Table showing results for February 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	1oED	1044	2023-02-17	2003-03-24	4.0	3.94	—	10.4	0.014	2.29	3.0	0.10	17.23	0.01	1.183	224.94	19.76	5.2	92.7	2.1	-3.67	0.39	0.18	—	9.0	0.004	1.06	0.0	0.05	15.88	0.01	2.224	22.69	0.69	2.3	97.7	0.0	1.70	2.92	0.63	0.45	—	4926	636	5	0	0	0	0	logfile
✘	2XEA	1730	2023-02-23	2010-05-12	4.6	4.10	—	4.2	0.012	2.12	0.0	0.12	20.46	0.02	1.226	2.63	3.68	8.6	90.1	1.3	-3.51	0.39	0.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62671	7546	98	147	0	0	0	logfile
✘	3A5X	1641	2023-02-17	2009-08-13	4.0	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-4.41	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3616	494	1	0	0	0	0	logfile
✔	3iZK	5247	2023-02-22	2010-10-29	4.9	4.48	—	7.1	0.014	1.48	16.0	0.08	12.45	0.02	2.461	2.38	0.77	2.0	97.5	0.4	-1.62	0.65	0.48	—	6.9	0.003	0.77	0.0	0.04	13.34	0.00	2.202	23.64	0.00	3.9	96.1	0.0	-0.16	1.96	0.82	0.75	—	58448	7856	16	0	0	0	0	logfile
✔	3J03	5138	2023-02-22	2011-02-10	4.8	4.09	—	6.5	0.014	1.51	16.0	0.08	13.07	0.02	2.471	3.31	1.78	3.5	96.3	0.2	-1.89	0.66	0.44	—	4.9	0.003	0.77	0.0	0.04	14.39	0.00	2.218	22.78	0.00	3.0	96.8	0.2	-0.20	1.50	0.83	0.71	—	58640	7856	16	0	0	0	0	logfile
✔	3J06	5185	2023-02-23	2011-04-26	3.3	2.88	—	3.5	0.011	2.34	441.0	0.15	21.08	0.01	1.607	79.64	14.71	21.1	65.4	13.5	-7.24	0.56	0.80	1.90	3.2	0.003	0.88	0.0	0.04	20.32	0.01	2.209	17.76	0.98	6.9	91.2	1.8	-3.04	1.28	0.55	0.78	2.20	62916	7595	98	147	0	0	0	logfile
✔	3J1B	5391	2023-02-24	2012-02-06	4.9	5.01	—	4.8	0.034	3.60	502.0	0.21	17.58	0.03	2.352	1.73	4.08	6.4	90.1	3.5	-3.28	0.67	0.51	—	4.8	0.003	0.79	0.0	0.05	14.59	0.01	2.170	16.48	0.00	4.4	95.0	0.6	0.64	2.25	0.79	0.70	—	62992	8304	16	0	0	0	0	logfile
✔	3J2P	5499	2023-02-19	2012-11-30	3.6	3.28	—	3.4	0.009	1.92	0.0	0.12	17.49	0.02	2.155	110.20	20.13	29.7	46.3	24.1	-7.75	0.42	0.79	1.08	3.3	0.003	0.89	0.0	0.04	17.90	0.00	1.839	69.59	1.15	18.3	78.2	3.6	-4.35	0.93	0.38	0.72	1.24	9890	1134	8	0	6	0	1086	logfile
✔	3J5P	5778	2023-02-22	2013-10-28	3.275	3.63	3.36	3.4	0.011	1.53	0.0	0.09	21.59	0.01	1.156	79.06	27.79	5.7	94.3	0.0	-0.42	0.62	0.55	0.56	3.3	0.003	0.87	0.0	0.04	17.05	0.00	2.126	17.13	0.41	5.1	94.8	0.1	0.54	2.08	0.73	0.79	0.31	18636	2324	4	0	44	0	0	logfile
✘	3J5Q	5776	2023-02-22	2013-10-28	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18556	2448	8	0	44	0	292	logfile
