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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✘ | 5GUP | 9539 | 2023-12-08 | 2016-08-30 | 4.0 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 109982 | 13895 | 107 | 0 | 77 | 0 | 0 | logfile |
✘ | 5GW4 | 9540 | 2023-12-09 | 2016-09-08 | 4.7 | 4.89 | — | 4.8 | 0.001 | 0.42 | 0.0 | 0.04 | 7.26 | 0.00 | 2.187 | 6.49 | 0.00 | 4.3 | 95.6 | 0.1 | -3.58 | 0.77 | 0.66 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✘ | 5GW5 | 9541 | 2023-12-09 | 2016-09-08 | 4.6 | 4.75 | — | 4.7 | 0.002 | 0.58 | 0.0 | 0.04 | 7.37 | 0.00 | 2.136 | 6.87 | 0.01 | 4.5 | 95.4 | 0.1 | -3.73 | 0.74 | 0.64 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 64544 | 8446 | 16 | 0 | 0 | 0 | 0 | logfile |
✔ | 5H1B | 9566 | 2023-12-08 | 2016-10-08 | 4.4 | 3.94 | — | 3.6 | 0.010 | 1.41 | 0.0 | 0.06 | 16.13 | 0.01 | 1.503 | 54.25 | 5.67 | 6.2 | 91.1 | 2.6 | -1.51 | 0.59 | 0.70 | — | 3.6 | 0.004 | 0.73 | 0.0 | 0.04 | 14.05 | 0.00 | 1.882 | 16.80 | 0.00 | 4.8 | 94.3 | 0.9 | 0.18 | 2.97 | 0.65 | 0.82 | — | 7359 | 924 | 7 | 9 | 6 | 0 | 0 | logfile |
✔ | 5H1C | 9567 | 2023-12-08 | 2016-10-08 | 4.5 | 4.34 | — | 3.8 | 0.009 | 1.30 | 0.0 | 0.05 | 15.37 | 0.00 | 1.454 | 41.46 | 4.44 | 4.9 | 92.8 | 2.3 | -2.37 | 0.52 | 0.66 | — | 3.8 | 0.003 | 0.63 | 0.0 | 0.04 | 15.21 | 0.00 | 2.009 | 12.78 | 0.00 | 4.8 | 94.2 | 1.0 | 0.65 | 1.57 | 0.58 | 0.82 | — | 7602 | 933 | 8 | 18 | 6 | 0 | 0 | logfile |
✔ | 5iRX | 8117 | 2023-12-10 | 2016-03-14 | 2.95 | 3.39 | 2.91 | 3.3 | 0.014 | 1.44 | 0.0 | 0.07 | 19.90 | 0.01 | 1.744 | 9.65 | 0.00 | 10.7 | 89.2 | 0.1 | -6.45 | 0.67 | 0.77 | 3.80 | 3.4 | 0.003 | 0.67 | 0.0 | 0.04 | 16.32 | 0.00 | 2.259 | 7.41 | 1.06 | 7.4 | 92.6 | 0.0 | -0.39 | 0.71 | 0.62 | 0.81 | 2.15 | 13162 | 1726 | 12 | 0 | 20 | 0 | 0 | logfile |
✔ | 5iRZ | 8118 | 2023-12-10 | 2016-03-15 | 3.28 | 3.63 | 3.24 | 3.5 | 0.010 | 1.31 | 0.0 | 0.23 | 23.00 | 0.00 | 2.008 | 9.02 | 0.00 | 7.5 | 92.5 | 0.0 | -5.78 | 0.68 | 0.77 | 4.48 | 3.5 | 0.003 | 0.62 | 0.0 | 0.04 | 16.87 | 0.00 | 2.195 | 8.16 | 0.46 | 6.5 | 93.5 | 0.0 | 0.70 | 0.70 | 0.65 | 0.84 | 2.87 | 12504 | 1576 | 8 | 0 | 24 | 0 | 0 | logfile |
