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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 1oED | 1044 | 2021-01-05 | 2003-03-24 | 4.0 | 3.94 | — | 10.4 | 0.014 | 2.29 | 3.0 | 0.10 | 17.23 | 0.01 | 1.183 | 221.91 | 19.76 | 5.2 | 92.7 | 2.1 | -3.67 | 0.39 | 0.18 | — | 8.9 | 0.003 | 0.86 | 0.0 | 0.04 | 11.48 | 0.01 | 2.194 | 16.72 | 0.00 | 1.9 | 98.1 | 0.0 | 2.24 | 3.88 | 0.65 | 0.41 | — | 4926 | 636 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 2XEA | 1730 | 2021-01-08 | 2010-05-12 | 4.6 | 4.10 | — | 4.2 | 0.012 | 2.14 | 0.0 | 0.12 | 20.46 | 0.02 | 1.226 | 159.82 | 3.68 | 8.6 | 90.1 | 1.3 | -3.51 | 0.39 | 0.42 | — | 4.2 | 0.006 | 1.25 | 0.0 | 0.05 | 19.47 | 0.03 | 2.111 | 28.77 | 14.71 | 4.6 | 95.4 | 0.0 | -2.85 | 2.52 | 0.43 | 0.50 | — | 62671 | 7546 | 98 | 147 | 0 | 0 | 0 | logfile |
✘ | 3A5X | 1641 | 2021-01-05 | 2009-08-13 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3616 | 494 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 3iZK | 5247 | 2021-01-08 | 2010-10-29 | 4.9 | 4.48 | — | 7.1 | 0.014 | 1.48 | 16.0 | 0.08 | 12.45 | 0.02 | 2.461 | 2.11 | 0.77 | 2.0 | 97.5 | 0.4 | -1.62 | 0.65 | 0.48 | — | 6.9 | 0.003 | 0.72 | 0.0 | 0.04 | 13.29 | 0.00 | 2.242 | 19.11 | 0.03 | 2.2 | 97.5 | 0.2 | 0.23 | 1.98 | 0.81 | 0.74 | — | 58448 | 7856 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J03 | 5138 | 2021-01-08 | 2011-02-10 | 4.8 | 4.09 | — | 6.5 | 0.014 | 1.51 | 16.0 | 0.08 | 13.07 | 0.02 | 2.471 | 3.26 | 1.78 | 3.5 | 96.3 | 0.2 | -1.89 | 0.66 | 0.44 | — | 4.9 | 0.004 | 0.85 | 0.0 | 0.05 | 14.15 | 0.00 | 2.256 | 22.04 | 0.11 | 2.4 | 97.6 | 0.0 | -0.03 | 1.48 | 0.82 | 0.67 | — | 58640 | 7856 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J06 | 5185 | 2021-01-08 | 2011-04-26 | 3.3 | 2.88 | — | 3.5 | 0.011 | 2.34 | 441.0 | 0.15 | 21.08 | 0.01 | 1.607 | 78.71 | 14.71 | 21.1 | 65.4 | 13.5 | -7.24 | 0.56 | 0.80 | 1.90 | 3.2 | 0.003 | 0.81 | 0.0 | 0.04 | 17.73 | 0.01 | 2.219 | 15.71 | 0.84 | 5.4 | 92.7 | 1.9 | -2.47 | 1.60 | 0.54 | 0.75 | 2.52 | 62916 | 7595 | 98 | 147 | 0 | 0 | 0 | logfile |
