Table showing results for December 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	3JC5	6535	2022-12-20	2015-11-24	4.7	5.02	—	4.8	0.009	1.54	5.0	0.06	12.17	0.01	0.300	46.35	0.63	9.4	88.9	1.7	-4.21	0.76	0.60	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	40041	5039	11	0	0	0	0	logfile
✘	3JC6	6534	2022-12-18	2015-11-24	3.7	4.01	—	3.9	0.009	1.53	0.0	0.06	12.91	0.01	1.203	39.77	0.87	9.8	89.0	1.1	-3.87	0.79	0.76	1.43	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	23732	2953	12	0	1	0	0	logfile
✘	3JC7	6536	2022-12-20	2015-11-24	4.8	5.23	—	4.8	0.009	1.57	7.0	0.07	12.16	0.01	0.163	42.96	0.45	8.5	90.1	1.3	-4.10	0.75	0.53	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	40298	5075	12	0	1	0	0	logfile
✔	3JCA	6441	2022-12-12	2015-11-24	4.8	4.59	—	4.5	0.012	1.49	0.0	0.07	18.62	0.01	2.370	3.54	0.00	7.2	92.8	0.0	-1.87	0.75	0.75	—	4.5	0.003	0.68	0.0	0.04	19.69	0.01	2.009	16.11	0.19	5.4	94.6	0.0	-0.35	2.48	0.76	0.77	—	11466	1226	16	80	4	0	0	logfile
✔	3JCF	6551	2022-12-13	2015-12-11	3.8	4.02	—	3.9	0.004	1.03	0.0	0.04	6.81	0.00	2.057	8.41	0.00	4.6	95.4	0.0	-1.63	0.74	0.81	2.11	3.9	0.003	0.66	0.0	0.04	12.69	0.00	1.975	12.25	0.13	3.6	96.4	0.0	1.83	0.69	0.74	0.85	1.74	14228	1745	10	0	13	0	0	logfile
✔	3JCi	6555	2022-12-17	2015-12-13	2.9	3.14	—	3.1	0.010	0.89	0.0	0.05	8.65	0.01	0.060	32.23	0.00	2.1	97.3	0.5	-2.08	0.74	0.84	5.65	3.1	0.013	0.91	17.0	0.05	16.16	0.01	1.687	17.43	2.47	3.8	96.1	0.1	-1.14	0.85	0.67	0.85	4.75	94977	11590	61	0	0	0	0	logfile
✔	3JCL	6526	2022-12-15	2015-12-21	4.0	4.03	—	4.0	0.018	1.83	9.0	0.09	9.75	0.01	2.379	2.99	0.00	5.2	94.3	0.6	-0.72	0.71	0.74	—	4.0	0.004	0.75	0.0	0.04	14.71	0.00	2.130	13.44	0.40	7.4	92.5	0.1	-0.55	1.78	0.69	0.69	—	24822	3201	3	0	0	0	0	logfile
✔	3JCo	6574	2022-12-19	2016-01-06	4.8	5.76	—	4.7	0.012	1.35	4.0	0.06	10.71	0.01	1.268	95.93	0.41	13.5	85.0	1.5	-5.20	0.87	0.76	—	4.7	0.005	0.89	0.0	0.05	12.37	0.01	1.973	40.19	0.01	8.9	90.7	0.4	-1.74	3.09	0.90	0.84	—	104317	13329	47	0	0	0	0	logfile
✔	3JCP	6575	2022-12-19	2016-01-06	4.6	4.81	—	4.5	0.011	1.30	3.0	0.06	10.56	0.01	1.114	72.27	0.76	11.7	86.7	1.7	-5.00	0.76	0.66	—	4.5	0.005	0.87	0.0	0.05	12.40	0.01	1.907	33.00	0.01	8.6	91.1	0.3	-1.22	0.96	0.86	0.81	—	104170	13367	47	0	0	0	0	logfile
✘	3JCU	6617	2022-12-19	2016-03-10	3.2	3.37	—	3.2	0.012	1.45	0.0	0.07	13.92	0.01	1.210	23.56	0.03	5.0	94.1	1.0	-1.00	0.79	0.84	3.29	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	75994	7648	76	0	322	0	0	logfile
