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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 1oED | 1044 | 2022-07-03 | 2003-03-24 | 4.0 | 3.94 | — | 10.4 | 0.014 | 2.29 | 3.0 | 0.10 | 17.23 | 0.01 | 1.183 | 225.04 | 19.76 | 5.2 | 92.7 | 2.1 | -3.67 | 0.39 | 0.18 | — | 9.0 | 0.004 | 1.03 | 0.0 | 0.05 | 15.86 | 0.01 | 2.151 | 21.91 | 0.52 | 2.1 | 97.9 | 0.0 | 1.73 | 2.85 | 0.63 | 0.45 | — | 4926 | 636 | 5 | 0 | 0 | 0 | 0 | logfile |
✘ | 2XEA | 1730 | 2022-07-03 | 2010-05-12 | 4.6 | 4.10 | — | 4.2 | 0.012 | 2.12 | 0.0 | 0.12 | 20.46 | 0.02 | 1.226 | 162.14 | 3.68 | 8.6 | 90.1 | 1.3 | -3.51 | 0.39 | 0.42 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 62671 | 7546 | 98 | 147 | 0 | 0 | 0 | logfile |
✘ | 3A5X | 1641 | 2022-07-03 | 2009-08-13 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | -4.41 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 3616 | 494 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 3iZK | 5247 | 2022-07-03 | 2010-10-29 | 4.9 | 4.48 | — | 7.1 | 0.014 | 1.48 | 16.0 | 0.08 | 12.45 | 0.02 | 2.461 | 2.79 | 0.77 | 2.0 | 97.5 | 0.4 | -1.62 | 0.65 | 0.48 | — | 6.0 | 0.003 | 0.75 | 0.0 | 0.04 | 13.21 | 0.00 | 2.241 | 26.30 | 0.00 | 3.5 | 96.5 | 0.0 | -0.57 | 1.99 | 0.82 | 0.75 | — | 58448 | 7856 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J03 | 5138 | 2022-07-03 | 2011-02-10 | 4.8 | 4.09 | — | 6.5 | 0.014 | 1.51 | 16.0 | 0.08 | 13.07 | 0.02 | 2.471 | 3.45 | 1.78 | 3.5 | 96.3 | 0.2 | -1.89 | 0.66 | 0.44 | — | 4.9 | 0.003 | 0.80 | 0.0 | 0.04 | 14.10 | 0.00 | 2.218 | 20.15 | 0.00 | 2.9 | 96.9 | 0.2 | -0.34 | 1.45 | 0.83 | 0.69 | — | 58640 | 7856 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J06 | 5185 | 2022-07-03 | 2011-04-26 | 3.3 | 2.88 | — | 3.5 | 0.011 | 2.34 | 441.0 | 0.15 | 21.08 | 0.01 | 1.607 | 79.64 | 14.71 | 21.1 | 65.4 | 13.5 | -7.24 | 0.56 | 0.80 | 1.90 | 3.0 | 0.005 | 0.92 | 0.0 | 0.04 | 20.49 | 0.01 | 2.171 | 17.58 | 1.07 | 8.0 | 90.2 | 1.8 | -2.96 | 1.27 | 0.55 | 0.79 | 2.24 | 62916 | 7595 | 98 | 147 | 0 | 0 | 0 | logfile |
✔ | 3J0G | 5275 | 2022-07-03 | 2011-07-21 | 4.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 108000 | 14160 | 240 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J0G | 5276 | 2022-07-03 | 2011-07-21 | 4.8 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 108000 | 14160 | 240 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J1B | 5391 | 2022-07-03 | 2012-02-06 | 4.9 | 5.01 | — | 4.8 | 0.034 | 3.60 | 502.0 | 0.21 | 17.58 | 0.03 | 2.352 | 1.76 | 4.08 | 6.4 | 90.1 | 3.5 | -3.28 | 0.67 | 0.51 | — | 4.8 | 0.003 | 0.80 | 0.0 | 0.05 | 14.96 | 0.01 | 2.173 | 13.93 | 0.00 | 5.4 | 93.8 | 0.8 | 0.69 | 2.24 | 0.78 | 0.69 | — | 62992 | 8304 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J2P | 5499 | 2022-07-03 | 2012-11-30 | 3.6 | 3.28 | — | 3.4 | 0.009 | 1.92 | 0.0 | 0.12 | 17.49 | 0.02 | 2.155 | 110.70 | 20.13 | 29.7 | 46.3 | 24.1 | -7.75 | 0.42 | 0.79 | 1.08 | 3.3 | 0.004 | 0.95 | 0.0 | 0.05 | 17.92 | 0.01 | 1.899 | 74.82 | 1.47 | 22.8 | 73.8 | 3.4 | -4.64 | 0.91 | 0.39 | 0.73 | 1.07 | 9890 | 1134 | 6 | 0 | 6 | 0 | 1086 | logfile |
