Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3JBT	6480	2023-08-16	2015-10-15	3.8	3.89	—	3.8	0.008	1.31	7.0	0.07	19.56	0.01	1.919	70.66	18.24	8.0	88.3	3.6	-0.65	0.57	0.50	0.49	3.8	0.003	0.78	0.0	0.04	16.97	0.00	1.830	16.15	0.59	7.8	91.5	0.7	-1.46	1.75	0.70	0.68	0.58	70252	8736	28	0	21	0	0	logfile
✔	3JBW	6489	2023-08-24	2015-10-21	4.6	4.71	—	4.6	0.013	1.70	1.0	0.08	21.70	0.01	1.977	22.69	4.88	5.6	93.6	0.9	-3.37	0.75	0.79	—	4.6	0.005	0.81	0.0	0.04	21.61	0.01	2.070	24.94	0.00	6.5	93.3	0.2	-1.14	1.71	0.76	0.80	—	19997	1946	12	222	2	0	0	logfile
✔	3JBX	6487	2023-08-22	2015-10-22	3.4	3.51	—	3.6	0.006	1.24	1.0	0.05	21.13	0.01	1.816	16.75	11.74	6.1	93.8	0.1	-3.11	0.75	0.80	2.08	3.5	0.003	0.74	0.0	0.04	21.28	0.01	2.040	16.68	0.95	4.6	95.3	0.1	-0.50	0.79	0.74	0.82	1.88	16670	1802	14	116	6	0	0	logfile
✔	3JBY	6488	2023-08-22	2015-10-22	3.7	3.78	—	3.8	0.015	1.57	0.0	0.07	20.72	0.01	2.015	24.71	5.74	4.2	95.5	0.3	-3.60	0.77	0.83	2.24	3.7	0.003	0.72	0.0	0.04	21.19	0.00	2.170	15.22	0.38	4.4	95.3	0.3	-0.20	0.86	0.75	0.82	1.61	16846	1802	12	124	6	0	0	logfile
✔	3JC1	6461	2023-08-22	2015-11-09	4.0	4.30	—	4.3	0.009	1.19	0.0	0.05	10.37	0.00	2.291	8.81	0.00	3.8	96.2	0.0	-3.91	0.31	0.59	—	4.3	0.003	0.64	0.0	0.04	16.25	0.00	2.206	9.33	0.39	1.8	98.2	0.0	3.67	1.25	0.44	0.75	—	92106	11628	68	0	0	0	0	logfile
✔	3JC2	3245	2023-08-09	2015-11-15	3.6	3.58	3.97	3.7	0.012	1.63	2.0	0.08	14.90	0.01	1.175	18.51	7.32	11.5	84.5	4.0	-4.52	0.22	0.59	1.48	3.6	0.004	0.86	0.0	0.04	17.18	0.00	2.128	14.33	0.49	7.4	91.9	0.6	-1.41	3.32	0.24	0.53	1.66	3911	482	4	0	32	0	0	logfile
✘	3JC5	6535	2023-08-25	2015-11-24	4.7	5.02	—	4.8	0.009	1.54	5.0	0.06	12.17	0.01	0.300	46.29	0.63	9.4	88.9	1.7	-4.21	0.76	0.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	40041	5039	11	0	0	0	0	logfile
✘	3JC6	6534	2023-08-17	2015-11-24	3.7	4.01	—	3.9	0.009	1.54	0.0	0.06	12.91	0.01	1.203	39.73	0.87	9.8	89.0	1.1	-3.87	0.79	0.76	1.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23732	2953	12	0	1	0	0	logfile
✘	3JC7	6536	2023-08-25	2015-11-24	4.8	5.23	—	4.8	0.009	1.57	7.0	0.07	12.16	0.01	0.163	42.92	0.45	8.5	90.1	1.3	-4.10	0.75	0.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	40298	5075	12	0	1	0	0	logfile
✔	3JCA	6441	2023-08-12	2015-11-24	4.8	4.59	—	4.5	0.012	1.49	0.0	0.07	18.62	0.01	2.370	2.63	0.00	7.2	92.8	0.0	-1.87	0.75	0.75	—	4.5	0.003	0.67	0.0	0.04	19.55	0.01	2.058	15.25	0.10	5.1	94.9	0.0	-0.38	2.47	0.76	0.77	—	11466	1226	16	80	4	0	0	logfile
