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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 8SZB | 40907 | 2023-12-07 | 2023-05-29 | 3.07 | 3.36 | 3.01 | 3.5 | 0.003 | 0.51 | 0.0 | 0.03 | 16.77 | 0.00 | 2.154 | 9.22 | 0.37 | 1.5 | 98.5 | 0.0 | 2.06 | 0.49 | 0.73 | 0.50 | 3.5 | 0.002 | 0.56 | 0.0 | 0.04 | 16.43 | 0.00 | 2.066 | 7.08 | 0.74 | 1.5 | 98.5 | 0.0 | 4.17 | 0.72 | 0.52 | 0.80 | 1.21 | 4962 | 612 | 12 | 0 | 6 | 0 | 0 | logfile |
✔ | 8FZR | 29638 | 2023-12-07 | 2023-01-29 | 3.6 | 5.09 | 4.10 | 4.1 | 0.002 | 0.48 | 0.0 | 0.03 | 19.69 | 0.00 | 2.234 | 12.34 | 6.97 | 4.6 | 94.4 | 1.0 | -1.87 | 0.52 | 0.24 | 0.50 | 4.2 | 0.003 | 0.72 | 0.0 | 0.04 | 21.96 | 0.00 | 2.155 | 20.13 | 0.22 | 5.2 | 94.6 | 0.2 | -1.90 | 1.68 | 0.82 | 0.64 | 1.22 | 5711 | 503 | 3 | 77 | 1 | 0 | 0 | logfile |
✔ | 7N5A | 24184 | 2023-12-08 | 2021-06-05 | 3.95 | 4.30 | 3.92 | 4.1 | 0.003 | 0.61 | 0.0 | 0.04 | 14.01 | 0.00 | 2.045 | 11.83 | 0.20 | 2.1 | 97.9 | 0.0 | 0.92 | 0.69 | 0.77 | 0.50 | 4.1 | 0.004 | 0.74 | 0.0 | 0.04 | 15.73 | 0.00 | 1.840 | 16.02 | 0.30 | 4.1 | 95.9 | 0.0 | 0.52 | 0.48 | 0.70 | 0.78 | 0.73 | 9254 | 1178 | 4 | 0 | 6 | 0 | 0 | logfile |
✔ | 7QL4 | 14063 | 2023-12-08 | 2021-12-19 | 3.2 | 3.36 | 2.99 | 3.5 | 0.011 | 1.86 | 0.0 | 0.10 | 12.28 | 0.01 | 2.511 | 0.28 | 0.00 | 8.3 | 91.7 | 0.0 | -1.77 | 0.26 | 0.51 | 0.51 | 3.3 | 0.003 | 0.62 | 0.0 | 0.05 | 15.26 | 0.01 | 2.061 | 7.92 | 0.00 | 1.1 | 98.9 | 0.0 | -1.72 | 2.13 | 0.30 | 0.73 | 3.45 | 7074 | 456 | 6 | 0 | 0 | 0 | 3606 | logfile |
✔ | 7V8L | 31803 | 2023-12-09 | 2021-08-23 | 3.5 | 3.83 | — | 3.8 | 0.006 | 0.79 | 1.0 | 0.05 | 15.39 | 0.01 | 2.198 | 11.42 | 1.03 | 3.2 | 96.6 | 0.2 | -0.03 | 0.58 | 0.62 | 0.51 | 3.8 | 0.005 | 0.78 | 0.0 | 0.05 | 17.13 | 0.00 | 2.108 | 11.42 | 0.72 | 3.2 | 96.8 | 0.0 | 0.21 | 0.90 | 0.63 | 0.74 | 1.16 | 9505 | 1277 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 6NPY | 0476 | 2023-12-08 | 2019-01-18 | 3.8 | 4.03 | — | 3.8 | 0.006 | 1.16 | 0.0 | 0.06 | 16.44 | 0.01 | 2.244 | 8.58 | 0.84 | 14.6 | 85.3 | 0.1 | -4.90 | 0.79 | 0.71 | 0.51 | 3.8 | 0.003 | 0.91 | 0.0 | 0.05 | 17.24 | 0.00 | 2.196 | 17.36 | 0.60 | 10.2 | 89.8 | 0.0 | -2.29 | 1.10 | 0.78 | 0.70 | 0.72 | 7586 | 965 | 3 | 0 | 1 | 0 | 0 | logfile |
