Table showing results for August 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	1oED	1044	2021-08-07	2003-03-24	4.0	3.94	—	10.4	0.014	2.29	3.0	0.10	17.23	0.01	1.183	221.91	19.76	5.2	92.7	2.1	-3.67	0.39	0.18	—	9.0	0.004	1.03	0.0	0.05	15.39	0.01	2.271	19.76	0.35	1.5	98.5	0.0	2.27	4.39	0.63	0.45	—	4926	636	5	0	0	0	0	logfile
✘	2XEA	1730	2021-08-09	2010-05-12	4.6	4.10	—	4.2	0.012	2.14	0.0	0.12	20.46	0.02	1.226	159.82	3.68	8.6	90.1	1.3	-3.51	0.39	0.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62671	7546	98	147	0	0	0	logfile
✘	3A5X	1641	2021-08-07	2009-08-13	4.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-4.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3616	494	1	0	0	0	0	logfile
✔	3iZK	5247	2021-08-09	2010-10-29	4.9	4.48	—	7.1	0.014	1.48	16.0	0.08	12.45	0.02	2.461	2.11	0.77	2.0	97.5	0.4	-1.62	0.65	0.48	—	6.9	0.003	0.75	0.0	0.04	13.50	0.00	2.178	24.16	0.00	2.8	97.2	0.0	0.27	1.97	0.80	0.69	—	58448	7856	16	0	0	0	0	logfile
✔	3J03	5138	2021-08-09	2011-02-10	4.8	4.09	—	6.5	0.014	1.51	16.0	0.08	13.07	0.02	2.471	3.26	1.78	3.5	96.3	0.2	-1.89	0.66	0.44	—	4.9	0.003	0.82	0.0	0.05	14.03	0.00	2.291	20.86	0.00	2.5	97.3	0.2	0.05	1.46	0.80	0.63	—	58640	7856	16	0	0	0	0	logfile
✔	3J06	5185	2021-08-09	2011-04-26	3.3	2.88	—	3.5	0.011	2.34	441.0	0.15	21.08	0.01	1.607	78.71	14.71	21.1	65.4	13.5	-7.24	0.56	0.80	1.90	3.0	0.005	0.99	0.0	0.04	20.13	0.01	2.190	17.77	1.20	6.7	91.6	1.7	-2.99	1.30	0.56	0.79	2.30	62916	7595	98	147	0	0	0	logfile
✔	3J0G	5275	2021-08-08	2011-07-21	4.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	108000	14160	240	0	0	0	0	logfile
✔	3J0G	5276	2021-08-08	2011-07-21	4.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	108000	14160	240	0	0	0	0	logfile
✔	3J1B	5391	2021-08-09	2012-02-06	4.9	5.01	—	4.8	0.034	3.60	502.0	0.21	17.58	0.03	2.352	1.67	4.08	6.4	90.1	3.5	-3.28	0.67	0.52	—	4.8	0.003	0.78	0.0	0.05	15.00	0.01	2.175	16.33	0.00	5.2	94.0	0.8	1.13	2.24	0.75	0.63	—	62992	8304	16	0	0	0	0	logfile
✔	3J1Q	5415	2021-08-27	2012-04-30	4.5	4.62	—	4.6	0.009	1.72	0.0	0.10	17.68	0.01	2.064	61.26	14.85	8.2	89.9	1.9	-4.91	0.74	0.64	—	4.6	0.004	0.87	0.0	0.04	13.93	0.01	1.997	18.18	0.00	6.9	93.1	0.0	-1.66	1.30	0.77	0.71	—	248160	31020	60	0	0	0	0	logfile
✔	3J2P	5499	2021-08-07	2012-11-30	3.6	3.28	—	3.4	0.009	1.92	0.0	0.12	17.49	0.02	2.155	106.12	20.13	29.7	46.3	24.1	-7.75	0.42	0.79	1.08	3.3	0.005	0.95	0.0	0.05	18.13	0.01	1.915	70.82	1.89	22.6	74.2	3.3	-4.29	0.96	0.39	0.73	0.90	9890	1134	6	0	6	0	1086	logfile
