Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7BW8	30230	2023-02-17	2020-04-14	3.8	4.16	3.79	4.4	0.009	1.38	0.0	0.07	17.39	0.01	1.974	49.64	0.00	22.3	77.7	0.0	-5.01	0.70	0.66	0.41	4.4	0.003	0.93	0.0	0.05	18.23	0.01	2.200	21.41	0.88	10.6	89.4	0.0	-3.01	2.07	0.68	0.63	0.53	6021	737	3	0	0	0	0	logfile
✔	7M18	23615	2023-02-21	2021-03-12	3.38	4.09	—	4.1	0.007	1.33	0.0	0.05	19.80	0.01	1.728	23.77	0.28	10.4	89.3	0.3	-2.48	0.74	0.73	0.41	4.1	0.003	0.79	0.0	0.04	19.96	0.01	2.078	17.84	0.33	8.5	91.3	0.1	-1.88	0.55	0.75	0.74	0.41	54064	6904	32	8	16	0	0	logfile
✔	7K8V	22732	2023-02-25	2020-09-27	3.8	4.64	—	4.0	0.003	0.59	0.0	0.07	12.91	0.00	2.005	11.42	0.15	4.8	95.1	0.2	-2.90	0.81	0.74	0.42	4.1	0.004	0.69	0.0	0.04	14.71	0.00	2.118	18.31	0.48	6.1	93.8	0.1	-1.45	0.78	0.83	0.80	0.52	26248	3390	20	0	41	0	0	logfile
✔	7B6X	12057	2023-02-19	2020-12-08	3.6	2.59	—	2.5	0.008	1.06	0.0	0.06	14.17	0.01	2.035	44.36	0.09	13.3	86.7	0.0	-2.77	0.75	0.72	0.42	2.5	0.003	0.74	0.0	0.04	16.14	0.00	2.135	23.73	0.34	7.5	92.4	0.1	-1.21	1.36	0.75	0.71	0.06	10470	1290	8	0	0	0	0	logfile
✔	6WVL	21922	2023-02-25	2020-05-06	3.2	3.69	3.05	3.8	0.013	1.98	5.0	0.10	16.20	0.02	1.944	0.63	0.41	1.8	98.2	0.0	-1.96	0.44	0.48	0.43	3.6	0.004	0.67	0.0	0.04	17.33	0.00	1.796	12.42	0.41	3.4	96.6	0.0	-0.06	2.50	0.49	0.74	2.41	26744	1712	8	2	6	0	13046	logfile
✔	6Qi8	4552	2023-02-21	2019-01-18	3.75	3.92	—	10.4	0.004	0.91	0.0	0.05	16.35	0.01	1.999	4.27	0.19	5.5	94.5	0.0	-5.84	0.17	0.02	0.43	9.9	0.003	0.85	0.0	0.04	17.56	0.00	2.143	15.66	0.19	7.7	92.3	0.0	-2.16	1.53	0.32	0.22	0.51	14789	1907	12	0	6	0	0	logfile
✘	6Y5H	10697	2023-02-20	2020-02-25	3.0	3.10	3.04	3.1	0.002	0.56	0.0	0.07	14.94	0.01	2.238	2.93	0.70	4.1	95.9	0.0	-2.50	0.53	0.56	0.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11994	1470	18	0	33	0	0	logfile
✔	6oA9	0665	2023-02-26	2019-03-15	3.9	4.07	4.02	4.0	0.004	0.99	1.0	0.05	14.19	0.01	1.585	10.20	0.45	6.5	93.2	0.2	-5.28	0.75	0.67	0.43	4.0	0.003	0.76	0.0	0.04	15.82	0.00	2.038	13.15	0.29	6.7	93.3	0.0	-1.46	1.65	0.81	0.78	0.85	29006	3718	17	0	12	0	0	logfile
✘	6TM5	10518	2023-02-24	2019-12-03	3.9	4.07	—	4.1	0.010	1.11	0.0	0.05	15.92	0.01	1.619	28.81	0.76	11.9	87.8	0.3	-4.46	0.36	0.48	0.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	63885	8117	23	0	3	0	0	logfile
✔	8AVX	15686	2023-02-18	2022-08-27	3.5	3.71	3.49	3.7	0.008	1.38	0.0	0.08	17.79	0.01	2.316	1.69	4.23	4.5	95.2	0.2	-4.05	0.69	0.67	0.44	3.6	0.003	0.73	0.0	0.04	17.86	0.00	2.183	9.87	0.40	3.7	96.3	0.0	-0.65	1.50	0.71	0.68	1.09	7427	961	4	0	2	0	0	logfile