✘ | 8GNB | 34159 | 2023-12-10 | 2022-08-23 | 3.9 | 5.27 | 4.76 | 5.1 | 0.004 | 0.94 | 0.0 | 0.05 | 12.92 | 0.01 | 2.231 | 14.24 | 0.00 | 5.1 | 94.9 | 0.0 | -0.65 | 0.53 | 0.62 | 0.52 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15770 | 2010 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 6X62 | 22068 | 2023-12-08 | 2020-05-27 | 3.5 | 3.69 | — | 3.7 | 0.014 | 1.87 | 45.0 | 0.09 | 15.63 | 0.01 | 2.185 | 6.98 | 4.90 | 8.5 | 91.5 | 0.0 | -3.87 | 0.65 | 0.64 | 0.52 | 3.6 | 0.004 | 0.87 | 0.0 | 0.05 | 16.24 | 0.00 | 1.996 | 20.45 | 0.90 | 6.4 | 93.6 | 0.0 | -1.71 | 1.27 | 0.74 | 0.82 | 1.24 | 109070 | 15548 | 117 | 0 | 0 | 0 | 0 | logfile |
✔ | 7CG4 | 30350 | 2023-12-09 | 2020-06-30 | 3.6 | 4.04 | — | 3.9 | 0.003 | 0.69 | 0.0 | 0.04 | 14.90 | 0.00 | 2.192 | 7.47 | 0.34 | 5.1 | 94.9 | 0.0 | -2.88 | 0.49 | 0.77 | 0.53 | 4.0 | 0.004 | 0.88 | 0.0 | 0.04 | 17.36 | 0.00 | 2.148 | 10.42 | 0.51 | 5.3 | 94.7 | 0.1 | 1.07 | 1.96 | 0.45 | 0.76 | 0.41 | 10943 | 1419 | 11 | 0 | 0 | 0 | 0 | logfile |
✔ | 7SoY | 25363 | 2023-12-09 | 2021-11-01 | 3.4 | 4.73 | — | 3.7 | 0.003 | 0.63 | 0.0 | 0.04 | 12.63 | 0.00 | 2.231 | 12.96 | 0.37 | 1.7 | 98.3 | 0.0 | 1.32 | 0.90 | 0.83 | 0.53 | 3.7 | 0.003 | 0.64 | 0.0 | 0.04 | 14.33 | 0.00 | 2.076 | 14.51 | 0.22 | 2.4 | 97.6 | 0.0 | 1.48 | 0.49 | 0.91 | 0.85 | 0.39 | 12180 | 1529 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 8FWK | 29511 | 2023-12-08 | 2023-01-22 | 3.5 | 4.25 | 3.71 | 4.0 | 0.005 | 1.07 | 2.0 | 0.06 | 12.40 | 0.01 | 2.289 | 13.87 | 1.29 | 11.6 | 87.2 | 1.2 | -4.60 | 0.66 | 0.72 | 0.53 | 4.0 | 0.003 | 0.74 | 0.0 | 0.04 | 15.19 | 0.00 | 2.133 | 11.92 | 0.20 | 11.7 | 88.1 | 0.3 | -0.86 | 2.37 | 0.68 | 0.77 | 0.78 | 9462 | 1194 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 8oR4 | 17117 | 2023-12-10 | 2023-04-13 | 3.8 | 2.76 | 3.68 | 2.2 | 0.003 | 0.59 | 1.0 | 0.04 | 16.20 | 0.00 | 1.930 | 10.19 | 0.31 | 6.0 | 94.0 | 0.0 | 0.05 | 0.70 | 0.66 | 0.53 | 2.2 | 0.003 | 0.77 | 0.0 | 0.04 | 17.22 | 0.00 | 2.145 | 10.05 | 0.56 | 5.8 | 94.2 | 0.0 | -0.28 | 0.54 | 0.71 | 0.67 | 0.47 | 15036 | 1988 | 7 | 0 | 0 | 0 | 0 | logfile |
✔ | 7CR4 | 30447 | 2023-12-11 | 2020-08-12 | 3.9 | 4.24 | — | 3.9 | 0.008 | 0.65 | 0.0 | 0.04 | 13.14 | 0.00 | 1.833 | 102.74 | 0.00 | 4.6 | 95.4 | 0.0 | -2.89 | 0.59 | 0.76 | 0.53 | 3.9 | 0.004 | 0.87 | 1.0 | 0.04 | 16.37 | 0.00 | 2.127 | 26.39 | 0.60 | 2.9 | 97.1 | 0.0 | 0.40 | 1.42 | 0.57 | 0.76 | 0.47 | 15988 | 1968 | 12 | 0 | 4 | 0 | 0 | logfile |
