Table showing results for July 2022

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6GH5	0001	2022-07-06	2018-05-04	3.4	3.71	—	3.4	0.033	3.30	333.0	0.22	17.29	0.02	1.847	24.58	4.29	11.0	86.7	2.3	-4.34	0.89	0.88	2.50	3.4	0.004	0.82	0.0	0.04	18.22	0.00	2.153	12.36	0.35	9.0	90.0	1.0	-0.92	1.34	0.88	0.86	1.70	28316	3593	8	92	50	0	0	logfile
✔	6GH6	0002	2022-07-05	2018-05-04	4.1	4.20	—	3.9	0.004	0.91	0.0	0.05	14.40	0.00	1.934	16.38	0.38	9.7	89.3	0.9	-3.61	0.85	0.74	—	3.9	0.004	0.77	0.0	0.04	16.02	0.00	1.988	11.94	0.08	9.3	90.0	0.6	-0.97	1.78	0.87	0.81	—	28051	3482	8	96	51	0	0	logfile
✘	6GiQ	0004	2022-07-07	2018-05-15	3.23	3.67	3.34	3.6	0.010	1.26	2.0	0.07	12.12	0.01	1.203	5.99	0.45	5.9	93.9	0.2	-3.41	0.74	0.82	2.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	44120	5439	42	0	57	0	0	logfile
✔	6GiY	0008	2022-07-06	2018-05-15	4.3	4.14	—	4.0	0.007	1.18	0.0	0.06	10.19	0.01	2.232	6.26	0.29	12.7	87.1	0.3	-5.09	0.73	0.77	—	4.0	0.003	0.78	0.0	0.04	12.04	0.01	2.100	13.10	0.03	10.8	89.2	0.1	-2.20	0.91	0.73	0.76	—	28969	3649	9	0	0	0	0	logfile
✔	6GJ1	0009	2022-07-03	2018-05-15	4.7	4.83	—	4.4	0.010	1.51	5.0	0.07	11.65	0.01	0.341	23.90	0.72	18.3	81.3	0.4	-5.15	0.83	0.71	—	4.4	0.003	0.89	0.0	0.05	12.43	0.01	2.086	22.85	0.00	17.1	82.8	0.1	-3.73	1.19	0.85	0.76	—	13013	1638	4	0	0	0	0	logfile
✔	6GJ3	0010	2022-07-04	2018-05-15	4.3	4.02	—	3.9	0.008	1.19	0.0	0.06	10.34	0.01	2.248	5.14	0.37	13.5	86.2	0.3	-4.76	0.71	0.78	—	3.9	0.003	0.69	0.0	0.04	12.07	0.01	2.261	8.85	0.00	9.6	90.4	0.0	-1.53	0.76	0.71	0.77	—	17405	2194	7	0	0	0	0	logfile
✔	6GJC	0011	2022-07-05	2018-05-16	3.3	3.78	3.65	3.6	0.008	1.07	6.0	0.06	10.27	0.01	2.247	5.54	1.03	7.5	92.5	0.0	-4.03	0.86	0.84	2.14	3.6	0.005	0.72	0.0	0.05	13.16	0.00	2.099	11.13	0.46	6.5	93.5	0.0	-0.74	0.66	0.87	0.86	1.73	124992	16620	12	0	6	0	0	logfile
✔	6GJZ	0012	2022-07-03	2018-05-17	4.06	4.32	3.49	4.1	0.011	1.11	0.0	0.05	10.30	0.01	2.008	14.06	0.00	10.8	88.9	0.3	-4.09	0.66	0.79	—	4.1	0.003	0.76	0.0	0.04	11.90	0.00	2.023	28.55	0.00	11.3	88.7	0.0	-0.73	1.51	0.67	0.80	—	10503	682	4	28	2	0	4402	logfile
✔	6GKH	0023	2022-07-03	2018-05-21	4.06	4.18	3.92	4.1	0.006	1.49	0.0	0.05	9.62	0.00	1.641	13.81	0.00	10.0	90.0	0.0	-4.26	0.61	0.79	—	4.1	0.004	1.07	0.0	0.04	11.94	0.00	1.776	24.74	0.00	9.4	90.6	0.0	-1.10	1.53	0.61	0.81	—	10587	685	4	30	4	0	4399	logfile
✔	6GKM	0024	2022-07-03	2018-05-21	3.87	4.07	2.00	4.0	0.007	0.98	0.0	0.05	10.31	0.00	2.134	11.46	0.16	9.7	90.2	0.1	-3.66	0.63	0.81	2.22	4.0	0.003	0.73	0.0	0.04	13.77	0.00	2.101	21.60	0.16	8.8	91.2	0.0	-0.36	1.48	0.62	0.82	2.37	10562	689	4	28	2	0	4402	logfile
