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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 4V91 | 2599 | 2022-05-15 | 2014-03-21 | 3.7 | 3.84 | — | 3.8 | 0.133 | 4.77 | 525.0 | 0.43 | 20.66 | 0.07 | 0.695 | 20.15 | 12.79 | 14.1 | 78.2 | 7.8 | -5.39 | 0.33 | 0.36 | 0.15 | 3.8 | 0.029 | 1.21 | 1.0 | 0.04 | 17.29 | 0.01 | 1.610 | 16.06 | 0.15 | 7.8 | 91.4 | 0.8 | -2.72 | 1.86 | 0.61 | 0.79 | 1.30 | 125665 | 6450 | 45 | 3482 | 0 | 0 | 0 | logfile |
✔ | 6H5i | 0140 | 2022-05-12 | 2018-07-24 | 3.9 | 3.87 | — | 23.0 | 0.006 | 0.81 | 0.0 | 0.05 | 10.47 | 0.01 | 2.196 | 2.64 | 0.17 | 4.3 | 95.7 | 0.0 | -1.74 | 0.29 | 0.06 | 0.15 | 3.8 | 0.005 | 0.83 | 0.0 | 0.04 | 15.12 | 0.01 | 1.992 | 18.45 | 0.63 | 4.7 | 95.3 | 0.0 | 0.75 | 1.92 | 0.38 | 0.26 | 0.19 | 43900 | 5392 | 26 | 0 | 0 | 0 | 0 | logfile |
✔ | 5L3P | 4001 | 2022-05-21 | 2016-05-24 | 3.7 | 4.66 | — | 16.0 | 0.006 | 0.60 | 0.0 | 0.19 | 12.42 | 0.02 | 2.115 | 7.26 | 0.00 | 8.2 | 89.4 | 2.4 | -1.95 | 0.44 | 0.11 | 0.16 | 3.9 | 0.009 | 1.22 | 4.0 | 0.05 | 18.03 | 0.01 | 1.651 | 53.10 | 0.21 | 10.9 | 88.4 | 0.7 | -2.75 | 2.46 | 0.66 | 0.41 | 0.07 | 149606 | 6419 | 58 | 4704 | 76 | 0 | 0 | logfile |
✔ | 7LiV | 23386 | 2022-05-18 | 2021-01-28 | 3.6 | 3.63 | — | 3.6 | 0.009 | 0.95 | 1.0 | 0.05 | 13.49 | 0.01 | 1.080 | 27.01 | 2.97 | 4.9 | 94.5 | 0.6 | -3.03 | 0.24 | 0.49 | 0.16 | 3.6 | 0.008 | 0.97 | 1.0 | 0.05 | 17.47 | 0.01 | 2.078 | 14.91 | 1.00 | 5.8 | 94.1 | 0.1 | -1.19 | 1.66 | 0.39 | 0.82 | 1.23 | 47058 | 5903 | 12 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Q5R | 13845 | 2022-05-17 | 2021-11-04 | 3.84 | 4.21 | 3.98 | 4.1 | 0.006 | 0.93 | 0.0 | 0.07 | 10.54 | 0.00 | 2.365 | 4.40 | 0.57 | 1.9 | 98.1 | 0.0 | 0.17 | 0.71 | 0.58 | 0.16 | 4.1 | 0.005 | 0.83 | 0.0 | 0.05 | 14.95 | 0.01 | 2.030 | 13.45 | 0.34 | 1.7 | 98.3 | 0.0 | 1.12 | 3.75 | 0.81 | 0.85 | 1.33 | 95520 | 12600 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 6o9J | 0661 | 2022-05-18 | 2019-03-14 | 3.9 | 3.92 | — | 3.9 | 0.006 | 1.25 | 25.0 | 0.10 | 17.39 | 0.01 | 0.154 | 55.38 | 23.17 | 26.6 | 58.7 | 14.7 | -7.10 | 0.74 | 0.66 | 0.16 | 3.9 | 0.011 | 1.09 | 10.0 | 0.05 | 17.02 | 0.01 | 1.293 | 32.80 | 0.58 | 23.4 | 73.7 | 3.0 | -4.89 | 1.14 | 0.79 | 0.75 | 0.36 | 142682 | 5731 | 53 | 4564 | 0 | 0 | 0 | logfile |
