Table showing results for May 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6GH5	0001	2021-05-05	2018-05-04	3.4	3.71	—	3.4	0.033	3.30	333.0	0.22	17.29	0.02	1.847	24.10	4.29	11.0	86.7	2.3	-4.34	0.89	0.88	2.50	3.5	0.003	0.80	0.0	0.04	18.29	0.00	2.078	11.50	0.27	9.0	90.0	1.1	-0.72	1.37	0.89	0.88	1.41	28316	3593	8	92	50	0	0	logfile
✔	6GH6	0002	2021-05-05	2018-05-04	4.1	4.21	—	3.9	0.004	0.90	0.0	0.05	14.40	0.00	1.934	16.19	0.38	9.7	89.3	0.9	-3.61	0.85	0.74	—	3.9	0.003	0.75	0.0	0.04	15.62	0.00	2.141	10.65	0.04	9.3	90.1	0.6	-0.80	1.83	0.86	0.78	—	28051	3482	8	96	51	0	0	logfile
✘	6GiQ	0004	2021-05-06	2018-05-15	3.23	3.67	3.34	3.6	0.010	1.22	2.0	0.07	11.24	0.01	1.201	5.88	0.45	5.9	93.9	0.2	-3.41	0.74	0.82	2.93	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	44120	5439	42	0	57	0	0	logfile
✔	6GiY	0008	2021-05-05	2018-05-15	4.3	4.14	—	4.0	0.007	1.18	0.0	0.06	10.19	0.01	2.232	6.17	0.29	12.7	87.1	0.3	-5.09	0.73	0.77	—	4.0	0.003	0.76	0.0	0.04	12.11	0.01	2.104	12.43	0.00	10.5	89.4	0.1	-1.94	0.98	0.73	0.76	—	28969	3649	9	0	0	0	0	logfile
✔	6GJ1	0009	2021-05-04	2018-05-15	4.7	4.83	—	4.4	0.010	1.51	5.0	0.07	11.65	0.01	0.341	23.67	0.72	18.3	81.3	0.4	-5.15	0.83	0.71	—	4.4	0.003	0.85	0.0	0.05	12.66	0.01	2.117	17.66	0.07	14.3	85.7	0.0	-3.37	1.30	0.85	0.74	—	13013	1638	4	0	0	0	0	logfile
✔	6GJ3	0010	2021-05-04	2018-05-15	4.3	4.02	—	3.9	0.008	1.19	0.0	0.06	10.34	0.01	2.248	5.11	0.37	13.5	86.2	0.3	-4.76	0.71	0.78	—	3.9	0.003	0.74	0.0	0.04	12.35	0.01	2.213	9.80	0.00	11.0	89.0	0.0	-1.47	0.79	0.71	0.77	—	17405	2194	7	0	0	0	0	logfile
✔	6GJC	0011	2021-05-07	2018-05-16	3.3	3.78	3.65	3.6	0.008	1.07	6.0	0.06	10.27	0.01	2.247	5.45	1.03	7.5	92.5	0.0	-4.03	0.86	0.84	2.14	3.6	0.004	0.71	0.0	0.05	13.32	0.00	2.086	10.83	0.34	6.3	93.7	0.0	-0.69	0.68	0.87	0.86	1.72	124992	16620	12	0	6	0	0	logfile
✔	6GJZ	0012	2021-05-03	2018-05-17	4.06	4.32	3.49	4.1	0.011	1.06	0.0	0.05	10.61	0.01	2.008	13.98	0.00	10.8	88.9	0.3	-4.09	0.66	0.79	—	4.1	0.004	0.78	0.0	0.04	12.45	0.00	2.044	31.29	0.00	12.0	87.8	0.1	-1.10	1.55	0.67	0.80	—	10503	682	4	28	2	0	4402	logfile
✔	6GKH	0023	2021-05-04	2018-05-21	4.06	4.18	3.92	4.1	0.006	0.95	0.0	0.05	9.62	0.00	1.641	13.48	0.00	10.0	90.0	0.0	-4.26	0.61	0.79	—	4.1	0.003	0.77	0.0	0.04	12.52	0.00	1.903	25.97	0.00	9.9	90.1	0.0	-0.79	1.61	0.62	0.81	—	10587	685	4	30	4	0	4399	logfile
✔	6GKM	0024	2021-05-04	2018-05-21	3.87	4.06	2.00	4.0	0.007	0.98	0.0	0.05	10.31	0.00	2.134	11.21	0.16	9.7	90.2	0.1	-3.66	0.63	0.81	2.22	4.0	0.003	0.72	0.0	0.04	14.00	0.00	2.050	23.16	0.32	9.3	90.7	0.0	-0.13	1.84	0.62	0.82	2.27	10562	689	4	28	2	0	4402	logfile