✔ | 3J0G | 5275 | 2021-01-07 | 2011-07-21 | 4.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 108000 | 14160 | 240 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J0G | 5276 | 2021-01-07 | 2011-07-21 | 4.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 108000 | 14160 | 240 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J1B | 5391 | 2021-01-08 | 2012-02-06 | 4.9 | 5.01 | — | 4.8 | 0.034 | 3.60 | 502.0 | 0.21 | 17.58 | 0.03 | 2.352 | 1.67 | 4.08 | 6.4 | 90.1 | 3.5 | -3.28 | 0.67 | 0.52 | — | 4.8 | 0.003 | 0.79 | 0.0 | 0.05 | 14.92 | 0.01 | 2.163 | 13.69 | 0.00 | 5.4 | 94.0 | 0.6 | 0.97 | 2.23 | 0.78 | 0.69 | — | 62992 | 8304 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J1Q | 5415 | 2021-01-17 | 2012-04-30 | 4.5 | 4.62 | — | 4.6 | 0.009 | 1.72 | 0.0 | 0.10 | 17.68 | 0.01 | 2.064 | 61.26 | 14.85 | 8.2 | 89.9 | 1.9 | -4.91 | 0.74 | 0.64 | — | 4.6 | 0.003 | 0.76 | 0.0 | 0.04 | 14.54 | 0.01 | 2.042 | 15.88 | 0.00 | 5.4 | 94.6 | 0.0 | -1.41 | 1.29 | 0.78 | 0.72 | — | 248160 | 31020 | 60 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J2P | 5499 | 2021-01-05 | 2012-11-30 | 3.6 | 3.28 | — | 3.4 | 0.009 | 1.92 | 0.0 | 0.12 | 17.49 | 0.02 | 2.155 | 106.12 | 20.13 | 29.7 | 46.3 | 24.1 | -7.75 | 0.42 | 0.79 | 1.08 | 3.4 | 0.003 | 0.85 | 0.0 | 0.04 | 15.17 | 0.00 | 1.891 | 70.25 | 0.10 | 18.4 | 78.3 | 3.3 | -3.88 | 1.04 | 0.39 | 0.71 | 1.67 | 9890 | 1134 | 6 | 0 | 6 | 0 | 1086 | logfile |
✔ | 3J4P | 5681 | 2021-01-18 | 2013-09-10 | 4.8 | 5.14 | — | 5.0 | 0.013 | 1.80 | 0.0 | 0.09 | 16.32 | 0.01 | 1.415 | 77.35 | 8.64 | 11.8 | 83.9 | 4.3 | -5.11 | 0.90 | 0.89 | — | 5.0 | 0.003 | 0.80 | 0.0 | 0.04 | 13.96 | 0.00 | 2.092 | 19.38 | 0.84 | 6.1 | 93.9 | 0.0 | -2.22 | 0.81 | 0.90 | 0.87 | — | 254580 | 31020 | 60 | 0 | 180 | 60 | 0 | logfile |
✔ | 3J5P | 5778 | 2021-01-06 | 2013-10-28 | 3.275 | 3.63 | 3.36 | 3.4 | 0.011 | 1.51 | 0.0 | 0.09 | 21.59 | 0.01 | 1.156 | 77.50 | 27.79 | 5.7 | 94.3 | 0.0 | -0.42 | 0.62 | 0.55 | 0.56 | 3.4 | 0.003 | 0.82 | 0.0 | 0.04 | 14.08 | 0.00 | 2.152 | 14.32 | 0.00 | 5.1 | 94.8 | 0.1 | 0.98 | 2.43 | 0.73 | 0.78 | 0.43 | 18636 | 2324 | 4 | 0 | 44 | 0 | 0 | logfile |
✘ | 3J5Q | 5776 | 2021-01-06 | 2013-10-28 | 3.8 | 4.64 | — | 7.1 | 0.010 | 1.45 | 0.0 | 0.09 | 20.92 | 0.01 | 0.275 | 102.90 | 29.72 | 6.4 | 93.1 | 0.5 | -0.53 | 0.58 | 0.44 | -0.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18264 | 2324 | 8 | 0 | 168 | 0 | 0 | logfile |