✔ | 5iS0 | 8119 | 2023-12-09 | 2016-03-15 | 3.43 | 3.36 | 3.37 | 3.2 | 0.015 | 1.24 | 0.0 | 0.06 | 12.94 | 0.01 | 1.283 | 5.42 | 0.00 | 10.1 | 89.7 | 0.3 | -5.27 | 0.63 | 0.73 | 2.61 | 3.2 | 0.003 | 0.77 | 0.0 | 0.04 | 16.01 | 0.00 | 2.170 | 11.50 | 0.47 | 5.5 | 94.5 | 0.0 | -0.23 | 1.48 | 0.63 | 0.81 | 2.41 | 11808 | 1576 | 8 | 0 | 4 | 0 | 0 | logfile |
✔ | 5JLF | 8162 | 2023-12-10 | 2016-04-27 | 3.6 | 3.99 | — | 3.7 | 0.013 | 1.58 | 17.0 | 0.11 | 12.26 | 0.01 | 2.184 | 9.01 | 1.29 | 2.9 | 96.6 | 0.6 | -0.70 | 0.67 | 0.69 | 2.49 | 3.7 | 0.004 | 0.77 | 0.0 | 0.04 | 14.98 | 0.00 | 1.921 | 15.48 | 0.39 | 3.8 | 96.0 | 0.3 | -0.38 | 1.42 | 0.70 | 0.75 | 2.02 | 15800 | 1835 | 12 | 0 | 280 | 0 | 0 | logfile |
✔ | 5JLF | 8163 | 2023-12-10 | 2016-04-27 | 3.6 | 3.82 | — | 3.7 | 0.013 | 1.58 | 17.0 | 0.11 | 12.26 | 0.01 | 2.184 | 9.01 | 1.29 | 2.9 | 96.6 | 0.6 | -0.70 | 0.64 | 0.74 | 2.52 | 3.7 | 0.004 | 0.74 | 0.0 | 0.04 | 15.08 | 0.00 | 1.930 | 13.10 | 0.45 | 3.6 | 96.1 | 0.3 | 0.05 | 1.43 | 0.68 | 0.84 | 1.89 | 15800 | 1835 | 12 | 0 | 280 | 0 | 0 | logfile |
✔ | 5K0Z | 8191 | 2023-12-09 | 2016-05-17 | 2.8 | 4.15 | — | 2.8 | 0.011 | 1.04 | 0.0 | 0.06 | 10.64 | 0.01 | 2.056 | 18.30 | 0.00 | 2.9 | 97.1 | 0.0 | -4.11 | 0.73 | 0.58 | 1.27 | 3.1 | 0.005 | 1.15 | 0.0 | 0.06 | 17.03 | 0.01 | 2.099 | 33.56 | 4.91 | 4.5 | 95.5 | 0.0 | -0.35 | 1.52 | 0.87 | 0.84 | 1.07 | 9749 | 1268 | 8 | 0 | 0 | 41 | 0 | logfile |
✔ | 5K10 | 8192 | 2023-12-09 | 2016-05-17 | 3.8 | 4.74 | — | 3.8 | 0.009 | 0.93 | 0.0 | 0.06 | 12.22 | 0.02 | 2.138 | 33.42 | 0.30 | 6.9 | 92.6 | 0.5 | -4.07 | 0.80 | 0.57 | 0.98 | 3.8 | 0.004 | 0.84 | 0.0 | 0.04 | 16.04 | 0.00 | 2.197 | 24.77 | 0.15 | 3.7 | 96.0 | 0.3 | -0.14 | 1.89 | 0.92 | 0.86 | 1.02 | 6338 | 794 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 5K11 | 8193 | 2023-12-09 | 2016-05-17 | 3.8 | 4.50 | — | 3.8 | 0.012 | 1.23 | 0.0 | 0.06 | 12.12 | 0.01 | 2.061 | 29.53 | 0.30 | 6.1 | 93.4 | 0.5 | -4.89 | 0.80 | 0.59 | 1.53 | 3.8 | 0.004 | 0.88 | 0.0 | 0.05 | 15.49 | 0.00 | 2.139 | 21.59 | 0.15 | 4.5 | 95.5 | 0.0 | -0.28 | 1.64 | 0.90 | 0.84 | 1.22 | 6338 | 794 | 4 | 0 | 2 | 0 | 0 | logfile |
✔ | 5KGF | 8246 | 2023-12-10 | 2016-06-13 | 4.54 | 4.64 | — | 4.5 | 0.009 | 1.37 | 2.0 | 0.07 | 27.92 | 0.01 | 1.243 | 27.10 | 0.12 | 6.5 | 93.1 | 0.4 | -4.86 | 0.79 | 0.76 | — | 4.5 | 0.006 | 0.76 | 0.0 | 0.04 | 26.20 | 0.01 | 2.125 | 21.30 | 0.12 | 6.3 | 93.4 | 0.3 | -0.74 | 1.81 | 0.83 | 0.85 | — | 13782 | 986 | 14 | 290 | 0 | 0 | 0 | logfile |
