Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	1oED	1044	2022-07-03	2003-03-24	4.0	3.94	—	10.4	0.014	2.29	3.0	0.10	17.23	0.01	1.183	225.04	19.76	5.2	92.7	2.1	-3.67	0.39	0.18	—	9.0	0.004	1.03	0.0	0.05	15.86	0.01	2.151	21.91	0.52	2.1	97.9	0.0	1.73	2.85	0.63	0.45	—	4926	636	5	0	0	0	0	logfile
✘	2XEA	1730	2022-07-03	2010-05-12	4.6	4.10	—	4.2	0.012	2.12	0.0	0.12	20.46	0.02	1.226	162.14	3.68	8.6	90.1	1.3	-3.51	0.39	0.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62671	7546	98	147	0	0	0	logfile
✘	3A5X	1641	2022-07-03	2009-08-13	4.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-4.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3616	494	1	0	0	0	0	logfile
✔	3iZK	5247	2022-07-03	2010-10-29	4.9	4.48	—	7.1	0.014	1.48	16.0	0.08	12.45	0.02	2.461	2.79	0.77	2.0	97.5	0.4	-1.62	0.65	0.48	—	6.0	0.003	0.75	0.0	0.04	13.21	0.00	2.241	26.30	0.00	3.5	96.5	0.0	-0.57	1.99	0.82	0.75	—	58448	7856	16	0	0	0	0	logfile
✔	3J03	5138	2022-07-03	2011-02-10	4.8	4.09	—	6.5	0.014	1.51	16.0	0.08	13.07	0.02	2.471	3.45	1.78	3.5	96.3	0.2	-1.89	0.66	0.44	—	4.9	0.003	0.80	0.0	0.04	14.10	0.00	2.218	20.15	0.00	2.9	96.9	0.2	-0.34	1.45	0.83	0.69	—	58640	7856	16	0	0	0	0	logfile
✔	3J06	5185	2022-07-03	2011-04-26	3.3	2.88	—	3.5	0.011	2.34	441.0	0.15	21.08	0.01	1.607	79.64	14.71	21.1	65.4	13.5	-7.24	0.56	0.80	1.90	3.0	0.005	0.92	0.0	0.04	20.49	0.01	2.171	17.58	1.07	8.0	90.2	1.8	-2.96	1.27	0.55	0.79	2.24	62916	7595	98	147	0	0	0	logfile
✔	3J0G	5275	2022-07-03	2011-07-21	4.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	108000	14160	240	0	0	0	0	logfile
✔	3J0G	5276	2022-07-03	2011-07-21	4.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	108000	14160	240	0	0	0	0	logfile
✔	3J1B	5391	2022-07-03	2012-02-06	4.9	5.01	—	4.8	0.034	3.60	502.0	0.21	17.58	0.03	2.352	1.76	4.08	6.4	90.1	3.5	-3.28	0.67	0.51	—	4.8	0.003	0.80	0.0	0.05	14.96	0.01	2.173	13.93	0.00	5.4	93.8	0.8	0.69	2.24	0.78	0.69	—	62992	8304	16	0	0	0	0	logfile
✔	3J2P	5499	2022-07-03	2012-11-30	3.6	3.28	—	3.4	0.009	1.92	0.0	0.12	17.49	0.02	2.155	110.70	20.13	29.7	46.3	24.1	-7.75	0.42	0.79	1.08	3.3	0.004	0.95	0.0	0.05	17.92	0.01	1.899	74.82	1.47	22.8	73.8	3.4	-4.64	0.91	0.39	0.73	1.07	9890	1134	6	0	6	0	1086	logfile
✔	3J5P	5778	2022-07-04	2013-10-28	3.275	3.63	3.36	3.4	0.011	1.53	0.0	0.09	21.59	0.01	1.156	79.28	27.79	5.7	94.3	0.0	-0.42	0.62	0.55	0.56	3.5	0.003	0.88	0.0	0.04	17.12	0.00	2.147	17.88	0.35	5.2	94.8	0.0	0.56	2.07	0.73	0.79	0.76	18636	2324	4	0	44	0	0	logfile
