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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6Q2S | 20579 | 2023-12-10 | 2019-08-08 | 3.8 | 4.19 | — | 4.0 | 0.008 | 1.06 | 0.0 | 0.06 | 9.19 | 0.01 | 1.366 | 3.84 | 0.13 | 7.6 | 92.4 | 0.0 | -4.58 | 0.64 | 0.51 | 0.55 | 4.0 | 0.003 | 0.78 | 0.0 | 0.04 | 14.19 | 0.00 | 2.026 | 14.30 | 0.60 | 5.8 | 94.2 | 0.0 | -1.89 | 1.87 | 0.74 | 0.70 | 0.62 | 13726 | 1734 | 10 | 0 | 22 | 0 | 0 | logfile |
✔ | 6RiU | 4898 | 2023-12-07 | 2019-04-25 | 3.9 | 6.21 | 2.04 | 7.0 | 0.008 | 1.19 | 0.0 | 0.09 | 15.19 | 0.01 | 2.182 | 5.20 | 0.00 | 8.4 | 91.6 | 0.0 | -5.77 | 0.59 | 0.69 | 0.56 | 7.1 | 0.003 | 0.68 | 0.0 | 0.03 | 16.88 | 0.00 | 2.053 | 14.90 | 0.00 | 5.1 | 94.9 | 0.0 | -0.72 | 1.43 | 0.61 | 0.75 | 0.76 | 2882 | 182 | 2 | 0 | 0 | 0 | 1430 | logfile |
✔ | 6A7F | 6993 | 2023-12-09 | 2018-07-03 | 3.4 | 3.51 | — | 3.4 | 0.014 | 1.17 | 0.0 | 0.06 | 11.20 | 0.01 | 2.271 | 4.26 | 0.00 | 0.0 | 100.0 | 0.0 | -2.13 | 0.55 | 0.84 | 0.56 | 3.4 | 0.004 | 0.71 | 0.0 | 0.04 | 17.78 | 0.00 | 2.148 | 14.92 | 0.41 | 0.7 | 99.3 | 0.0 | 1.97 | 2.06 | 0.60 | 0.86 | -0.08 | 10830 | 1410 | 30 | 0 | 0 | 0 | 0 | logfile |
✔ | 5FN1 | 3236 | 2023-12-09 | 2015-11-10 | 3.9 | 4.00 | — | 4.7 | 0.009 | 1.18 | 0.0 | 0.07 | 11.47 | 0.00 | 0.877 | 53.81 | 0.00 | 8.8 | 88.4 | 2.8 | -3.37 | 0.24 | 0.29 | 0.57 | 3.9 | 0.004 | 0.81 | 0.0 | 0.04 | 16.64 | 0.01 | 1.872 | 19.75 | 0.99 | 11.5 | 87.4 | 1.2 | -0.95 | 2.11 | 0.40 | 0.73 | 1.08 | 61308 | 3906 | 36 | 90 | 0 | 0 | 30078 | logfile |
✔ | 8UHF | 42279 | 2023-12-09 | 2023-10-09 | 3.8 | 3.77 | — | 1.7 | 0.002 | 0.49 | 0.0 | 0.04 | 12.21 | 0.00 | 2.126 | 10.07 | 0.00 | 3.0 | 97.0 | 0.0 | -1.49 | 0.62 | 0.79 | 0.57 | 1.7 | 0.004 | 0.85 | 0.0 | 0.04 | 15.96 | 0.00 | 2.168 | 23.75 | 0.84 | 4.9 | 95.1 | 0.0 | -0.34 | 0.92 | 0.63 | 0.81 | 0.15 | 12411 | 1739 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 5W81 | 8782 | 2023-12-08 | 2017-06-21 | 3.37 | 3.79 | — | 3.9 | 0.008 | 1.26 | 1.0 | 0.06 | 13.89 | 0.00 | 1.940 | 1.47 | 0.00 | 5.1 | 94.9 | 0.0 | -3.11 | 0.45 | 0.60 | 0.57 | 3.8 | 0.003 | 0.72 | 0.0 | 0.04 | 16.84 | 0.00 | 1.920 | 8.31 | 0.79 | 3.2 | 96.7 | 0.1 | 0.09 | 1.54 | 0.58 | 0.82 | 1.53 | 9393 | 1173 | 1 | 0 | 4 | 0 | 0 | logfile |