✔ | 5KMG | 8266 | 2023-12-08 | 2016-06-27 | 3.5 | 4.13 | — | 4.0 | 0.019 | 1.34 | 0.0 | 0.10 | 13.69 | 0.02 | 1.894 | 3.71 | 0.00 | 5.8 | 92.0 | 2.2 | -1.01 | 0.49 | 0.75 | 2.38 | 4.0 | 0.003 | 0.72 | 0.0 | 0.04 | 17.25 | 0.00 | 1.965 | 12.24 | 0.33 | 3.3 | 96.6 | 0.0 | 1.32 | 1.03 | 0.46 | 0.79 | 2.18 | 111594 | 13860 | 70 | 14 | 42 | 0 | 0 | logfile |
✔ | 5L08 | 8300 | 2023-12-10 | 2016-07-26 | 4.6 | 3.95 | — | 4.3 | 0.011 | 1.03 | 0.0 | 0.05 | 11.66 | 0.00 | 2.041 | 6.99 | 0.00 | 3.0 | 96.8 | 0.2 | -0.41 | 0.34 | 0.71 | — | 4.4 | 0.006 | 1.28 | 0.0 | 0.06 | 15.37 | 0.01 | 1.912 | 43.78 | 0.00 | 8.2 | 91.8 | 0.0 | -2.70 | 3.88 | 0.27 | 0.71 | — | 13617 | 1629 | 9 | 0 | 0 | 0 | 0 | logfile |
✔ | 5Lii | 4053 | 2023-12-07 | 2016-07-14 | 3.8 | 2.99 | — | 3.9 | 0.015 | 2.41 | 6.0 | 0.14 | 12.69 | 0.01 | 1.855 | 42.83 | 1.41 | 16.9 | 81.9 | 1.2 | -6.10 | 0.55 | 0.70 | 3.46 | 3.8 | 0.003 | 0.88 | 0.0 | 0.04 | 15.96 | 0.01 | 2.201 | 13.15 | 1.41 | 14.6 | 84.7 | 0.7 | -4.22 | 0.87 | 0.56 | 0.67 | 1.49 | 3098 | 433 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LiJ | 4054 | 2023-12-07 | 2016-07-14 | 4.2 | 3.63 | — | 4.2 | 0.009 | 2.92 | 4.0 | 0.17 | 15.82 | 0.01 | 2.249 | 25.64 | 0.00 | 10.7 | 89.3 | 0.0 | -6.36 | 0.85 | 0.76 | — | 3.8 | 0.005 | 1.18 | 0.0 | 0.04 | 10.31 | 0.00 | 2.148 | 15.12 | 0.00 | 32.0 | 68.0 | 0.0 | -5.66 | 1.48 | 0.86 | 0.78 | — | 761 | 152 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 5LJ3 | 4055 | 2023-12-09 | 2016-07-17 | 3.8 | 3.92 | — | 3.8 | 0.007 | 1.46 | 40.0 | 0.09 | 19.06 | 0.01 | 1.631 | 5.99 | 8.54 | 8.1 | 90.7 | 1.2 | -1.69 | 0.70 | 0.81 | 1.37 | 3.8 | 0.003 | 0.73 | 0.0 | 0.04 | 18.72 | 0.00 | 2.035 | 15.06 | 0.38 | 4.6 | 95.2 | 0.2 | 0.36 | 0.86 | 0.69 | 0.78 | 1.40 | 63161 | 7305 | 45 | 458 | 142 | 0 | 0 | logfile |
✘ | 5LJV | 4062 | 2023-12-10 | 2016-07-21 | 3.64 | 3.75 | — | 3.7 | 0.030 | 2.85 | 85.0 | 0.16 | 18.81 | 0.02 | 2.070 | 21.28 | 11.82 | 7.4 | 89.7 | 2.9 | -4.53 | 0.71 | 0.84 | 2.85 | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | — | 15000 | 1950 | 12 | 0 | 12 | 0 | 0 | logfile |