✔ | 3J5P | 5778 | 2022-07-04 | 2013-10-28 | 3.275 | 3.63 | 3.36 | 3.4 | 0.011 | 1.53 | 0.0 | 0.09 | 21.59 | 0.01 | 1.156 | 79.28 | 27.79 | 5.7 | 94.3 | 0.0 | -0.42 | 0.62 | 0.55 | 0.56 | 3.5 | 0.003 | 0.88 | 0.0 | 0.04 | 17.12 | 0.00 | 2.147 | 17.88 | 0.35 | 5.2 | 94.8 | 0.0 | 0.56 | 2.07 | 0.73 | 0.79 | 0.76 | 18636 | 2324 | 4 | 0 | 44 | 0 | 0 | logfile |
✘ | 3J5Q | 5776 | 2022-07-04 | 2013-10-28 | 3.8 | 4.64 | — | 7.1 | 0.010 | 1.45 | 0.0 | 0.09 | 20.92 | 0.01 | 0.275 | 105.06 | 29.72 | 6.4 | 93.1 | 0.5 | -0.53 | 0.58 | 0.44 | -0.01 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 18264 | 2324 | 8 | 0 | 168 | 0 | 0 | logfile |
✘ | 3J5R | 5777 | 2022-07-04 | 2013-10-28 | 4.2 | 4.88 | — | 7.2 | 0.011 | 1.57 | 0.0 | 0.09 | 20.25 | 0.01 | 1.204 | 84.60 | 28.64 | 7.8 | 91.0 | 1.2 | -0.91 | 0.58 | 0.45 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 17564 | 2324 | 4 | 0 | 44 | 0 | 0 | logfile |
✔ | 3J63 | 5830 | 2022-07-03 | 2013-12-05 | 3.8 | 3.96 | — | 3.9 | 0.005 | 1.25 | 0.0 | 0.07 | 17.40 | 0.00 | 2.184 | 61.19 | 7.31 | 10.3 | 86.7 | 3.1 | -4.14 | 0.71 | 0.65 | 1.05 | 3.9 | 0.004 | 0.99 | 0.0 | 0.04 | 18.91 | 0.01 | 2.136 | 17.97 | 2.10 | 2.0 | 98.0 | 0.0 | -0.60 | 1.92 | 0.79 | 0.77 | 0.91 | 10590 | 1365 | 15 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J6E | 5895 | 2022-07-03 | 2014-02-18 | 4.7 | 4.79 | — | 4.7 | 0.021 | 2.60 | 18.0 | 0.13 | 13.25 | 0.01 | 1.539 | 6.14 | 0.28 | 3.4 | 96.2 | 0.4 | -0.68 | 0.62 | 0.66 | — | 4.7 | 0.003 | 0.74 | 0.0 | 0.04 | 14.07 | 0.01 | 1.811 | 20.32 | 0.02 | 2.9 | 97.1 | 0.0 | 0.38 | 2.15 | 0.69 | 0.80 | — | 60984 | 7686 | 54 | 0 | 36 | 72 | 0 | logfile |
✔ | 3J6F | 5896 | 2022-07-03 | 2014-02-19 | 4.9 | 4.97 | — | 4.9 | 0.021 | 2.64 | 64.0 | 0.14 | 14.01 | 0.01 | 2.069 | 6.10 | 0.14 | 3.1 | 96.3 | 0.6 | -1.05 | 0.62 | 0.66 | — | 4.9 | 0.003 | 0.75 | 0.0 | 0.05 | 14.46 | 0.01 | 1.799 | 21.19 | 0.09 | 3.0 | 97.0 | 0.0 | 0.30 | 2.79 | 0.69 | 0.81 | — | 60903 | 7686 | 45 | 9 | 18 | 36 | 0 | logfile |
✔ | 3J6J | 5925 | 2022-07-03 | 2014-03-13 | 3.64 | 4.17 | — | 3.9 | 0.007 | 1.41 | 0.0 | 0.06 | 15.90 | 0.00 | 1.578 | 33.23 | 6.10 | 4.1 | 95.0 | 0.9 | -1.46 | 0.86 | 0.83 | 1.23 | 3.9 | 0.006 | 1.01 | 0.0 | 0.05 | 18.29 | 0.01 | 2.105 | 27.55 | 1.60 | 2.5 | 97.2 | 0.3 | -0.37 | 2.60 | 0.89 | 0.89 | 1.75 | 6344 | 776 | 8 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J6Q | 5926 | 2022-07-07 | 2014-03-20 | 3.8 | 4.07 | — | 4.1 | 0.010 | 1.16 | 0.0 | 0.06 | 11.65 | 0.01 | 1.279 | 19.58 | 0.64 | 11.7 | 84.1 | 4.2 | -4.60 | 0.46 | 0.59 | 1.31 | 4.0 | 0.008 | 1.04 | 0.0 | 0.05 | 15.17 | 0.01 | 1.723 | 11.78 | 0.15 | 10.3 | 89.0 | 0.7 | -2.91 | 2.89 | 0.55 | 0.74 | 1.69 | 42575 | 5300 | 10 | 0 | 0 | 0 | 0 | logfile |
✔ | 3J79 | 2660 | 2022-07-05 | 2014-06-02 | 3.2 | 3.25 | 3.13 | 3.2 | 0.007 | 1.31 | 43.0 | 0.10 | 19.59 | 0.01 | 1.505 | 4.44 | 11.66 | 7.2 | 90.4 | 2.4 | -1.45 | 0.53 | 0.71 | 0.94 | 3.2 | 0.005 | 0.71 | 0.0 | 0.04 | 18.05 | 0.01 | 1.833 | 14.01 | 0.84 | 6.0 | 93.5 | 0.5 | -0.49 | 0.96 | 0.65 | 0.85 | 1.86 | 124514 | 6244 | 55 | 3460 | 168 | 0 | 0 | logfile |
✔ | 3J7A | 2660 | 2022-07-04 | 2014-06-03 | 3.2 | 3.24 | 3.33 | 3.2 | 0.008 | 1.39 | 49.0 | 0.10 | 19.81 | 0.01 | 1.715 | 4.58 | 15.41 | 10.5 | 85.4 | 4.2 | -2.49 | 0.31 | 0.55 | -0.02 | 3.2 | 0.004 | 0.74 | 0.0 | 0.04 | 18.16 | 0.01 | 1.853 | 17.51 | 0.94 | 8.9 | 89.8 | 1.2 | -1.90 | 2.71 | 0.39 | 0.76 | 1.01 | 68866 | 4106 | 35 | 1682 | 69 | 0 | 0 | logfile |