✔ | 6NCV | 0438 | 2023-12-10 | 2018-12-12 | 3.7 | 3.98 | — | 3.9 | 0.008 | 0.94 | 0.0 | 0.05 | 17.27 | 0.01 | 2.398 | 4.87 | 2.74 | 9.1 | 90.9 | 0.0 | -6.46 | 0.73 | 0.84 | 0.57 | 3.9 | 0.004 | 0.72 | 0.0 | 0.04 | 18.64 | 0.00 | 2.088 | 7.36 | 0.85 | 7.7 | 92.3 | 0.0 | -0.38 | 1.32 | 0.75 | 0.86 | 1.18 | 15456 | 1911 | 21 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YG1 | 33804 | 2023-12-08 | 2022-07-09 | 3.77 | 4.01 | 3.78 | 3.9 | 0.005 | 1.15 | 1.0 | 0.06 | 14.00 | 0.01 | 2.230 | 42.79 | 1.33 | 14.0 | 86.0 | 0.0 | -3.77 | 0.65 | 0.65 | 0.57 | 3.9 | 0.004 | 0.93 | 0.0 | 0.05 | 16.74 | 0.00 | 2.054 | 28.13 | 0.74 | 9.6 | 90.3 | 0.1 | -2.02 | 1.47 | 0.68 | 0.69 | 0.01 | 6208 | 770 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6W8P | 21577 | 2023-12-08 | 2020-03-21 | 3.6 | 4.05 | — | 4.0 | 0.004 | 0.76 | 0.0 | 0.04 | 18.04 | 0.00 | 2.236 | 14.92 | 10.89 | 10.4 | 89.6 | 0.0 | -3.47 | 0.57 | 0.80 | 0.57 | 4.0 | 0.004 | 0.80 | 0.0 | 0.04 | 17.40 | 0.00 | 2.216 | 14.38 | 0.86 | 9.4 | 90.6 | 0.0 | -0.22 | 2.10 | 0.57 | 0.78 | 0.53 | 6509 | 844 | 4 | 0 | 3 | 0 | 0 | logfile |
✔ | 5X0M | 6698 | 2023-12-09 | 2017-01-21 | 3.8 | 3.85 | — | 3.9 | 0.009 | 1.41 | 2.0 | 0.06 | 21.02 | 0.01 | 1.915 | 54.20 | 11.48 | 12.9 | 81.9 | 5.2 | -5.95 | 0.39 | 0.57 | 0.58 | 3.8 | 0.004 | 0.96 | 0.0 | 0.05 | 17.28 | 0.01 | 2.179 | 16.03 | 0.66 | 11.0 | 88.2 | 0.8 | -1.27 | 1.80 | 0.53 | 0.76 | 1.59 | 10654 | 1323 | 8 | 0 | 20 | 0 | 0 | logfile |
✔ | 8oM9 | 16971 | 2023-12-10 | 2023-03-31 | 3.32 | 2.45 | 3.31 | 2.0 | 0.008 | 1.29 | 3.0 | 0.09 | 18.88 | 0.00 | 2.025 | 25.29 | 2.76 | 6.3 | 93.7 | 0.0 | -1.44 | 0.71 | 0.73 | 0.58 | 1.6 | 0.004 | 0.74 | 0.0 | 0.04 | 19.07 | 0.00 | 1.800 | 20.89 | 0.73 | 5.5 | 94.5 | 0.1 | -0.91 | 0.52 | 0.68 | 0.66 | 0.73 | 13314 | 1548 | 6 | 44 | 4 | 0 | 0 | logfile |
✔ | 7DUR | 30867 | 2023-12-08 | 2021-01-11 | 3.3 | 4.35 | — | 3.8 | 0.007 | 1.12 | 0.0 | 0.07 | 15.69 | 0.01 | 2.048 | 13.63 | 4.61 | 4.0 | 96.0 | 0.0 | -2.47 | 0.63 | 0.67 | 0.58 | 3.8 | 0.004 | 0.76 | 0.0 | 0.04 | 16.55 | 0.00 | 2.111 | 23.83 | 0.41 | 4.7 | 95.3 | 0.0 | 0.09 | 1.03 | 0.65 | 0.76 | 0.56 | 9211 | 1126 | 5 | 0 | 7 | 0 | 0 | logfile |
✔ | 8JDA | 36076 | 2023-12-08 | 2023-05-13 | 3.67 | 3.84 | 3.41 | 3.8 | 0.004 | 0.78 | 0.0 | 0.04 | 14.02 | 0.00 | 2.176 | 14.34 | 0.14 | 5.7 | 94.2 | 0.1 | -1.44 | 0.58 | 0.70 | 0.59 | 3.8 | 0.003 | 0.70 | 0.0 | 0.04 | 16.22 | 0.00 | 2.213 | 14.94 | 0.43 | 5.0 | 95.0 | 0.0 | -0.10 | 0.48 | 0.58 | 0.70 | 0.59 | 6526 | 848 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6NTS | 0510 | 2023-12-09 | 2019-01-30 | 3.63 | 4.31 | 2.98 | 3.6 | 0.016 | 0.51 | 0.0 | 0.03 | 13.24 | 0.00 | 1.917 | 2.06 | 0.00 | 3.8 | 96.2 | 0.0 | -2.08 | 0.89 | 0.77 | 0.59 | 3.7 | 0.002 | 0.62 | 0.0 | 0.04 | 15.03 | 0.00 | 2.090 | 8.58 | 0.09 | 2.4 | 97.6 | 0.0 | 0.74 | 2.30 | 0.92 | 0.85 | 1.21 | 9956 | 1240 | 5 | 0 | 3 | 0 | 0 | logfile |