✔	6GMH	0031	2022-07-08	2018-05-26	3.1	3.78	3.06	3.2	0.006	0.97	0.0	0.06	12.73	0.01	1.921	5.58	0.53	4.8	95.1	0.1	-2.86	0.83	0.81	2.87	3.3	0.005	0.79	0.0	0.05	14.80	0.00	1.538	13.97	0.13	5.1	94.8	0.0	-0.14	0.71	0.83	0.82	2.43	50239	6397	30	106	525	0	0	logfile
✔	6GML	0038	2022-07-07	2018-05-27	3.2	3.74	3.37	3.5	0.007	0.97	1.0	0.06	13.29	0.01	2.054	7.20	0.43	5.9	94.1	0.0	-3.52	0.73	0.68	1.81	3.5	0.005	0.81	0.0	0.04	15.70	0.00	1.522	15.03	0.14	5.6	94.4	0.0	0.01	1.47	0.80	0.82	1.92	44827	5576	28	98	111	0	0	logfile
✔	6GoV	0043	2022-07-06	2018-06-04	3.7	4.02	3.65	3.9	0.008	0.93	0.0	0.06	12.68	0.01	1.963	5.74	0.25	7.7	92.2	0.1	-3.76	0.79	0.79	1.97	3.9	0.003	0.61	0.0	0.04	14.87	0.00	2.077	9.25	0.08	4.9	95.1	0.0	-0.14	1.50	0.82	0.80	1.22	35040	4157	14	117	3	0	0	logfile
✔	6GNi	0044	2022-07-03	2018-05-30	4.9	4.56	4.23	4.2	0.008	1.48	0.0	0.10	15.17	0.01	1.943	21.63	3.68	6.3	91.3	2.4	-3.39	0.44	0.63	—	4.2	0.003	0.65	0.0	0.04	13.71	0.01	1.875	13.47	0.07	2.9	97.0	0.2	0.79	1.66	0.48	0.73	—	12937	1632	6	0	4	0	0	logfile
✔	6GSA	0051	2022-07-04	2018-06-13	4.2	5.94	—	5.0	0.011	1.24	4.0	0.09	12.00	0.01	2.189	4.82	1.75	5.1	94.7	0.2	-2.92	0.67	0.44	—	5.0	0.003	0.71	0.0	0.04	12.35	0.00	2.145	17.00	0.00	4.7	95.3	0.0	0.04	1.16	0.83	0.73	—	16272	1999	5	0	0	0	0	logfile
✔	6GSi	0056	2022-07-09	2018-06-14	3.75	4.09	—	4.0	0.011	0.92	0.0	0.06	9.92	0.01	1.076	9.33	0.71	15.3	84.5	0.2	-5.00	0.55	0.81	2.93	4.0	0.003	0.64	0.0	0.04	13.33	0.00	1.877	11.43	0.21	9.0	90.9	0.1	-2.38	0.96	0.57	0.84	2.73	150378	9831	48	0	12	0	74247	logfile
✔	6GTC	0061	2022-07-03	2018-06-18	3.91	3.85	—	3.8	0.004	0.94	0.0	0.05	15.72	0.01	2.275	5.90	0.86	8.8	91.2	0.0	-5.69	0.70	0.67	1.97	3.8	0.010	1.15	1.0	0.04	18.50	0.01	2.064	16.03	0.09	7.5	92.5	0.0	-2.93	1.13	0.71	0.69	1.72	11931	1280	4	65	0	0	0	logfile
✔	6GTD	0062	2022-07-03	2018-06-18	4.24	4.28	—	3.9	0.009	1.26	0.0	0.08	21.74	0.01	2.138	13.01	0.00	19.8	80.2	0.0	-5.72	0.78	0.65	—	3.9	0.006	0.87	0.0	0.06	20.44	0.00	1.993	20.74	0.00	19.9	80.1	0.0	-3.31	0.98	0.79	0.67	—	6456	1269	4	66	0	0	0	logfile
✔	6GTE	0063	2022-07-03	2018-06-18	4.07	3.99	—	3.9	0.009	1.11	0.0	0.06	16.15	0.01	2.232	8.13	0.75	15.6	84.3	0.1	-5.76	0.73	0.71	—	3.9	0.003	0.64	0.0	0.04	16.26	0.00	2.173	13.64	0.00	8.1	91.9	0.0	-2.92	0.83	0.73	0.69	—	10872	1274	4	67	0	0	0	logfile
✔	6GTF	0064	2022-07-03	2018-06-18	3.63	3.94	—	3.8	0.010	1.17	0.0	0.07	16.19	0.01	2.030	10.45	0.43	15.5	84.5	0.0	-5.84	0.72	0.64	1.89	3.8	0.003	0.70	0.0	0.04	17.88	0.00	2.139	14.54	0.43	7.0	93.0	0.0	-3.05	1.43	0.74	0.64	1.84	10871	1280	4	66	0	0	0	logfile

• Page 1 of 392
• next →