Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	1oED	1044	2023-08-09	2003-03-24	4.0	3.94	—	10.4	0.014	2.29	3.0	0.10	17.23	0.01	1.183	224.94	19.76	5.2	92.7	2.1	-3.67	0.39	0.18	—	9.0	0.004	1.06	0.0	0.05	15.88	0.01	2.224	22.69	0.69	2.3	97.7	0.0	1.70	2.92	0.63	0.45	—	4926	636	5	0	0	0	0	logfile
✘	2XEA	1730	2023-08-12	2010-05-12	4.6	4.10	—	4.2	0.012	2.12	0.0	0.12	20.46	0.02	1.226	2.63	3.68	8.6	90.1	1.3	-3.51	0.39	0.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62671	7546	98	147	0	0	0	logfile
✘	3A5X	1641	2023-08-09	2009-08-13	4.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-4.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3616	494	1	0	0	0	0	logfile
✔	3iZK	5247	2023-08-11	2010-10-29	4.9	4.48	—	7.1	0.014	1.48	16.0	0.08	12.45	0.02	2.461	2.38	0.77	2.0	97.5	0.4	-1.62	0.65	0.48	—	6.9	0.003	0.75	0.0	0.04	13.81	0.00	2.233	21.48	0.00	2.7	97.3	0.0	-0.42	1.96	0.75	0.55	—	58448	7856	16	0	0	0	0	logfile
✔	3J03	5138	2023-08-11	2011-02-10	4.8	4.09	—	6.5	0.014	1.51	16.0	0.08	13.07	0.02	2.471	3.31	1.78	3.5	96.3	0.2	-1.89	0.66	0.44	—	5.8	0.003	0.82	0.0	0.04	14.05	0.01	2.286	21.54	0.00	3.1	96.9	0.0	-0.66	1.46	0.82	0.68	—	58640	7856	16	0	0	0	0	logfile
✔	3J06	5185	2023-08-12	2011-04-26	3.3	2.88	—	3.5	0.011	2.34	441.0	0.15	21.08	0.01	1.607	79.64	14.71	21.1	65.4	13.5	-7.24	0.56	0.80	1.90	3.2	0.003	0.88	0.0	0.04	20.32	0.01	2.209	17.76	0.98	6.9	91.2	1.8	-3.04	1.28	0.55	0.78	2.20	62916	7595	98	147	0	0	0	logfile
✔	3J1B	5391	2023-08-12	2012-02-06	4.9	5.01	—	4.8	0.034	3.60	502.0	0.21	17.58	0.03	2.352	1.73	4.08	6.4	90.1	3.5	-3.28	0.67	0.51	—	4.8	0.003	0.79	0.0	0.05	14.59	0.01	2.170	16.48	0.00	4.4	95.0	0.6	0.64	2.25	0.79	0.70	—	62992	8304	16	0	0	0	0	logfile
✔	3J2P	5499	2023-08-11	2012-11-30	3.6	3.28	—	3.4	0.010	1.92	0.0	0.12	17.56	0.02	2.155	110.32	20.13	29.7	46.3	24.1	-7.75	0.42	0.79	1.08	3.3	0.003	0.89	0.0	0.04	17.84	0.00	1.911	69.53	1.47	18.7	77.9	3.4	-4.26	0.93	0.38	0.72	0.85	9890	1134	8	0	6	0	1086	logfile
✔	3J5P	5778	2023-08-15	2013-10-28	3.275	3.63	3.36	3.4	0.011	1.53	0.0	0.09	21.59	0.01	1.156	79.06	27.79	5.7	94.3	0.0	-0.42	0.62	0.55	0.56	3.4	0.004	0.91	0.0	0.04	16.97	0.00	2.085	17.32	0.41	5.3	94.6	0.1	0.51	2.09	0.74	0.79	0.11	18636	2324	4	0	44	0	0	logfile
✘	3J5Q	5776	2023-08-15	2013-10-28	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18556	2448	8	0	44	0	292	logfile
✔	3J5R	5777	2023-08-15	2013-10-28	4.2	4.88	—	7.2	0.011	1.57	0.0	0.09	20.25	0.01	1.204	84.36	28.64	7.8	91.0	1.2	-0.91	0.58	0.45	—	7.3	0.003	0.88	0.0	0.04	13.21	0.00	2.219	17.86	0.00	6.4	93.2	0.4	0.16	1.78	0.67	0.52	—	17564	2324	4	0	44	0	0	logfile
