Table showing results for December 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5TTP	8467	2021-12-01	2016-11-04	4.8	4.88	—	4.5	0.006	1.36	0.0	0.06	11.70	0.01	2.038	24.92	0.00	14.1	85.2	0.7	-5.87	0.61	0.60	—	4.6	0.002	0.75	0.0	0.04	4.87	0.00	2.268	5.23	0.00	12.2	87.7	0.2	0.48	2.21	0.67	0.70	—	5616	1138	2	0	0	0	0	logfile
✔	5TV4	8469	2021-12-01	2016-11-08	4.2	4.13	—	4.0	0.007	1.26	0.0	0.06	12.31	0.01	1.511	46.46	0.48	13.1	86.2	0.7	-5.82	0.48	0.57	—	4.0	0.004	0.78	0.0	0.04	10.40	0.00	2.164	10.33	0.00	5.7	94.3	0.0	0.13	0.85	0.54	0.66	—	6548	1140	4	0	17	0	0	logfile
✔	5U1C	8481	2021-12-01	2016-11-28	3.9	4.05	4.05	4.0	0.008	0.91	0.0	0.05	19.97	0.01	1.964	4.76	0.28	6.3	93.7	0.0	-4.03	0.65	0.70	2.74	4.0	0.003	0.69	0.0	0.04	23.54	0.00	2.004	14.02	0.28	2.9	97.1	0.0	0.02	1.64	0.70	0.80	1.58	8596	846	12	94	4	0	0	logfile
✔	5U1D	8482	2021-12-01	2016-11-28	3.97	4.06	—	4.3	0.007	1.17	0.0	0.05	12.05	0.00	2.452	0.07	0.84	5.7	94.1	0.2	-2.16	0.36	0.48	1.30	4.3	0.004	0.78	0.0	0.04	15.92	0.00	1.985	14.73	0.51	4.8	95.1	0.1	0.73	1.31	0.53	0.75	1.33	7815	1168	3	0	0	0	0	logfile
✔	5UAK	8516	2021-12-01	2016-12-19	3.87	4.12	—	4.2	0.008	1.08	0.0	0.06	13.28	0.00	2.474	0.37	0.00	4.3	95.7	0.0	-3.02	0.42	0.62	1.39	4.1	0.003	0.76	0.0	0.04	16.47	0.00	2.110	11.93	0.40	3.3	96.7	0.0	0.66	1.58	0.53	0.76	1.21	9232	1139	2	0	19	0	0	logfile
✔	5UAR	8461	2021-12-01	2016-12-19	3.73	4.36	—	4.4	0.008	1.18	0.0	0.06	13.30	0.00	2.393	0.26	1.06	7.4	92.5	0.1	-3.58	0.58	0.77	1.39	4.3	0.003	0.73	0.0	0.04	16.17	0.00	2.132	10.94	0.48	4.4	95.6	0.0	-0.31	1.53	0.61	0.79	0.88	9489	1184	1	0	2	0	0	logfile
✔	5UJ9	8559	2021-12-01	2017-01-17	3.49	3.63	3.85	3.6	0.008	1.14	0.0	0.06	12.10	0.00	2.364	0.67	0.00	4.3	95.7	0.0	-2.72	0.50	0.68	2.42	3.6	0.003	0.70	0.0	0.04	15.60	0.00	2.148	10.23	0.69	3.1	96.9	0.0	1.52	0.98	0.59	0.83	1.57	9857	1170	1	0	125	0	0	logfile
✔	5UJA	8560	2021-12-01	2017-01-17	3.34	3.41	3.88	3.4	0.008	1.31	1.0	0.06	13.61	0.00	2.321	0.92	0.00	4.0	96.0	0.0	-3.39	0.49	0.66	2.49	3.3	0.003	0.73	0.0	0.04	16.47	0.00	2.159	12.70	0.49	4.4	95.6	0.0	-0.06	1.05	0.57	0.79	1.74	9900	1170	1	0	126	0	0	logfile
✔	5UZ7	8623	2021-12-01	2017-02-24	4.1	4.03	—	4.0	0.008	1.17	0.0	0.06	11.04	0.01	2.267	7.69	0.37	4.4	95.6	0.0	-2.30	0.64	0.75	—	4.0	0.004	0.75	0.0	0.04	13.73	0.00	2.088	14.58	0.00	5.0	95.0	0.0	-0.38	1.40	0.67	0.78	—	7643	974	5	0	0	0	0	logfile
✔	5V4S	8632	2021-12-02	2017-03-10	4.2	4.02	—	4.2	0.012	1.56	20.0	0.14	8.80	0.01	2.352	3.29	0.00	6.6	93.1	0.3	-1.95	0.58	0.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10756	1548	4	0	0	0	0	logfile