✔ | 7S8U | 24922 | 2023-12-07 | 2021-09-19 | 3.7 | 3.97 | — | 3.9 | 0.008 | 1.19 | 1.0 | 0.07 | 14.00 | 0.01 | 2.243 | 13.10 | 4.56 | 8.3 | 90.5 | 1.2 | -1.14 | 0.48 | 0.59 | 0.59 | 3.9 | 0.004 | 0.86 | 0.0 | 0.05 | 16.32 | 0.01 | 2.069 | 18.36 | 0.88 | 9.6 | 89.9 | 0.5 | -0.50 | 1.41 | 0.51 | 0.62 | 0.54 | 5210 | 667 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BKB | 12206 | 2023-12-09 | 2021-01-15 | 3.5 | 3.74 | — | 3.7 | 0.012 | 1.38 | 48.0 | 0.10 | 16.76 | 0.01 | 1.954 | 10.82 | 3.80 | 7.7 | 92.1 | 0.2 | -1.67 | 0.53 | 0.64 | 0.59 | 3.7 | 0.003 | 0.72 | 0.0 | 0.05 | 17.04 | 0.00 | 1.972 | 13.52 | 0.34 | 5.1 | 94.9 | 0.0 | -0.69 | 1.95 | 0.58 | 0.79 | 0.81 | 64126 | 8220 | 44 | 0 | 68 | 0 | 0 | logfile |
✔ | 8DTB | 27695 | 2023-12-10 | 2022-07-25 | 3.14 | 3.27 | 3.11 | 3.2 | 0.003 | 0.62 | 0.0 | 0.04 | 18.08 | 0.00 | 2.175 | 9.05 | 0.99 | 1.9 | 98.1 | 0.0 | 1.18 | 0.66 | 0.74 | 0.59 | 3.2 | 0.003 | 0.59 | 0.0 | 0.04 | 17.18 | 0.00 | 2.145 | 8.86 | 0.68 | 2.9 | 97.1 | 0.0 | 0.75 | 0.52 | 0.70 | 0.80 | 1.33 | 13724 | 1765 | 9 | 0 | 7 | 0 | 0 | logfile |
✔ | 7WLA | 32579 | 2023-12-09 | 2022-01-12 | 3.76 | 3.09 | 3.72 | 3.2 | 0.002 | 0.44 | 0.0 | 0.04 | 8.82 | 0.00 | 2.197 | 6.98 | 4.01 | 5.1 | 94.9 | 0.0 | -4.06 | 0.70 | 0.68 | 0.60 | 3.0 | 0.004 | 0.86 | 0.0 | 0.05 | 14.37 | 0.01 | 2.047 | 20.36 | 0.45 | 7.1 | 92.9 | 0.1 | -1.20 | 1.39 | 0.72 | 0.71 | 0.74 | 10193 | 1327 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7P1i | 13161 | 2023-12-08 | 2021-07-01 | 3.15 | 4.49 | 3.18 | 4.4 | 0.002 | 0.57 | 0.0 | 0.04 | 11.18 | 0.00 | 2.265 | 8.39 | 5.90 | 4.3 | 95.7 | 0.0 | 3.38 | 0.55 | 0.71 | 0.60 | 4.3 | 0.004 | 1.18 | 1.0 | 0.05 | 14.98 | 0.00 | 2.140 | 21.37 | 0.14 | 6.1 | 93.9 | 0.0 | 0.34 | 0.96 | 0.57 | 0.72 | 0.46 | 6644 | 884 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7YEG | 33772 | 2023-12-08 | 2022-07-05 | 3.73 | 3.29 | 3.71 | 3.5 | 0.002 | 0.48 | 0.0 | 0.04 | 13.19 | 0.00 | 2.191 | 5.16 | 0.37 | 3.1 | 96.8 | 0.0 | -4.62 | 0.61 | 0.57 | 0.60 | 3.5 | 0.003 | 0.67 | 0.0 | 0.04 | 15.38 | 0.00 | 2.151 | 10.90 | 0.22 | 4.5 | 95.5 | 0.0 | -1.39 | 3.06 | 0.58 | 0.54 | 1.14 | 49974 | 6306 | 24 | 0 | 51 | 0 | 0 | logfile |