Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	4V91	2599	2022-07-05	2014-03-21	3.7	3.84	—	3.8	0.133	4.77	525.0	0.43	20.66	0.07	0.695	20.15	12.79	14.1	78.2	7.8	-5.39	0.33	0.36	0.15	3.8	0.037	1.45	1.0	0.04	17.34	0.02	1.816	16.56	0.20	8.3	90.9	0.7	-2.82	1.96	0.62	0.80	1.42	125665	6450	45	3482	0	0	0	logfile
✔	7RTU	24689	2022-07-03	2021-08-15	3.89	4.06	—	4.1	0.003	0.51	0.0	0.04	14.84	0.00	2.175	7.11	0.16	3.1	96.9	0.0	4.32	0.55	0.69	0.15	4.1	0.003	0.52	0.0	0.04	16.76	0.00	2.223	7.20	0.47	2.5	97.5	0.0	4.38	0.29	0.61	0.71	0.38	5962	754	6	0	12	0	0	logfile
✔	5X59	6704	2022-07-05	2017-02-15	3.7	3.77	—	3.7	0.011	1.65	0.0	0.08	14.81	0.01	1.477	23.41	4.97	13.2	85.4	1.3	-3.87	0.48	0.41	0.15	3.7	0.011	1.41	1.0	0.05	15.52	0.01	1.647	29.34	0.27	13.3	86.4	0.3	-2.68	0.93	0.55	0.56	0.87	26838	3423	6	0	30	0	0	logfile
✔	7Q5R	13845	2022-07-06	2021-11-04	3.84	4.21	3.98	4.1	0.006	0.93	0.0	0.07	10.54	0.00	2.365	4.40	0.57	1.9	98.1	0.0	0.17	0.71	0.58	0.16	4.1	0.005	0.83	0.0	0.05	14.95	0.01	2.030	13.45	0.34	1.7	98.3	0.0	1.12	3.75	0.81	0.85	1.33	95520	12600	60	0	0	0	0	logfile
✘	3JCE	6550	2022-07-11	2015-12-01	3.2	4.36	—	14.0	0.008	0.87	0.0	0.04	14.83	0.00	1.106	32.70	0.47	10.4	84.8	4.8	-2.93	0.33	0.04	0.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	154017	6546	59	4798	2	0	0	logfile
✘	5L3P	4001	2022-07-09	2016-05-24	3.7	4.66	—	16.0	0.004	0.60	0.0	0.22	12.10	0.00	1.234	7.26	0.00	8.2	89.4	2.4	-1.95	0.44	0.11	0.16	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	149606	6419	58	4704	76	0	0	logfile
✔	7QG8	13952	2022-07-09	2021-12-07	3.97	7.71	—	4.0	0.016	1.62	61.0	0.11	15.09	0.01	0.770	4.91	1.61	8.6	90.4	1.0	-3.97	0.64	0.40	0.16	4.0	0.005	0.91	2.0	0.04	19.00	0.01	1.527	45.55	0.29	10.6	89.3	0.2	-2.84	4.29	0.83	0.79	-0.02	147108	5936	58	4695	3	9	0	logfile
✔	6o9J	0661	2022-07-07	2019-03-14	3.9	3.92	—	3.9	0.006	1.25	25.0	0.10	17.39	0.01	0.154	55.38	23.17	26.6	58.7	14.7	-7.10	0.74	0.66	0.16	3.9	0.011	1.11	13.0	0.05	16.81	0.01	1.333	31.28	0.41	22.8	74.1	3.1	-4.79	1.05	0.78	0.74	0.63	142682	5731	53	4564	0	0	0	logfile
✔	7LiV	23386	2022-07-08	2021-01-28	3.6	3.63	—	3.6	0.009	0.95	1.0	0.05	13.49	0.01	1.080	27.01	2.97	4.9	94.5	0.6	-3.03	0.24	0.49	0.16	3.6	0.008	0.97	1.0	0.05	17.47	0.01	2.078	14.91	1.00	5.8	94.1	0.1	-1.19	1.66	0.39	0.82	1.23	47058	5903	12	0	0	0	0	logfile
✘	7W0C	32238	2022-07-04	2021-11-18	3.93	4.02	—	3.8	0.002	0.55	0.0	0.04	13.50	0.00	2.105	14.50	0.07	4.2	95.8	0.1	-0.14	0.86	0.73	0.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	13663	1492	5	72	2	0	0	logfile