✔	3JCZ	6630	2022-12-15	2016-03-27	3.26	3.11	—	3.3	0.008	0.69	0.0	0.05	7.32	0.01	2.244	9.10	0.00	7.0	93.0	0.0	-4.42	0.77	0.85	4.34	3.3	0.004	0.64	0.0	0.04	13.81	0.00	2.037	10.72	0.08	5.2	94.8	0.0	-0.54	2.05	0.78	0.88	2.25	23286	2976	6	0	0	0	0	logfile
✔	3JD0	6631	2022-12-15	2016-03-28	3.47	3.93	—	3.8	0.012	0.82	0.0	0.05	10.31	0.00	1.989	15.63	0.00	13.3	85.9	0.8	-5.89	0.85	0.82	3.48	3.8	0.003	0.69	0.0	0.04	14.32	0.00	2.131	13.81	0.12	4.7	95.2	0.1	0.79	2.53	0.85	0.86	2.00	23478	2976	12	0	6	0	0	logfile
✔	3JD1	6634	2022-12-15	2016-03-28	3.3	2.71	—	3.0	0.015	1.01	0.0	0.06	8.10	0.01	1.935	12.85	0.00	8.2	91.6	0.2	-5.08	0.79	0.80	3.01	2.5	0.004	0.68	0.0	0.04	15.13	0.00	2.159	9.53	0.24	3.0	97.0	0.0	0.50	1.81	0.80	0.85	2.03	23814	2976	12	0	12	0	0	logfile
✔	3JD2	6635	2022-12-15	2016-03-28	3.3	2.95	—	2.9	0.011	1.04	0.0	0.06	8.84	0.01	2.219	10.21	0.72	5.6	93.6	0.8	-5.54	0.80	0.83	3.54	2.9	0.003	0.58	0.0	0.04	14.11	0.00	2.213	8.68	0.48	3.7	96.3	0.0	0.38	0.98	0.81	0.87	2.34	23814	2976	12	0	12	0	0	logfile
✔	3JD3	6632	2022-12-15	2016-03-28	3.6	3.38	—	3.5	0.011	1.02	0.0	0.06	11.40	0.01	2.125	18.30	0.00	10.7	89.3	0.0	-5.32	0.81	0.80	2.72	3.2	0.004	0.70	0.0	0.04	15.37	0.00	2.156	14.78	0.24	4.7	95.3	0.0	-0.91	0.99	0.81	0.84	2.27	24006	2976	12	0	18	0	0	logfile
✔	3JD4	6633	2022-12-15	2016-03-28	3.4	3.40	—	3.4	0.009	0.96	0.0	0.05	10.21	0.00	2.157	15.85	0.00	6.8	93.0	0.2	-4.82	0.80	0.86	3.90	3.4	0.004	0.63	0.0	0.04	15.69	0.00	2.029	11.52	0.48	3.9	96.1	0.0	0.66	0.73	0.80	0.87	2.26	24054	2982	12	0	18	0	0	logfile
✘	3JD6	6425	2022-12-21	2016-04-12	4.1	5.00	—	4.6	0.026	2.70	34.0	0.12	14.71	0.02	0.000	5.64	0.00	13.3	86.1	0.6	-3.14	0.59	0.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	45781	2839	17	0	0	0	22542	logfile
✔	3JD8	6640	2022-12-12	2016-05-01	4.43	4.58	—	4.4	0.015	1.54	5.0	0.13	16.74	0.02	1.335	78.13	11.82	11.9	79.7	8.4	-3.27	0.54	0.62	—	4.4	0.004	0.89	0.0	0.05	12.15	0.00	2.013	20.78	0.00	9.0	90.2	0.8	-1.05	1.79	0.57	0.73	—	8050	1133	7	0	25	0	0	logfile
✔	3KTT	5148	2022-12-11	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	180.45	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	2.0	0.004	1.18	0.0	0.05	17.18	0.01	2.023	26.84	0.49	9.4	89.6	1.0	-2.22	1.72	0.31	0.41	—	3855	513	1	0	0	0	0	logfile
✔	3LoS	5137	2022-12-12	2010-02-04	4.3	2.98	—	3.0	0.008	2.44	224.0	0.19	19.87	0.01	2.259	87.93	23.89	17.4	68.9	13.8	-6.57	0.57	0.49	—	3.2	0.004	1.15	0.0	0.05	15.79	0.01	2.143	26.45	0.01	19.2	76.6	4.1	-4.17	1.41	0.61	0.54	—	63712	8512	16	0	0	0	0	logfile

• ← previous
• Page 4 of 443
• next →