✔	5V4S	8633	2021-12-02	2017-03-10	4.2	7.95	—	4.2	0.012	1.56	20.0	0.14	8.80	0.01	2.352	3.29	0.00	6.6	93.1	0.3	-1.95	0.55	0.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10756	1548	4	0	0	0	0	logfile
✔	5V6P	8637	2021-12-01	2017-03-17	4.1	4.04	—	4.1	0.015	1.37	0.0	0.08	9.65	0.01	2.463	1.41	0.00	2.6	97.0	0.4	0.18	0.40	0.58	—	4.0	0.003	0.65	0.0	0.03	12.71	0.00	1.883	12.62	0.00	2.4	97.4	0.2	3.20	1.62	0.41	0.66	—	9194	540	2	0	0	0	4676	logfile
✔	5V7V	8642	2021-12-01	2017-03-20	3.9	3.88	—	3.8	0.011	1.19	1.0	0.06	12.64	0.01	1.713	18.52	0.00	11.2	88.7	0.2	-4.92	0.55	0.69	1.61	3.8	0.003	0.65	0.0	0.04	15.80	0.00	1.965	14.94	0.57	9.4	90.6	0.0	-1.01	1.02	0.61	0.78	0.54	9919	613	1	0	9	0	4811	logfile
✔	5VAi	8653	2021-12-01	2017-03-27	4.1	4.62	—	4.6	0.008	1.11	0.0	0.05	9.72	0.01	2.049	31.45	0.21	4.4	95.3	0.3	-1.52	0.71	0.70	—	4.6	0.004	0.83	0.0	0.05	13.03	0.01	2.149	20.07	0.00	4.7	95.2	0.2	-0.70	1.10	0.70	0.71	—	9099	1178	6	0	0	0	0	logfile
✔	5VRF	8728	2021-12-01	2017-05-10	4.1	4.21	—	4.1	0.011	1.28	0.0	0.06	10.38	0.01	1.994	8.62	0.00	2.5	97.5	0.0	-4.10	0.82	0.82	—	4.1	0.003	0.72	0.0	0.04	13.49	0.00	1.994	11.46	0.00	1.8	98.2	0.0	2.10	3.54	0.83	0.83	—	4378	564	4	0	8	0	0	logfile
✔	5W3H	8756	2021-12-01	2017-06-07	4.0	4.09	—	4.0	0.007	1.46	0.0	0.08	14.89	0.01	1.046	4.45	0.94	3.8	95.7	0.5	-0.90	0.59	0.85	—	4.0	0.005	0.85	0.0	0.04	17.04	0.00	1.932	15.20	0.67	4.3	95.4	0.3	0.25	1.81	0.59	0.83	—	6876	867	4	1	3	0	0	logfile
✔	5W3J	8757	2021-12-01	2017-06-07	4.0	4.33	—	4.1	0.002	0.54	0.0	0.04	8.15	0.00	2.262	6.50	0.00	8.7	90.2	1.2	-5.17	0.60	0.82	—	4.1	0.003	0.79	0.0	0.04	13.49	0.00	1.968	14.62	0.27	4.6	95.0	0.3	-0.63	1.75	0.61	0.85	—	6913	867	4	1	3	0	0	logfile
✘	5W7G	8780	2021-12-01	2017-06-19	4.5	4.20	—	4.2	0.015	1.17	0.0	0.07	15.16	0.01	2.165	7.01	0.45	1.2	98.8	0.0	-0.31	0.50	0.47	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	53508	5397	44	504	0	0	0	logfile
✔	5W81	8782	2021-12-01	2017-06-21	3.37	3.79	—	3.9	0.008	1.26	1.0	0.06	13.30	0.00	1.940	1.47	0.00	5.1	94.9	0.0	-3.11	0.45	0.60	0.57	3.8	0.013	1.30	1.0	0.04	17.03	0.01	1.754	12.79	0.20	2.8	97.0	0.2	0.06	1.58	0.57	0.82	1.35	9393	1173	1	0	4	0	0	logfile
✔	5WK5	8855	2021-12-01	2017-07-24	4.2	4.02	—	4.0	0.010	1.08	0.0	0.05	9.64	0.01	1.909	5.08	0.00	9.8	90.2	0.0	-2.83	0.34	0.73	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	161786	11029	41	0	0	0	80606	logfile

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