✔ | 7QG8 | 13952 | 2022-05-21 | 2021-12-07 | 3.97 | 7.71 | — | 4.0 | 0.016 | 1.62 | 61.0 | 0.11 | 15.09 | 0.01 | 0.770 | 4.91 | 1.61 | 8.6 | 90.4 | 1.0 | -3.97 | 0.64 | 0.40 | 0.16 | 4.0 | 0.005 | 0.77 | 1.0 | 0.04 | 17.93 | 0.01 | 1.927 | 35.99 | 0.58 | 9.5 | 90.4 | 0.1 | -2.27 | 3.78 | 0.84 | 0.76 | -0.02 | 147108 | 5936 | 58 | 4695 | 3 | 9 | 0 | logfile |
✔ | 3JCE | 6550 | 2022-05-24 | 2015-12-01 | 3.2 | 4.36 | — | 14.0 | 0.008 | 0.88 | 0.0 | 0.04 | 14.83 | 0.00 | 1.106 | 32.70 | 0.47 | 10.4 | 84.8 | 4.8 | -2.93 | 0.33 | 0.04 | 0.16 | 3.2 | 0.007 | 1.06 | 3.0 | 0.05 | 17.20 | 0.01 | 1.577 | 41.40 | 0.19 | 11.5 | 87.2 | 1.3 | -3.17 | 1.17 | 0.63 | 0.30 | 0.33 | 154017 | 6546 | 59 | 4798 | 2 | 0 | 0 | logfile |
✘ | 6KKT | 0702 | 2022-05-12 | 2019-07-27 | 2.9 | 2.94 | — | 7.1 | 0.010 | 1.15 | 0.0 | 0.06 | 11.12 | 0.01 | 2.343 | 4.35 | 0.34 | 3.6 | 96.4 | 0.0 | -3.62 | 0.12 | 0.00 | 0.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 8416 | 1074 | 4 | 0 | 24 | 0 | 0 | logfile |
✔ | 7Q5B | 13831 | 2022-05-14 | 2021-11-03 | 3.98 | 3.21 | — | 3.1 | 0.004 | 0.91 | 0.0 | 0.05 | 21.10 | 0.01 | 2.231 | 9.76 | 0.10 | 13.2 | 86.5 | 0.2 | -2.84 | 0.50 | 0.39 | 0.17 | 3.1 | 0.011 | 1.12 | 1.0 | 0.05 | 22.78 | 0.01 | 2.015 | 23.89 | 0.50 | 13.6 | 86.3 | 0.1 | -2.62 | 1.11 | 0.59 | 0.58 | 0.84 | 21746 | 2255 | 13 | 168 | 0 | 0 | 0 | logfile |
✘ | 7W0C | 32238 | 2022-05-13 | 2021-11-18 | 3.93 | 4.02 | — | 3.8 | 0.002 | 0.55 | 0.0 | 0.04 | 13.50 | 0.00 | 2.105 | 14.50 | 0.07 | 4.2 | 95.8 | 0.1 | -0.14 | 0.86 | 0.73 | 0.17 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 13663 | 1492 | 5 | 72 | 2 | 0 | 0 | logfile |
✔ | 6EU3 | 3958 | 2022-05-17 | 2017-10-27 | 3.3 | 3.38 | — | 6.0 | 0.004 | 1.06 | 0.0 | 0.06 | 11.41 | 0.01 | 1.167 | 5.10 | 0.26 | 12.9 | 86.6 | 0.5 | -5.18 | 0.23 | 0.03 | 0.17 | 3.3 | 0.014 | 1.36 | 4.0 | 0.05 | 15.60 | 0.01 | 1.547 | 24.09 | 0.12 | 14.8 | 84.8 | 0.4 | -3.48 | 1.55 | 0.57 | 0.53 | 0.71 | 38330 | 4825 | 22 | 0 | 7 | 0 | 0 | logfile |
✔ | 6iXB | 9745 | 2022-05-15 | 2018-12-09 | 3.55 | 5.22 | — | 3.8 | 0.008 | 1.07 | 3.0 | 0.09 | 14.51 | 0.01 | 1.838 | 34.32 | 7.71 | 4.9 | 95.1 | 0.0 | -3.36 | 0.91 | 0.82 | 0.18 | 3.9 | 0.004 | 0.67 | 0.0 | 0.05 | 15.22 | 0.00 | 2.115 | 18.66 | 5.74 | 7.4 | 92.6 | 0.0 | -1.77 | 0.54 | 0.90 | 0.84 | 0.50 | 22404 | 2892 | 12 | 0 | 78 | 0 | 0 | logfile |