✔	3JCD	6549	2023-08-31	2015-12-01	3.7	5.07	—	19.0	0.006	0.83	0.0	0.04	14.69	0.00	1.289	14.63	0.02	9.6	85.8	4.5	-2.43	0.34	0.04	0.30	3.4	0.005	1.16	0.0	0.06	20.49	0.01	1.400	48.65	0.88	15.2	83.4	1.3	-4.28	2.51	0.71	0.42	0.16	147815	5982	57	4715	0	0	0	logfile
✔	3JCF	6551	2023-08-13	2015-12-11	3.8	4.02	—	3.9	0.004	1.03	0.0	0.04	6.81	0.00	2.057	8.41	0.00	4.6	95.4	0.0	-1.63	0.74	0.81	2.11	3.9	0.003	0.67	0.0	0.04	12.60	0.00	1.983	12.49	0.06	3.4	96.6	0.0	1.84	0.69	0.75	0.85	1.65	14228	1745	10	0	13	0	0	logfile
✔	3JCi	6555	2023-08-23	2015-12-13	2.9	3.14	—	3.1	0.010	0.89	0.0	0.05	8.65	0.01	2.239	18.61	0.00	2.1	97.3	0.5	-2.08	0.75	0.85	5.77	3.1	0.003	0.65	0.0	0.04	15.86	0.00	2.235	7.01	1.62	2.7	97.3	0.0	-0.73	0.69	0.69	0.86	4.83	93420	11400	60	0	0	0	0	logfile
✘	3JCJ	6559	2023-08-31	2015-12-18	3.7	3.96	—	3.8	0.007	1.05	18.0	0.10	12.45	0.01	1.344	2.06	0.39	9.2	89.0	1.8	-3.55	0.80	0.75	1.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	148347	6249	82	4594	197	837	0	logfile
✔	3JCL	6526	2023-08-18	2015-12-21	4.0	4.03	—	4.0	0.018	1.83	9.0	0.09	9.75	0.01	2.379	2.74	0.00	5.2	94.3	0.6	-0.72	0.71	0.74	—	4.0	0.003	0.74	0.0	0.04	14.59	0.00	2.114	12.67	0.44	7.2	92.7	0.1	-0.57	1.77	0.70	0.70	—	24822	3201	3	0	0	0	0	logfile
✔	3JCN	3285	2023-08-30	2016-01-04	4.6	4.58	—	4.4	0.007	1.08	9.0	0.10	12.71	0.01	1.344	3.04	0.18	6.9	91.6	1.5	-3.44	0.75	0.65	—	4.4	0.005	0.77	0.0	0.04	15.59	0.01	1.963	30.05	0.06	11.2	88.3	0.5	-2.53	1.05	0.81	0.79	—	147292	6123	57	4638	1	0	0	logfile
✔	3JCo	6574	2023-08-26	2016-01-06	4.8	5.76	—	4.7	0.012	1.35	4.0	0.06	10.71	0.01	1.268	95.78	0.41	13.5	85.0	1.5	-5.20	0.87	0.76	—	4.7	0.005	0.87	0.0	0.05	12.33	0.01	1.964	38.94	0.01	8.9	90.8	0.4	-1.76	3.09	0.90	0.84	—	104317	13329	47	0	0	0	0	logfile
✔	3JCP	6575	2023-08-26	2016-01-06	4.6	4.81	—	4.5	0.011	1.30	3.0	0.06	10.56	0.01	1.114	72.15	0.76	11.7	86.7	1.7	-5.00	0.76	0.66	—	4.5	0.004	0.80	0.0	0.04	12.31	0.00	1.994	27.44	0.01	7.8	92.0	0.3	-0.98	0.96	0.85	0.81	—	104170	13367	47	0	0	0	0	logfile
✔	3JCS	6583	2023-08-12	2016-01-21	2.8	3.07	—	3.0	0.009	0.98	1.0	0.05	19.59	0.03	1.093	24.89	1.41	11.8	88.0	0.2	-5.35	0.72	0.78	3.98	3.0	0.007	0.87	0.0	0.04	19.74	0.01	1.858	17.70	3.25	10.3	89.7	0.1	-2.53	0.54	0.71	0.80	2.77	117257	5847	74	3420	109	144	0	logfile
✘	3JCU	6617	2023-08-18	2016-03-10	3.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	75994	7648	76	0	322	0	0	logfile

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