✘	6KKT	0702	2022-07-03	2019-07-27	2.9	2.94	—	7.1	0.010	1.15	0.0	0.06	11.12	0.01	2.343	4.35	0.34	3.6	96.4	0.0	-3.62	0.12	0.00	0.17	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8416	1074	4	0	24	0	0	logfile
✔	6EU3	3958	2022-07-07	2017-10-27	3.3	3.38	—	6.0	0.004	1.06	0.0	0.06	11.41	0.01	1.167	5.10	0.26	12.9	86.6	0.5	-5.18	0.23	0.03	0.17	3.3	0.014	1.36	4.0	0.05	15.60	0.01	1.547	24.09	0.12	14.8	84.8	0.4	-3.48	1.55	0.57	0.53	0.71	38330	4825	22	0	7	0	0	logfile
✔	7Q5B	13831	2022-07-05	2021-11-03	3.98	3.21	—	3.1	0.004	0.91	0.0	0.05	21.10	0.01	2.231	9.76	0.10	13.2	86.5	0.2	-2.84	0.50	0.39	0.17	3.1	0.011	1.12	1.0	0.05	22.78	0.01	2.015	23.89	0.50	13.6	86.3	0.1	-2.62	1.11	0.59	0.58	0.84	21746	2255	13	168	0	0	0	logfile
✔	6iXB	9745	2022-07-05	2018-12-09	3.55	5.22	—	3.8	0.008	1.07	3.0	0.09	14.51	0.01	1.838	34.32	7.71	4.9	95.1	0.0	-3.36	0.91	0.82	0.18	3.9	0.004	0.67	0.0	0.05	15.22	0.00	2.115	18.66	5.74	7.4	92.6	0.0	-1.77	0.54	0.90	0.84	0.50	22404	2892	12	0	78	0	0	logfile
✔	6EU2	3957	2022-07-07	2017-10-27	3.4	3.45	—	6.0	0.004	1.04	0.0	0.06	11.35	0.01	1.787	5.07	0.40	13.0	86.5	0.5	-5.22	0.27	0.04	0.18	3.4	0.011	1.17	3.0	0.05	15.41	0.01	1.507	19.10	0.26	11.6	88.1	0.3	-2.77	1.48	0.55	0.48	0.07	38329	4825	22	0	7	0	0	logfile
✔	7AS9	11890	2022-07-06	2020-10-27	3.5	4.52	3.51	4.2	0.007	0.98	0.0	0.05	17.12	0.01	1.976	8.28	0.07	13.0	86.6	0.4	-4.86	0.92	0.83	0.18	4.2	0.004	0.75	0.0	0.04	17.78	0.01	2.058	26.71	0.60	10.6	89.3	0.1	-2.74	0.71	0.92	0.84	0.44	93137	3720	32	2999	0	0	0	logfile
✔	7MF3	23810	2022-07-05	2021-04-08	3.4	4.14	—	3.2	0.003	0.68	0.0	0.04	15.41	0.00	1.985	17.49	0.04	6.5	93.5	0.0	-0.34	0.90	0.73	0.19	3.1	0.003	0.72	0.0	0.04	17.47	0.01	1.954	17.38	0.24	7.4	92.6	0.0	-0.73	1.45	0.91	0.74	0.16	22938	2822	12	0	8	0	0	logfile
✔	6RED	4850	2022-07-06	2019-04-12	3.0	3.22	3.14	27.0	0.012	1.04	0.0	0.06	14.48	0.01	2.140	5.89	0.31	4.7	95.2	0.1	-3.86	0.16	0.02	0.19	27.0	0.008	0.95	1.0	0.04	16.14	0.01	1.576	21.96	2.38	4.8	95.0	0.2	-1.22	0.93	0.24	0.15	0.26	33899	4503	25	0	10	0	0	logfile
✔	7FJo	31625	2022-07-06	2021-08-04	3.34	3.72	—	3.5	0.012	1.56	4.0	0.09	12.63	0.02	1.277	9.44	3.26	7.2	92.4	0.4	-1.06	0.55	0.36	0.19	3.5	0.007	0.83	0.0	0.05	14.72	0.01	2.033	12.51	0.51	5.5	94.5	0.1	-0.67	1.98	0.77	0.79	1.88	28547	3640	12	0	25	0	0	logfile
✔	7MVU	24056	2022-07-05	2021-05-15	3.77	4.87	3.73	4.0	0.002	0.36	0.0	0.03	6.38	0.00	2.187	3.55	0.00	1.1	98.9	0.0	-0.33	0.85	0.73	0.19	4.0	0.002	0.58	0.0	0.03	11.75	0.00	1.907	11.81	0.07	3.4	96.6	0.0	2.54	2.06	0.88	0.82	0.38	25645	1604	2	0	0	0	12841	logfile

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