Table showing results for August 2023

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5A0Q	2981	2023-08-25	2015-04-22	3.5	3.34	—	3.3	0.019	2.22	14.0	0.11	15.42	0.02	0.702	33.75	1.99	4.5	95.1	0.4	-3.18	0.60	0.61	1.82	3.3	0.005	0.87	0.0	0.05	17.77	0.01	2.111	22.76	1.02	4.9	95.0	0.1	-1.73	0.98	0.64	0.64	1.06	43448	5582	34	0	6	0	0	logfile
✔	5A1A	2984	2023-08-22	2015-04-29	2.2	2.04	2.58	2.5	0.009	1.21	0.0	0.04	13.15	0.01	0.020	14.13	1.03	3.9	95.5	0.6	-1.86	0.53	0.76	4.20	2.5	0.003	0.66	0.0	0.04	17.63	0.00	1.961	10.92	2.75	2.3	97.6	0.1	-0.56	1.09	0.53	0.79	3.86	33696	4088	12	0	20	776	0	logfile
✔	5A63	3061	2023-08-11	2015-06-24	3.4	3.50	3.42	3.5	0.010	1.69	8.0	0.11	19.07	0.01	2.079	39.51	13.74	6.4	91.5	2.1	-0.17	0.36	0.40	2.09	3.5	0.003	0.76	0.0	0.04	17.76	0.00	2.217	12.14	1.05	5.5	94.1	0.3	0.06	3.24	0.62	0.82	1.80	10003	1223	13	0	22	0	0	logfile
✔	5A6E	3062	2023-08-12	2015-06-25	4.5	6.76	—	5.1	0.010	3.73	0.0	0.05	15.55	0.01	2.112	8.77	3.19	11.1	88.8	0.2	-5.00	0.36	0.56	—	4.8	0.004	0.60	0.0	0.03	10.41	0.00	2.080	11.78	0.00	5.3	94.7	0.0	-0.72	1.45	0.40	0.73	—	11093	634	4	0	182	0	5102	logfile
✔	5A6F	3063	2023-08-11	2015-06-25	4.2	5.75	—	5.0	0.012	1.50	0.0	0.05	12.32	0.01	2.112	10.08	3.74	12.2	87.6	0.2	-4.94	0.56	0.74	—	4.9	0.002	0.56	0.0	0.04	10.89	0.00	2.048	8.96	0.00	4.7	95.3	0.0	-0.78	0.97	0.57	0.75	—	8881	540	2	0	43	0	4330	logfile
✘	5A7U	3079	2023-08-09	2015-07-10	4.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	455	27	1	0	1	0	231	logfile
✔	5A8L	3099	2023-08-12	2015-07-16	3.8	3.60	—	3.5	0.004	0.67	0.0	0.02	12.36	0.00	1.435	8.96	0.95	10.3	86.8	2.9	-2.06	0.18	0.43	0.47	3.5	0.005	0.82	0.0	0.04	17.26	0.01	2.034	19.30	1.33	10.7	88.1	1.1	-2.35	1.54	0.23	0.63	0.72	12264	624	9	347	0	0	0	logfile
✔	5ADY	3133	2023-08-24	2015-08-25	4.5	4.75	—	4.5	0.011	1.28	0.0	0.06	18.75	0.01	1.391	57.89	0.21	11.7	81.7	6.7	-3.35	0.72	0.63	—	4.5	0.004	0.72	0.0	0.04	17.25	0.01	1.860	27.36	0.00	12.1	86.9	1.0	-2.95	1.11	0.87	0.84	—	97364	4197	35	3020	2	0	0	logfile
✔	5AEY	2850	2023-08-12	2015-01-12	4.3	4.01	—	4.0	0.011	1.71	35.0	0.11	21.88	0.01	2.197	7.01	18.45	8.7	88.5	2.8	-3.27	0.64	0.81	—	3.9	0.003	0.75	0.0	0.04	15.74	0.00	2.150	14.50	0.00	9.5	90.2	0.3	-1.36	2.82	0.63	0.76	—	12675	1590	10	0	5	0	0	logfile
✔	5AJ3	2913	2023-08-13	2015-02-20	3.6	3.73	—	3.7	0.018	1.28	0.0	0.05	18.85	0.07	1.844	24.00	10.71	3.9	96.0	0.1	-3.65	0.86	0.86	2.03	3.6	0.004	1.41	0.0	0.04	19.14	0.02	1.819	16.06	0.59	4.7	95.3	0.0	0.16	1.64	0.84	0.82	1.63	66363	4665	44	1102	1006	118	0	logfile