✔ | 6TUQ | 10594 | 2023-12-11 | 2020-01-08 | 3.9 | 4.52 | — | 4.0 | 0.009 | 1.01 | 0.0 | 0.05 | 11.22 | 0.00 | 2.191 | 8.45 | 3.12 | 0.0 | 100.0 | 0.0 | -6.69 | 0.68 | 0.88 | 0.54 | 4.0 | 0.003 | 0.70 | 0.0 | 0.04 | 12.36 | 0.00 | 2.317 | 11.19 | 0.12 | 0.3 | 99.7 | 0.0 | -0.42 | 1.65 | 0.69 | 0.88 | 0.65 | 16100 | 2300 | 50 | 0 | 0 | 0 | 0 | logfile |
✔ | 8TJ3 | 41299 | 2023-12-10 | 2023-07-20 | 3.2 | 3.62 | — | 3.4 | 0.004 | 0.72 | 0.0 | 0.04 | 13.85 | 0.02 | 2.416 | 10.13 | 1.16 | 7.4 | 92.4 | 0.1 | 0.15 | 0.73 | 0.58 | 0.54 | 3.4 | 0.003 | 0.63 | 0.0 | 0.04 | 15.49 | 0.00 | 1.956 | 16.53 | 0.00 | 8.0 | 92.0 | 0.0 | 0.48 | 1.88 | 0.79 | 0.76 | 1.68 | 13127 | 833 | 2 | 0 | 0 | 0 | 6652 | logfile |
✔ | 7Z4K | 14500 | 2023-12-10 | 2022-03-04 | 3.81 | 4.83 | 3.89 | 3.9 | 0.003 | 0.44 | 0.0 | 0.03 | 16.74 | 0.00 | 2.200 | 9.44 | 0.99 | 2.4 | 97.6 | 0.0 | 1.12 | 0.85 | 0.75 | 0.54 | 3.9 | 0.004 | 0.72 | 0.0 | 0.04 | 18.48 | 0.00 | 2.113 | 24.40 | 0.41 | 5.3 | 94.7 | 0.0 | -0.14 | 2.38 | 0.88 | 0.80 | 0.75 | 14005 | 1360 | 4 | 138 | 0 | 0 | 0 | logfile |
✔ | 7F62 | 31470 | 2023-12-07 | 2021-06-24 | 3.6 | 4.33 | — | 4.1 | 0.003 | 0.65 | 0.0 | 0.04 | 13.21 | 0.00 | 1.925 | 19.73 | 1.38 | 8.1 | 91.6 | 0.2 | -2.76 | 0.66 | 0.62 | 0.54 | 4.1 | 0.003 | 0.63 | 0.0 | 0.04 | 15.29 | 0.00 | 2.210 | 10.02 | 0.28 | 9.3 | 90.7 | 0.0 | -1.80 | 1.81 | 0.69 | 0.77 | 1.53 | 3321 | 427 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 5XLo | 6729 | 2023-12-10 | 2017-05-11 | 3.8 | 3.91 | — | 3.9 | 0.009 | 1.37 | 0.0 | 0.06 | 15.08 | 0.01 | 2.050 | 13.55 | 0.29 | 17.3 | 81.9 | 0.8 | -6.02 | 0.58 | 0.64 | 0.55 | 3.9 | 0.004 | 0.92 | 0.0 | 0.04 | 18.17 | 0.01 | 2.072 | 21.53 | 0.81 | 17.0 | 82.5 | 0.5 | -4.05 | 1.61 | 0.62 | 0.66 | 0.94 | 15413 | 2073 | 9 | 38 | 0 | 0 | 0 | logfile |
✔ | 8iDB | 35362 | 2023-12-08 | 2023-02-12 | 3.9 | 4.38 | 3.73 | 4.2 | 0.005 | 1.04 | 0.0 | 0.06 | 11.65 | 0.01 | 2.256 | 5.21 | 0.32 | 5.8 | 93.7 | 0.5 | -3.59 | 0.69 | 0.73 | 0.55 | 4.2 | 0.004 | 0.72 | 0.0 | 0.04 | 14.03 | 0.00 | 2.136 | 16.68 | 0.49 | 7.4 | 92.3 | 0.3 | -1.40 | 0.48 | 0.70 | 0.75 | 0.51 | 6835 | 982 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 7Mi9 | 23843 | 2023-12-10 | 2021-04-16 | 3.89 | 3.92 | — | 3.7 | 0.006 | 0.91 | 1.0 | 0.05 | 24.16 | 0.01 | 2.008 | 38.70 | 2.08 | 13.2 | 86.3 | 0.6 | -3.37 | 0.70 | 0.48 | 0.55 | 3.6 | 0.004 | 0.83 | 0.0 | 0.04 | 24.19 | 0.01 | 2.092 | 23.93 | 0.31 | 8.8 | 91.2 | 0.0 | -2.28 | 2.54 | 0.75 | 0.60 | 1.11 | 15924 | 1554 | 10 | 170 | 0 | 0 | 0 | logfile |