✔	3J5R	5777	2023-02-22	2013-10-28	4.2	4.88	—	7.2	0.011	1.57	0.0	0.09	20.25	0.01	1.204	84.36	28.64	7.8	91.0	1.2	-0.91	0.58	0.45	—	7.3	0.004	0.91	0.0	0.04	13.17	0.00	2.141	20.76	0.00	6.8	92.9	0.4	0.29	1.77	0.67	0.53	—	17564	2324	4	0	44	0	0	logfile
✔	3J63	5830	2023-02-19	2013-12-05	3.8	3.96	—	3.9	0.005	1.25	0.0	0.07	17.40	0.00	2.184	54.83	7.31	10.3	86.7	3.1	-4.14	0.71	0.65	1.05	3.9	0.004	0.99	0.0	0.04	18.43	0.00	2.177	15.92	1.00	1.6	98.4	0.0	-0.41	1.91	0.79	0.76	1.22	10590	1365	15	0	0	0	0	logfile
✔	3J6E	5895	2023-02-23	2014-02-18	4.7	4.79	—	4.7	0.021	2.60	18.0	0.13	13.25	0.01	1.539	5.62	0.28	3.4	96.2	0.4	-0.68	0.62	0.66	—	4.7	0.003	0.72	0.0	0.04	14.09	0.00	1.877	18.82	0.02	2.6	97.4	0.0	0.35	2.15	0.69	0.79	—	60984	7686	54	0	36	72	0	logfile
✔	3J6F	5896	2023-02-23	2014-02-19	4.9	4.97	—	4.9	0.021	2.64	64.0	0.14	14.01	0.01	2.069	5.57	0.14	3.1	96.3	0.6	-1.05	0.62	0.66	—	4.9	0.003	0.75	0.0	0.05	14.43	0.01	1.807	20.80	0.06	2.9	97.1	0.0	0.36	2.79	0.68	0.81	—	60903	7686	45	9	18	36	0	logfile
✔	3J6J	5925	2023-02-20	2014-03-13	3.64	4.17	—	3.9	0.007	1.41	0.0	0.06	15.90	0.00	1.578	33.23	6.10	4.1	95.0	0.9	-1.46	0.86	0.83	1.23	3.9	0.005	1.04	0.0	0.05	17.98	0.01	2.010	25.70	1.31	2.5	97.2	0.3	-0.15	2.62	0.89	0.88	1.91	6344	776	8	0	0	0	0	logfile
✔	3J7A	2660	2023-02-27	2014-06-03	3.2	3.24	3.33	3.2	0.008	1.39	49.0	0.10	19.81	0.01	1.715	4.55	15.41	10.5	85.4	4.2	-2.49	0.31	0.55	-0.02	3.2	0.003	0.70	0.0	0.04	18.04	0.01	1.866	17.03	1.05	8.0	90.8	1.2	-1.89	2.71	0.40	0.77	1.02	68866	4106	35	1682	69	0	0	logfile
✔	3J89	6123	2023-02-18	2014-10-07	3.6	2.21	—	3.5	0.022	1.64	0.0	0.10	11.97	0.01	2.578	2.11	0.00	3.5	96.5	0.0	-0.96	0.83	0.81	0.77	3.2	0.003	0.49	0.0	0.03	20.68	0.00	2.114	8.31	1.00	0.6	99.4	0.0	3.03	1.98	0.81	0.79	0.31	9025	551	19	0	0	0	4598	logfile
✔	3J8A	6124	2023-02-21	2014-10-08	3.7	3.90	—	3.8	0.006	1.27	0.0	0.05	14.88	0.01	2.145	19.64	6.28	11.2	87.4	1.4	-5.31	0.73	0.80	2.48	3.8	0.003	0.84	0.0	0.05	16.36	0.00	1.960	13.80	0.71	5.1	94.0	0.8	-2.15	0.52	0.72	0.82	1.56	15800	1835	12	0	280	0	0	logfile
✔	3J8i	6179	2023-02-21	2014-11-06	4.7	4.79	—	4.7	0.018	1.67	0.0	0.11	19.47	0.01	2.125	76.17	14.53	6.4	87.5	6.1	-1.59	0.66	0.76	—	4.7	0.003	0.92	0.0	0.04	14.37	0.00	2.050	17.08	0.00	11.4	88.1	0.5	-1.97	1.76	0.64	0.70	—	14800	1875	10	0	10	0	0	logfile
✔	3J94	6204	2023-02-23	2014-12-05	4.2	2.69	—	3.1	0.009	1.96	0.0	0.07	15.84	0.01	1.261	31.36	5.87	5.0	93.0	2.0	2.31	0.83	0.77	—	2.7	0.003	0.78	0.0	0.04	13.83	0.00	1.701	15.43	0.00	4.6	94.9	0.6	0.64	2.61	0.85	0.80	—	21509	2895	12	0	11	0	0	logfile

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