✔	3J63	5830	2023-08-11	2013-12-05	3.8	3.96	—	3.9	0.005	1.25	0.0	0.07	17.40	0.00	2.184	54.83	7.31	10.3	86.7	3.1	-4.14	0.71	0.65	1.05	3.9	0.004	0.99	0.0	0.04	18.43	0.00	2.177	16.34	1.00	1.6	98.4	0.0	-0.41	1.91	0.79	0.77	1.22	10590	1365	15	0	0	0	0	logfile
✔	3J6E	5895	2023-08-11	2014-02-18	4.7	4.79	—	4.7	0.021	2.60	18.0	0.13	13.25	0.01	1.539	5.62	0.28	3.4	96.2	0.4	-0.68	0.62	0.66	—	4.7	0.003	0.72	0.0	0.04	14.09	0.00	1.877	18.82	0.02	2.6	97.4	0.0	0.35	2.15	0.69	0.79	—	60984	7686	54	0	36	72	0	logfile
✔	3J6F	5896	2023-08-11	2014-02-19	4.9	4.97	—	4.9	0.021	2.64	64.0	0.14	14.01	0.01	2.069	5.57	0.14	3.1	96.3	0.6	-1.05	0.62	0.66	—	4.9	0.003	0.75	0.0	0.05	14.43	0.01	1.807	20.81	0.06	2.9	97.1	0.0	0.36	2.79	0.68	0.81	—	60903	7686	45	9	18	36	0	logfile
✔	3J6J	5925	2023-08-12	2014-03-13	3.64	4.17	—	3.9	0.007	1.41	0.0	0.06	15.90	0.00	1.578	33.23	6.10	4.1	95.0	0.9	-1.46	0.86	0.83	1.23	3.9	0.005	1.04	0.0	0.05	17.98	0.01	2.010	25.78	1.31	2.5	97.2	0.3	-0.15	2.62	0.89	0.88	1.91	6344	776	8	0	0	0	0	logfile
✔	3J6Q	5926	2023-08-25	2014-03-20	3.8	4.07	—	4.1	0.010	1.16	0.0	0.06	10.65	0.01	1.279	19.23	0.64	11.7	84.1	4.2	-4.60	0.46	0.59	1.31	4.0	0.003	0.84	0.0	0.05	14.93	0.00	2.028	11.10	0.36	9.9	89.4	0.6	-2.74	2.90	0.55	0.74	1.52	42575	5300	10	0	0	0	0	logfile
✔	3J79	2660	2023-08-16	2014-06-02	3.2	3.25	3.13	3.2	0.007	1.31	43.0	0.10	19.59	0.01	1.505	4.40	11.66	7.2	90.4	2.4	-1.45	0.53	0.71	0.94	3.2	0.003	0.64	0.0	0.04	17.82	0.01	1.892	13.81	0.62	5.4	94.1	0.5	-0.13	0.96	0.65	0.85	1.71	124514	6244	55	3460	168	0	0	logfile
✔	3J7A	2660	2023-08-16	2014-06-03	3.2	3.24	3.33	3.2	0.008	1.39	49.0	0.10	19.81	0.01	1.715	4.56	15.41	10.5	85.4	4.2	-2.49	0.31	0.55	-0.02	3.2	0.003	0.70	0.0	0.04	18.04	0.01	1.866	17.03	1.05	8.0	90.8	1.2	-1.89	2.71	0.40	0.77	1.02	68866	4106	35	1682	69	0	0	logfile
✔	3J7H	5995	2023-08-22	2014-06-30	3.2	2.58	3.45	3.4	0.005	1.17	0.0	0.06	17.98	0.01	1.085	132.80	12.24	2.5	97.4	0.2	2.39	0.77	0.79	2.04	3.4	0.006	0.81	0.0	0.05	17.42	0.00	1.990	15.82	0.89	3.9	96.1	0.0	-0.35	1.64	0.79	0.87	2.62	32828	4088	8	0	4	0	0	logfile
✔	3J7Y	2762	2023-08-23	2014-08-26	3.4	3.45	—	3.4	0.008	1.34	31.0	0.10	19.93	0.01	1.708	8.61	8.93	7.9	89.9	2.2	-1.78	0.72	0.83	2.09	3.4	0.004	0.73	0.0	0.04	18.58	0.01	1.825	11.81	0.79	7.1	92.2	0.7	-0.31	1.55	0.74	0.85	1.99	94121	7469	56	1530	208	0	0	logfile

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