8	0.009	1.16	33.0	1.08	14.94	0.01	0.850	24.02	2.62	9.6	90.1	0.3	-3.10	0.53	0.47	0.12	3.8	0.009	1.78	0.0	0.33	17.20	0.01	1.780	29.68	0.64	8.3	91.6	0.1	-2.10	1.19	0.59	0.59	0.49	49497	6253	46	0	17	0	0	logfile
✔	6W7M	21571	2022-12-22	2020-03-19	3.8	3.72	—	3.6	0.002	0.58	0.0	0.03	16.56	0.00	2.031	14.83	0.10	7.4	92.3	0.3	-3.67	0.68	0.56	0.12	3.6	0.003	0.74	0.0	0.04	18.06	0.01	2.049	23.10	0.89	11.3	88.5	0.3	-2.41	1.33	0.71	0.61	0.43	50694	2319	20	1512	0	0	0	logfile
✔	7o7R	12754	2022-12-20	2021-04-13	3.9	4.51	—	4.3	0.013	1.32	8.0	0.07	16.26	0.01	1.912	21.03	1.07	18.3	81.4	0.3	-5.78	0.83	0.75	0.13	4.3	0.004	0.96	0.0	0.05	17.08	0.01	1.975	22.06	0.45	9.7	90.2	0.1	-3.30	0.87	0.83	0.76	0.36	40530	5126	16	0	40	0	0	logfile
✔	7APK	11857	2022-12-14	2020-10-17	3.3	3.26	—	3.5	0.004	0.81	0.0	0.05	8.50	0.01	2.256	4.14	0.10	4.7	95.2	0.1	-2.73	0.41	0.22	0.13	2.9	0.005	0.75	0.0	0.04	12.98	0.00	2.104	13.12	0.18	6.2	93.7	0.1	1.08	1.15	0.50	0.44	1.00	72697	9893	30	0	74	0	0	logfile
✔	7CQ7	30438	2022-12-13	2020-08-08	3.55	3.95	—	4.0	0.008	1.07	0.0	0.06	10.32	0.01	1.915	5.84	0.07	9.3	90.7	0.0	-4.47	0.39	0.42	0.13	3.9	0.003	0.85	0.0	0.04	15.09	0.00	2.105	13.99	0.54	6.9	93.1	0.0	-0.82	1.30	0.50	0.68	-0.06	13810	1766	8	0	9	0	0	logfile
✔	8ANE	15540	2022-12-19	2022-08-05	3.2	2.95	3.14	3.2	0.003	0.64	0.0	0.04	15.69	0.01	2.198	3.37	0.93	4.6	95.4	0.0	-1.93	0.55	0.43	0.13	3.1	0.005	0.79	0.0	0.04	17.82	0.01	1.758	13.64	0.60	8.4	91.6	0.0	-1.96	2.69	0.66	0.65	1.36	36740	2212	8	66	0	0	18195	logfile
✔	8D6X	27225	2022-12-14	2022-06-06	3.2	10.22	—	—	0.003	0.62	0.0	0.04	12.14	0.00	2.195	17.80	0.06	2.6	97.4	0.0	1.17	0.70	0.42	0.14	—	0.003	0.70	0.0	0.04	14.56	0.00	2.047	30.78	0.28	5.0	95.0	0.0	0.03	4.65	0.60	0.35	0.08	68362	8957	41	0	0	0	0	logfile
✔	6RAW	4785	2022-12-20	2019-04-08	3.7	3.80	3.66	4.1	0.007	1.29	19.0	0.13	18.21	0.01	1.198	17.64	6.37	18.9	80.8	0.3	-5.55	0.47	0.49	0.14	3.8	0.004	0.84	0.0	0.05	18.41	0.01	2.107	15.65	0.77	12.1	87.9	0.0	-3.08	3.97	0.58	0.62	0.54	39710	4877	18	39	6	0	0	logfile
✔	7RTU	24689	2022-12-11	2021-08-15	3.89	4.06	—	4.1	0.003	0.51	0.0	0.04	14.84	0.00	2.175	7.11	0.16	3.1	96.9	0.0	4.32	0.55	0.69	0.15	4.1	0.004	0.56	0.0	0.04	16.78	0.00	2.208	7.11	0.16	2.8	97.2	0.0	4.06	0.28	0.62	0.73	0.11	5962	754	6	0	12	0	0	logfile
✔	5X59	6704	2022-12-15	2017-02-15	3.7	3.77	—	3.7	0.011	1.65	0.0	0.08	14.81	0.01	1.477	23.41	4.97	13.2	85.4	1.3	-3.87	0.48	0.41	0.15	3.7	0.004	1.05	0.0	0.05	15.67	0.01	2.059	19.91	0.21	12.7	87.1	0.2	-2.29	1.26	0.60	0.64	1.20	26838	3423	6	0	30	0	0	logfile
✔	6H5i	0140	2022-12-11	2018-07-24	3.9	3.87	—	23.0	0.006	0.81	0.0	0.05	10.47	0.01	2.196	2.64	0.17	4.3	95.7	0.0	-1.74	0.29	0.06	0.15	3.8	0.003	0.70	0.0	0.04	15.15	0.00	2.076	14.87	0.34	4.1	95.9	0.0	1.09	1.96	0.38	0.25	0.14	43900	5392	26	0	0	0	0	logfile
✔	7Q5R	13845	2022-12-17	2021-11-04	3.84	4.21	3.98	4.1	0.006	0.93	0.0	0.07	10.54	0.00	2.365	4.40	0.57	1.9	98.1	0.0	0.17	0.71	0.58	0.16	4.1	0.004	0.79	0.0	0.05	14.82	0.01	2.047	13.98	0.43	2.0	98.0	0.0	1.15	3.75	0.81	0.85	1.41	95520	12600	60	0	0	0	0	logfile
✔	7LiV	23386	2022-12-22	2021-01-28	3.6	3.63	—	3.6	0.009	0.95	1.0	0.05	13.49	0.01	1.080	27.01	2.97	4.9	94.5	0.6	-3.03	0.24	0.49	0.16	3.6	0.005	0.85	0.0	0.05	17.32	0.01	2.038	15.21	1.12	6.1	93.9	0.1	-1.34	1.79	0.39	0.82	1.44	47058	5903	12	0	0	0	0	logfile

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