✔	5AN9	3145	2023-08-24	2015-09-06	3.3	3.29	—	3.3	0.007	1.22	5.0	0.10	17.04	0.01	1.192	3.54	2.32	9.1	88.0	2.9	-3.68	0.38	0.81	1.98	3.3	0.007	0.83	0.0	0.04	17.55	0.01	2.029	13.22	1.16	10.9	88.5	0.6	-2.81	1.54	0.39	0.81	1.46	39693	1905	11	1162	0	0	0	logfile
✔	5ANB	3146	2023-08-26	2015-09-06	4.1	4.11	—	4.1	0.008	1.32	6.0	0.10	18.54	0.01	1.245	5.12	4.33	13.0	83.9	3.1	-4.17	0.41	0.75	—	4.0	0.005	0.85	0.0	0.04	17.23	0.01	1.955	21.18	0.04	14.6	84.7	0.7	-3.65	1.60	0.39	0.70	—	48493	3025	12	1162	0	0	0	logfile
✔	5ANC	3147	2023-08-26	2015-09-06	4.2	4.23	—	4.2	0.008	1.35	7.0	0.10	19.00	0.01	1.236	6.62	4.21	13.6	82.7	3.6	-4.33	0.41	0.74	—	4.2	0.005	0.90	0.0	0.05	17.64	0.01	2.064	23.42	0.00	15.3	83.7	1.0	-4.04	1.59	0.39	0.70	—	46807	2801	11	1162	0	0	0	logfile
✘	5BK4	9400	2023-08-12	2017-09-12	3.9	4.14	—	4.1	0.008	1.24	0.0	0.06	14.44	0.01	2.234	5.12	1.24	12.2	87.6	0.2	-4.81	0.81	0.79	2.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	62482	7636	22	120	8	0	0	logfile
✔	5BKF	9403	2023-08-13	2021-03-19	3.6	3.87	—	4.0	0.004	0.54	0.0	0.04	13.37	0.00	2.015	7.17	0.35	6.2	93.8	0.0	-3.64	0.66	0.81	2.57	3.9	0.003	0.71	0.0	0.04	16.00	0.00	2.234	11.94	0.42	3.6	96.4	0.0	-0.31	1.34	0.66	0.83	2.29	13470	1694	10	0	9	0	0	logfile
✔	5BKG	9404	2023-08-13	2021-03-19	3.8	3.93	—	4.0	0.004	0.58	0.0	0.04	12.34	0.00	2.044	8.32	0.21	6.2	93.8	0.0	-3.60	0.68	0.82	2.85	4.0	0.003	0.70	0.0	0.05	15.62	0.00	2.210	11.60	0.27	4.4	95.6	0.0	-0.58	0.64	0.70	0.84	2.09	13509	1689	10	0	9	0	0	logfile
✔	5BKi	9405	2023-08-14	2021-03-19	3.1	3.21	—	3.2	0.010	1.04	0.0	0.06	15.27	0.01	2.252	4.46	0.44	5.4	94.6	0.0	-5.10	0.70	0.85	3.65	3.2	0.002	0.53	0.0	0.05	16.01	0.00	2.138	5.90	0.05	3.6	96.4	0.0	0.05	1.61	0.65	0.85	2.70	16933	2156	20	0	21	4	0	logfile
✔	5BKJ	9406	2023-08-14	2021-03-19	3.5	3.68	—	3.7	0.006	0.81	0.0	0.06	14.99	0.00	2.251	5.00	1.09	4.1	95.9	0.0	-3.93	0.69	0.84	2.13	3.7	0.002	0.52	0.0	0.05	16.34	0.00	2.242	7.50	0.33	2.0	98.0	0.0	0.25	1.63	0.69	0.83	1.97	16939	2156	16	0	7	4	0	logfile
✔	5BKK	9407	2023-08-14	2021-03-19	3.5	3.17	—	3.5	0.004	0.72	0.0	0.05	14.72	0.00	2.242	5.39	0.11	3.5	96.5	0.0	-4.88	0.68	0.82	2.52	3.5	0.003	0.56	0.0	0.05	16.37	0.00	2.142	8.32	0.33	2.9	97.1	0.0	-0.82	1.21	0.65	0.82	2.02	16831	2156	11	0	6	0	0	logfile
✔	5FJ8	3178	2023-08-24	2015-10-06	3.9	3.97	—	4.0	0.004	1.21	0.0	0.04	13.54	0.00	2.035	13.90	4.05	16.0	82.9	1.1	-4.73	0.70	0.69	0.95	3.9	0.004	0.90	0.0	0.05	17.08	0.00	1.992	14.50	0.73	13.0	85.7	1.3	-2.75	1.01	0.76	0.77	0.97	39284	4804	25	47	41	0	0	logfile

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