✔	6GMH	0031	2021-05-07	2018-05-26	3.1	3.78	3.06	3.2	0.006	0.97	0.0	0.06	12.77	0.01	1.921	5.44	0.53	4.8	95.1	0.1	-2.86	0.83	0.81	2.87	3.3	0.004	0.67	0.0	0.04	14.79	0.00	2.034	10.84	0.36	5.2	94.8	0.0	0.19	0.79	0.84	0.84	2.37	50239	6397	30	106	525	0	0	logfile
✔	6GML	0038	2021-05-06	2018-05-27	3.2	3.74	3.37	3.5	0.007	0.97	1.0	0.06	13.29	0.01	2.054	7.09	0.43	5.9	94.1	0.0	-3.52	0.73	0.68	1.81	3.5	0.004	0.64	0.0	0.04	15.61	0.00	2.034	12.12	0.23	4.8	95.2	0.0	0.40	1.50	0.82	0.84	1.88	44827	5576	28	98	111	0	0	logfile
✔	6GoV	0043	2021-05-06	2018-06-04	3.7	4.02	3.65	3.9	0.008	0.93	0.0	0.06	12.68	0.01	1.963	5.69	0.25	7.7	92.2	0.1	-3.76	0.79	0.79	1.97	3.9	0.003	0.59	0.0	0.04	14.89	0.00	2.136	8.74	0.14	4.9	95.1	0.0	-0.13	0.71	0.83	0.83	1.26	35040	4157	14	117	3	0	0	logfile
✔	6GNi	0044	2021-05-04	2018-05-30	4.9	4.56	4.23	4.2	0.008	1.47	0.0	0.10	15.20	0.01	1.943	20.23	3.68	6.3	91.3	2.4	-3.39	0.44	0.63	—	4.2	0.003	0.64	0.0	0.04	13.73	0.01	2.010	13.01	0.00	3.4	96.5	0.1	0.69	1.72	0.48	0.73	—	12937	1632	6	0	4	0	0	logfile
✘	6GQ1	0047	2021-05-12	2018-06-07	4.4	4.37	—	4.3	0.006	1.13	0.0	0.06	17.14	0.01	1.193	8.67	1.11	16.1	83.4	0.5	-5.54	0.84	0.78	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	210540	12168	92	5362	10	0	0	logfile
✔	6GQB	0048	2021-05-12	2018-06-07	3.9	3.98	—	3.9	0.008	1.19	1.0	0.06	17.18	0.01	2.146	8.35	1.22	16.6	83.0	0.5	-5.75	0.81	0.75	1.46	3.9	0.008	0.87	1.0	0.05	17.50	0.01	0.913	20.94	0.36	15.7	84.0	0.3	-4.72	0.43	0.83	0.79	1.17	212143	12373	93	5362	10	0	0	logfile
✘	6GQV	0049	2021-05-12	2018-06-08	4.0	4.12	—	4.0	0.006	1.18	3.0	0.06	17.73	0.01	1.224	8.03	1.11	15.9	83.5	0.6	-5.63	0.83	0.77	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	212058	12368	93	5361	9	0	0	logfile
✔	6GSA	0051	2021-05-04	2018-06-13	4.2	5.94	—	5.0	0.011	1.24	4.0	0.09	12.00	0.01	2.189	4.57	1.75	5.1	94.7	0.2	-2.92	0.67	0.44	—	5.0	0.003	0.74	0.0	0.04	12.56	0.00	2.090	20.54	0.06	5.6	94.4	0.0	-0.13	1.75	0.83	0.73	—	16272	1999	5	0	0	0	0	logfile
✔	6GSi	0056	2021-05-06	2018-06-14	3.75	4.09	—	4.0	0.011	0.93	0.0	0.06	9.92	0.01	1.076	9.17	0.71	15.3	84.5	0.2	-5.00	0.55	0.81	2.93	4.0	0.003	0.66	0.0	0.04	13.90	0.00	1.856	11.17	0.19	9.5	90.5	0.0	-2.14	1.02	0.57	0.83	2.64	150378	9831	48	0	12	0	74247	logfile
✔	6GTC	0061	2021-05-04	2018-06-18	3.91	3.85	—	3.8	0.004	0.94	0.0	0.05	15.72	0.01	2.275	5.90	0.86	8.8	91.2	0.0	-5.69	0.70	0.67	1.97	3.8	0.003	0.67	0.0	0.04	17.79	0.00	2.062	10.99	0.43	7.2	92.8	0.0	-2.69	1.39	0.71	0.69	1.37	11931	1280	4	65	0	0	0	logfile

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