✔	8GWE	34310	2023-02-24	2022-09-16	2.66	3.19	2.77	16.0	0.009	0.97	5.0	0.06	17.61	0.01	1.065	13.66	5.00	8.4	91.2	0.3	-1.93	0.39	0.09	0.45	10.1	0.003	0.74	0.0	0.04	17.58	0.00	1.950	15.87	3.34	8.5	91.3	0.2	-1.91	1.11	0.44	0.22	0.12	22040	2668	15	56	10	1	0	logfile
✔	7YG0	33803	2023-02-20	2022-07-09	3.75	4.38	3.91	6.5	0.005	0.93	1.0	0.05	14.36	0.00	2.222	25.32	1.19	8.0	92.0	0.0	-1.07	0.59	0.54	0.45	6.5	0.004	0.95	0.0	0.05	15.92	0.00	2.114	27.70	0.49	5.4	94.5	0.1	-0.73	2.16	0.67	0.73	0.24	13336	1708	2	0	0	0	0	logfile
✔	7WTB	32775	2023-02-26	2022-02-04	3.7	4.54	—	3.7	0.008	0.92	2.0	0.05	14.20	0.00	2.109	10.09	1.76	6.9	92.9	0.2	0.09	0.89	0.74	0.45	3.8	0.003	0.71	0.0	0.04	15.77	0.00	2.164	13.01	0.30	6.5	93.4	0.1	-0.01	1.43	0.91	0.81	1.00	28480	3661	8	0	8	0	0	logfile
✔	3J9X	6310	2023-02-27	2015-03-21	3.8	3.84	—	3.8	0.014	1.24	0.0	0.08	13.09	0.02	2.369	3.42	0.48	2.8	95.6	1.6	-0.65	0.51	0.57	0.45	3.7	0.004	0.74	0.0	0.04	16.24	0.01	2.066	20.46	0.31	2.0	98.0	0.0	1.89	1.20	0.63	0.78	1.89	70702	7424	60	696	0	0	0	logfile
✔	7WTA	32773	2023-02-23	2022-02-04	3.9	6.12	—	3.5	0.008	0.82	0.0	0.04	13.23	0.00	2.171	19.56	0.00	8.2	91.8	0.0	-0.51	0.89	0.81	0.46	3.5	0.004	0.78	0.0	0.04	14.73	0.00	2.043	25.59	0.27	9.2	90.7	0.1	-0.75	0.46	0.90	0.82	0.29	21080	2736	8	0	4	0	0	logfile
✔	6VQU	21357	2023-02-22	2020-02-05	3.88	4.99	3.94	4.1	0.007	0.94	0.0	0.06	14.62	0.01	2.276	5.09	1.70	3.4	96.6	0.0	-2.26	0.73	0.86	0.46	4.1	0.003	0.72	0.0	0.04	14.96	0.00	2.196	12.02	0.32	2.6	97.4	0.0	2.01	1.05	0.73	0.88	0.26	9156	1178	2	0	0	0	0	logfile
✔	6R9B	4769	2023-02-25	2019-04-03	3.8	3.76	—	3.6	0.003	0.88	1.0	0.06	9.76	0.01	2.296	4.54	0.70	8.0	91.8	0.2	-4.57	0.63	0.51	0.46	3.7	0.003	0.82	0.0	0.05	15.16	0.00	2.059	14.08	0.48	8.4	91.5	0.1	-1.79	1.62	0.69	0.60	0.94	25880	3401	7	0	0	0	0	logfile
✔	5A8L	3099	2023-02-20	2015-07-16	3.8	3.60	—	3.5	0.004	0.67	0.0	0.02	12.36	0.00	1.435	8.91	0.95	10.3	86.8	2.9	-2.06	0.18	0.43	0.47	3.5	0.005	0.82	0.0	0.04	17.26	0.01	2.034	19.30	1.33	10.7	88.1	1.1	-2.35	1.54	0.23	0.63	0.72	12264	624	9	347	0	0	0	logfile
✔	8DG7	27417	2023-02-21	2022-06-23	3.32	3.61	3.39	3.5	0.007	1.11	1.0	0.06	17.48	0.01	1.980	8.83	1.24	8.7	91.2	0.1	-2.75	0.70	0.70	0.47	3.5	0.003	0.66	0.0	0.04	17.26	0.00	1.930	14.66	0.12	6.7	93.1	0.2	-0.62	0.94	0.71	0.71	0.47	15609	1816	7	47	9	0	0	logfile
✔	7WU7	32823	2023-02-25	2022-02-07	3.85	3.66	4.04	3.8	0.005	0.81	0.0	0.05	14.10	0.00	2.146	18.27	0.01	5.3	94.7	0.1	-1.14	0.70	0.65	0.47	3.8	0.003	0.81	0.0	0.05	16.42	0.00	2.125	19.61	0.46	5.8	94.2	0.0	-1.17	0.54	0.70	0.67	0.20	67031	8727	26	0	4	0	0	logfile

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