✔ | 6EU2 | 3957 | 2022-05-17 | 2017-10-27 | 3.4 | 3.45 | — | 6.0 | 0.004 | 1.04 | 0.0 | 0.06 | 11.35 | 0.01 | 1.787 | 5.07 | 0.40 | 13.0 | 86.5 | 0.5 | -5.22 | 0.27 | 0.04 | 0.18 | 3.4 | 0.011 | 1.17 | 3.0 | 0.05 | 15.41 | 0.01 | 1.507 | 19.10 | 0.26 | 11.6 | 88.1 | 0.3 | -2.77 | 1.48 | 0.55 | 0.48 | 0.07 | 38329 | 4825 | 22 | 0 | 7 | 0 | 0 | logfile |
✔ | 7AS9 | 11890 | 2022-05-16 | 2020-10-27 | 3.5 | 4.52 | 3.51 | 4.2 | 0.007 | 0.98 | 0.0 | 0.05 | 17.12 | 0.01 | 1.976 | 8.28 | 0.07 | 13.0 | 86.6 | 0.4 | -4.86 | 0.92 | 0.83 | 0.18 | 4.2 | 0.004 | 0.75 | 0.0 | 0.04 | 17.78 | 0.01 | 2.058 | 26.71 | 0.60 | 10.6 | 89.3 | 0.1 | -2.74 | 0.71 | 0.92 | 0.84 | 0.44 | 93137 | 3720 | 32 | 2999 | 0 | 0 | 0 | logfile |
✔ | 7MF3 | 23810 | 2022-05-15 | 2021-04-08 | 3.4 | 4.14 | — | 3.2 | 0.003 | 0.68 | 0.0 | 0.04 | 15.41 | 0.00 | 1.985 | 17.49 | 0.04 | 6.5 | 93.5 | 0.0 | -0.34 | 0.90 | 0.73 | 0.19 | 3.1 | 0.003 | 0.72 | 0.0 | 0.04 | 17.47 | 0.01 | 1.954 | 17.38 | 0.24 | 7.4 | 92.6 | 0.0 | -0.73 | 1.45 | 0.91 | 0.74 | 0.16 | 22938 | 2822 | 12 | 0 | 8 | 0 | 0 | logfile |
✔ | 7DN3 | 30779 | 2022-05-17 | 2020-12-08 | 3.5 | 4.31 | — | 3.8 | 0.012 | 1.43 | 31.0 | 0.09 | 16.91 | 0.01 | 1.961 | 21.76 | 4.73 | 9.9 | 89.4 | 0.7 | -4.77 | 0.75 | 0.61 | 0.19 | 3.8 | 0.008 | 0.98 | 1.0 | 0.05 | 17.63 | 0.01 | 1.621 | 26.40 | 0.23 | 9.4 | 90.4 | 0.2 | -2.42 | 1.02 | 0.83 | 0.76 | 0.67 | 36856 | 4521 | 26 | 45 | 8 | 0 | 0 | logfile |
✔ | 7FJo | 31625 | 2022-05-15 | 2021-08-04 | 3.34 | 3.72 | — | 3.5 | 0.012 | 1.56 | 4.0 | 0.09 | 12.63 | 0.02 | 1.277 | 9.44 | 3.26 | 7.2 | 92.4 | 0.4 | -1.06 | 0.55 | 0.36 | 0.19 | 3.5 | 0.007 | 0.83 | 0.0 | 0.05 | 14.72 | 0.01 | 2.033 | 12.51 | 0.51 | 5.5 | 94.5 | 0.1 | -0.67 | 1.98 | 0.77 | 0.79 | 1.88 | 28547 | 3640 | 12 | 0 | 25 | 0 | 0 | logfile |
✔ | 6RED | 4850 | 2022-05-16 | 2019-04-12 | 3.0 | 3.22 | 3.14 | 27.0 | 0.012 | 1.04 | 0.0 | 0.06 | 14.48 | 0.01 | 2.140 | 5.89 | 0.31 | 4.7 | 95.2 | 0.1 | -3.86 | 0.16 | 0.02 | 0.19 | 27.0 | 0.008 | 0.95 | 1.0 | 0.04 | 16.14 | 0.01 | 1.576 | 21.96 | 2.38 | 4.8 | 95.0 | 0.2 | -1.22 | 0.93 | 0.24 | 0.15 | 0.26 | 33899 | 4503 | 25 | 0 | 10 | 0 | 0 | logfile |
✔ | 6CB8 | 7449 | 2022-05-17 | 2018-02-02 | 3.8 | 4.11 | — | 4.7 | 0.006 | 0.84 | 0.0 | 0.05 | 11.53 | 0.01 | 1.542 | 37.70 | 0.00 | 18.6 | 81.4 | 0.0 | -5.72 | 0.54 | 0.27 | 0.20 | 4.0 | 0.011 | 0.99 | 1.0 | 0.04 | 15.21 | 0.01 | 1.760 | 22.20 | 0.27 | 11.3 | 88.7 | 0.0 | -3.56 | 1.96 | 0.64 | 0.51 | 0.20 | 100224 | 6210 | 27 | 0 | 27 | 0 | 50436 | logfile |