✘	3J5Q	5776	2022-07-04	2013-10-28	3.8	4.64	—	7.1	0.010	1.45	0.0	0.09	20.92	0.01	0.275	105.06	29.72	6.4	93.1	0.5	-0.53	0.58	0.44	-0.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18264	2324	8	0	168	0	0	logfile
✘	3J5R	5777	2022-07-04	2013-10-28	4.2	4.88	—	7.2	0.011	1.57	0.0	0.09	20.25	0.01	1.204	84.60	28.64	7.8	91.0	1.2	-0.91	0.58	0.45	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17564	2324	4	0	44	0	0	logfile
✔	3J63	5830	2022-07-03	2013-12-05	3.8	3.96	—	3.9	0.005	1.25	0.0	0.07	17.40	0.00	2.184	61.19	7.31	10.3	86.7	3.1	-4.14	0.71	0.65	1.05	3.9	0.004	0.99	0.0	0.04	18.91	0.01	2.136	17.97	2.10	2.0	98.0	0.0	-0.60	1.92	0.79	0.77	0.91	10590	1365	15	0	0	0	0	logfile
✔	3J6E	5895	2022-07-03	2014-02-18	4.7	4.79	—	4.7	0.021	2.60	18.0	0.13	13.25	0.01	1.539	6.14	0.28	3.4	96.2	0.4	-0.68	0.62	0.66	—	4.7	0.003	0.74	0.0	0.04	14.07	0.01	1.811	20.32	0.02	2.9	97.1	0.0	0.38	2.15	0.69	0.80	—	60984	7686	54	0	36	72	0	logfile
✔	3J6F	5896	2022-07-03	2014-02-19	4.9	4.97	—	4.9	0.021	2.64	64.0	0.14	14.01	0.01	2.069	6.10	0.14	3.1	96.3	0.6	-1.05	0.62	0.66	—	4.9	0.003	0.75	0.0	0.05	14.46	0.01	1.799	21.19	0.09	3.0	97.0	0.0	0.30	2.79	0.69	0.81	—	60903	7686	45	9	18	36	0	logfile
✔	3J6J	5925	2022-07-03	2014-03-13	3.64	4.17	—	3.9	0.007	1.41	0.0	0.06	15.90	0.00	1.578	33.23	6.10	4.1	95.0	0.9	-1.46	0.86	0.83	1.23	3.9	0.006	1.01	0.0	0.05	18.29	0.01	2.105	27.55	1.60	2.5	97.2	0.3	-0.37	2.60	0.89	0.89	1.75	6344	776	8	0	0	0	0	logfile
✔	3J6Q	5926	2022-07-07	2014-03-20	3.8	4.07	—	4.1	0.010	1.16	0.0	0.06	11.65	0.01	1.279	19.58	0.64	11.7	84.1	4.2	-4.60	0.46	0.59	1.31	4.0	0.008	1.04	0.0	0.05	15.17	0.01	1.723	11.78	0.15	10.3	89.0	0.7	-2.91	2.89	0.55	0.74	1.69	42575	5300	10	0	0	0	0	logfile
✔	3J79	2660	2022-07-05	2014-06-02	3.2	3.25	3.13	3.2	0.007	1.31	43.0	0.10	19.59	0.01	1.505	4.44	11.66	7.2	90.4	2.4	-1.45	0.53	0.71	0.94	3.2	0.005	0.71	0.0	0.04	18.05	0.01	1.833	14.01	0.84	6.0	93.5	0.5	-0.49	0.96	0.65	0.85	1.86	124514	6244	55	3460	168	0	0	logfile
✔	3J7A	2660	2022-07-04	2014-06-03	3.2	3.24	3.33	3.2	0.008	1.39	49.0	0.10	19.81	0.01	1.715	4.58	15.41	10.5	85.4	4.2	-2.49	0.31	0.55	-0.02	3.2	0.004	0.74	0.0	0.04	18.16	0.01	1.853	17.51	0.94	8.9	89.8	1.2	-1.90	2.71	0.39	0.76	1.01	68866	4106	35	1682	69	0	0	logfile

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