✔ | 3J5R | 5777 | 2021-01-06 | 2013-10-28 | 4.2 | 4.88 | — | 7.2 | 0.011 | 1.56 | 0.0 | 0.09 | 20.25 | 0.01 | 1.204 | 82.07 | 28.64 | 7.8 | 91.0 | 1.2 | -0.91 | 0.58 | 0.45 | — | 7.3 | 0.003 | 0.89 | 0.0 | 0.04 | 13.19 | 0.00 | 2.192 | 19.83 | 0.06 | 7.0 | 92.6 | 0.3 | 0.23 | 1.92 | 0.74 | 0.74 | — | 17564 | 2324 | 4 | 0 | 44 | 0 | 0 | logfile |
✔ | 3J63 | 5830 | 2021-01-05 | 2013-12-05 | 3.8 | 3.96 | — | 3.9 | 0.005 | 1.25 | 0.0 | 0.07 | 17.40 | 0.00 | 2.184 | 59.15 | 7.31 | 10.3 | 86.7 | 3.1 | -4.14 | 0.71 | 0.65 | 1.05 | 3.9 | 0.004 | 0.85 | 0.0 | 0.04 | 15.04 | 0.01 | 2.072 | 17.73 | 0.00 | 2.8 | 97.2 | 0.0 | -0.47 | 1.96 | 0.79 | 0.76 | 1.22 | 10590 | 1365 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J6B | 2566 | 2021-01-16 | 2014-01-22 | 3.2 | 3.23 | — | 3.2 | 0.010 | 1.18 | 13.0 | 0.10 | 18.54 | 0.01 | 0.862 | 5.65 | 10.99 | 6.4 | 92.0 | 1.6 | -1.19 | 0.63 | 0.78 | 2.15 | 3.2 | 0.005 | 0.67 | 0.0 | 0.05 | 16.54 | 0.01 | 1.726 | 9.21 | 0.02 | 6.4 | 93.3 | 0.3 | 0.11 | 0.84 | 0.74 | 0.82 | 2.84 | 195137 | 6712 | 46 | 2733 | 113 | 0 | 83818 | logfile |
✔ | 3J6E | 5895 | 2021-01-08 | 2014-02-18 | 4.7 | 4.79 | — | 4.7 | 0.022 | 2.60 | 18.0 | 0.13 | 13.27 | 0.01 | 1.539 | 5.49 | 0.28 | 3.4 | 96.2 | 0.4 | -0.68 | 0.62 | 0.66 | — | 4.7 | 0.003 | 0.72 | 0.0 | 0.04 | 14.56 | 0.00 | 1.927 | 17.97 | 0.02 | 2.9 | 97.1 | 0.0 | 0.62 | 2.17 | 0.70 | 0.80 | — | 60984 | 7686 | 54 | 0 | 36 | 72 | 0 | logfile |
✔ | 3J6F | 5896 | 2021-01-08 | 2014-02-19 | 4.9 | 4.97 | — | 4.9 | 0.021 | 2.65 | 64.0 | 0.14 | 14.01 | 0.01 | 2.069 | 5.60 | 0.14 | 3.1 | 96.3 | 0.6 | -1.05 | 0.62 | 0.67 | — | 4.9 | 0.004 | 0.76 | 0.0 | 0.05 | 14.61 | 0.01 | 1.853 | 21.77 | 0.05 | 3.2 | 96.8 | 0.0 | 0.35 | 2.26 | 0.70 | 0.82 | — | 60903 | 7686 | 45 | 9 | 18 | 36 | 0 | logfile |
✔ | 3J6J | 5925 | 2021-01-05 | 2014-03-13 | 3.64 | 4.17 | — | 3.9 | 0.007 | 1.41 | 0.0 | 0.06 | 15.90 | 0.00 | 1.578 | 32.19 | 6.10 | 4.1 | 95.0 | 0.9 | -1.46 | 0.86 | 0.83 | 1.23 | 3.9 | 0.004 | 0.81 | 0.0 | 0.04 | 12.62 | 0.01 | 2.117 | 17.94 | 0.15 | 3.3 | 96.4 | 0.3 | 0.98 | 1.75 | 0.88 | 0.88 | 2.61 | 6344 | 776 | 8 | 0 | 0 | 0 | 0 | logfile |