✔	3J4P	5681	2021-08-30	2013-09-10	4.8	5.14	—	5.0	0.013	1.80	0.0	0.09	16.32	0.01	1.415	77.35	8.64	11.8	83.9	4.3	-5.11	0.90	0.89	—	5.0	0.003	0.77	0.0	0.04	13.81	0.00	2.109	16.50	0.93	4.7	95.3	0.0	-1.89	0.85	0.90	0.86	—	254580	31020	60	0	180	60	0	logfile
✔	3J5P	5778	2021-08-08	2013-10-28	3.275	3.63	3.36	3.4	0.011	1.51	0.0	0.09	21.59	0.01	1.156	77.50	27.79	5.7	94.3	0.0	-0.42	0.62	0.55	0.56	3.3	0.003	0.87	0.0	0.04	17.13	0.00	2.163	16.05	0.35	5.3	94.6	0.1	0.64	2.10	0.74	0.79	0.63	18636	2324	4	0	44	0	0	logfile
✘	3J5Q	5776	2021-08-08	2013-10-28	3.8	4.64	—	7.1	0.010	1.45	0.0	0.09	20.92	0.01	0.275	102.90	29.72	6.4	93.1	0.5	-0.53	0.58	0.44	-0.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18264	2324	8	0	168	0	0	logfile
✔	3J5R	5777	2021-08-08	2013-10-28	4.2	4.88	—	7.2	0.011	1.56	0.0	0.09	20.25	0.01	1.204	82.07	28.64	7.8	91.0	1.2	-0.91	0.58	0.45	—	7.3	0.003	0.86	0.0	0.04	13.12	0.00	2.153	19.68	0.00	6.7	92.9	0.4	0.48	1.86	0.74	0.74	—	17564	2324	4	0	44	0	0	logfile
✔	3J63	5830	2021-08-08	2013-12-05	3.8	3.96	—	3.9	0.005	1.25	0.0	0.07	17.40	0.00	2.184	59.15	7.31	10.3	86.7	3.1	-4.14	0.71	0.65	1.05	3.9	0.004	1.02	0.0	0.04	19.20	0.01	2.144	17.36	1.55	2.3	97.7	0.0	-0.33	1.97	0.80	0.77	0.98	10590	1365	15	0	0	0	0	logfile
✔	3J6B	2566	2021-08-12	2014-01-22	3.2	3.23	—	3.2	0.010	1.18	13.0	0.10	18.54	0.01	0.862	5.65	10.99	6.4	92.0	1.6	-1.19	0.63	0.78	2.15	3.2	0.006	0.71	0.0	0.05	17.56	0.01	1.711	9.52	0.92	6.1	93.6	0.3	-0.05	0.81	0.75	0.85	2.46	195137	6712	46	2733	113	0	83818	logfile
✔	3J6E	5895	2021-08-09	2014-02-18	4.7	4.79	—	4.7	0.021	2.61	18.0	0.13	13.21	0.01	1.539	5.49	0.28	3.4	96.2	0.4	-0.68	0.62	0.66	—	4.7	0.003	0.71	0.0	0.04	14.24	0.00	1.933	17.42	0.02	2.6	97.4	0.0	0.68	2.19	0.69	0.80	—	60984	7686	54	0	36	72	0	logfile
✔	3J6F	5896	2021-08-09	2014-02-19	4.9	4.97	—	4.9	0.021	2.65	64.0	0.14	14.01	0.01	2.069	5.60	0.14	3.1	96.3	0.6	-1.05	0.62	0.67	—	4.9	0.003	0.75	0.0	0.05	14.31	0.01	1.873	19.33	0.05	3.0	97.0	0.0	0.40	2.27	0.68	0.82	—	60903	7686	45	9	18	36	0	logfile
✔	3J6J	5925	2021-08-08	2014-03-13	3.64	4.17	—	3.9	0.007	1.41	0.0	0.06	15.90	0.00	1.578	32.19	6.10	4.1	95.0	0.9	-1.46	0.86	0.83	1.23	3.9	0.005	1.05	0.0	0.05	17.92	0.01	2.115	24.90	1.16	2.9	96.8	0.3	0.01	2.62	0.89	0.88	1.40	6344	776	8	0	0	0	0	logfile

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